Citrus Sinensis ID: 003579

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------81
Protein Sequence
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Secondary Structure (PSIPRED)
cccccccEEEcEEEcEEEEEEEEccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEEccEEEEEcccEEEEEEcccEEEEEEcccccEEEEEEEccEEEEEEccccEEEEEcccccEEEEEcccEEcccccEEEEEEcccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEEccccccEEEccEEEEEcccEEcccccEEEEEEccccEEEEEEccccccccEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEcccEEEEEEcccccEEEEEEccccEEEEEccccccccccccEEccccccEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEccccHHEEEccccHHHHHHccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHcccccccccccHHHHHccccccHHHHccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccccccccccEEEEEEcccccEEEEEccccEEEEEccccccEEEEEEcccEEEEEccccEEEEEEcccccEEEEEcccccccccEEEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEccccccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEcccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEEEEEEcccccEEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEcccccEEEEcccccEEEEccccccEEEEEccHHHHHEccccccccccccccccEcccccccccEEEEcccccccccccccHHHHHHHHHHccccHEcHHcHHHHHHHHHHHcHHHHHHccEEEEcEEEEc
Coil and Loop (DISEMBL)
mgifepykaigyitssvpfsvqrlgtenfVTVSVGKAFHIYNCAklnlvlvgpqlpKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEhilsididgNMFIWAFKGieenlapvghvklddkftptcimhpdtylNKVIVGSQEGSLQLWNISTKKKLYefkgwgssisscvsspaldvvavgcsdgkihvhnvrydeeLVTFTHSMRGAVTAlafssdgqpllasgassgvISIWNLEKRRLQSVIREAHDNAIISLHffanepvlmsasadnSIKMWIfdttdgdprllrfrsghsapplcIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEelklkpviafdcaeirerdwcnvvtCHMDTAQAYVWRLQNfvlgehilrpcpenptavkactisacgnfaVLGTAGGWIERFnlqsgisrgsyldmsersnyahngeVVGVACDSTNTLMIsagyhgdikvwdfkgrdlksrWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFeghtdritdfcfsedgkwllssgmdgslRIWDVILARQIDAIHVDVSItalslspnmdVLATAHVDQNGVYLWVNRcmfsgdsnidsyasgkeivsvkmpsvssvegcqdenssqpdvhrtdrvpkdsfglptfkqqipdlvtlsllpksqwqSLINLDIIKarnkpieppkkpekapfflpsvpslsgeilfkpsestkedtesLKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYrlncfwii
Flexible Loop (DISEMBL)
mgifepykaigyiTSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIqdqqsrelsqrhvakrarklkmkeeelklkpviafdcaeirERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKfeghtdritdfcFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEgcqdenssqpdvhrtdrvPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Low Complexity Region (SEG)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGssisscvssPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARklkmkeeelklkPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNkpieppkkpekAPFFLPSVPSLSGEILFKPSESTKEDTESLKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Disordered region (IsUnstruct)
**IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ*************************LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYA****************************************GLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKA******************************************LKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWI*
Disordered Region (DISOPRED)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS************RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFG*PTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNK*****KKPEKAPFFLPSVPSL*****************************************CFRSLIMMITKNLIKDLSIYRLNCFWII
Disordered Region (DISEMBL)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSV**********************RTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKP**********LKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Disordered Region (DISPRO)
*GIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSEST****ESLKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLNCFWII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	809	2.2.26 [Sep-21-2011]
O14053	902	Uncharacterized WD repeat	yes	no	0.875	0.784	0.382	1e-149
Q8NI36	951	WD repeat-containing prot	yes	no	0.887	0.754	0.378	1e-144
Q06078	939	U3 small nucleolar RNA-as	yes	no	0.888	0.765	0.322	1e-107
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.487	0.234	0.242	2e-18
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.587	0.377	0.218	3e-16
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.506	0.268	0.205	2e-14
Q00808	1356	Vegetative incompatibilit	no	no	0.583	0.348	0.221	4e-14
Q55563	1693	Uncharacterized WD repeat	N/A	no	0.543	0.259	0.245	8e-14
Q6NVM2	655	Katanin p80 WD40 repeat-c	no	no	0.229	0.283	0.288	8e-13
Q6PH57	340	Guanine nucleotide-bindin	no	no	0.270	0.644	0.251	2e-12

>sp|O14053|YC47_SCHPO Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1672.07 PE=4 SV=1

 Score =  528 bits (1361), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/753 (38%), Positives = 434/753 (57%), Gaps = 45/753 (5%)

Query: 3   IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRAL 62
           I+ P+++IG+++++VPF ++  GT   VT SVG  F  Y+C KLNL+ VG QL K+I  L
Sbjct: 23  IYAPFRSIGHVSNAVPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCL 82

Query: 63  ASYRDYTFAAYGNHIAVVKRAHQVATW----SRHSAKVNLLLLFGEHILSIDIDGNMFIW 118
            S++D+   A G+ I   KR   +  W     +    V  L  FGE I++     ++++W
Sbjct: 83  KSFKDFMLVAAGSKIFAYKRGKII--WDIDVEQEHGTVTHLDAFGEWIIACTSSRHVYVW 140

Query: 119 AFKGIEENLAPVGHVKLDDKFTP------TCIMHPDTYLNKVIVGSQEGSLQLWNISTKK 172
             K   +   P    +L   F P      T ++HP TYLNK+++G  +G+LQ+WN+   K
Sbjct: 141 --KHASKYSVP----ELHTTFLPNTNADITSLLHPSTYLNKILLGFSDGALQIWNLRVSK 194

Query: 173 KLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231
           +++EF+ + G  I+S   +P LDV+AVG   G+I + N++    L+ F     G V + +
Sbjct: 195 RVHEFQEFFGDGITSLTQAPVLDVLAVGTISGRIVIFNLKNGSILMEFKQD--GQVLSCS 252

Query: 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291
           F +DG P+LAS    G +S W+L KRR+Q+V   AH  ++  + F   +P+L++A  DNS
Sbjct: 253 FRTDGTPILASSNPIGDLSFWDLSKRRIQNVTYNAHFGSLPKIQFLNGQPILVTAGPDNS 312

Query: 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSR 350
           +K WIFD+ DG PR+LR R+GH  PP  ++FY    H L SA  DR+ R  S+ QD QS 
Sbjct: 313 LKEWIFDSMDGAPRILRSRNGHYEPPSFVKFYGKSVHFLISAATDRSLRAVSLYQDSQST 372

Query: 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410
           ELSQ  V  +A+KL ++ EELKL  + A   +  RE+ W NV+T H + + A  W  ++ 
Sbjct: 373 ELSQGSVISKAKKLNVRPEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSK 432

Query: 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470
            LG+H+L P  +  T+V++  +S CGNF ++G++ G ++ +N+QSGI R S+   S    
Sbjct: 433 TLGQHVL-PTSDG-TSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSFGQSS---- 486

Query: 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530
                 V  V  D+ N ++++A   G +K WDF   +L    +VG S+   +Y   + L+
Sbjct: 487 -LSGKPVTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAIYQHSSDLV 545

Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
           A   DD  IR+ DV   ++VR+  GH++R+T F FS+ G+WL+++ +DG++R WD+    
Sbjct: 546 AVACDDFGIRIVDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGH 605

Query: 591 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSV 650
            ID+I      T+L+ +P  D LAT HVDQ G+ LW N  MF   S         ++V V
Sbjct: 606 LIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFKHVST--KALRLDDVVEV 663

Query: 651 KMPSVSS------VEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQ 704
             PSVS       VE   +  S+  D        ++     T  Q  P+L TLS LP++Q
Sbjct: 664 SAPSVSGEKGISVVEAALNVESNAED--------EEDISYRTMDQLDPNLQTLSKLPRTQ 715

Query: 705 WQSLINLDIIKARNKPIEPPKKPEKAPFFLPSV 737
           WQ+LINL+ IKARN P E PK PEKAPFFLPS+
Sbjct: 716 WQTLINLEAIKARNAPKEVPKVPEKAPFFLPSL 748

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8NI36|WDR36_HUMAN WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1

 Score =  511 bits (1317), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/751 (37%), Positives = 441/751 (58%), Gaps = 33/751 (4%)

Query: 2   GIFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKI 59
            +F  ++A+G  ++ +P  V+   L    +VT  VGK+FH Y+  KL+LV V   +P+ I
Sbjct: 68  ALFAGFRALGLFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDI 127

Query: 60  RALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIW 118
             +A+     FAAYGN  +   R  ++  T+  H A+++ L  FG+HI+S+D DG + IW
Sbjct: 128 CCMAADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHFLQPFGDHIISVDTDGILIIW 187

Query: 119 AFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177
                EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F
Sbjct: 188 HIYSEEEYL----QLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTF 243

Query: 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237
            GW   +++   +PA+DVVA+G   G++ +HN++++E L+ F     G +T+++F +DG 
Sbjct: 244 PGWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDW-GPITSISFRTDGH 302

Query: 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
           P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIF
Sbjct: 303 PVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIF 362

Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
           D   G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS + ++ ++ L    
Sbjct: 363 DGPTGEGRLLRFRMGHSAPLTNIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGL 422

Query: 357 VAKRARKLKMKEEEL--KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
           + K+  K K  +  +  +L P+  F   E RE DW  ++ CH        W  Q   +G 
Sbjct: 423 INKKRVKRKGLQNTMSVRLPPITKFAAEEARESDWDGIIACHQGKLSCSTWNYQKSTIGA 482

Query: 415 HILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
           + L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + A
Sbjct: 483 YFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSF-----GKDQA 537

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
           H G V GVA D  N L ++ G  G +K W+FK + L     +  S   ++ HR +G+L  
Sbjct: 538 HKGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPNIMLLHRDSGILGL 597

Query: 533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
             DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     I
Sbjct: 598 ALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDCSIRTWDLPSGCLI 657

Query: 593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
           D   +D +   +S+SP  D LAT+HVD  G+YLW N  ++       S  S + + +  +
Sbjct: 658 DCFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLY-------SVVSLRPLPADYV 710

Query: 653 PSVSSVEG---CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLI 709
           PS+  + G    QD   S+  V  +D + +  +  P  +Q    LVTLSLLP+S+W++L+
Sbjct: 711 PSIVMLPGTCQTQDVEVSEETVEPSDELIE--YDSP--EQLNEQLVTLSLLPESRWKNLL 766

Query: 710 NLDIIKARNKPIEPPKKPEKAPFFLPSVPSL 740
           NLD+IK +NKP EPPK P+ APFF+P++P L
Sbjct: 767 NLDVIKKKNKPKEPPKVPKSAPFFIPTIPGL 797

Involved in T-cell activation and highly co-regulated with IL2.

Homo sapiens (taxid: 9606)

>sp|Q06078|UTP21_YEAST U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP21 PE=1 SV=1

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 247/765 (32%), Positives = 404/765 (52%), Gaps = 46/765 (6%)

Query: 3   IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGP-QLPKKIRA 61
           IF P++ IG +++ VPF+   LG+  ++   VGK F IY+   L+L+ V   + P  I A
Sbjct: 23  IFSPFRIIGNVSNGVPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSIVA 82

Query: 62  LASYRDYTFAAYGNHIAVVKRAHQVATWSRHS-AKVNLLLLFGEHILSIDIDGNMFIWAF 120
           L+++  Y +AAY N + + KR  +       + A V  L +FG+++ +   D ++FI+  
Sbjct: 83  LSAHFHYVYAAYENKVGIYKRGIEEHLLELETDANVEHLCIFGDYLCASTDDNSIFIYKK 142

Query: 121 KGIEENLAPVGHVKLD----DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
              ++      + KL            + H  TYLNK+ V ++   L L+N+ T K ++ 
Sbjct: 143 SDPQDKYPSEFYTKLTVTEIQGGEIVSLQHLATYLNKLTVVTKSNVL-LFNVRTGKLVFT 201

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236
              +   I++   +P LD++A+G   G++ + N+R  + + T     +  +++L+F +DG
Sbjct: 202 SNEFPDQITTAEPAPVLDIIALGTVTGEVIMFNMRKGKRIRTIKIP-QSRISSLSFRTDG 260

Query: 237 QPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292
              L+ G SSG +  ++L++R     L+++ RE++   +    F   +P+++++  DNS+
Sbjct: 261 SSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESY-GGVTQATFLNGQPIIVTSGGDNSL 319

Query: 293 KMWIFDTT----DGD-----PRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFS 342
           K ++FD +     GD     PR LR R GHS PP  I F  +  H +LSA +DR+   FS
Sbjct: 320 KEYVFDPSLSQGSGDVVVQPPRYLRSRGGHSQPPSYIAFADSQSHFMLSASKDRSLWSFS 379

Query: 343 VIQDQQSRELSQR-HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401
           + +D QS+E+SQR H  +   ++     + K   ++A      R  +W N++T H D   
Sbjct: 380 LRKDAQSQEMSQRLHKKQDGGRVGGSTIKSKFPEIVALAIENARIGEWENIITAHKDEKF 439

Query: 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461
           A  W ++N  +G        +    VK+  +S CGNF  +G++ G I  +N+QSGI R  
Sbjct: 440 ARTWDMRNKRVGRWTFDTTDDG--FVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKK 497

Query: 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI 521
           Y          H   V G++ D  N  M+S G  G +  +DF    L  + ++   +  +
Sbjct: 498 Y--------KLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNKSTLLGKLKLDAPITAM 549

Query: 522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 581
           VYHR + L A   DDL I + D V  R+VR+  GH++RIT F FS +G+W++S+ +D ++
Sbjct: 550 VYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTI 609

Query: 582 RIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS--NID 639
           R WD+     ID I VD   T +  SPN D+LAT HV  NG+ +W NR  F   S   ID
Sbjct: 610 RTWDLPTGGCIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQFKTVSTRTID 669

Query: 640 SYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQI-PDLVTLS 698
                 E   + +PS +SV G     S   + +  + +    F   T  +QI  +L+TLS
Sbjct: 670 E----SEFARMALPS-TSVRGNDSMLSGALESNGGEDLNDIDFNTYTSLEQIDKELLTLS 724

Query: 699 LLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGE 743
           + P+S+  +L++LD+I+ R+KP E PKK EK PFFL     LSGE
Sbjct: 725 IGPRSKMNTLLHLDVIRKRSKPKEAPKKSEKLPFFL----QLSGE 765

Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 192/449 (42%), Gaps = 55/449 (12%)

Query: 213  DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII 272
            D  L    +    AV +++FS DGQ + ASG S   I +W      L   I   H+  + 
Sbjct: 1102 DGRLFRTLNGHEDAVYSVSFSPDGQTI-ASGGSDKTIKLWQTSDGTLLKTI-TGHEQTVN 1159

Query: 273  SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332
            +++F  +   L SAS+D+SIK+W  DTT G  +LL   +GHSA  + +RF  +G+ I + 
Sbjct: 1160 NVYFSPDGKNLASASSDHSIKLW--DTTSG--QLLMTLTGHSAGVITVRFSPDGQTIAAG 1215

Query: 333  GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE---ELKLKP---VIAFDCAEIRE 386
             +D+  +L+             R   K  + L   ++    L   P    +A   A+   
Sbjct: 1216 SEDKTVKLW------------HRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTI 1263

Query: 387  RDW-------CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 439
            + W          +  H D+    VW +     G+ I     +N   +K           
Sbjct: 1264 KLWRIADGKLVKTLKGHNDS----VWDVNFSSDGKAIASASRDN--TIKLWNRHGIELET 1317

Query: 440  VLGTAGG-WIERFNLQSGISRGSYLDMSER----------SNYAHNGEVVGVACDSTNTL 488
              G +GG +   F   S I   + LD + R             A N  V  V+     ++
Sbjct: 1318 FTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSI 1377

Query: 489  MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548
            + +AG  G+I++W  +   L        ++  I +     L+A+   D  ++++ V   +
Sbjct: 1378 IATAGADGNIQLWHSQDGSLLKTLPGNKAIYGISFTPQGDLIASANADKTVKIWRVRDGK 1437

Query: 549  MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSL 606
             ++   GH + +    FS DGK L S+  D ++++W+V   +    +  H D  +  +S 
Sbjct: 1438 ALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTD-EVFWVSF 1496

Query: 607  SPNMDVLATAHVDQNGVYLWVNRCMFSGD 635
            SP+  ++A+A  D+  + LW +   FSG+
Sbjct: 1497 SPDGKIIASASADKT-IRLWDS---FSGN 1521

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 115/527 (21%), Positives = 218/527 (41%), Gaps = 52/527 (9%)

Query: 103  GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS 162
            GE + S   D  + +W  +         GH      +       PD   N +   + + +
Sbjct: 738  GETLASASGDKTIKLWDIQDGTCLQTLTGHTD----WVRCVAFSPDG--NTLASSAADHT 791

Query: 163  LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS 222
            ++LW++S  K L   K     + S   S     +A G  D  I + N    E L T+   
Sbjct: 792  IKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYI-G 850

Query: 223  MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 282
               +V ++A+S D + +L SG+    I +W+ +       +   H N + S+ F  +   
Sbjct: 851  HTNSVYSIAYSPDSK-ILVSGSGDRTIKLWDCQTHICIKTLH-GHTNEVCSVAFSPDGQT 908

Query: 283  LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342
            L   S D S+++W   T     + L+   G++   L + F  + + + S   D+  +L+ 
Sbjct: 909  LACVSLDQSVRLWNCRT----GQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLW- 963

Query: 343  VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402
               D Q+            + +   E        IAF        D   + +   D++  
Sbjct: 964  ---DWQT-----------GKYISSLEGHTDFIYGIAF------SPDSQTLASASTDSSV- 1002

Query: 403  YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462
               RL N   G+   +   E+   V A      G     G+A   ++ +N+ +G    + 
Sbjct: 1003 ---RLWNISTGQ-CFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKT- 1057

Query: 463  LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKI 521
              +SE     H+ +++G+A      L+ SA     +++WD   GR +         +   
Sbjct: 1058 --LSE-----HSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSA 1110

Query: 522  VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 581
            ++     ++AT + D  ++++D    + ++   GHT+ + D  FS DGK L S+  D ++
Sbjct: 1111 IFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTV 1170

Query: 582  RIWDVILAR--QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
            RIWDV   +   I   H  + +++++ SP+ +V+A+   DQ  V +W
Sbjct: 1171 RIWDVNTGKCHHICIGHTHL-VSSVAFSPDGEVVASGSQDQT-VRIW 1215

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/452 (20%), Positives = 185/452 (40%), Gaps = 42/452 (9%)

Query: 157  GSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL 216
            GS + +++LW+IS+   LY  +G  S + S V SP   ++A G  D  + + ++     L
Sbjct: 1050 GSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCL 1109

Query: 217  VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF 276
             T        V  L FS +G  L A+G+S  ++ +W++  ++    + + H N + ++ F
Sbjct: 1110 YTL-QGYTSWVRFLVFSPNGVTL-ANGSSDQIVRLWDISSKKCLYTL-QGHTNWVNAVAF 1166

Query: 277  FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336
              +   L S S D ++++W   ++    + L    GH++    + F  +G  + S   D+
Sbjct: 1167 SPDGATLASGSGDQTVRLWDISSS----KCLYILQGHTSWVNSVVFNPDGSTLASGSSDQ 1222

Query: 337  AFRLFSVIQDQQSRELSQRHVA----------KRARKLKMKEEELKLKPVIAFDCAEIRE 386
              RL+  I   +     Q H +                   ++ ++L  + +  C    +
Sbjct: 1223 TVRLWE-INSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQ 1281

Query: 387  --RDWCNVVTCHMDTAQ---------AYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 435
               +W N V  + D +            +W + +       L     + + V + T S  
Sbjct: 1282 GHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISS----SKCLHTFQGHTSWVSSVTFSPD 1337

Query: 436  GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495
            G     G+    +  +++ SG    ++L         H   V  V       ++ S    
Sbjct: 1338 GTMLASGSDDQTVRLWSISSGECLYTFL--------GHTNWVGSVIFSPDGAILASGSGD 1389

Query: 496  GDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554
              +++W    G+ L +       +  IV+     LLA+ +DD  +RL+++ +   +    
Sbjct: 1390 QTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLH 1449

Query: 555  GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
            GH + +    FS DG  L S   D ++++WDV
Sbjct: 1450 GHINSVRSVAFSSDGLILASGSDDETIKLWDV 1481

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 117/529 (22%), Positives = 207/529 (39%), Gaps = 57/529 (10%)

Query: 106  ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165
            +++I  DG  F  +++ I E  AP+        F PT     D+ + K+    + G +  
Sbjct: 769  LIAIVRDGYRFALSYRMIIEK-APLQAYTSALVFAPT-----DSMIKKIFKKEEPGWIST 822

Query: 166  -------WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218
                   WN  T+      +G GSS+ S   S     VA G  D  I +    +D    T
Sbjct: 823  ISVVEAEWNACTQT----LEGHGSSVLSVAFSADGQRVASGSDDKTIKI----WDTASGT 874

Query: 219  FTHSMRG---AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLH 275
             T ++ G   +V ++AFS D +  +ASG+    I IW+         + E H   + S+ 
Sbjct: 875  GTQTLEGHGGSVWSVAFSPD-RERVASGSDDKTIKIWDAASGTCTQTL-EGHGGRVQSVA 932

Query: 276  FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335
            F  +   + S S D++IK+W  D   G     +   GH +  L + F  +G+ + S   D
Sbjct: 933  FSPDGQRVASGSDDHTIKIW--DAASG--TCTQTLEGHGSSVLSVAFSPDGQRVASGSGD 988

Query: 336  RAFRLFSVIQDQQSREL-----SQRHVAKRARKLKM----KEEELKLKPVIAFDCAEIRE 386
            +  +++       ++ L     S   VA      ++     ++ +K+    +  C +  E
Sbjct: 989  KTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLE 1048

Query: 387  --RDWCNVVTCHMDTAQA------YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438
                W   V    D  +       +  ++ + V G    +    +  +V +   S  G  
Sbjct: 1049 GHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGT-CTQTLEGHGDSVWSVAFSPDGQR 1107

Query: 439  AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 498
               G+  G I+ ++  SG           ++   H G V  VA       + S    G I
Sbjct: 1108 VASGSIDGTIKIWDAASG--------TCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTI 1159

Query: 499  KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGL-LATVADDLVIRLFDVVALRMVRKFEGHT 557
            K+WD          E     V+ V    +G  +A+ + D  I+++D  +    +  EGH 
Sbjct: 1160 KIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219

Query: 558  DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL 606
              +    FS DG+ + S   D +++IWD         ++V  + T LS 
Sbjct: 1220 GWVQSVAFSPDGQRVASGSSDNTIKIWDTASGTCTQTLNVGSTATCLSF 1268

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q55563|Y163_SYNY3 Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0163 PE=4 SV=1

 Score = 79.7 bits (195), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 136/554 (24%), Positives = 218/554 (39%), Gaps = 114/554 (20%)

Query: 103  GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL--DDKFTPTCIMHPDTYLNKVIVGSQE 160
            G+ +L+   DG   +W  +G E  L   GH     + +F+P            ++  S +
Sbjct: 1149 GQILLTASRDGTARLWDLEGREIGLCQ-GHTSWVRNAQFSPDG--------QWIVTCSAD 1199

Query: 161  GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220
            G+ +LW++S++      KG  + +++ + SP    +    SDG   V + R+ + L T  
Sbjct: 1200 GTARLWDLSSQC-FAVLKGHQNWVNNALWSPDGQHIITSSSDGTARVWS-RHGKCLGTLR 1257

Query: 221  ---HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF 277
               H++ GA     FS DGQ ++ + ++     +W  E   L   I   H   +    F 
Sbjct: 1258 GHDHNIHGA----RFSLDGQKIV-TYSTDNTARLWTKEGTLL--TILRGHQKEVYDADFS 1310

Query: 278  ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337
            A+   + + SAD + + W  D +  D   L   +GHS       F   G  +L+  +D+ 
Sbjct: 1311 ADGRFVFTVSADQTARQW--DISQKDTITL---TGHSHWVRNAHFNPKGDRLLTVSRDKT 1365

Query: 338  FRLFS-------VIQDQQS--RELS-----QRHVAKRARKLKMKEEEL--KLKPVIAFDC 381
             RL++       V+ D Q   RE       Q  V   A K       L  KL  +     
Sbjct: 1366 ARLWTTEGECVAVLADHQGWVREGQFSPDGQWIVTGSADKTAQLWNVLGKKLTVLRGHQD 1425

Query: 382  AEIRER---DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438
            A +  R   D   +VT   D   A VW      L   +LR   +N   + A   SA G F
Sbjct: 1426 AVLNVRFSPDSQYIVTASKD-GTARVWNNTGRELA--VLRHYEKN---IFAAEFSADGQF 1479

Query: 439  AVLG----TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494
             V      TAG W E    + GI RG            H G V      + +  +++A  
Sbjct: 1480 IVTASDDNTAGIW-EIVGREVGICRG------------HEGPVYFAQFSADSRYILTASV 1526

Query: 495  HGDIKVWDFKGRDL-----------KSR-------------------WEVGCSLVKIVYH 524
                ++WDF GR L           ++R                   W+     V ++Y 
Sbjct: 1527 DNTARIWDFLGRPLLTLAGHQSIVYQARFSPEGNLIATVSADHTARLWDRSGKTVAVLYG 1586

Query: 525  RVNGLLATV------------ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 572
               GL+ TV            ++D   RL+D+   R +   EGH + +    FS DG+W+
Sbjct: 1587 H-QGLVGTVDWSPDGQMLVTASNDGTARLWDLSG-RELLTLEGHGNWVRSAEFSPDGRWV 1644

Query: 573  LSSGMDGSLRIWDV 586
            L+S  DG+ ++W V
Sbjct: 1645 LTSSADGTAKLWPV 1658

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 8/194 (4%)

Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213
           ++ GSQ GSL++W++   K L    G  +++ S    P  D VA G  D  I + +VR  
Sbjct: 78  IVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRK 137

Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS 273
             +  +    + AV  L FS DG+  LAS +    + +W+L   ++ + + E H   +  
Sbjct: 138 GCVFRYKGHTQ-AVRCLRFSPDGK-WLASASDDHSVKLWDLTAGKMMAELSE-HKGPVNI 194

Query: 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333
           + F  NE +L S SAD +++ W  +      +L+    G + P   I F ++G  I   G
Sbjct: 195 IEFHPNEYLLASGSADRTVRFWDLEKF----QLIGCTEGETIPVRAILFSSDGGCIFCGG 250

Query: 334 QDRAFRLFSVIQDQ 347
           +D A R++    DQ
Sbjct: 251 RD-ALRVYGWEPDQ 263

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus tropicalis (taxid: 8364)

>sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 16/235 (6%)

Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITANIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                S + +C  +P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  + Q+     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQ-QTTTFAGHTGDVMSLSLAPDTRLFVSGACDASAK 209

Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	809
225440418	905	PREDICTED: uncharacterized WD repeat-con	0.928	0.829	0.847	0.0
255587831	906	WD-repeat protein, putative [Ricinus com	0.934	0.834	0.846	0.0
224087343	910	predicted protein [Populus trichocarpa]	0.933	0.829	0.834	0.0
356527435	907	PREDICTED: WD repeat-containing protein	0.929	0.829	0.822	0.0
356496224	906	PREDICTED: uncharacterized WD repeat-con	0.929	0.830	0.812	0.0
18412751	910	transducin/WD40 domain-containing protei	0.936	0.832	0.787	0.0
297813873	911	transducin family protein [Arabidopsis l	0.936	0.832	0.789	0.0
449507519	891	PREDICTED: uncharacterized WD repeat-con	0.913	0.829	0.805	0.0
449470306	891	PREDICTED: uncharacterized WD repeat-con	0.913	0.829	0.805	0.0
4325344	931	similar to beta-transducins (Pfam: PF004	0.936	0.814	0.758	0.0

>gi|225440418|ref|XP_002269448.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07 isoform 1 [Vitis vinifera] gi|297740341|emb|CBI30523.3| unnamed protein product [Vitis vinifera]

 Score = 1353 bits (3502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/754 (84%), Positives = 703/754 (93%), Gaps = 3/754 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKA+ IYNCAKLNLVLVGPQLPKKIR
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAWQIYNCAKLNLVLVGPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRDYTFAAYGN IAV KRAHQVATWSRH+AKVNLLLLFGE ILSID+ GNMF+WAF
Sbjct: 61  ALASYRDYTFAAYGNDIAVFKRAHQVATWSRHNAKVNLLLLFGEQILSIDVGGNMFMWAF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGI++NLAP+GHV L+DKF+P+CIMHPDTYLNKVI+GS+EGSLQLWNISTK+KLYEFKGW
Sbjct: 121 KGIQQNLAPIGHVMLEDKFSPSCIMHPDTYLNKVILGSEEGSLQLWNISTKQKLYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            SSI  CVSSPALDVVAVGC+DG IH+HN+RYDEE+VTF+HS RGAVTAL+FS+DG+PL+
Sbjct: 181 KSSICCCVSSPALDVVAVGCADGTIHIHNIRYDEEIVTFSHSTRGAVTALSFSTDGRPLV 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKRRLQSVIREAHD++IISLHFFANEPVLMS+SADNSIKMWIFDT+
Sbjct: 241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIISLHFFANEPVLMSSSADNSIKMWIFDTS 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCI FYANGRH+LSAGQDRAFRLFSVIQDQQSRELSQRHV KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCISFYANGRHVLSAGQDRAFRLFSVIQDQQSRELSQRHVTKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEE+KLKPVIAFD AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLRVKEEEIKLKPVIAFDFAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PEN + VKAC ISACGNFAVLGTAGGWIERFNLQSGISRGSY+D+SER + AH+GEVVGV
Sbjct: 421 PENQSPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGSYVDLSERRSCAHDGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGDIKVWDFKGR+LKSRWE+GC++VKIVYHR NGLLAT  DDLVIR
Sbjct: 481 ACDSTNTLMISAGYHGDIKVWDFKGRELKSRWEIGCAVVKIVYHRSNGLLATATDDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALRMVRKFEGH DR+TD CFSEDGKWLL+S MDG+LRIWDVILARQIDAIHVDVS
Sbjct: 541 LFDVVALRMVRKFEGHIDRVTDLCFSEDGKWLLTSSMDGTLRIWDVILARQIDAIHVDVS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           +TALSLSPNMDVLAT HVDQNGVYLWVN+ MFSG SNIDSYASGKE+VSVK+PSVSS EG
Sbjct: 601 VTALSLSPNMDVLATTHVDQNGVYLWVNQTMFSGSSNIDSYASGKEVVSVKLPSVSSTEG 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
              ++S +PD++      +D F  P F ++IPDLVTLSLLPKSQWQSLINLDIIK RNKP
Sbjct: 661 SH-KDSEKPDLNHLQF--RDDFQNPHFHEKIPDLVTLSLLPKSQWQSLINLDIIKIRNKP 717

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKE 754
           IEPP K EKAPFFLPSVP+LSG+I+F+PSE + E
Sbjct: 718 IEPPTKAEKAPFFLPSVPTLSGQIVFEPSEISSE 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587831|ref|XP_002534411.1| WD-repeat protein, putative [Ricinus communis] gi|223525346|gb|EEF27972.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1350 bits (3494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/758 (84%), Positives = 706/758 (93%), Gaps = 2/758 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYIT+SVPFSVQRLGTE FVTVSVGKAF +YNCAKLNLVLV PQLP KIR
Sbjct: 1   MGIFEPFRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVSPQLPHKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRD+TFAAY NHIAV KR+ QVATWSRHSAKVNLLLLFG+HI+S+D++GNMFIW F
Sbjct: 61  ALASYRDFTFAAYANHIAVFKRSQQVATWSRHSAKVNLLLLFGDHIISVDVNGNMFIWGF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIE NLAP+GH+ LD+ FTPTC+MHPDTYLNKV+VGSQEG+LQLWNISTKKKLYEFKGW
Sbjct: 121 KGIENNLAPIGHIMLDNNFTPTCLMHPDTYLNKVVVGSQEGTLQLWNISTKKKLYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            S I+SCVSSPALDV+AVGC+DGKIHVHN++ D+ELVTF+HS RGAVTAL FS+DGQPLL
Sbjct: 181 NSGITSCVSSPALDVIAVGCADGKIHVHNIQCDDELVTFSHSTRGAVTALCFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG+SSGVISIWNLEKRRLQ+VIREAHDN+IISLHFFANEPVLMS SADNSIKMWIFDTT
Sbjct: 241 ASGSSSGVISIWNLEKRRLQTVIREAHDNSIISLHFFANEPVLMSGSADNSIKMWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPP CIRFYANGRHILSAGQDRAFRLFS+IQDQQSRELSQRH++KR
Sbjct: 301 DGDPRLLRFRSGHSAPPHCIRFYANGRHILSAGQDRAFRLFSIIQDQQSRELSQRHISKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC
Sbjct: 361 AKKLRLKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKACTISACGNFAV+GTAGGWIERFNLQSGISRGSY+D+SE+S+ AH GEVVGV
Sbjct: 421 PENPTPVKACTISACGNFAVIGTAGGWIERFNLQSGISRGSYVDVSEKSSCAHEGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGD+KVWDFKG +LKSRWEVGCSLV+IVYHR+NGLLATVADDLVIR
Sbjct: 481 ACDSTNTLMISAGYHGDVKVWDFKGLELKSRWEVGCSLVQIVYHRLNGLLATVADDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALRMVRKFEGHTDR+TD CFSEDGKWLLSS MDG+LRIWDVILARQIDAIHVDV 
Sbjct: 541 LFDVVALRMVRKFEGHTDRVTDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDAIHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLS N+D+LAT HVDQNGVYLWVN+ MFSG S++DSYASGKE+VSVKMPSVSSVEG
Sbjct: 601 ITALSLSQNLDILATTHVDQNGVYLWVNQSMFSGVSSVDSYASGKEVVSVKMPSVSSVEG 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
            + ++S +P +  T      +  LP F QQ+P+LVTLSLLP+SQWQ LINLDIIK RNKP
Sbjct: 661 SEAQDSDKPTMQPTQY--DGASHLPVFNQQMPELVTLSLLPRSQWQGLINLDIIKVRNKP 718

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTES 758
           IEPPKKPE APFFLPS+PSLSGEILFKPSE+  E+  +
Sbjct: 719 IEPPKKPENAPFFLPSIPSLSGEILFKPSETMNEEKNT 756

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087343|ref|XP_002308129.1| predicted protein [Populus trichocarpa] gi|222854105|gb|EEE91652.1| predicted protein [Populus trichocarpa]

 Score = 1348 bits (3488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/760 (83%), Positives = 698/760 (91%), Gaps = 5/760 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYIT+ VPFSVQRLGTE FVTVSVGKAF +YNCAKL LV+V PQLP KIR
Sbjct: 1   MGIFEPFRAIGYITTGVPFSVQRLGTETFVTVSVGKAFQVYNCAKLTLVIVSPQLPHKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALA YRD+TF AY  HIAV KRAHQV  WSRHSAKVN L++FG++++S+D+DGN+FIW F
Sbjct: 61  ALACYRDFTFVAYATHIAVFKRAHQVTLWSRHSAKVNSLMVFGDYVISVDVDGNLFIWGF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KG++E+  PVGH+   DKFTPTC+MHPDTYLNKV++GSQEG LQLWN+STKK LYEFKGW
Sbjct: 121 KGLDESNVPVGHILFGDKFTPTCMMHPDTYLNKVLIGSQEGGLQLWNVSTKKMLYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
           GSS++SCVSSPALDVVAVGC DGKIHVHN+RYDEE+VTF HSMRGAVT+L+FS+DGQPLL
Sbjct: 181 GSSVTSCVSSPALDVVAVGCVDGKIHVHNIRYDEEVVTFVHSMRGAVTSLSFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKR+LQSV+REAHD++IISLHF ANEPVLMS+SADNSIK+WIFDTT
Sbjct: 241 ASGGSSGVISIWNLEKRKLQSVVREAHDSSIISLHFLANEPVLMSSSADNSIKIWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV+GEHILRPC
Sbjct: 361 AKKLRVKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVIGEHILRPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PEN T VKACTISACGNFA+LGTAGGWIERFNLQSGISRGSY+D+SER + AH  EVVGV
Sbjct: 421 PENLTPVKACTISACGNFAILGTAGGWIERFNLQSGISRGSYMDVSERGSCAHESEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNT MISAGYHGD+KVWDFKGR LKSRWEVGCSLVKIVYHR+NGLLATVADD VIR
Sbjct: 481 ACDSTNTQMISAGYHGDVKVWDFKGRALKSRWEVGCSLVKIVYHRLNGLLATVADDFVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFD VALRMVRKFEGH DRITD CFSEDGKWLLSS MDG+LRIWDVILARQIDA+HVDVS
Sbjct: 541 LFDAVALRMVRKFEGHADRITDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDAVHVDVS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMDVLAT HVDQNGVYLWVN+ MFSG SNIDSYASGKE+V+VK+PS+SSVEG
Sbjct: 601 ITALSLSPNMDVLATTHVDQNGVYLWVNQSMFSGASNIDSYASGKEVVNVKLPSLSSVEG 660

Query: 661 --CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARN 718
              ++E++ +P V+++  V  +    P F QQIPDLVTLSLLPKSQWQSLINLDIIK RN
Sbjct: 661 SNVENEDTEKPIVNQS--VSNEVSTFPAFSQQIPDLVTLSLLPKSQWQSLINLDIIKVRN 718

Query: 719 KPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTK-EDTE 757
           KPIEPPKKPEKAPFFLPSVPSLSGEILFKPSE    EDT+
Sbjct: 719 KPIEPPKKPEKAPFFLPSVPSLSGEILFKPSEPVDGEDTK 758

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527435|ref|XP_003532316.1| PREDICTED: WD repeat-containing protein 36-like [Glycine max]

 Score = 1317 bits (3408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/756 (82%), Positives = 690/756 (91%), Gaps = 4/756 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIG ITSSVPFSVQRLGTE F+TVSVGKAF ++NCAKLNLVLVGPQLPKKI 
Sbjct: 1   MGIFEPYRAIGCITSSVPFSVQRLGTETFLTVSVGKAFQVFNCAKLNLVLVGPQLPKKIS 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYGN+IAV KRAHQVATWS H+AKV LLLLFG+HI+S+D  GNMF+W F
Sbjct: 61  ALASYREYTFAAYGNNIAVFKRAHQVATWSSHNAKVKLLLLFGDHIVSVDARGNMFLWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGI+ENL P GH+ LD+KF+P+CIMHPDTYLNKV+VGS++G +QLWNISTKKK++EFKGW
Sbjct: 121 KGIDENLFPFGHIMLDEKFSPSCIMHPDTYLNKVLVGSEQGPMQLWNISTKKKIFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            S IS CVSSPALDVVA+GC+DG+IHVHN+RYDEELVTFTHS RG+VTAL+FS+DGQPLL
Sbjct: 181 NSPISCCVSSPALDVVAIGCTDGRIHVHNIRYDEELVTFTHSTRGSVTALSFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEK+RLQSV+REAHD+ I SLHFFANEPVLMS+SADNSIKMWIFDT+
Sbjct: 241 ASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVLMSSSADNSIKMWIFDTS 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCI+FYANGRHILSAGQDRAFRLFSV+QDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL PC
Sbjct: 361 AKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILNPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNF  LGTAGGWIERFNLQSGI RG+Y+D+SE  N AH+GEVVGV
Sbjct: 421 PENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGIRRGAYIDISESRNCAHDGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGY GDIKVW+FK RDLK+RW+V CS+VKIVYHR NGLLATVADDL I+
Sbjct: 481 ACDSTNTLMISAGYKGDIKVWNFKERDLKTRWDVDCSIVKIVYHRYNGLLATVADDLTIQ 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALR+VRKFEGHTDRITD CFSEDGKWLLSS MDGSLRIWDVILARQIDAIHVDV 
Sbjct: 541 LFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMD+LATAHVDQ+G+YLWVN+ MFS  SN+DSYASGKE+VSVK+PS+SS E 
Sbjct: 601 ITALSLSPNMDILATAHVDQSGIYLWVNQAMFSSTSNVDSYASGKEVVSVKLPSISSAEH 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
            +DE+  +P        PKD+    T  +QIP+LVTLSLLPKSQW +LINLDIIK RNKP
Sbjct: 661 SRDEHYDEP---MNASQPKDALYFSTQDKQIPELVTLSLLPKSQWLNLINLDIIKVRNKP 717

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSE-STKED 755
           IEPPKKPEKAPFFLPSVPSLSGEILF+  + S KE+
Sbjct: 718 IEPPKKPEKAPFFLPSVPSLSGEILFESGKLSLKEN 753

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496224|ref|XP_003516969.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Glycine max]

 Score = 1303 bits (3373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/756 (81%), Positives = 687/756 (90%), Gaps = 4/756 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIG ITSSVPFSVQRLGTE F+TVSVGKAF I+NCAKLNLVLVGPQLPKKI 
Sbjct: 1   MGIFEPYRAIGCITSSVPFSVQRLGTETFLTVSVGKAFQIFNCAKLNLVLVGPQLPKKIS 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYGN+IAV KRAHQ ATWS H+AKV LLLLFG+HI+S+D  GNMF+W F
Sbjct: 61  ALASYREYTFAAYGNNIAVFKRAHQFATWSSHNAKVKLLLLFGDHIVSVDARGNMFLWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGI+EN  P GH+ LD+KF+P+CIMHPDTYLNKV++GS++G +QLWNISTKKK++EFKGW
Sbjct: 121 KGIDENHVPFGHIMLDEKFSPSCIMHPDTYLNKVLIGSEQGPMQLWNISTKKKIFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            S IS CVSSPALDVVA+GC+DG+IHVHN+RYDEELVTFTHS RG+VT+L+FS+DGQPLL
Sbjct: 181 NSPISCCVSSPALDVVAIGCTDGRIHVHNIRYDEELVTFTHSTRGSVTSLSFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEK+RLQSV+REAHD+ I SLHFFANEPVLMS+SADNS+KMWIFDT+
Sbjct: 241 ASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVLMSSSADNSVKMWIFDTS 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPP C++FYANGRHILSAGQDRAFRLFSV+QDQQSRELSQ HV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPFCLKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQWHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           ARKLK+KEEE+KLKP+IAFDCAEIRERDWCNVVTCHMDTAQAY+WRLQNFVLGEHIL PC
Sbjct: 361 ARKLKLKEEEIKLKPMIAFDCAEIRERDWCNVVTCHMDTAQAYLWRLQNFVLGEHILNPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNF  LGTAGGWIERFNLQSGI RG+Y+D+SE  + AH+GEVVGV
Sbjct: 421 PENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGICRGAYIDISESRSCAHDGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGY GDIKVWDFK RDLK++W+VGCS+VKIVYHR NGLLATVADDL IR
Sbjct: 481 ACDSTNTLMISAGYEGDIKVWDFKERDLKTKWDVGCSVVKIVYHRYNGLLATVADDLTIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALR+VRKFEGHTDRITD CFSEDGKWLLSS MDGSLRIWDVILARQIDAI VD S
Sbjct: 541 LFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIQVDAS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMD+LAT HVDQNG+YLWVN+ MFS  SN+DS ASGKE+VSV +PS+SS E 
Sbjct: 601 ITALSLSPNMDILATTHVDQNGIYLWVNQAMFSSTSNVDSCASGKEVVSVTLPSISSAEH 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
            +DE+  +P V+ +   PKD+   PT  +QIP+LVTLSLLPKSQWQ+LINLDIIK RNKP
Sbjct: 661 SRDEHYDEP-VNASQ--PKDALHFPTQDKQIPELVTLSLLPKSQWQNLINLDIIKVRNKP 717

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSE-STKED 755
            EPPKKPEKAPFFLPSVPSLSGEILF+  + S KE+
Sbjct: 718 TEPPKKPEKAPFFLPSVPSLSGEILFESGKLSIKEN 753

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412751|ref|NP_567275.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|16604679|gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gi|20465603|gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gi|332657045|gb|AEE82445.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score = 1303 bits (3373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/770 (78%), Positives = 702/770 (91%), Gaps = 12/770 (1%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++ PQLPKKIR
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRDYTF A+GN IAV +RAHQVATWS+H AKV+LLL+FGEH+LS+D++GNMFIWAF
Sbjct: 61  ALASYRDYTFVAFGNEIAVFRRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEGNMFIWAF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIEE+LAP+G+++L  KFTPT I+HPDTYLNKV+VGSQEG LQLWNI+TKK LY+FKGW
Sbjct: 121 KGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQEGPLQLWNINTKKMLYQFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
           GSS++SCVSSPALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS+DG+PLL
Sbjct: 181 GSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+KMWIFDT 
Sbjct: 241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTN 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELSQRH+++R
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY DMSE+  YAH+GEV+GV
Sbjct: 421 PENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLVKIVYHRVNGLLATVADD VIR
Sbjct: 481 ACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLATVADDFVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           L+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDGSLRIWDVILA+QID +HVDV 
Sbjct: 541 LYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQIDGVHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYASGK++V+VK+PSVS++  
Sbjct: 601 ITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYASGKDVVNVKLPSVSALTS 660

Query: 661 CQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNK 719
            + D++  +  +  ++ +   SF +   ++QIP+LVTLSLLPKSQWQSLINLDIIKARNK
Sbjct: 661 SEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLSLLPKSQWQSLINLDIIKARNK 718

Query: 720 PIEPPKKPEKAPFFLPSVPSLSGEILFKPS---------ESTKEDTESLK 760
           PIEPPKKPEKAPFFLPS+PSLSG+ILFK +         E+ K+D  S+K
Sbjct: 719 PIEPPKKPEKAPFFLPSIPSLSGDILFKANDSEADGENEENNKKDQNSMK 768

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813873|ref|XP_002874820.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297320657|gb|EFH51079.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1286 bits (3329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/771 (78%), Positives = 702/771 (91%), Gaps = 13/771 (1%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++ PQLPKKIR
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRDYTFAA+GN IAV KRAHQVATWS+H AKV+LLLLFGEH+LS+D++GNMFIWAF
Sbjct: 61  ALASYRDYTFAAFGNEIAVFKRAHQVATWSKHVAKVDLLLLFGEHVLSLDVEGNMFIWAF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIEE+L+P+G+++L  KFTP+ I+HPDTYLNKV+VGSQEG LQLWNI+TKK +YEFKGW
Sbjct: 121 KGIEEHLSPIGNLQLTGKFTPSSIVHPDTYLNKVLVGSQEGPLQLWNINTKKMIYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
           GSS+SSCVSSPALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS+DG+PLL
Sbjct: 181 GSSVSSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+KMWIFDT 
Sbjct: 241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTN 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELSQRH+++R
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++K+EELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLRLKDEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY DMSE+  YAH+GEV+GV
Sbjct: 421 PENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGDIKVWDFK R+LKS+W++GCSLVKIVYHRVNGLLATVADD VIR
Sbjct: 481 ACDSTNTLMISAGYHGDIKVWDFKKRELKSQWDIGCSLVKIVYHRVNGLLATVADDFVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           L+DVVAL+MVR+F GHTDR+TD CFSEDGKWLLSS MDGSLRIWDVILA+QID +HVDV 
Sbjct: 541 LYDVVALKMVREFRGHTDRVTDLCFSEDGKWLLSSSMDGSLRIWDVILAKQIDGVHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYASGK++V+VK+PSVS++  
Sbjct: 601 ITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYASGKDVVNVKLPSVSALTS 660

Query: 661 CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARN 718
            +  D++  +  +  +  +   SF +    +QIP+LVTLSLLPKSQWQSLINLDIIKARN
Sbjct: 661 SEADDDDMERQVLENSGALQASSFSIS--HKQIPELVTLSLLPKSQWQSLINLDIIKARN 718

Query: 719 KPIEPPKKPEKAPFFLPSVPSLSGEILFKPSES---------TKEDTESLK 760
           KPIEPPKKPEKAPFFLPS+PSLSG+ILFK ++S          K+D  S+K
Sbjct: 719 KPIEPPKKPEKAPFFLPSIPSLSGDILFKSNDSEADGENEEKNKKDQNSMK 769

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507519|ref|XP_004163055.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Cucumis sativus]

 Score = 1277 bits (3304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/757 (80%), Positives = 671/757 (88%), Gaps = 18/757 (2%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIGYIT+SVPFSVQRLGTE FVTVSVGKAF +YNCAKLNLVLVGPQLPKKIR
Sbjct: 1   MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYG+ IAV KRAHQVA WS H AKVNLLLLFG+HILS+DI+GNMF+W F
Sbjct: 61  ALASYREYTFAAYGSDIAVFKRAHQVANWSSHKAKVNLLLLFGDHILSVDINGNMFMWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIE++ +PVG V L  KF+P+CIMHPDTYLNKVI+GS EGSL+LWNIS+KKKL+EFKGW
Sbjct: 121 KGIEDSQSPVGQVILGRKFSPSCIMHPDTYLNKVILGSLEGSLELWNISSKKKLFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            SS+  CVSSPALDVVA+GC+DGK+HVHN+RYD+EL +FTHS RG+VTAL+FSSDGQPLL
Sbjct: 181 NSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKRRLQSVIREAHD++I+SLHFFANEPVLMS+SADNSIKMWIFDTT
Sbjct: 241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVLMSSSADNSIKMWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCH+DT QAYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTPQAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNFA LGT GGWIERFNLQSG SRGSYLD  E  + AH GEVVG+
Sbjct: 421 PENPTPVKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKMEGGSCAHVGEVVGL 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNT +ISAG HGDIKVW+FK RDLKSRWE+G S+ KIVYHRVNGLLA V DDLVIR
Sbjct: 481 ACDSTNTHVISAGVHGDIKVWNFKERDLKSRWEIGSSVAKIVYHRVNGLLAVVTDDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFD+VALR+VRKFEGHTDRITD  FSEDGKWLLSS MDGSLRIWDVILARQIDA+HVD S
Sbjct: 541 LFDIVALRLVRKFEGHTDRITDLSFSEDGKWLLSSSMDGSLRIWDVILARQIDALHVDAS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITA S+SPNMD+LAT HVDQNGVYLWVN+ MF+G SN+++ ASG E            E 
Sbjct: 601 ITAFSISPNMDILATTHVDQNGVYLWVNQLMFTGSSNVNTLASGMEF-----------ED 649

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
             +  S+ P+        KD   L    QQIPDL+TLSLLP+SQWQSLINLDIIK RNKP
Sbjct: 650 RVENPSNLPE-------SKDLSCLSISTQQIPDLITLSLLPRSQWQSLINLDIIKVRNKP 702

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTE 757
           IEPPKKPEKAPFFLPS+PSLSGEILFKPSES  ++ E
Sbjct: 703 IEPPKKPEKAPFFLPSLPSLSGEILFKPSESANKEGE 739

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470306|ref|XP_004152858.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Cucumis sativus]

 Score = 1277 bits (3304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/757 (80%), Positives = 671/757 (88%), Gaps = 18/757 (2%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIGYIT+SVPFSVQRLGTE FVTVSVGKAF +YNCAKLNLVLVGPQLPKKIR
Sbjct: 1   MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYG+ IAV KRAHQVA WS H AKVNLLLLFG+HILS+DI+GNMF+W F
Sbjct: 61  ALASYREYTFAAYGSDIAVFKRAHQVANWSSHKAKVNLLLLFGDHILSVDINGNMFMWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIE++ +PVG V L  KF+P+CIMHPDTYLNKVI+GS EGSL+LWNIS+KKKL+EFKGW
Sbjct: 121 KGIEDSQSPVGQVILGRKFSPSCIMHPDTYLNKVILGSLEGSLELWNISSKKKLFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            SS+  CVSSPALDVVA+GC+DGK+HVHN+RYD+EL +FTHS RG+VTAL+FSSDGQPLL
Sbjct: 181 NSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKRRLQSVIREAHD++I+SLHFFANEPVLMS+SADNSIKMWIFDTT
Sbjct: 241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVLMSSSADNSIKMWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCH+DT QAYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTPQAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNFA LGT GGWIERFNLQSG SRGSYLD  E  + AH GEVVG+
Sbjct: 421 PENPTPVKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKMEGGSCAHVGEVVGL 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNT +ISAG HGDIKVW+FK RDLKSRWE+G S+ KIVYHRVNGLLA V DDLVIR
Sbjct: 481 ACDSTNTHVISAGVHGDIKVWNFKERDLKSRWEIGSSVAKIVYHRVNGLLAVVTDDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFD+VALR+VRKFEGHTDRITD  FSEDGKWLLSS MDGSLRIWDVILARQIDA+HVD S
Sbjct: 541 LFDIVALRLVRKFEGHTDRITDLSFSEDGKWLLSSSMDGSLRIWDVILARQIDALHVDAS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITA S+SPNMD+LAT HVDQNGVYLWVN+ MF+G SN+++ ASG E            E 
Sbjct: 601 ITAFSISPNMDILATTHVDQNGVYLWVNQLMFTGSSNVNTLASGMEF-----------ED 649

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
             +  S+ P+        KD   L    QQIPDL+TLSLLP+SQWQSLINLDIIK RNKP
Sbjct: 650 RVENPSNLPE-------SKDLSCLSISTQQIPDLITLSLLPRSQWQSLINLDIIKVRNKP 702

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTE 757
           IEPPKKPEKAPFFLPS+PSLSGEILFKPSES  ++ E
Sbjct: 703 IEPPKKPEKAPFFLPSLPSLSGEILFKPSESANKEGE 739

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4325344|gb|AAD17343.1| similar to beta-transducins (Pfam: PF00400, Score=71.7, E=1.5e-17, N=6) [Arabidopsis thaliana] gi|7267253|emb|CAB81036.1| putative WD-repeat membrane protein [Arabidopsis thaliana]

 Score = 1270 bits (3287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/791 (75%), Positives = 696/791 (87%), Gaps = 33/791 (4%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKK-- 58
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++         
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISKFFLLLKP 60

Query: 59  -----IRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDG 113
                IRALASYRDYTF A+GN IAV +RAHQVATWS+H AKV+LLL+FGEH+LS+D++G
Sbjct: 61  KLPKKIRALASYRDYTFVAFGNEIAVFRRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEG 120

Query: 114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173
           NMFIWAFKGIEE+LAP+G+++L  KFTPT I+HPDTYLNKV+VGSQEG LQLWNI+TKK 
Sbjct: 121 NMFIWAFKGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQEGPLQLWNINTKKM 180

Query: 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS 233
           LY+FKGWGSS++SCVSSPALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS
Sbjct: 181 LYQFKGWGSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFS 240

Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
           +DG+PLLASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+K
Sbjct: 241 TDGRPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLK 300

Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELS 353
           MWIFDT DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELS
Sbjct: 301 MWIFDTNDGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELS 360

Query: 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413
           QRH+++RA+KL++KEEELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLG
Sbjct: 361 QRHISRRAKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLG 420

Query: 414 EHILRPCPENPTAVK--------------ACTISACGNFAVLGTAGGWIERFNLQSGISR 459
           EHIL+PCPENPT +K              AC ISACGNFAV+GTAGGWIERFNLQSGISR
Sbjct: 421 EHILKPCPENPTPIKGVFVSRNHLLLAILACAISACGNFAVVGTAGGWIERFNLQSGISR 480

Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV 519
           GSY DMSE+  YAH+GEV+GVACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLV
Sbjct: 481 GSYFDMSEKRRYAHDGEVIGVACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLV 540

Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579
           KIVYHRVNGLLATVADD VIRL+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDG
Sbjct: 541 KIVYHRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDG 600

Query: 580 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNID 639
           SLRIWDVILA+QID +HVDV ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++
Sbjct: 601 SLRIWDVILAKQIDGVHVDVPITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVE 660

Query: 640 SYASGKEIVSVKMPSVSSVEGCQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLS 698
           SYASGK++V+VK+PSVS++   + D++  +  +  ++ +   SF +   ++QIP+LVTLS
Sbjct: 661 SYASGKDVVNVKLPSVSALTSSEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLS 718

Query: 699 LLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPS--------- 749
           LLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPS+PSLSG+ILFK +         
Sbjct: 719 LLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSIPSLSGDILFKANDSEADGENE 778

Query: 750 ESTKEDTESLK 760
           E+ K+D  S+K
Sbjct: 779 ENNKKDQNSMK 789

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	809
TAIR|locus:2135393	910	AT4G04940 "AT4G04940" [Arabido	0.936	0.832	0.757	0.0
UNIPROTKB|F1RLI4	952	WDR36 "Uncharacterized protein	0.887	0.754	0.376	1.7e-135
UNIPROTKB|G3X6I6	948	WDR36 "Uncharacterized protein	0.886	0.756	0.383	2.3e-135
UNIPROTKB|F1NKR5	890	WDR36 "Uncharacterized protein	0.885	0.804	0.378	5.4e-134
UNIPROTKB|Q8NI36	951	WDR36 "WD repeat-containing pr	0.886	0.753	0.368	2.1e-132
UNIPROTKB|F1PNT8	891	WDR36 "Uncharacterized protein	0.886	0.804	0.373	2.7e-132
RGD|1586463	882	Wdr36 "WD repeat domain 36" [R	0.906	0.831	0.367	3.5e-130
ZFIN|ZDB-GENE-030131-464	904	wdr36 "WD repeat domain 36" [D	0.904	0.809	0.365	2.2e-128
POMBASE|SPCC1672.07	902	SPCC1672.07 "U3 snoRNP-associa	0.891	0.799	0.360	3.3e-127
FB|FBgn0038146	922	CG9799 [Drosophila melanogaste	0.911	0.799	0.332	3.4e-109

TAIR|locus:2135393 AT4G04940 "AT4G04940" [Arabidopsis thaliana (taxid:3702)]

 Score = 3108 (1099.1 bits), Expect = 0., P = 0.
 Identities = 578/763 (75%), Positives = 669/763 (87%)

Query:     1 MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++ PQLPKKIR
Sbjct:     1 MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
             ALASYRDYTF A+GN IAV +RAHQVATWS+H AKV+LLL+FGEH+LS+D++GNMFIWAF
Sbjct:    61 ALASYRDYTFVAFGNEIAVFRRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEGNMFIWAF 120

Query:   121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
             KGIEE+LAP+G+++L  KFTPT I+HPDTYLNKV+VGSQEG LQLWNI+TKK LY+FKGW
Sbjct:   121 KGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQEGPLQLWNINTKKMLYQFKGW 180

Query:   181 GXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
             G         PALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS+DG+PLL
Sbjct:   181 GSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240

Query:   241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
             ASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+KMWIFDT 
Sbjct:   241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTN 300

Query:   301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
             DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELSQRH+++R
Sbjct:   301 DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR 360

Query:   361 ARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
             A+            PV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLGEHIL+PC
Sbjct:   361 AKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC 420

Query:   421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
             PENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY DMSE+  YAH+GEV+GV
Sbjct:   421 PENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480

Query:   481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
             ACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLVKIVYHRVNGLLATVADD VIR
Sbjct:   481 ACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLATVADDFVIR 540

Query:   541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
             L+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDGSLRIWDVILA+QID +HVDV 
Sbjct:   541 LYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQIDGVHVDVP 600

Query:   601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
             ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYASGK++V+VK+PSVS++  
Sbjct:   601 ITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYASGKDVVNVKLPSVSALTS 660

Query:   661 CQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNX 719
              + D++  +  +  ++ +   SF +   ++QIP+LVTLSLLPKSQWQSLINLDIIKARN 
Sbjct:   661 SEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLSLLPKSQWQSLINLDIIKARNK 718

Query:   720 XXXXXXXXXXAPFFLPSVPSLSGEILFKP--SESTKEDTESLK 760
                       APFFLPS+PSLSG+ILFK   SE+  E+ E+ K
Sbjct:   719 PIEPPKKPEKAPFFLPSIPSLSGDILFKANDSEADGENEENNK 761

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|F1RLI4 WDR36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1304 (464.1 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
 Identities = 282/750 (37%), Positives = 425/750 (56%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ +P  V+   L    FVT  VGK+ H Y+  KL+LV V   LP+ I 
Sbjct:    69 LFAGFRALGLFSNDIPHVVRFSALKRRFFVTTCVGKSLHTYDVQKLSLVAVSNSLPQDIC 128

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  +V  T+  H A+++LL  FG+H++S+D D  + IW 
Sbjct:   129 CMAADGRLVFAAYGNVFSAFARNKEVVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWH 188

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F 
Sbjct:   189 IYSEEEYL----QLSFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFA 244

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVAVG   G++ +HN+++DE L+ F     G +T+++F +DG P
Sbjct:   245 GWKTGVTALQQAPAVDVVAVGLMSGQVIIHNIKFDETLMKFRQDW-GPITSISFRTDGHP 303

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   304 VMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFD 363

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS I ++ ++ L    +
Sbjct:   364 GPTGEGRLLRFRMGHSAPLTKIRYYGQNGQQILSASQDGTLQSFSTIHEKFNKSLGHGLI 423

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E RE DW  ++ CH        W  Q   +G +
Sbjct:   424 NKKRVKRKGLQNAMTVRLPPITEFAAEEARESDWDGIIACHQGKLSCSTWNYQRSTIGAY 483

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P    ++     A  I++CGNFAV+G + G I+ +N+QSGI RGS+       + AH
Sbjct:   484 FLKPKELKKDDITATAVDITSCGNFAVIGLSSGTIDVYNMQSGIHRGSF-----GKDQAH 538

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR-VNGLLAT 532
              G + GVA D  N L ISAG  G +K W+FK + L     +  S   ++ HR  +G+L  
Sbjct:   539 KGSIRGVAVDGLNQLTISAGSEGLLKFWNFKNKILIHSVSLDSSPNMMLLHRDSSGILGL 598

Query:   533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
               DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     I
Sbjct:   599 ALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISASMDCSIRTWDLPSGCLI 658

Query:   593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
             D+  +D +   +++SP  D LAT+HVD  G+YLW N  ++S         S + + +  +
Sbjct:   659 DSFLLDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPTDYV 711

Query:   653 PSVSSVEG-CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPD-LVTLSLLPKSQWQSLIN 710
             PSV  + G CQ ++    +   T+  P D        +Q+ + LVTLSLLP+S+W++L+N
Sbjct:   712 PSVVMLPGTCQTQDIELSE-ETTE--PSDEMIAYDSPEQLNEQLVTLSLLPESRWKNLLN 768

Query:   711 LDIIKARNXXXXXXXXXXXAPFFLPSVPSL 740
             LD+IK +N           APFF+P+VP L
Sbjct:   769 LDVIKKKNKPKEPPKVPKSAPFFIPTVPGL 798

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|G3X6I6 WDR36 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
 Identities = 288/751 (38%), Positives = 430/751 (57%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  +S +P +V+   L    +VT  VGK+FH Y+  KL+LV V   LP+ I 
Sbjct:    65 LFAGFRALGLFSSDIPHAVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSLPQDIC 124

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  +V  T+  H A+++LL  FG+H++S+D D  + IW 
Sbjct:   125 CMAADGRLVFAAYGNVFSAFARNKEVVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWH 184

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F 
Sbjct:   185 IYSEEEYL----QLPFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFA 240

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF-SSDGQ 237
             GW          PA+DVVAVG   G++ +HN+++DE L+ F     G +T+++F ++DG 
Sbjct:   241 GWKVGVTALQQAPAVDVVAVGLMSGQVIIHNIKFDETLMKFRQDW-GPITSISFRTADGH 299

Query:   238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
             P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIF
Sbjct:   300 PVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIF 359

Query:   298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
             D   G+ RLLRFR GHSAP   IR+Y  NG+HILSA QD   + FS + ++ ++ L    
Sbjct:   360 DGPAGEGRLLRFRMGHSAPLTRIRYYGQNGQHILSASQDGTLQSFSTVHEKFNKSLGHGL 419

Query:   357 VAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
             + K+   R            PV  F   E RE DW  +V CH        W  Q   +G 
Sbjct:   420 INKKRVKRKGLQNTMSVRLPPVTEFAAEEARESDWDGIVACHQGKLSCSTWNYQRSTIGA 479

Query:   415 HILRPC--PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
             H LRP     + T   A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + A
Sbjct:   480 HFLRPAGLKTDSTTATAVDITSCGNFAVIGLSSGAVDVYNMQSGIHRGSF-----GRDQA 534

Query:   473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
             H G V GVA D  N L I+AG  G +K W+FK + L     +  S   ++ HR +G+L  
Sbjct:   535 HKGSVRGVAVDGLNQLTITAGSEGVLKFWNFKNKVLIHSVSLDSSPNLMLLHRDSGILGL 594

Query:   533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
               DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     I
Sbjct:   595 ALDDFSISVLDIETRKIVREFSGHQGQINDMTFSPDGRWLISASMDCSIRTWDLPSGCLI 654

Query:   593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
             D+  +D +   +++SP  D LAT+HVD  GVYLW N  ++S         S + + +  +
Sbjct:   655 DSFLLDSAPLNVTMSPTGDFLATSHVDHLGVYLWSNISLYS-------VVSLRPLPTDYV 707

Query:   653 PSVSSVEG-CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLI 709
             PSV  + G CQ  D   S+  V  ++ + +  +  P  +Q    LVTLSLLP+S+W++L+
Sbjct:   708 PSVVMLPGTCQTQDVELSEETVEPSEEMIE--YDSP--EQLNEQLVTLSLLPESRWKNLL 763

Query:   710 NLDIIKARNXXXXXXXXXXXAPFFLPSVPSL 740
             NLD+IK +N           APFF+P++P L
Sbjct:   764 NLDVIKKKNKPKEPPKVPKSAPFFIPTIPGL 794

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1NKR5 WDR36 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
 Identities = 285/752 (37%), Positives = 429/752 (57%)

Query:     3 IFEPYKAIGYITSSVPFSVQRLGT--ENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  +S VP  ++  G   E +V  +VG++ H YN  KL +V V   L + I 
Sbjct:     8 LFAGFRALGRYSSHVPHVLRYHGRPREFYVATAVGRSVHTYNVKKLGIVAVSNALLQDIT 67

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              LA+ R   FA+YGN    + R  +V  T+  H A+++LL  FG+HI+S+D+   + +W 
Sbjct:    68 CLAADRMLIFASYGNVFHAIARNKEVVHTYEGHKARIHLLQPFGDHIISVDVANVLIVWD 127

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
              +  EE L     V  D   F  + I+HP TYLNK+++GS++G LQLWNI + K LY F 
Sbjct:   128 IQSEEEYL----QVVFDKATFAVSAILHPSTYLNKILLGSEQGGLQLWNIRSNKLLYSFP 183

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GWG         PA+DV+AVG   G I +HN+++DE L+ F     G +TA++F +DG P
Sbjct:   184 GWGLGVTTLAQAPAVDVIAVGLVSGHIIIHNIKFDETLMKFQQDW-GPITAISFRTDGHP 242

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I++W+LE+++L S +R AH  A+  + F   EP+L++  ADN+I++WIFD
Sbjct:   243 VMAAGSPVGHIALWDLEEKKLMSQMRNAHSTAVAGMSFVPGEPLLITNGADNAIRVWIFD 302

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G  R+LR R GHSAPP  IR++  NG  ILSAGQD   + FS + ++ ++ L +  +
Sbjct:   303 GPGGTGRVLRSRMGHSAPPTKIRYHGQNGEQILSAGQDGTLQSFSTVHERFNKSLGRGSI 362

Query:   358 -AKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
               K+++            P+ AF      + DW  ++ CH        W  Q   +G H 
Sbjct:   363 NKKKSKKKGLQHDTMALPPITAFASEVAHQNDWDGIIACHQGYITCTTWNYQKTSMGAHK 422

Query:   417 LRP---CPENPTAVKACT--ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471
             LRP       P  + A    I+ CGNFAV+G + G ++ +N+QSGI RG Y    E+   
Sbjct:   423 LRPEEFSKNKPIDIYATAVDITTCGNFAVIGMSTGQVDVYNMQSGIHRGRY--GREK--- 477

Query:   472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
             AH G + GVA D  N L I+AG  G IK W FK +DL    ++  S   I+ HR +G+L 
Sbjct:   478 AHEGSIRGVAVDGLNQLTITAGSDGLIKFWKFKAKDLVHSTDLSSSPSGILLHRDSGILG 537

Query:   532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
                DD  I + D+   ++VRKF GH  RI D  FS DG+WL++S MD +++ WD+     
Sbjct:   538 IAFDDFSISVLDIETWKIVRKFSGHHGRINDMTFSPDGRWLITSSMDCTIKTWDLPSGCL 597

Query:   592 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVK 651
             ID   +D +  +L++SP  D LA+AHVD  G+YLW NR ++S         S + + +  
Sbjct:   598 IDCFLLDSAAVSLTMSPTGDFLASAHVDDLGIYLWSNRSIYS-------LVSLRPLPADY 650

Query:   652 MPSVSSVEG-C--QDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSL 708
              PSV ++ G C  QD + ++ +    + +  DS   P  +Q    LVTLSLLP+S+W++L
Sbjct:   651 EPSVITLPGTCPLQDVDVAEGEDKCDEMIEYDS---P--EQLGEQLVTLSLLPESRWKNL 705

Query:   709 INLDIIKARNXXXXXXXXXXXAPFFLPSVPSL 740
             ++LD+IK +N           APFF+P+VP L
Sbjct:   706 LSLDVIKKKNKPREPPKVPTSAPFFIPTVPGL 737

GO:0003824 "catalytic activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

UNIPROTKB|Q8NI36 WDR36 "WD repeat-containing protein 36" [Homo sapiens (taxid:9606)]

 Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
 Identities = 276/750 (36%), Positives = 425/750 (56%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ +P  V+   L    +VT  VGK+FH Y+  KL+LV V   +P+ I 
Sbjct:    69 LFAGFRALGLFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDIC 128

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  ++  T+  H A+++ L  FG+HI+S+D DG + IW 
Sbjct:   129 CMAADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHFLQPFGDHIISVDTDGILIIWH 188

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F 
Sbjct:   189 IYSEEEYL----QLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFP 244

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVA+G   G++ +HN++++E L+ F     G +T+++F +DG P
Sbjct:   245 GWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDW-GPITSISFRTDGHP 303

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   304 VMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFD 363

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS + ++ ++ L    +
Sbjct:   364 GPTGEGRLLRFRMGHSAPLTNIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGLI 423

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E RE DW  ++ CH        W  Q   +G +
Sbjct:   424 NKKRVKRKGLQNTMSVRLPPITKFAAEEARESDWDGIIACHQGKLSCSTWNYQKSTIGAY 483

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + AH
Sbjct:   484 FLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSF-----GKDQAH 538

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533
              G V GVA D  N L ++ G  G +K W+FK + L     +  S   ++ HR +G+L   
Sbjct:   539 KGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPNIMLLHRDSGILGLA 598

Query:   534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
              DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     ID
Sbjct:   599 LDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDCSIRTWDLPSGCLID 658

Query:   594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMP 653
                +D +   +S+SP  D LAT+HVD  G+YLW N  ++S         S + + +  +P
Sbjct:   659 CFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPADYVP 711

Query:   654 SVSSVEG-CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLIN 710
             S+  + G CQ  D   S+  V  +D + +  +  P  +Q    LVTLSLLP+S+W++L+N
Sbjct:   712 SIVMLPGTCQTQDVEVSEETVEPSDELIE--YDSP--EQLNEQLVTLSLLPESRWKNLLN 767

Query:   711 LDIIKARNXXXXXXXXXXXAPFFLPSVPSL 740
             LD+IK +N           APFF+P++P L
Sbjct:   768 LDVIKKKNKPKEPPKVPKSAPFFIPTIPGL 797

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PNT8 WDR36 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 280/750 (37%), Positives = 429/750 (57%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ V   ++   L    FVT    K+FH Y+  KL+LV V   LP+ I 
Sbjct:     9 LFAGFRALGLFSTDVAHVLRFSALKPRFFVTTCGAKSFHTYDVQKLSLVAVSNSLPQDIC 68

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  +V  T+  H A++ LL  FG+H++S+D D  + IW 
Sbjct:    69 CMAADGRLVFAAYGNVFSAFARNKEVVHTYKGHKAEIRLLQPFGDHVISVDTDSVLIIWH 128

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++G+LQLWNI + K LY F+
Sbjct:   129 IYSEEEYL----QLTFDKSVFKISAILHPSTYLNKILLGSEQGTLQLWNIKSNKLLYTFQ 184

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVAVG + G++ +HN+++DE L+ F     G +T+++F +DG P
Sbjct:   185 GWKFGVTALQQAPAVDVVAVGLTSGQVIIHNIKFDETLMKFRQDW-GPITSISFRTDGHP 243

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   244 IMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFD 303

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS I ++ ++ L    +
Sbjct:   304 GPTGEGRLLRFRMGHSAPLTKIRYYGQNGQQILSASQDGTLQSFSTIHEKFNKSLGHGLI 363

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E RE DW +++ CH        W  Q   +G +
Sbjct:   364 NKKKVKRKGLQNAMSVRLPPITKFAAEEARESDWDSIIACHQGKLSCSTWNYQRSTIGAY 423

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+ +     + AH
Sbjct:   424 FLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSFGE-----DQAH 478

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533
              G V GVA D  N L+I+AG  G +K W+FK + L     +  S   ++ HR +G+L   
Sbjct:   479 KGSVRGVAVDGLNQLIITAGSEGLLKFWNFKNKILIHSMSLSSSPNMMLLHRDSGILGLA 538

Query:   534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
              DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     ID
Sbjct:   539 LDDFSICVLDIETRKIVREFSGHQGQINDLAFSPDGRWLISASMDCSVRTWDLPSGCLID 598

Query:   594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMP 653
             +  VD +   +++SP  D LAT+HVD  G+YLW N  ++S         S + + +  +P
Sbjct:   599 SFLVDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPTDYVP 651

Query:   654 SVSSVEG-CQDENS--SQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLIN 710
              V  + G CQ+E+   S+  +  +D + +  +  P  +Q    LVTLSLLP+S+W++L+N
Sbjct:   652 LVVMLPGTCQNEDVEFSEETIEPSDEMIE--YDSP--EQLNEQLVTLSLLPESRWKNLLN 707

Query:   711 LDIIKARNXXXXXXXXXXXAPFFLPSVPSL 740
             LD+IK +N           APFF+P+VP L
Sbjct:   708 LDVIKKKNKPKEPPKVPKSAPFFIPTVPGL 737

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

RGD|1586463 Wdr36 "WD repeat domain 36" [Rattus norvegicus (taxid:10116)]

 Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
 Identities = 282/768 (36%), Positives = 429/768 (55%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ +P  V+   L    +VT  VGK+FH Y+  KL+LV V   +P+ I 
Sbjct:    15 LFAGFRALGLFSNDIPHVVRYNALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDIC 74

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  ++  T+  H A+++LL  FG+H++S+D D  + IW 
Sbjct:    75 CMAADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWH 134

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNKV++GS++GSLQLWNI + K LY F 
Sbjct:   135 IYSEEEYL----QLTFDKSVFKISTILHPSTYLNKVLLGSEQGSLQLWNIKSNKLLYTFP 190

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVA+G   G++ +HN+++DE L+ F H   G +T+++F +DG P
Sbjct:   191 GWKVGVTALQQAPAVDVVAIGLVSGQVVIHNIKFDETLMKF-HQDWGPITSISFRTDGHP 249

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   250 IMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAISGLTFLHREPLLVTNGADNALRIWIFD 309

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLR R GHSA    IR+Y  NG+ ILSA QD   + FS + ++ ++ L    V
Sbjct:   310 GPTGEGRLLRLRMGHSASLTKIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGLV 369

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E R+ DW  V+ CH        W  Q   +G +
Sbjct:   370 NKKIVKRKGLQNTMSVRLPPITQFAAEEARQSDWDGVIACHQGKLSCSTWNYQRSTIGAY 429

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P     N     A  I++CGNFA++G + G ++ +N+QSGI RGS+ D  E+   AH
Sbjct:   430 FLKPKNVKANSATATAVDITSCGNFAIIGLSSGAVDVYNMQSGIHRGSFGD--EK---AH 484

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533
              G V GVA D  N L I+AG    +K W+FK + L     +      ++ HR +G+L   
Sbjct:   485 AGSVRGVAVDGLNQLAITAGSERLLKFWNFKSKVLVHSLSLDSPPNVMLLHRDSGILGLA 544

Query:   534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
              DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     ID
Sbjct:   545 LDDFSITVLDIETRKIVREFSGHQGQINDMTFSPDGRWLISAAMDCSVRTWDLPSGCLID 604

Query:   594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMP 653
                +D +   +++SP  D LAT+HVD  G+YLW N  ++S         S + +    +P
Sbjct:   605 CFLLDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPPDYVP 657

Query:   654 SVSSVEG-CQDEN--SSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLIN 710
             SV  + G CQ +   + +  +  +D + +  +  P  +Q    LVTLSLLP+S+W++L+N
Sbjct:   658 SVLMLPGTCQTQGLEALEEQIEPSDEMIE--YESP--EQLNEQLVTLSLLPESRWKNLLN 713

Query:   711 LDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTES 758
             LD+IK +N           APFF+P+VP L     F   E T +  +S
Sbjct:   714 LDVIKKKNKPKEPPKVPQSAPFFIPTVPGLVPR--FAVPEPTSDPQQS 759

GO:0001895 "retina homeostasis" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0030516 "regulation of axon extension" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

ZFIN|ZDB-GENE-030131-464 wdr36 "WD repeat domain 36" [Danio rerio (taxid:7955)]

 Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
 Identities = 278/761 (36%), Positives = 420/761 (55%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             IF  ++A+G  ++ +   V+  +   E +V  +VG+ FH YN  KL +V V   LP+ I 
Sbjct:    21 IFSGFRALGLYSNHLAHVVRFHKKHREFYVVTAVGQCFHTYNVKKLGIVAVSNALPEDIS 80

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
             ++ +     +AAYG  I+   R+ +V  T++ H A V+LLL FG H++S+D D  + IW 
Sbjct:    81 SVTADCMLVYAAYGKLISAFARSREVVHTYTGHQADVHLLLPFGNHLISVDKDNVVIIWD 140

Query:   120 FKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG 179
              +  E+    + + K    F  + +MHP TYLNK++ GS +GSLQLWNI + K L+ F G
Sbjct:   141 VES-EDTYLQISYDKAS--FEVSALMHPSTYLNKILFGSSQGSLQLWNIKSNKLLFTFSG 197

Query:   180 WGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239
             W          PA+DVV VG + G+I +HN+++DE L+ F     G +TAL+F +DG P+
Sbjct:   198 WSAAVTVLQQTPAVDVVGVGLASGQIIIHNIKFDETLMKFQQDW-GPITALSFRTDGHPI 256

Query:   240 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299
             +ASG+  G I +W+LE+++L S +R+AH  AI  L F  NEP+L++  ADN+I++WIFD 
Sbjct:   257 MASGSPIGHIGLWDLEEKKLVSQMRDAHTTAIAGLTFLQNEPLLITNGADNAIRVWIFDV 316

Query:   300 TDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358
               GD RLLR R GHSAPP  IR Y  +G +ILSAGQD   + FS + ++ ++ L    + 
Sbjct:   317 AGGDGRLLRQRMGHSAPPTKIRHYDQSGLNILSAGQDGTLQSFSTVHERFNKSLGHGTLN 376

Query:   359 K-RARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417
             K +A+             +  F     R+ DW  ++ CH        W  Q   +G H L
Sbjct:   377 KAKAKKKGVKYDTAKLPSITTFASETARQSDWDGIIACHRGFLMTTSWNYQKGSMGAHKL 436

Query:   418 RPCPENPTA-----VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
              P   N          A  IS+CGNFAV+  + G I+ +N+QSG+ RG Y +     + A
Sbjct:   437 EPERFNRNRSLNVHATAVDISSCGNFAVIALSSGHIDVYNMQSGLHRGHYGE-----DKA 491

Query:   473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
             H G V GVA D+ N L  S G    +K+W FK ++      +  +    + HR +G+LA 
Sbjct:   492 HEGPVRGVAVDALNQLTFSVGADHLLKIWKFKSKEHLHTHRLPAAPASSLLHRDSGMLAI 551

Query:   533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
               D   I + DV   R+VRKF GH  +I D  FS DG+WL+++ MD ++R WD+     +
Sbjct:   552 ALDVFAIHILDVETRRIVRKFSGHRGQINDMTFSPDGRWLITASMDCTIRTWDLPSGSLV 611

Query:   593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
             D   V+ +  ++SLSP  + LA++HVD  GVYLW N  + S  S +    +  E   + +
Sbjct:   612 DCFLVEAAAVSVSLSPTGNFLASSHVDGLGVYLWSNNTLCSLVS-LRPLPADYEPTVIML 670

Query:   653 PSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLD 712
             P +     C  +++ + +V  +D      +  P   Q    LVTLSLLP S+W++L++LD
Sbjct:   671 PGI-----CPSKDTEEEEVLDSDSSEMAEYISPA--QLDEHLVTLSLLPDSRWKNLLHLD 723

Query:   713 IIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFK--PSES 751
             IIK +N           APFF+P++P L  +      PSE+
Sbjct:   724 IIKKKNKPKEPPKVPKAAPFFIPTIPGLVPQFSLPNTPSEA 764

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

POMBASE|SPCC1672.07 SPCC1672.07 "U3 snoRNP-associated protein Utp21 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 270/748 (36%), Positives = 419/748 (56%)

Query:     3 IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRAL 62
             I+ P+++IG+++++VPF ++  GT   VT SVG  F  Y+C KLNL+ VG QL K+I  L
Sbjct:    23 IYAPFRSIGHVSNAVPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCL 82

Query:    63 ASYRDYTFAAYGNHIAVVKRAHQVATWS----RHSAKVNLLLLFGEHILSIDIDGNMFIW 118
              S++D+   A G+ I   KR   +  W     +    V  L  FGE I++     ++++W
Sbjct:    83 KSFKDFMLVAAGSKIFAYKRGKII--WDIDVEQEHGTVTHLDAFGEWIIACTSSRHVYVW 140

Query:   119 AFKGIEENLAPVGHVKL--DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
               K   +   P  H     +     T ++HP TYLNK+++G  +G+LQ+WN+   K+++E
Sbjct:   141 --KHASKYSVPELHTTFLPNTNADITSLLHPSTYLNKILLGFSDGALQIWNLRVSKRVHE 198

Query:   177 FKGW-GXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD 235
             F+ + G         P LDV+AVG   G+I + N++    L+ F     G V + +F +D
Sbjct:   199 FQEFFGDGITSLTQAPVLDVLAVGTISGRIVIFNLKNGSILMEFKQD--GQVLSCSFRTD 256

Query:   236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
             G P+LAS    G +S W+L KRR+Q+V   AH  ++  + F   +P+L++A  DNS+K W
Sbjct:   257 GTPILASSNPIGDLSFWDLSKRRIQNVTYNAHFGSLPKIQFLNGQPILVTAGPDNSLKEW 316

Query:   296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQ 354
             IFD+ DG PR+LR R+GH  PP  ++FY    H L SA  DR+ R  S+ QD QS ELSQ
Sbjct:   317 IFDSMDGAPRILRSRNGHYEPPSFVKFYGKSVHFLISAATDRSLRAVSLYQDSQSTELSQ 376

Query:   355 RHVAKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
               V  +A+             + A   +  RE+ W NV+T H + + A  W  ++  LG+
Sbjct:   377 GSVISKAKKLNVRPEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQ 436

Query:   415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474
             H+L P  +  T+V++  +S CGNF ++G++ G ++ +N+QSGI R S+   S  S     
Sbjct:   437 HVL-PTSDG-TSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSF-GQSSLSGKP-- 491

Query:   475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA 534
               V  V  D+ N ++++A   G +K WDF   +L    +VG S+   +Y   + L+A   
Sbjct:   492 --VTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAIYQHSSDLVAVAC 549

Query:   535 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA 594
             DD  IR+ DV   ++VR+  GH++R+T F FS+ G+WL+++ +DG++R WD+     ID+
Sbjct:   550 DDFGIRIVDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGHLIDS 609

Query:   595 IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASG-KEIVSVKMP 653
             I      T+L+ +P  D LAT HVDQ G+ LW N  MF    ++ + A    ++V V  P
Sbjct:   610 ISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFK---HVSTKALRLDDVVEVSAP 666

Query:   654 SVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDI 713
             SVS  +G     ++  +V  ++   ++     T  Q  P+L TLS LP++QWQ+LINL+ 
Sbjct:   667 SVSGEKGISVVEAAL-NVE-SNAEDEEDISYRTMDQLDPNLQTLSKLPRTQWQTLINLEA 724

Query:   714 IKARNXXXXXXXXXXXAPFFLPSVPSLS 741
             IKARN           APFFLPS+   S
Sbjct:   725 IKARNAPKEVPKVPEKAPFFLPSLKDQS 752

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=NAS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0005819 "spindle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

GO:0032153 "cell division site" evidence=IDA

GO:0044732 "mitotic spindle pole body" evidence=IDA

FB|FBgn0038146 CG9799 [Drosophila melanogaster (taxid:7227)]

 Score = 1059 (377.8 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
 Identities = 259/779 (33%), Positives = 408/779 (52%)

Query:     3 IFEPYKAIGYITSSVPFS---VQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKI 59
             IF   +A+GY+++ VP     VQR      +T  +G++F +Y      L+ V    P +I
Sbjct:    25 IFRRNRALGYVSNQVPAVTRYVQRRRDTLLITC-IGRSFQVYTANHFRLLHVSGLHPDEI 83

Query:    60 RALASYRDYTFAAYGNHIAVVKRA--HQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFI 117
              ALA+ R +T+ A  N      RA  H    +  H   V+LLL FG  +++ID    + +
Sbjct:    84 TALATDRLHTYTA-SNKCIYAWRAGKHIRHVYRGHQKDVHLLLPFGSSLIAIDRQNVLKV 142

Query:   118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177
             W     E+    V      ++F  T + HP TY+NK+++GSQ+G L++ NI     +   
Sbjct:   143 WNIS-TEDVYLEVPF--RSEEFQITAVTHPPTYINKIVLGSQQGQLKILNIKKNSVVCTL 199

Query:   178 KGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237
                          PALDVVAVG  DG I + N+++DE L++F     G VT L+F +DG 
Sbjct:   200 SHHDSRITCIEPSPALDVVAVGHGDGTIILLNLKFDEVLMSFQQDW-GQVTNLSFRTDGP 258

Query:   238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
             P+L S  S+G ++ WNLE+R+L   + +AH+ ++ +     +EPV+ + S DNS++M++F
Sbjct:   259 PILVSACSNGYMAFWNLEERKLAGQL-QAHEESVTTAICLPSEPVVFTTSPDNSMRMFVF 317

Query:   298 DTTDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
             D  DG  R LR R GH+ PP CIR++ ++G  ILS+G+D   R+FS I +  ++ + +  
Sbjct:   318 DMPDGGARQLRIREGHTKPPFCIRYHGSSGVSILSSGEDSTMRVFSTISESLNKSMGRAT 377

Query:   357 VAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
                +A  +            P++ F     RE++W N+   H    QA  W      +GE
Sbjct:   378 YNPKATKKKNRFEHDKFGMPPILEFTSDTAREKEWDNIAAIHAGVIQATTWSFGKNRMGE 437

Query:   415 HILRPCP---ENPTAVK---ACTI-SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE 467
             H L P      N T  +    C + + CGNF ++G + G IERFN+QSG+ R +Y     
Sbjct:   438 HRLVPKQFQNSNRTNFQNETTCIVLTHCGNFVIIGYSSGDIERFNIQSGLHRATY----- 492

Query:   468 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS----RWEVGCSLVKIVY 523
               + AH   V G+A D+ N  +IS    G +K W FKG+  K     R   G +L+++  
Sbjct:   493 -GSPAHKMAVRGLASDNLNQTVISGCSEGLLKFWSFKGKVDKPLATLRLADGIALIRL-- 549

Query:   524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583
             HR + +LA   +   I + D+    +VRKF GHT ++ D  FS D +WL+++ MD ++++
Sbjct:   550 HRESSMLAIGLETFKIFVVDMHTRVIVRKFVGHTAKLNDLTFSPDSRWLITAAMDSTIKV 609

Query:   584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS--NIDSY 641
             WD+  +  +D   V+    +LS+SPN D LATAHV   G+YLW N+ +F+  S  +ID  
Sbjct:   610 WDIPSSYMVDHFRVEAPCVSLSMSPNGDFLATAHVGLLGIYLWANKTLFNQISLRSIDPL 669

Query:   642 ASGKEI-VSVKMPSVSSVE-GCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSL 699
                  + +   +     +E G ++    + D  +   +    +  PT  Q   +L+TLS 
Sbjct:   670 ELAPYVGLPTNVCDAMELEDGMKELEIDEEDESKLGELVDTKYETPT--QLSEELITLSG 727

Query:   700 LPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTES 758
             L  S+WQ+L++L++IK RN           APFFLP+V  L  E+ F      KE+ ES
Sbjct:   728 LAASRWQNLLDLELIKQRNKPKAPPKAPKQAPFFLPTVSGL--ELRFDVENGQKEEDES 784

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021349001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•	•	0.918
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)				•	•		•	•	0.904
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.893
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•	•		•		0.892
	GSVIVG00000661001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa)				•	•		•		0.877
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•	•		•	•	0.873
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)				•	•		•		0.853
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.841
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•		•		0.836
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)				•	•		•	•	0.831

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	809
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-29
pfam04192	233	pfam04192, Utp21, Utp21 specific WD40 associated p	1e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-15
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-09
smart00320	40	smart00320, WD40, WD40 repeats	8e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004
smart00320	40	smart00320, WD40, WD40 repeats	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  118 bits (298), Expect = 2e-29
 Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 39/320 (12%)

Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326
           H   +  + F  +  +L + S D +IK+W  D   G+  LLR   GH+ P   +   A+G
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVW--DLETGE--LLRTLKGHTGPVRDVAASADG 63

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
            ++ S   D+  RL+ +   +  R L+  H                   V     A   +
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTG-H----------------TSYV--SSVAFSPD 104

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
                + +   D     VW ++        L     +   V +   S  G F    +  G
Sbjct: 105 GRI--LSSSSRDK-TIKVWDVETGKC----LTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506
            I+ ++L++G    +           H GEV  VA       ++S+   G IK+WD    
Sbjct: 158 TIKLWDLRTGKCVATL--------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209

Query: 507 D-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF 565
             L +       +  + +     LLA+ ++D  IR++D+     V+   GHT+ +T   +
Sbjct: 210 KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269

Query: 566 SEDGKWLLSSGMDGSLRIWD 585
           S DGK L S   DG++RIWD
Sbjct: 270 SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  117 bits (295), Expect = 5e-29
 Identities = 63/272 (23%), Positives = 116/272 (42%), Gaps = 19/272 (6%)

Query: 86  VATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC 143
             T   H+  V  +     G+ + +   DG + +W  +  E      GH           
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-----TGPVRD 56

Query: 144 IM-HPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD 202
           +    D     +  GS + +++LW++ T + +    G  S +SS   SP   +++    D
Sbjct: 57  VAASADG--TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114

Query: 203 GKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
             I V +V   + L T   H+    V ++AFS DG   +AS +  G I +W+L   +  +
Sbjct: 115 KTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVA 171

Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321
            +   H   + S+ F  +   L+S+S+D +IK+W  D + G  + L    GH      + 
Sbjct: 172 TL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--DLSTG--KCLGTLRGHENGVNSVA 226

Query: 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELS 353
           F  +G  + S  +D   R++ +   +  + LS
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|217955 pfam04192, Utp21, Utp21 specific WD40 associated putative domain

 Score =  108 bits (273), Expect = 1e-26
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 690 QI-PDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKP 748
           Q+  +LVTLSLLP+S+WQ+L++LD+IK RNKP E PKKPEKAPFFLP+V  L        
Sbjct: 24  QLSEELVTLSLLPRSRWQTLLHLDVIKQRNKPKEAPKKPEKAPFFLPTVAGLDDRFGSAA 83

Query: 749 SESTKEDTES 758
               K DT+S
Sbjct: 84  ESEDKGDTDS 93

Utp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Length = 233

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  114 bits (284), Expect = 1e-26
 Identities = 94/411 (22%), Positives = 172/411 (41%), Gaps = 41/411 (9%)

Query: 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TFTHSMRGAVTALAFSSDGQPLL 240
            SI+S   SP  +++  G SDG I + ++   E+L+ +       +V+ LA SS     +
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 241 ASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIF 297
              +SS  G + +W+L          E H  ++ SL F  +  +L S S  D +IK+W  
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRH 356
            T     + L   +GH+ P   + F  +G   I S   D   RL+ +   +  R     H
Sbjct: 186 RTG----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
                              V +F        D   + +   D     +W L++      +
Sbjct: 242 SDS---------------VVSSFS------PDGSLLASGSSDGT-IRLWDLRS---SSSL 276

Query: 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
           LR    + ++V +   S  G     G++ G +  ++L++G         S  +   H G 
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL------SSLTLKGHEGP 330

Query: 477 VVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD 535
           V  ++     + L+      G I++WD +        E   +++ + +     ++++ + 
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390

Query: 536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           D  +RL+D+    ++R  +GHT R+T   FS DGK L S   D ++R+WD+
Sbjct: 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (252), Expect = 2e-23
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 9/190 (4%)

Query: 106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165
           + S   D  + +W  +  +      GH      +  +    PD     V   SQ+G+++L
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGH----TDWVNSVAFSPDGTF--VASSSQDGTIKL 161

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
           W++ T K +    G    ++S   SP  + +    SDG I + ++   + L T       
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHEN 220

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285
            V ++AFS DG  LLASG+  G I +W+L        +   H N++ SL +  +   L S
Sbjct: 221 GVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLAS 278

Query: 286 ASADNSIKMW 295
            SAD +I++W
Sbjct: 279 GSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 99.3 bits (248), Expect = 7e-23
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLA 531
           H G V  VA      L+ +    G IKVWD +  +L    +     +  +        LA
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
           + + D  IRL+D+     VR   GHT  ++   FS DG+ L SS  D ++++WDV   + 
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127

Query: 592 IDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
           +  +  H D  + +++ SP+   +A++  D   + LW
Sbjct: 128 LTTLRGHTD-WVNSVAFSPDGTFVASSSQDGT-IKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 23/232 (9%)

Query: 401 QAYVWRLQN----FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456
              VW L+       L  H           V+    SA G +   G++   I  ++L++G
Sbjct: 32  TIKVWDLETGELLRTLKGHTG--------PVRDVAASADGTYLASGSSDKTIRLWDLETG 83

Query: 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VG 515
               +           H   V  VA      ++ S+     IKVWD +     +      
Sbjct: 84  ECVRTLT--------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135

Query: 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575
             +  + +      +A+ + D  I+L+D+   + V    GHT  +    FS DG+ LLSS
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 576 GMDGSLRIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLW 626
             DG++++WD+   + +  +   +  + +++ SP+  +LA+   D   + +W
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.4 bits (246), Expect = 8e-22
 Identities = 100/460 (21%), Positives = 177/460 (38%), Gaps = 42/460 (9%)

Query: 57  KKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGN 114
             +   +S       A  +   V            H   +  +     GE +LS   DG 
Sbjct: 29  SLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGT 88

Query: 115 MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KK 173
           + +W     E+ +  +  +  D   +   +  PD     +   S +G+++LW++ST  K 
Sbjct: 89  IKLWDLDNGEKLIKSLEGLH-DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147

Query: 174 LYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALAF 232
           +   +G   S++S   SP   ++A G S DG I + ++R  + L T        V++LAF
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAF 206

Query: 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292
           S DG  L+ASG+S G I +W+L   +L       H ++++S  F  +  +L S S+D +I
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265

Query: 293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 352
           ++W          LLR  SGHS+  L + F  +G+ + S   D   RL+ +         
Sbjct: 266 RLW---DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG------ 316

Query: 353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412
                    + L     +    PV +   +     D   +V+   D     +W L+    
Sbjct: 317 ---------KLLSSLTLKGHEGPVSSLSFSP----DGSLLVSGGSDDGTIRLWDLR---- 359

Query: 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
                    E  + V + + S  G     G+  G +  ++L +G           R+   
Sbjct: 360 -TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL--------RNLDG 410

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 512
           H   V  +        + S      I++WD K       +
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 84.7 bits (210), Expect = 6e-18
 Identities = 61/332 (18%), Positives = 116/332 (34%), Gaps = 67/332 (20%)

Query: 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371
           GH+    C+ F  +G+ + +   D   +++ +   +  R L              K    
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL--------------KGHTG 52

Query: 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN----FVLGEHILRPCPENPTAV 427
            ++ V A             + +   D     +W L+       L  H         + V
Sbjct: 53  PVRDVAASADGT-------YLASGSSDK-TIRLWDLETGECVRTLTGH--------TSYV 96

Query: 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487
            +   S  G      +    I+ +++++G    +           H   V  VA     T
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--------HTDWVNSVAFSPDGT 148

Query: 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-----------IVYHRVNGLLATVADD 536
            + S+   G IK+WD +              V            + +      L + + D
Sbjct: 149 FVASSSQDGTIKLWDLRT----------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198

Query: 537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI- 595
             I+L+D+   + +    GH + +    FS DG  L S   DG++R+WD+     +  + 
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 596 -HVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
            H   S+T+L+ SP+   LA+   D   + +W
Sbjct: 259 GH-TNSVTSLAWSPDGKRLASGSAD-GTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 88/426 (20%), Positives = 167/426 (39%), Gaps = 45/426 (10%)

Query: 208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH 267
            N     +      S+         SS+   LL +  S  ++S+ +L    L+      H
Sbjct: 10  ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG-----H 64

Query: 268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF-YANG 326
           +++I S+ F  +  +L+S S+D +IK+W  D  +G+  +      H +    +     +G
Sbjct: 65  EDSITSIAFSPDGELLLSGSSDGTIKLW--DLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
             IL A             D   +        K  R L+   E +     +AF       
Sbjct: 123 NSILLASSSL---------DGTVKLWDLSTPGKLIRTLEGHSESVTS---LAFSPDGK-- 168

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAG 445
                + +         +W L+    G+ +          V +   S  G   +   ++ 
Sbjct: 169 ----LLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDP-VSSLAFSPDGGLLIASGSSD 220

Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK- 504
           G I  ++L +G    S L         H+  VV  +     +L+ S    G I++WD + 
Sbjct: 221 GTIRLWDLSTGKLLRSTLS-------GHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRS 272

Query: 505 -GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV--VALRMVRKFEGHTDRIT 561
               L++      S++ + +     LLA+ + D  +RL+D+    L      +GH   ++
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332

Query: 562 DFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620
              FS DG  L+S G  DG++R+WD+   + +  +    ++ ++S SP+  V+++   D 
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTD- 391

Query: 621 NGVYLW 626
             V LW
Sbjct: 392 GTVRLW 397

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
           +R  +GHT  +T   FS DG  L S   DG++R+WD
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
           ++  +GHT  +T   FS DGK+L S   DG++++WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLS 607
           + R  +GHT  +T   FS DGK L +   DG++++WD+     +  +      +  ++ S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 608 PNMDVLATAHVDQNGVYLW 626
            +   LA+   D   + LW
Sbjct: 61  ADGTYLASGSSD-KTIRLW 78

Length = 289

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.9 bits (103), Expect = 3e-04
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 13/154 (8%)

Query: 148 DTYLNKVIVGSQ-EGSLQLWNIS-----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCS 201
           ++Y+   +  S  EG +Q+W+++     T+ K +E + W    SS  + P L  +A G  
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS--ADPTL--LASGSD 596

Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
           DG + + ++     + T     +  +  + F S+    LA G++   +  ++L   +L  
Sbjct: 597 DGSVKLWSINQGVSIGTI--KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654

Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
                H +  +S   F +   L+S+S DN++K+W
Sbjct: 655 CTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLW 687

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMW 295
           + H   + S+ F  +  +L S S D ++++W
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMW 295
           + H   + S+ F  +   L S S D +IK+W
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	809
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG1963	792	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG1188	376	consensus WD40 repeat protein [General function pr	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.74
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.72
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.72
KOG4227	609	consensus WD40 repeat protein [General function pr	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.7
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
KOG2315	566	consensus Predicted translation initiation factor	99.64
KOG2315	566	consensus Predicted translation initiation factor	99.63
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.63
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.61
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.6
COG4946	668	Uncharacterized protein related to the periplasmic	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.57
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.56
PRK04922	433	tolB translocation protein TolB; Provisional	99.56
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.55
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.5
PRK05137	435	tolB translocation protein TolB; Provisional	99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.5
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
KOG2314	698	consensus Translation initiation factor 3, subunit	99.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.45
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.43
KOG2314	698	consensus Translation initiation factor 3, subunit	99.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.41
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.35
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
KOG4547	541	consensus WD40 repeat-containing protein [General	99.32
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
COG4946	668	Uncharacterized protein related to the periplasmic	99.28
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.26
PRK01029	428	tolB translocation protein TolB; Provisional	99.25
PRK04792	448	tolB translocation protein TolB; Provisional	99.25
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.18
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.14
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.13
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.12
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.12
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	99.1
PRK04043	419	tolB translocation protein TolB; Provisional	99.06
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.05
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.99
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.96
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.95
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.94
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.9
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.89
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.89
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.87
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.84
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.83
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.82
PRK02888	635	nitrous-oxide reductase; Validated	98.82
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.81
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.78
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.77
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.76
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.72
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.69
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.68
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.67
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.66
KOG2695	425	consensus WD40 repeat protein [General function pr	98.66
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.64
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.61
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.6
PRK02888	635	nitrous-oxide reductase; Validated	98.6
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.51
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.5
KOG2695	425	consensus WD40 repeat protein [General function pr	98.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.49
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.46
KOG3621	726	consensus WD40 repeat-containing protein [General	98.46
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.45
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.43
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.43
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.43
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.4
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.37
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.33
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.31
KOG3621	726	consensus WD40 repeat-containing protein [General	98.27
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.25
COG3391	381	Uncharacterized conserved protein [Function unknow	98.21
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.19
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.18
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.16
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.16
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.15
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.09
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.07
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.06
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.05
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.03
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.01
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.99
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.98
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.97
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.94
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.91
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
COG3391	381	Uncharacterized conserved protein [Function unknow	97.87
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.8
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.79
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.79
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.59
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.59
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.59
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.58
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.56
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.54
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	97.45
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.41
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.41
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.4
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.4
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.39
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.38
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.35
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.35
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.35
PRK13616	591	lipoprotein LpqB; Provisional	97.27
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.25
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.22
PRK13616	591	lipoprotein LpqB; Provisional	97.2
KOG2395	644	consensus Protein involved in vacuole import and d	97.13
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.02
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.0
KOG2444	238	consensus WD40 repeat protein [General function pr	96.93
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.89
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.85
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.84
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.83
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.78
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.74
COG5276	370	Uncharacterized conserved protein [Function unknow	96.72
KOG2444	238	consensus WD40 repeat protein [General function pr	96.71
KOG2395	644	consensus Protein involved in vacuole import and d	96.67
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.64
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.53
COG5276	370	Uncharacterized conserved protein [Function unknow	96.5
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.45
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.44
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.37
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.27
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.24
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.22
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.2
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.11
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.08
PHA02713	557	hypothetical protein; Provisional	96.07
PHA02713	557	hypothetical protein; Provisional	96.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.0
PRK13684	334	Ycf48-like protein; Provisional	95.99
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.89
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.88
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.58
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.57
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.43
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.35
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.26
PRK13684	334	Ycf48-like protein; Provisional	95.23
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.14
PRK10115	686	protease 2; Provisional	95.11
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.0
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.83
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.83
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.8
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.8
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.62
PHA03098	534	kelch-like protein; Provisional	94.53
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.41
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.38
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.35
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.12
PRK10115	686	protease 2; Provisional	93.99
PHA03098	534	kelch-like protein; Provisional	93.94
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.77
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.76
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.72
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.69
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.39
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.36
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.3
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.91
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.81
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.75
COG5167	776	VID27 Protein involved in vacuole import and degra	92.66
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.65
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.42
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.17
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	91.89
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.73
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	91.64
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.35
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.18
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	91.15
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.14
COG5167	776	VID27 Protein involved in vacuole import and degra	91.1
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.07
KOG2247	615	consensus WD40 repeat-containing protein [General	90.91
COG4590	733	ABC-type uncharacterized transport system, permeas	90.9
KOG2247	615	consensus WD40 repeat-containing protein [General	90.87
PHA02790	480	Kelch-like protein; Provisional	90.73
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.51
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.41
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.29
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.21
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.86
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.59
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	89.45
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.42
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.34
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.74
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.7
PHA02790	480	Kelch-like protein; Provisional	88.46
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.41
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.78
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	87.68
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.61
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.23
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.22
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.61
COG4590	733	ABC-type uncharacterized transport system, permeas	86.44
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	86.01
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.78
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.33
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	84.87
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.73
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	84.68
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	84.24
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	84.03
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	83.05
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	82.81
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	82.47
PLN02153	341	epithiospecifier protein	82.24
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	82.05
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	81.91
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	81.26
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	81.22

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-140  Score=1090.04  Aligned_cols=785  Identities=45%  Similarity=0.764  Sum_probs=724.1

Q ss_pred             CcccccceeeeEecCCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCeEEEE
Q 003579            1 MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVV   80 (809)
Q Consensus         1 ~~~~~p~r~~g~vs~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~i~vw   80 (809)
                      |.||+|||+||+|+++|||.+..+++++++++|+|+++++||+++++++++++.++..|+|+|.+.+++|+|+|+.|++|
T Consensus        21 S~iFapfR~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~  100 (910)
T KOG1539|consen   21 SDIFAPFRALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAY  100 (910)
T ss_pred             cccccchhhhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecCcEEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCeeEEE-EccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCC-ccccceeeeEEcCCccccEEEEeCCCCCCEEEEEe
Q 003579           81 KRAHQVAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGI-EENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS  158 (809)
Q Consensus        81 ~~~~~~~~-~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~  158 (809)
                      .+++.+.. +.+|.+.|.-+.++|++|+++..++.+.||+..+. +.......-.+....+ ++.++||++|+|+|++|+
T Consensus       101 ~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~-Ital~HP~TYLNKIvvGs  179 (910)
T KOG1539|consen  101 ARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF-ITALLHPSTYLNKIVVGS  179 (910)
T ss_pred             EccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCc-eeeEecchhheeeEEEee
Confidence            99977666 89999999999999999999999999999999985 2211112233334444 788999999999999999


Q ss_pred             CCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (809)
Q Consensus       159 ~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~  238 (809)
                      .+|.+++||+++++.+++|+++...|+++..+|.-+++|+|..+|+|.++|++.++.+++|++. .++|++++|+.||++
T Consensus       180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~VtslSFrtDG~p  258 (910)
T KOG1539|consen  180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTSLSFRTDGNP  258 (910)
T ss_pred             cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeEEEeccCCCe
Confidence            9999999999999999999999999999999999999999999999999999999999999987 799999999999999


Q ss_pred             EEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCe
Q 003579          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (809)
Q Consensus       239 ~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (809)
                      +||+|+..|.+.+||++..+++..++.+|.+.|....|.|..+.+++++.|+++++|-+|++++.+++++.+.||..|+.
T Consensus       259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~  338 (910)
T KOG1539|consen  259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS  338 (910)
T ss_pred             eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccch-hhhhccCceeEEeeccccccccceeEEee
Q 003579          319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK-EEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (809)
Q Consensus       319 ~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (809)
                      |++|+. +|.++++++.|++++.+++....+.+++.+.+..+++++.+.. ....+++||..+++...|+.+|++++++|
T Consensus       339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h  418 (910)
T KOG1539|consen  339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH  418 (910)
T ss_pred             heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence            999995 8999999999999999999999999999997777777888777 88999999999999999999999999999


Q ss_pred             cCCceEEEEEeeeeeecceeeecCCCC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcc
Q 003579          397 MDTAQAYVWRLQNFVLGEHILRPCPEN--PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  474 (809)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (809)
                      .++..+++|++++...|++.+.+....  ...++++++++||||.++|++.|.|.+||+|+|.++..|..     .+.|.
T Consensus       419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----~~ah~  493 (910)
T KOG1539|consen  419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----SPAHK  493 (910)
T ss_pred             cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-----Ccccc
Confidence            999999999999999999999987544  36789999999999999999999999999999999999952     24899


Q ss_pred             ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 003579          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (809)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~  554 (809)
                      ++|++++.+..++.+++++.+|.+++||+++..++..+.....+.++.++....++|++++|..|+++|..+.+.++.|.
T Consensus       494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~  573 (910)
T KOG1539|consen  494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW  573 (910)
T ss_pred             CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecCcccCC
Q 003579          555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG  634 (809)
Q Consensus       555 ~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~  634 (809)
                      ||.++|++++|||||+||+++++|++||+||++++.+++.+..+.+++++.|||+|+||||+|.|+++|++|.|+++|..
T Consensus       574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~  653 (910)
T KOG1539|consen  574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKS  653 (910)
T ss_pred             ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCcceeecCCCccCcCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeccCCchhhHhhccchHhh
Q 003579          635 DSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDII  714 (809)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i  714 (809)
                      ++++ .++.++.+..+.+|+++++.+++++.     +. -+.+ +++..|.+++|++++|+|||.||+||||+|+|||+|
T Consensus       654 vs~r-~~~~~~~~~~v~lPst~~~~d~e~~~-----~t-LE~~-~e~i~y~~~eQldeeLvTlS~lp~Srwq~Ll~LelI  725 (910)
T KOG1539|consen  654 VSTR-AIPADYVPSWVMLPSTCDEDDDEDDE-----VT-LESN-DEDIKYSSPEQLDEELVTLSKLPRSRWQNLLNLELI  725 (910)
T ss_pred             cccc-ccCcccccceeecCcccccccchhhh-----hh-hhcc-ccccccCChhHhChhhhhhccCcHHHhhhcccHHHH
Confidence            9998 99999999999999987665443221     11 1111 223589999999999999999999999999999999


Q ss_pred             hhhCCCCCCCCCCCCCCcccccCC--CCCcc-cccCCCCCcccc------ccccccchhHHHHhcCCccCcccchhhHHH
Q 003579          715 KARNKPIEPPKKPEKAPFFLPSVP--SLSGE-ILFKPSESTKED------TESLKFQHLLIILKVCPHLLWIWNFECFRS  785 (809)
Q Consensus       715 ~~r~kp~~~~~~~~~~pffl~~~~--~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (809)
                      |+||||+||||+||+||||||+++  |++++ ...++..+++.+      +.++++|.|+++|+++.++.||  .++|++
T Consensus       726 k~RnkPke~PK~pkkaPFFLp~~~s~g~v~e~~~~~~~~~~~~~~~ik~~~~L~~es~F~~~Lre~~~s~~~--~~~~~~  803 (910)
T KOG1539|consen  726 KKRNKPKEPPKKPKKAPFFLPKVPSEGLVLETPAAEELNKEEDENKIKKLGLLELESSFTTLLREGKDSKDF--LDAFAL  803 (910)
T ss_pred             HhcCCCCCCCCccccCCcccccCCcccccccCcchhhhcchhhhhhhhccccccccchHHHHHhhccccccH--HHHHHH
Confidence            999999999999999999999999  44444 333333333222      4446899999999999999999  999999


Q ss_pred             HHhhhhhhhcccceEEEee
Q 003579          786 LIMMITKNLIKDLSIYRLN  804 (809)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~  804 (809)
                      |++|+|.++  |+|||+||
T Consensus       804 L~~~~psai--D~eiRsL~  820 (910)
T KOG1539|consen  804 LKNLSPSAI--DFEIRSLN  820 (910)
T ss_pred             HHhcCcchh--eeehhhhh
Confidence            999999999  99999994

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-54  Score=445.86  Aligned_cols=568  Identities=19%  Similarity=0.291  Sum_probs=472.6

Q ss_pred             cCCeEEEEEEcCCeEEEEEcCccEE-EEec-CCCCCCcEEEEEeCCeEEEEECC--e-EEEEE--CCeeEEEEcc-cccc
Q 003579           24 LGTENFVTVSVGKAFHIYNCAKLNL-VLVG-PQLPKKIRALASYRDYTFAAYGN--H-IAVVK--RAHQVATWSR-HSAK   95 (809)
Q Consensus        24 ~~~~~~i~~~~~~~i~iwd~~~~~~-~~~~-~~~~~~I~~la~~~~~~~~a~g~--~-i~vw~--~~~~~~~~~~-h~~~   95 (809)
                      ++++++++.+ +..|.+-|+.+++. +... +..+..|+++++.||..++.+..  . +++|+  +++.++.++. |++|
T Consensus        29 ~nG~~L~t~~-~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P  107 (775)
T KOG0319|consen   29 SNGQHLYTAC-GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP  107 (775)
T ss_pred             CCCCEEEEec-CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCC
Confidence            5566666555 45688889999877 3333 66788999999999966554432  2 88886  4666777777 9999


Q ss_pred             EEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce
Q 003579           96 VNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK  173 (809)
Q Consensus        96 V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~  173 (809)
                      |..++++  |..|++|+.||.++|||+..+.+    ...++.+++.+....|+|......|++|..|+.+++||+.+...
T Consensus       108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~----th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t  183 (775)
T KOG0319|consen  108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYC----THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT  183 (775)
T ss_pred             eEEEEEcCCCceEEeccccceEEEEEeeCCEE----EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence            9999985  77899999999999999999988    78899999999999999998667799999999999999986554


Q ss_pred             -EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-----CCCEEEEEcCCC
Q 003579          174 -LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-----GQPLLASGASSG  247 (809)
Q Consensus       174 -~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-----g~~~lasg~~dg  247 (809)
                       ++.+..|.+.|++++|++|+..+++++.|..+.|||+...+...++..  ...+.++.+-++     |. ++.+++.+|
T Consensus       184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~--ye~~E~vv~l~~~~~~~~~-~~~TaG~~g  260 (775)
T KOG0319|consen  184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL--YESLESVVRLREELGGKGE-YIITAGGSG  260 (775)
T ss_pred             HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech--hhheeeEEEechhcCCcce-EEEEecCCc
Confidence             888999999999999999999999999999999999987777777765  356788888877     55 888999999


Q ss_pred             cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CC
Q 003579          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NG  326 (809)
Q Consensus       248 ~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~  326 (809)
                      .+++||.++++++...+......+..+...+....++....|..+.++|.+..    ++.+.+-|..+.|..++|.. +.
T Consensus       261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l----~i~k~ivG~ndEI~Dm~~lG~e~  336 (775)
T KOG0319|consen  261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL----TIVKQIVGYNDEILDMKFLGPEE  336 (775)
T ss_pred             eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc----EEehhhcCCchhheeeeecCCcc
Confidence            99999999998877666333444777777777777778888999999987765    67788889999999999975 67


Q ss_pred             CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEE
Q 003579          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (809)
Q Consensus       327 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (809)
                      ++++.++..+.+|+|++.+..+.  +-.++..                .+.+++  ..   .-..++.....+..+++|.
T Consensus       337 ~~laVATNs~~lr~y~~~~~~c~--ii~GH~e----------------~vlSL~--~~---~~g~llat~sKD~svilWr  393 (775)
T KOG0319|consen  337 SHLAVATNSPELRLYTLPTSYCQ--IIPGHTE----------------AVLSLD--VW---SSGDLLATGSKDKSVILWR  393 (775)
T ss_pred             ceEEEEeCCCceEEEecCCCceE--EEeCchh----------------heeeee--ec---ccCcEEEEecCCceEEEEE
Confidence            89999999999999987665543  2222211                122222  00   1114677777889999999


Q ss_pred             eeeeeecceeeecCCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeee-CcccccccCccccEEEEEEcC
Q 003579          407 LQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYL-DMSERSNYAHNGEVVGVACDS  484 (809)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~  484 (809)
                      +++............+|...|.+++++..+ .++++++.|+++++|++...+...... .........|...|++++++|
T Consensus       394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~  473 (775)
T KOG0319|consen  394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP  473 (775)
T ss_pred             ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence            977666666677778999999999997765 789999999999999998733222211 001112358999999999999


Q ss_pred             CCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeE
Q 003579          485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (809)
Q Consensus       485 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l  563 (809)
                      +.++++||+.|.+.++|++....+..++..+ ..+.++.|+|..+.+|+++.|++|+||.+.+..++++|.||+..|..+
T Consensus       474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra  553 (775)
T KOG0319|consen  474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA  553 (775)
T ss_pred             CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence            9999999999999999999999999999877 899999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          564 CFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       564 ~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                      .|-.+|+.|+|++.||.|++|++.++.|+..+..|.. |++++-+|.+.+++||+.|+. |.+|.
T Consensus       554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~-i~~wk  617 (775)
T KOG0319|consen  554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR-IIFWK  617 (775)
T ss_pred             eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE-EEEee
Confidence            9999999999999999999999999999999987765 999999999999999999995 99997

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.1e-52  Score=424.70  Aligned_cols=525  Identities=16%  Similarity=0.287  Sum_probs=442.7

Q ss_pred             cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEE--CCeEEEEECCeeEE----------EEcc
Q 003579           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQVA----------TWSR   91 (809)
Q Consensus        24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~--g~~i~vw~~~~~~~----------~~~~   91 (809)
                      +++.+++++...|...+-+......++... ...+|.|+.||||++++|.  |+.+.||..++.+.          ++.|
T Consensus        65 p~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g  143 (893)
T KOG0291|consen   65 PDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLG  143 (893)
T ss_pred             CCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecC
Confidence            567788888888877777777766665553 5889999999999888765  56699998765422          3789


Q ss_pred             ccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Q 003579           92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS  169 (809)
Q Consensus        92 h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~  169 (809)
                      |...|+++.|  |.++|++++.|-++++|.++..+-.  ....+..|...+..|.|..+.  ..+++.+.||.+.+|...
T Consensus       144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~--~~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~  219 (893)
T KOG0291|consen  144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL--FTYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCD  219 (893)
T ss_pred             CccceeEEEeccCCceEEeccccceEEEEEecccccc--ceEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEec
Confidence            9999999999  6789999999999999999887652  134456688888899999988  789999999999999775


Q ss_pred             C-----------------------Cce-----------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE
Q 003579          170 T-----------------------KKK-----------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE  215 (809)
Q Consensus       170 ~-----------------------~~~-----------~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~  215 (809)
                      .                       ++.           .+-+......|++.+|++..+.||+|..+|...+|.+..-..
T Consensus       220 ~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l  299 (893)
T KOG0291|consen  220 LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL  299 (893)
T ss_pred             CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE
Confidence            1                       111           122333358899999999999999999999999999999999


Q ss_pred             EEEEeccCCCcEEEEEEecCCCCEEEEEc-CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEE
Q 003579          216 LVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (809)
Q Consensus       216 ~~~~~~~~~~~V~~l~fs~dg~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~v  294 (809)
                      ++.+... ..+|..++|+..|. .+|.|+ .-|.+.||++.+...+-..+ +|...+++++++|||.++++|+.||.|++
T Consensus       300 ih~LSis-~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  300 IHSLSIS-DQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             EEEeecc-cceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            9999886 67999999999999 778777 45899999999998888888 99999999999999999999999999999


Q ss_pred             EEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (809)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (809)
                      ||...+    -+..++..|...|+.+.|+..|+.+++++-||+|+.||+.....-+.+..                    
T Consensus       377 Wn~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~--------------------  432 (893)
T KOG0291|consen  377 WNTQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS--------------------  432 (893)
T ss_pred             EeccCc----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC--------------------
Confidence            987665    68899999999999999999999999999999999999987766555432                    


Q ss_pred             ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEC
Q 003579          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNL  453 (809)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g-~i~i~~~  453 (809)
                                                                     ..+....|++..|.|..+.+|+.|. .|++|++
T Consensus       433 -----------------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~  465 (893)
T KOG0291|consen  433 -----------------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV  465 (893)
T ss_pred             -----------------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEe
Confidence                                                           1235678999999999999999886 8999999


Q ss_pred             CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC-CceeeeeecCCCeEEEEEeeCCCEEEE
Q 003579          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLAT  532 (809)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~  532 (809)
                      ++|+.+..+.        +|.++|.+++|+|.+..|++++.|.+||+||+-. .....+++....+..++|+|+|+-||+
T Consensus       466 qTGqllDiLs--------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV  537 (893)
T KOG0291|consen  466 QTGQLLDILS--------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV  537 (893)
T ss_pred             ecCeeeehhc--------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE
Confidence            9999999886        9999999999999999999999999999999754 456778888899999999999999999


Q ss_pred             EeCCCeEEEEEcCCCeEEEEEec--------------------CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEE
Q 003579          533 VADDLVIRLFDVVALRMVRKFEG--------------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (809)
Q Consensus       533 ~~~d~~I~v~d~~~~~~~~~~~~--------------------h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i  592 (809)
                      +.-||.|.+||.+.+..+..+.|                    .....+.+++|+||.+|++|++...|++||++++-++
T Consensus       538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll  617 (893)
T KOG0291|consen  538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL  617 (893)
T ss_pred             EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence            99999999999987766544332                    2246889999999999999999999999999887666


Q ss_pred             EEeee---------------------------------------------------------CcceEEEEEcCCCCeEEE
Q 003579          593 DAIHV---------------------------------------------------------DVSITALSLSPNMDVLAT  615 (809)
Q Consensus       593 ~~~~~---------------------------------------------------------~~~v~~l~~spdg~~lat  615 (809)
                      +.++.                                                         .-.|.++.|||+|+.+|.
T Consensus       618 kkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAa  697 (893)
T KOG0291|consen  618 KKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAA  697 (893)
T ss_pred             eeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeee
Confidence            55431                                                         002889999999999999


Q ss_pred             EEeCCCeEEEeec--CcccCCCCC
Q 003579          616 AHVDQNGVYLWVN--RCMFSGDSN  637 (809)
Q Consensus       616 ~~~d~~~i~lW~~--~~~~~~~~~  637 (809)
                      ++..|  +.||.+  ...|.|..+
T Consensus       698 atTEG--l~IYsld~~~~FDPf~L  719 (893)
T KOG0291|consen  698 ATTEG--LLIYSLDTTILFDPFDL  719 (893)
T ss_pred             ecccc--eEEEecCCceEEccccc
Confidence            99987  667765  445566543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.4e-50  Score=395.95  Aligned_cols=561  Identities=16%  Similarity=0.216  Sum_probs=442.6

Q ss_pred             CCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe---EEEEECCe---eEE-
Q 003579           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAH---QVA-   87 (809)
Q Consensus        15 ~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~---~~~-   87 (809)
                      .++|..+......--|.++.|+++.+-+++++..+.+...|...++-..++|.|-|+|+|+.   |+||+...   .++ 
T Consensus        18 Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn   97 (603)
T KOG0318|consen   18 RGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN   97 (603)
T ss_pred             CCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee
Confidence            34555544445556678889999999999999999999999999999999999999999976   99999744   232 


Q ss_pred             EEccccccEEEEEE--eCCEEEEEeCC----CcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCC
Q 003579           88 TWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (809)
Q Consensus        88 ~~~~h~~~V~~l~~--~g~~l~s~~~d----g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (809)
                      +++.-.++|..|.|  ++++|++.++.    |.+..||  ++..    +..+..|...+.+|.|-|... -++++|+.|+
T Consensus        98 ef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~S----vGei~GhSr~ins~~~KpsRP-fRi~T~sdDn  170 (603)
T KOG0318|consen   98 EFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNS----VGEITGHSRRINSVDFKPSRP-FRIATGSDDN  170 (603)
T ss_pred             eeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCc----cceeeccceeEeeeeccCCCc-eEEEeccCCC
Confidence            27788999999998  58899888753    2355665  4444    678888999999999999876 4899999999


Q ss_pred             eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe--ccCCCcEEEEEEecCCCCE
Q 003579          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSDGQPL  239 (809)
Q Consensus       162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~V~~l~fs~dg~~~  239 (809)
                      +|.+|+-.-.|.-.++..|..-|.|+.|+|||.++|+++.||.+.+||-++++.+..+.  ..|++.|.+++|+||++ .
T Consensus       171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~  249 (603)
T KOG0318|consen  171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-Q  249 (603)
T ss_pred             eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-e
Confidence            99999977778888889999999999999999999999999999999999999999998  24589999999999999 8


Q ss_pred             EEEEcCCCcEEEEECCCceeeeeeecccc--cceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579          240 LASGASSGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (809)
Q Consensus       240 lasg~~dg~I~iwdl~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (809)
                      +++++.|.+++|||+.+++++.++..+..  ..-..+-|-  ...|++.+.+|.|.+++.+..    ..++.+.||...|
T Consensus       250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~----~~~~~i~GHnK~I  323 (603)
T KOG0318|consen  250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP----SVLKVISGHNKSI  323 (603)
T ss_pred             EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC----Chhheecccccce
Confidence            99999999999999999999998874443  344455565  558999999999999976554    3677888999999


Q ss_pred             eeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec
Q 003579          318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (809)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  397 (809)
                      +++..++++++|++|+.||.|.-|+..++...+.....+                -..|..+....     -..+++++.
T Consensus       324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h----------------~nqI~~~~~~~-----~~~~~t~g~  382 (603)
T KOG0318|consen  324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH----------------TNQIKGMAASE-----SGELFTIGW  382 (603)
T ss_pred             eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc----------------cceEEEEeecC-----CCcEEEEec
Confidence            999999999999999999999999998776554332221                12233333321     234555554


Q ss_pred             CCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccE
Q 003579          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (809)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (809)
                      ++ .+++.++...........   .......+++..++|..+++.+.++.+.+-+.. +....           .-.-..
T Consensus       383 Dd-~l~~~~~~~~~~t~~~~~---~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~-~~~~~-----------~~~y~~  446 (603)
T KOG0318|consen  383 DD-TLRVISLKDNGYTKSEVV---KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT-KVSSI-----------PIGYES  446 (603)
T ss_pred             CC-eEEEEecccCccccccee---ecCCCceeEEEcCCCCEEEEEecCcEEEEecCC-cceee-----------cccccc
Confidence            43 445554443332222111   112455589999999888888777655443332 22111           233567


Q ss_pred             EEEEEcCCCCEEEEEeCcCeEEEEECCCCcee---eeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 003579          478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLK---SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (809)
Q Consensus       478 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~  554 (809)
                      .+++++|++..++.|+.||.|++|.+....+.   ..+++..+|+.++|+||+.+||++...+.+.+||+.+.+......
T Consensus       447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w  526 (603)
T KOG0318|consen  447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW  526 (603)
T ss_pred             ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee
Confidence            89999999999999999999999999986643   345666999999999999999999999999999999998865555


Q ss_pred             c-CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee--eCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          555 G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       555 ~-h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~--~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                      + |+.+|++++|+|+..++||||.|-+|.||++......-.++  |...|+.+.|- |...|++++.|.+ |++|++
T Consensus       527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~-iK~W~v  601 (603)
T KOG0318|consen  527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDAN-IKVWNV  601 (603)
T ss_pred             eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcce-eEEecc
Confidence            5 99999999999999999999999999999998654332222  23349999996 5567889999994 999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.3e-49  Score=387.96  Aligned_cols=514  Identities=17%  Similarity=0.220  Sum_probs=406.0

Q ss_pred             cCCeEEEEEEcCCeEEEEEcCccE--EEEecCCCCCCcEEEEEeCCeEEE-EECCe------EEEEECCeeEEEEccccc
Q 003579           24 LGTENFVTVSVGKAFHIYNCAKLN--LVLVGPQLPKKIRALASYRDYTFA-AYGNH------IAVVKRAHQVATWSRHSA   94 (809)
Q Consensus        24 ~~~~~~i~~~~~~~i~iwd~~~~~--~~~~~~~~~~~I~~la~~~~~~~~-a~g~~------i~vw~~~~~~~~~~~h~~   94 (809)
                      +.+.+++++.+.|.++|||..+..  +....+...++|..++++.|++.+ |.|..      +..||.+..+.++.||+.
T Consensus        69 PsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr  148 (603)
T KOG0318|consen   69 PSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSR  148 (603)
T ss_pred             CCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccce
Confidence            667888888899999999998733  333457789999999999996655 45532      899999999999999999


Q ss_pred             cEEEEEEe---CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Q 003579           95 KVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK  171 (809)
Q Consensus        95 ~V~~l~~~---g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~  171 (809)
                      .|.++.+-   .-++++|+.|++|.+|+=...+.    -.+...|..++..+-++|++  +++++.+.||++.+||-++|
T Consensus       149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~VRysPDG--~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCVRYSPDG--SRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             eEeeeeccCCCceEEEeccCCCeEEEeeCCCeee----eecccccccceeeEEECCCC--CeEEEecCCccEEEEcCCCc
Confidence            99999983   45799999999999998665555    45566788999999999999  89999999999999999999


Q ss_pred             ceEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCC--CcEEEEEEecCCCCEEEEEcCC
Q 003579          172 KKLYEFK---GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR--GAVTALAFSSDGQPLLASGASS  246 (809)
Q Consensus       172 ~~~~~~~---~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~V~~l~fs~dg~~~lasg~~d  246 (809)
                      +.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+.+.+.++.....  ..-..+-|-.  . .|++-+.+
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk--d-~lItVSl~  299 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK--D-HLITVSLS  299 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC--C-eEEEEEcC
Confidence            9999998   8999999999999999999999999999999999999999987643  3344455652  2 68888999


Q ss_pred             CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC
Q 003579          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (809)
Q Consensus       247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (809)
                      |.|.+++......+..+. +|...|+++..++++.+|++|+.||.|.-|+...+...   ...-.+|...|.+++-+..+
T Consensus       300 G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h~nqI~~~~~~~~~  375 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD---RLAGKGHTNQIKGMAASESG  375 (603)
T ss_pred             cEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc---ccccccccceEEEEeecCCC
Confidence            999999999999888888 99999999999999999999999999999987765422   11225899999999987644


Q ss_pred             CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEE
Q 003579          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (809)
Q Consensus       327 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (809)
                       .+++++.|.++++.++...........               .+...|. .++..   ..+...+++|-.   .+.+..
T Consensus       376 -~~~t~g~Dd~l~~~~~~~~~~t~~~~~---------------~lg~QP~-~lav~---~d~~~avv~~~~---~iv~l~  432 (603)
T KOG0318|consen  376 -ELFTIGWDDTLRVISLKDNGYTKSEVV---------------KLGSQPK-GLAVL---SDGGTAVVACIS---DIVLLQ  432 (603)
T ss_pred             -cEEEEecCCeEEEEecccCccccccee---------------ecCCCce-eEEEc---CCCCEEEEEecC---cEEEEe
Confidence             688899999999998865543322100               0000111 00000   011112222211   111111


Q ss_pred             eeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC
Q 003579          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (809)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  486 (809)
                      -.+..     ..  ..-.....+++++|+++.+++|+.||.|++|.+..+.......      ...|.++|++++++|++
T Consensus       433 ~~~~~-----~~--~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~------~~~h~a~iT~vaySpd~  499 (603)
T KOG0318|consen  433 DQTKV-----SS--IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK------LLEHRAAITDVAYSPDG  499 (603)
T ss_pred             cCCcc-----ee--eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee------eecccCCceEEEECCCC
Confidence            11100     00  0122567899999999999999999999999999877544322      24899999999999999


Q ss_pred             CEEEEEeCcCeEEEEECCCCceee-eee-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCe-EEEEEecCCCCeeeE
Q 003579          487 TLMISAGYHGDIKVWDFKGRDLKS-RWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-MVRKFEGHTDRITDF  563 (809)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~-~~~~~~~h~~~I~~l  563 (809)
                      .+|+++...+.+.+||..+.+... .+. +...|.+++|+|++.++|+|+-|..|.||+++... .+....+|...|+.+
T Consensus       500 ~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v  579 (603)
T KOG0318|consen  500 AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSV  579 (603)
T ss_pred             cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeE
Confidence            999999999999999999887632 223 45899999999999999999999999999998653 355556799889999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcC
Q 003579          564 CFSEDGKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       564 ~fspdg~~l~s~s~D~~I~vwd~~  587 (809)
                      .|-.+ ..|++++.|..|++|++.
T Consensus       580 ~wlde-~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  580 AWLDE-STVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEecC-ceEEeccCcceeEEeccc
Confidence            99854 578999999999999975

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-51  Score=388.90  Aligned_cols=365  Identities=21%  Similarity=0.342  Sum_probs=296.4

Q ss_pred             ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i  251 (809)
                      ++..++.||.++|.|++|+|+|.+||+|+.|.++++||+.+..++.+.+.| ...|.|++|+|||+ .||+|+.||.|++
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-~~WVlcvawsPDgk-~iASG~~dg~I~l  183 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWSPDGK-KIASGSKDGSIRL  183 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-ccEEEEEEECCCcc-hhhccccCCeEEE
Confidence            455678999999999999999999999999999999999999999999887 89999999999999 9999999999999


Q ss_pred             EECCCceeeeeeecccccceEEEEEec-----CCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC
Q 003579          252 WNLEKRRLQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (809)
Q Consensus       252 wdl~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (809)
                      ||.++|+.+..-..+|...|++++|.|     ..++|++++.||+++|||+..+    +++..+.||..+|+|++|-.+|
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----~~~~~lsgHT~~VTCvrwGG~g  259 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----TCVRTLSGHTASVTCVRWGGEG  259 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----eEEEEeccCccceEEEEEcCCc
Confidence            999999777665559999999999976     5679999999999999988766    6888999999999999998776


Q ss_pred             CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEE--
Q 003579          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV--  404 (809)
Q Consensus       327 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  404 (809)
                       +|++++.|++|++|+...+...+++....                               .|-+-+.+..+ ..+++  
T Consensus       260 -liySgS~DrtIkvw~a~dG~~~r~lkGHa-------------------------------hwvN~lalsTd-y~LRtga  306 (480)
T KOG0271|consen  260 -LIYSGSQDRTIKVWRALDGKLCRELKGHA-------------------------------HWVNHLALSTD-YVLRTGA  306 (480)
T ss_pred             -eEEecCCCceEEEEEccchhHHHhhcccc-------------------------------hheeeeeccch-hhhhccc
Confidence             89999999999999998877666654311                               11111111110 00000  


Q ss_pred             EEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeeeeCcccccccCccccEEEEEEc
Q 003579          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACD  483 (809)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (809)
                      |+-......  .........-.-...+.-..|..+++|+.|+++.+|+....+ .+...        .+|..-|+.+.|+
T Consensus       307 f~~t~~~~~--~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm--------tgHq~lVn~V~fS  376 (480)
T KOG0271|consen  307 FDHTGRKPK--SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM--------TGHQALVNHVSFS  376 (480)
T ss_pred             cccccccCC--ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh--------hchhhheeeEEEC
Confidence            000000000  000000000000001112235679999999999999976554 33333        4999999999999


Q ss_pred             CCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee
Q 003579          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (809)
Q Consensus       484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~  562 (809)
                      ||++++++++.|..|++||-.+|+.+.++..+ .++..++|+.|.++|++|+.|.++++||+++.++...+.||.+.|.+
T Consensus       377 Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~  456 (480)
T KOG0271|consen  377 PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA  456 (480)
T ss_pred             CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence            99999999999999999999999999999966 99999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEE
Q 003579          563 FCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       563 l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      +.|+|||..+++|+.|..+++|.
T Consensus       457 vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  457 VDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.4e-49  Score=402.36  Aligned_cols=581  Identities=15%  Similarity=0.223  Sum_probs=414.1

Q ss_pred             cccceeeeEecCC---cceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEec--CCCCCCcEEEEEeCCeEEEEECCe--
Q 003579            4 FEPYKAIGYITSS---VPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVG--PQLPKKIRALASYRDYTFAAYGNH--   76 (809)
Q Consensus         4 ~~p~r~~g~vs~~---v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~--~~~~~~I~~la~~~~~~~~a~g~~--   76 (809)
                      |.|--+.|.+.++   +-|.+...+.+..+++++...+.+||++++.+....  ......|+|+..+++...+|.|..  
T Consensus         8 ye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG   87 (888)
T KOG0306|consen    8 YEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG   87 (888)
T ss_pred             ccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc
Confidence            5555666777753   445544455678888889999999999999443322  234468999999999888877644  


Q ss_pred             -EEEEECC--eeEEEEccccccEEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCC
Q 003579           77 -IAVVKRA--HQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL  151 (809)
Q Consensus        77 -i~vw~~~--~~~~~~~~h~~~V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  151 (809)
                       |++|+..  ....++.||+..|+.+.++  |..|+|||.|+.|.|||+-...-    ...+..|...+....|..+.  
T Consensus        88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G----l~rL~GHkd~iT~~~F~~~~--  161 (888)
T KOG0306|consen   88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG----LFRLRGHKDSITQALFLNGD--  161 (888)
T ss_pred             eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee----eEEeecchHHHhHHhccCCC--
Confidence             9999986  5566799999999999995  99999999999999999988776    56677777777777777766  


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC------------eEEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD------------EELVTF  219 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~------------~~~~~~  219 (809)
                      +.+++.+.|+.|++||+++..+..+.-.|.+.|.++++.+  +.+++++.|+.+.+|++...            +...++
T Consensus       162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            7899999999999999999999999999999999999998  68999999999999999311            111222


Q ss_pred             eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee-----------------------------------eeee
Q 003579          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-----------------------------------SVIR  264 (809)
Q Consensus       220 ~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~-----------------------------------~~~~  264 (809)
                      ....++..-.++..++++ +++.-+.|..+.++.+.+...+                                   ..++
T Consensus       240 ~rqsk~R~i~l~~d~s~r-~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir  318 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDR-FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR  318 (888)
T ss_pred             eeccCCceeEEeecCccc-EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence            222234444445555555 5555556666666655432100                                   0000


Q ss_pred             cccccceEEEEEecCCC---EEEEEcCCCcEEEEEeeCCCCC------ceeEEeccCCCCCCeeEEEecCCCEEEEEECC
Q 003579          265 EAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDGD------PRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (809)
Q Consensus       265 ~~h~~~V~~l~~~~~~~---~l~s~s~d~~i~vw~~~~~~~~------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d  335 (809)
                        -...+.++.+.|++.   .|++ -.++++..+.++.....      ..-+.....- ..|.+++++.+...+++|+ .
T Consensus       319 --~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR-~dVRsl~vS~d~~~~~Sga-~  393 (888)
T KOG0306|consen  319 --TSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHR-SDVRSLCVSSDSILLASGA-G  393 (888)
T ss_pred             --chhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccch-hheeEEEeecCceeeeecC-C
Confidence              112344455544332   2222 33455555554441111      0011111111 1255555555554444443 3


Q ss_pred             CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecce
Q 003579          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (809)
Q Consensus       336 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (809)
                      +++++|+..+.++++.+..+..                   .+..+     -.|+..+..+...+.+.++++....+   
T Consensus       394 ~SikiWn~~t~kciRTi~~~y~-------------------l~~~F-----vpgd~~Iv~G~k~Gel~vfdlaS~~l---  446 (888)
T KOG0306|consen  394 ESIKIWNRDTLKCIRTITCGYI-------------------LASKF-----VPGDRYIVLGTKNGELQVFDLASASL---  446 (888)
T ss_pred             CcEEEEEccCcceeEEeccccE-------------------EEEEe-----cCCCceEEEeccCCceEEEEeehhhh---
Confidence            3455555555555555554310                   00000     12344444445555555555544322   


Q ss_pred             eeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CceeeeeeCcccccccCccccEEEEEEcCCCCEEE
Q 003579          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (809)
Q Consensus       416 ~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  490 (809)
                       +.....|.+.+.+++.+||+..+++|+.|.+|++|+..-     |.....+... ....-.-...|.|+.++||+++|+
T Consensus       447 -~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~-~~rtLel~ddvL~v~~Spdgk~La  524 (888)
T KOG0306|consen  447 -VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK-HTRTLELEDDVLCVSVSPDGKLLA  524 (888)
T ss_pred             -hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec-cceEEeccccEEEEEEcCCCcEEE
Confidence             333346789999999999999999999999999999642     2221111100 001113457899999999999999


Q ss_pred             EEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCC
Q 003579          491 SAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG  569 (809)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg  569 (809)
                      .+-.|.++++|-+.+-+..-.+..+ -|+.||..+||++++++|+.|.+|++|-++-|.+.+.|-+|.+.|.++.|-|+.
T Consensus       525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~  604 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT  604 (888)
T ss_pred             EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc
Confidence            9999999999999998887776555 899999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCccEEEEeeeCc-ceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          570 KWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       570 ~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                      ..+.++|.|+.|+-||-..-++++.+..|. .|++++.+|+|.|+++++.|. +|++|.-
T Consensus       605 ~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~-sIRlwE~  663 (888)
T KOG0306|consen  605 HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK-SIRLWER  663 (888)
T ss_pred             eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc-eeEeeec
Confidence            999999999999999999989999887655 599999999999999999998 6999983

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-49  Score=408.89  Aligned_cols=489  Identities=14%  Similarity=0.212  Sum_probs=411.3

Q ss_pred             cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeE--EEEECCe---EEEEECC-e--eEEEEcccccc
Q 003579           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT--FAAYGNH---IAVVKRA-H--QVATWSRHSAK   95 (809)
Q Consensus        24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~--~~a~g~~---i~vw~~~-~--~~~~~~~h~~~   95 (809)
                      +.+..+++++.|+.++|||+..+.+...+.+|++.|.++.|+|+..  .+++|..   +++|+.. +  +++.+..|.+.
T Consensus       115 ~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~  194 (775)
T KOG0319|consen  115 PTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSA  194 (775)
T ss_pred             CCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhh
Confidence            5678899999999999999999999999999999999999999943  3566544   9999864 2  35568999999


Q ss_pred             EEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC---CCCCEEEEEeCCCeEEEEeCCC
Q 003579           96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD---TYLNKVIVGSQEGSLQLWNIST  170 (809)
Q Consensus        96 V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~l~~~~~dg~i~lwd~~~  170 (809)
                      |+++.+  ++..+++++.|..|.|||+.+.+.    .++++.-.... ++.+-++   +...++++++.+|.+++||.++
T Consensus       195 vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~----l~~lp~ye~~E-~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es  269 (775)
T KOG0319|consen  195 VTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK----LKTLPLYESLE-SVVRLREELGGKGEYIITAGGSGVVQYWDSES  269 (775)
T ss_pred             eeeeeeccCCceEEEeccCcEEEEeehhhhhh----hheechhhhee-eEEEechhcCCcceEEEEecCCceEEEEeccc
Confidence            999997  799999999999999999976665    34443333322 3344443   1114799999999999999999


Q ss_pred             CceEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579          171 KKKLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (809)
Q Consensus       171 ~~~~~~~~~~-~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I  249 (809)
                      +++++..+.. ...+..+...+....++..+.+..+.++|.++.+....+.+. .+.|.+++|-.....+||++++.+.+
T Consensus       270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~-ndEI~Dm~~lG~e~~~laVATNs~~l  348 (775)
T KOG0319|consen  270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY-NDEILDMKFLGPEESHLAVATNSPEL  348 (775)
T ss_pred             chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC-chhheeeeecCCccceEEEEeCCCce
Confidence            9988766533 344777777776667777788899999999999999998876 67899999986555599999999999


Q ss_pred             EEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC-CCE
Q 003579          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRH  328 (809)
Q Consensus       250 ~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~  328 (809)
                      ++|++.+..+. .+. +|+..|.++....+|-+|+||+.|+++++|.++.......++....+|.+.|.+++++.. -.+
T Consensus       349 r~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf  426 (775)
T KOG0319|consen  349 RLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF  426 (775)
T ss_pred             EEEecCCCceE-EEe-CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence            99998887666 555 999999999966677899999999999999997666666677788899999999999774 468


Q ss_pred             EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (809)
Q Consensus       329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (809)
                      |+++|.|+++++|++...+......                      +                +               
T Consensus       427 fvsvS~D~tlK~W~l~~s~~~~~~~----------------------~----------------~---------------  453 (775)
T KOG0319|consen  427 FVSVSQDCTLKLWDLPKSKETAFPI----------------------V----------------L---------------  453 (775)
T ss_pred             EEEecCCceEEEecCCCcccccccc----------------------e----------------e---------------
Confidence            9999999999999987632221100                      0                0               


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (809)
                            ........|...|.+++++|+.+.+++|+.|.+.++|++........+.        +|...|.++.|++..+.
T Consensus       454 ------~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--------GH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  454 ------TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--------GHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             ------hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--------CCccceEEEEeccccce
Confidence                  0000112466899999999999999999999999999999888888886        99999999999999999


Q ss_pred             EEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC
Q 003579          489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (809)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp  567 (809)
                      ++|++.|++|+||.+.+..++++++.+ +.|..+.|-.+++.|++++.||-|++|++.+.++++++.+|.++|.+++-+|
T Consensus       520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~  599 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP  599 (775)
T ss_pred             eEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence            999999999999999999999999965 8999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcC
Q 003579          568 DGKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       568 dg~~l~s~s~D~~I~vwd~~  587 (809)
                      .+.+++||+.||.|.+|.=.
T Consensus       600 ~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  600 LLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             ccceeEecCCCeEEEEeecC
Confidence            99999999999999999533

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.5e-47  Score=389.55  Aligned_cols=526  Identities=17%  Similarity=0.237  Sum_probs=429.7

Q ss_pred             CCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEE-CCe---EEEEECCeeEEEEc
Q 003579           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH---IAVVKRAHQVATWS   90 (809)
Q Consensus        15 ~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~---i~vw~~~~~~~~~~   90 (809)
                      +++-|+    ++.+-+..++|+.+.+||+++.+-.-..-.+...|++++.||+|.++.+ ...   +.+=-..+.+.+..
T Consensus        18 Gnl~ft----~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f   93 (893)
T KOG0291|consen   18 GNLVFT----KDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRF   93 (893)
T ss_pred             CcEEEC----CCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEE
Confidence            445555    5667788899999999999986544444456889999999999877654 332   33322333333333


Q ss_pred             cccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCcc--c--cceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEE
Q 003579           91 RHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEE--N--LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ  164 (809)
Q Consensus        91 ~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~--~--~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~  164 (809)
                      .-+.+|.++.|  +|.++|.+. .+.+.||.......  .  ....+++..+-.-+.+.-|+.+.  +.+++|+.|-+++
T Consensus        94 ~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS--r~l~~gsrD~s~r  170 (893)
T KOG0291|consen   94 NFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS--RLLVTGSRDLSAR  170 (893)
T ss_pred             eecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC--ceEEeccccceEE
Confidence            34678889887  677888776 78899999876544  1  22345566677777788899998  8999999999999


Q ss_pred             EEeCCCCce--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-----------------------CeE----
Q 003579          165 LWNISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-----------------------DEE----  215 (809)
Q Consensus       165 lwd~~~~~~--~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~-----------------------~~~----  215 (809)
                      +|.++..+-  .+.+.+|...|.++-|..+..-+.+.+.||.+.+|....                       ++.    
T Consensus       171 l~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~  250 (893)
T KOG0291|consen  171 LFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK  250 (893)
T ss_pred             EEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence            999987766  677899999999999999999999999999999998761                       111    


Q ss_pred             -E-----EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC
Q 003579          216 -L-----VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (809)
Q Consensus       216 -~-----~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d  289 (809)
                       .     ..+.......|++.+|++... +||+|-.+|...+|.+..-.+++.+. -...+|..+.|+..|.+|+.|+..
T Consensus       251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LS-is~~~I~t~~~N~tGDWiA~g~~k  328 (893)
T KOG0291|consen  251 IFWYKTKKHYLNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLS-ISDQKILTVSFNSTGDWIAFGCSK  328 (893)
T ss_pred             eEEEEEEeeeecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEee-cccceeeEEEecccCCEEEEcCCc
Confidence             0     111112236899999999877 99999999999999999999999998 566789999999999999998764


Q ss_pred             -CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchh
Q 003579          290 -NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  368 (809)
Q Consensus       290 -~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (809)
                       |.+-||++...    ..+....||...+++++|+|||+++++|+.||.|++||...+-+...+                
T Consensus       329 lgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF----------------  388 (893)
T KOG0291|consen  329 LGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF----------------  388 (893)
T ss_pred             cceEEEEEeecc----ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe----------------
Confidence             89999998876    456667899999999999999999999999999999998765443333                


Q ss_pred             hhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003579          369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  448 (809)
Q Consensus       369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i  448 (809)
                                                                          ..|.+.|+.+.|+..|+.+++.+-||+|
T Consensus       389 ----------------------------------------------------teHts~Vt~v~f~~~g~~llssSLDGtV  416 (893)
T KOG0291|consen  389 ----------------------------------------------------TEHTSGVTAVQFTARGNVLLSSSLDGTV  416 (893)
T ss_pred             ----------------------------------------------------ccCCCceEEEEEEecCCEEEEeecCCeE
Confidence                                                                3577999999999999999999999999


Q ss_pred             EEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC-eEEEEECCCCceeeeeecC-CCeEEEEEeeC
Q 003579          449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV  526 (809)
Q Consensus       449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~  526 (809)
                      +.||+......+++..       .......+++.+|.|.++..|+.|. .|.+|++++|+++..+..+ +||.+++|+|+
T Consensus       417 RAwDlkRYrNfRTft~-------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~  489 (893)
T KOG0291|consen  417 RAWDLKRYRNFRTFTS-------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD  489 (893)
T ss_pred             EeeeecccceeeeecC-------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence            9999999999888863       4456678999999999999988775 5999999999999999877 99999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeee--------
Q 003579          527 NGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV--------  597 (809)
Q Consensus       527 ~~~la~~~~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~--------  597 (809)
                      +..||+++.|.+||+||+-.. ..+.++. +...+++++|+|||+.|++++.||.|.+||+..+..+..+.+        
T Consensus       490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR  568 (893)
T KOG0291|consen  490 GSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGR  568 (893)
T ss_pred             cCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccc
Confidence            999999999999999998654 3455555 778899999999999999999999999999987765533321        


Q ss_pred             -------------CcceEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579          598 -------------DVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (809)
Q Consensus       598 -------------~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (809)
                                   ....+.+++|+||.++++|+... .|.+|++..
T Consensus       569 ~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn-~iCiY~v~~  613 (893)
T KOG0291|consen  569 KETDRITAENSAKGKTFTTICYSADGKCILAGGESN-SICIYDVPE  613 (893)
T ss_pred             cccceeehhhcccCCceEEEEEcCCCCEEEecCCcc-cEEEEECch
Confidence                         13489999999999999999887 599999864

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9e-49  Score=372.26  Aligned_cols=326  Identities=19%  Similarity=0.298  Sum_probs=290.3

Q ss_pred             EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEe
Q 003579          218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (809)
Q Consensus       218 ~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~  297 (809)
                      .+.+ |.++|.|++|+|+|. .|++|+.|.++++||+.+.....+.+ +|...|.+++|+|||+.|++|+.||+|++||-
T Consensus       110 S~~G-H~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  110 SIAG-HGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             ccCC-CCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            3444 489999999999999 99999999999999999999999999 99999999999999999999999999999976


Q ss_pred             eCCCCCceeEEeccCCCCCCeeEEEec-----CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhc
Q 003579          298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  372 (809)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~-----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (809)
                      .++.   ...+.+.+|...|++++|.|     ..++|++++.||++++||+..+.....+                    
T Consensus       187 ktg~---~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l--------------------  243 (480)
T KOG0271|consen  187 KTGQ---QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL--------------------  243 (480)
T ss_pred             CCCC---cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------
Confidence            6654   45677789999999999987     6779999999999999998765544333                    


Q ss_pred             cCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003579          373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN  452 (809)
Q Consensus       373 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~  452 (809)
                                                                      .+|...|+|+.+-.+ .++++|+.|++|++|+
T Consensus       244 ------------------------------------------------sgHT~~VTCvrwGG~-gliySgS~DrtIkvw~  274 (480)
T KOG0271|consen  244 ------------------------------------------------SGHTASVTCVRWGGE-GLIYSGSQDRTIKVWR  274 (480)
T ss_pred             ------------------------------------------------ccCccceEEEEEcCC-ceEEecCCCceEEEEE
Confidence                                                            367789999999765 4899999999999999


Q ss_pred             CCCCceeeeeeCcccccccCccccEEEEEEc-----------CCCC-------------------------EEEEEeCcC
Q 003579          453 LQSGISRGSYLDMSERSNYAHNGEVVGVACD-----------STNT-------------------------LMISAGYHG  496 (809)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----------~~~~-------------------------~l~s~~~dg  496 (809)
                      ...|.....+.        +|...|+.++.+           |.++                         .|++|+.|.
T Consensus       275 a~dG~~~r~lk--------GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~  346 (480)
T KOG0271|consen  275 ALDGKLCRELK--------GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF  346 (480)
T ss_pred             ccchhHHHhhc--------ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence            99999988876        999999999876           2233                         599999999


Q ss_pred             eEEEEECCC-CceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579          497 DIKVWDFKG-RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (809)
Q Consensus       497 ~i~iwd~~~-~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s  574 (809)
                      ++.+|+-.. .+++.....+ .-|+.+.||||++++|+++.|..|++||..+|+.+..|+||-+.|..++||.|.|+|++
T Consensus       347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS  426 (480)
T KOG0271|consen  347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS  426 (480)
T ss_pred             eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence            999998653 4466555444 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          575 SGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       575 ~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                      ||.|.+++|||+.+.++..-+.+|.. |.++.|+|||..+++++.|. .+++|.
T Consensus       427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk-v~~lw~  479 (480)
T KOG0271|consen  427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK-VLRLWR  479 (480)
T ss_pred             cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce-EEEeec
Confidence            99999999999999999988886654 99999999999999999999 599995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-45  Score=379.15  Aligned_cols=485  Identities=15%  Similarity=0.239  Sum_probs=395.0

Q ss_pred             cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe---EEEEECCee--EEEEccccccEEE
Q 003579           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ--VATWSRHSAKVNL   98 (809)
Q Consensus        24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~~--~~~~~~h~~~V~~   98 (809)
                      ++.-.++++..||+|+||+..+......+++|...|+++.|+..|..+|+|+.   |.|||.-.+  ..++.||+..|+.
T Consensus        75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~  154 (888)
T KOG0306|consen   75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ  154 (888)
T ss_pred             CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence            34556688888999999999999999999999999999999999999999876   999997444  5559999999999


Q ss_pred             EEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCC------
Q 003579           99 LLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST------  170 (809)
Q Consensus        99 l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~------  170 (809)
                      ..|.  .++|++++.|+.|++||+++..+    ..+.-.+.+.+..+++++    +.+++++.|+.+.+|++..      
T Consensus       155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhC----f~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~  226 (888)
T KOG0306|consen  155 ALFLNGDSFLVSVSKDSMIKFWDLETQHC----FETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKE  226 (888)
T ss_pred             HhccCCCeEEEEeccCceEEEEeccccee----eeEEecccceEEEEEEec----ceEEEEecCCceEEEEeeccccccc
Confidence            9884  58999999999999999999988    777777888888888887    4688899999999999811      


Q ss_pred             ------------------CceEEE----------EcCC------------------------------------------
Q 003579          171 ------------------KKKLYE----------FKGW------------------------------------------  180 (809)
Q Consensus       171 ------------------~~~~~~----------~~~~------------------------------------------  180 (809)
                                        ++.+..          ..++                                          
T Consensus       227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s  306 (888)
T KOG0306|consen  227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS  306 (888)
T ss_pred             ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence                              001100          0000                                          


Q ss_pred             -------------CCCEEEEEEcCCCC--EEEEEeCCCeEEEEEeeC-CeE------E--EEEeccCCCcEEEEEEecCC
Q 003579          181 -------------GSSISSCVSSPALD--VVAVGCSDGKIHVHNVRY-DEE------L--VTFTHSMRGAVTALAFSSDG  236 (809)
Q Consensus       181 -------------~~~I~~l~~sp~~~--~la~g~~dg~i~iwd~~~-~~~------~--~~~~~~~~~~V~~l~fs~dg  236 (809)
                                   ...|.++.+.|.+.  ..++-..+.++..|.++. +..      +  .++ .+|...|.+++|+.+.
T Consensus       307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~  385 (888)
T KOG0306|consen  307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDS  385 (888)
T ss_pred             HHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCc
Confidence                         23456666666543  122226677888887765 111      1  222 3458899999999988


Q ss_pred             CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579          237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (809)
Q Consensus       237 ~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (809)
                      . ++++|+ .+.|.+|+..+.+++.++.   .+.+.+..|.|.++++++|...|.+.++|+...    .++.....|.+.
T Consensus       386 ~-~~~Sga-~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdga  456 (888)
T KOG0306|consen  386 I-LLASGA-GESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASA----SLVETIRAHDGA  456 (888)
T ss_pred             e-eeeecC-CCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehh----hhhhhhhccccc
Confidence            6 666655 6789999999999999987   238999999999999999999999999998776    466677799999


Q ss_pred             CeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579          317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (809)
Q Consensus       317 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (809)
                      +..++..||++.+++||.|.+|++||..-....                                               
T Consensus       457 IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-----------------------------------------------  489 (888)
T KOG0306|consen  457 IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-----------------------------------------------  489 (888)
T ss_pred             eeeeeecCCCCceEEecCCcEEEEEeEEEEecc-----------------------------------------------
Confidence            999999999999999999999999997532210                                               


Q ss_pred             cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcccc
Q 003579          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE  476 (809)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~  476 (809)
                       ...+-++..+..    ...+    .-...|.|+.+||||++++++--|.++.+|-+.+-+..-.+        ++|.-+
T Consensus       490 -~gt~~k~lsl~~----~rtL----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--------YGHkLP  552 (888)
T KOG0306|consen  490 -PGTQKKVLSLKH----TRTL----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--------YGHKLP  552 (888)
T ss_pred             -Ccccceeeeecc----ceEE----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee--------cccccc
Confidence             000000001100    0011    12378999999999999999999999999999998777665        599999


Q ss_pred             EEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec-CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 003579          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG  555 (809)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~  555 (809)
                      |.++.++||+++++||+.|..|++|-+.-|.+.+.+-. ...|.++.|.|...++.+++.|+.|+-||-+..+.++.+.+
T Consensus       553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~  632 (888)
T KOG0306|consen  553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG  632 (888)
T ss_pred             eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc
Confidence            99999999999999999999999999999998887755 48999999999999999999999999999999999999999


Q ss_pred             CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCcc
Q 003579          556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (809)
Q Consensus       556 h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~  590 (809)
                      |...|.+++.+|+|.+++|+|.|.+||+|.-....
T Consensus       633 H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  633 HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             chheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence            99999999999999999999999999999865533

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5.9e-43  Score=356.68  Aligned_cols=547  Identities=17%  Similarity=0.228  Sum_probs=388.1

Q ss_pred             CCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe-----EEEEECC--eeEEEEccccccEE
Q 003579           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----IAVVKRA--HQVATWSRHSAKVN   97 (809)
Q Consensus        25 ~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~-----i~vw~~~--~~~~~~~~h~~~V~   97 (809)
                      +...++++..|..+.+||+++.++-+....+..+++|+||+++|+|+|+|..     ++||+..  ..++++..|+-.|+
T Consensus        47 p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vt  126 (1080)
T KOG1408|consen   47 PCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVT  126 (1080)
T ss_pred             ccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccce
Confidence            4456899999999999999998888888888999999999999999999874     9999974  45778999999999


Q ss_pred             EEEE--eCCEEEEEeCC--CcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce
Q 003579           98 LLLL--FGEHILSIDID--GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK  173 (809)
Q Consensus        98 ~l~~--~g~~l~s~~~d--g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~  173 (809)
                      |++|  .++|+++.+..  -.|.+||......    ...-+. ...+...+|+.++  .++++.+. ..|++|.++.++.
T Consensus       127 cvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~----~asnki-ss~Vsav~fsEdg--SYfvT~gn-rHvk~wyl~~~~K  198 (1080)
T KOG1408|consen  127 CVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS----GASNKI-SSVVSAVAFSEDG--SYFVTSGN-RHVKLWYLQIQSK  198 (1080)
T ss_pred             eeeecCCCcEEEeeccccceEEEhhhhhhccc----cccccc-ceeEEEEEEccCC--ceeeeeee-eeEEEEEeecccc
Confidence            9998  48999998874  4577887755433    111111 2334567799998  77888754 6799999987763


Q ss_pred             EEE---EcCCCCCEEEEEEcCCCCEEEEEeCC-------------CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCC
Q 003579          174 LYE---FKGWGSSISSCVSSPALDVVAVGCSD-------------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (809)
Q Consensus       174 ~~~---~~~~~~~I~~l~~sp~~~~la~g~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~  237 (809)
                      ...   +.+...-...+.   +..++++++.-             |.+.-|  .+.+.+-.+..-......||+.+.+  
T Consensus       199 ykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvEF--SsRRLLDKWVqcRTTnAnCIcVs~r--  271 (1080)
T KOG1408|consen  199 YKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVEF--SSRRLLDKWVQCRTTNANCICVSSR--  271 (1080)
T ss_pred             ccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceeee--chhhhhhhhhhhhccccceeeeecc--
Confidence            221   111111111111   12233333322             222222  1122222221111334677887754  


Q ss_pred             CEEEEEcCCCcEEEEECCCceeeeeeecccc-----------------------cceEEEEEecCCCEEEEEcCCCcEEE
Q 003579          238 PLLASGASSGVISIWNLEKRRLQSVIREAHD-----------------------NAIISLHFFANEPVLMSASADNSIKM  294 (809)
Q Consensus       238 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~-----------------------~~V~~l~~~~~~~~l~s~s~d~~i~v  294 (809)
                       ++++|+.+|.|++|+.++-..+.++...|.                       ....++.|.+....|.+.-.|.++++
T Consensus       272 -~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYv  350 (1080)
T KOG1408|consen  272 -LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYV  350 (1080)
T ss_pred             -eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEE
Confidence             899999999999999988766666553331                       12346788888889999999999999


Q ss_pred             EEeeCCCCCceeEEeccCCCCCCeeEEEec-C----------CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N----------GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (809)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~----------~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  363 (809)
                      ||++......+... .--|+..|+.+.-.| +          ...+++|+.|++||+|++........+....+.....+
T Consensus       351 WDvrD~~kvgk~~s-~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k  429 (1080)
T KOG1408|consen  351 WDVRDVNKVGKCSS-MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK  429 (1080)
T ss_pred             Eeccccccccceee-eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence            99987665444433 336888888776655 1          23689999999999999987655554443333332222


Q ss_pred             ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (809)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~  443 (809)
                      .........+-                               ...............-+....++++++||+|++|+.|.
T Consensus       430 i~y~d~~~q~~-------------------------------~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD  478 (1080)
T KOG1408|consen  430 IPYEDSTQQIM-------------------------------HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD  478 (1080)
T ss_pred             CccccCchhhh-------------------------------hhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence            21111110000                               00000000111111123346899999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC---CCCEEEEEeCcCeEEEEECCCCc-eeeeee------
Q 003579          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRD-LKSRWE------  513 (809)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~------  513 (809)
                      ..|.+++|++++-.......        +|...|.++.++.   ..++|++++.|..|++||....- ++.++.      
T Consensus       479 r~GnlrVy~Lq~l~~~~~~e--------AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  479 RGGNLRVYDLQELEYTCFME--------AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             ccCceEEEEehhhhhhhhee--------cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            99999999999887776664        7888888888875   34778888888888888865321 111110      


Q ss_pred             --------------------------------------------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE
Q 003579          514 --------------------------------------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (809)
Q Consensus       514 --------------------------------------------~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~  549 (809)
                                                                  .+..+..|+..|..+++++++.|..|+|||+++++.
T Consensus       551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence                                                        124567788888899999999999999999999999


Q ss_pred             EEEEec---CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEE
Q 003579          550 VRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYL  625 (809)
Q Consensus       550 ~~~~~~---h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~l  625 (809)
                      ++.|+|   |.+..-.+...|.|-||++...|+++.++|.-+|+++..+.+|+. |+.+.|++|.+.|++++.|+ .|++
T Consensus       631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg-CIFv  709 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG-CIFV  709 (1080)
T ss_pred             eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCc-eEEE
Confidence            999986   667788899999999999999999999999999999999988876 99999999999999999999 5999


Q ss_pred             eec
Q 003579          626 WVN  628 (809)
Q Consensus       626 W~~  628 (809)
                      |.+
T Consensus       710 W~l  712 (1080)
T KOG1408|consen  710 WKL  712 (1080)
T ss_pred             EEC
Confidence            986

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-42  Score=335.76  Aligned_cols=283  Identities=20%  Similarity=0.325  Sum_probs=262.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-CCCEEEEEcCCCcEEEEECCCc
Q 003579          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKR  257 (809)
Q Consensus       179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-g~~~lasg~~dg~I~iwdl~~~  257 (809)
                      +-..+|..+.||++++.||+|+.+|.+++|+..+...+.+|.+| .+.|.++.|+|. ...-||+|+.||++++|++++.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH-TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc-ccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            45789999999999999999999999999999999999999887 899999999998 3447999999999999999999


Q ss_pred             eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (809)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (809)
                      .++..+. +|...|..++|+|+|++|+|++.|.+-++||+.+.    ..+....||+.+|.+++|.+||..+++||.|..
T Consensus       252 ~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk----~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~  326 (459)
T KOG0272|consen  252 TPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK----SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL  326 (459)
T ss_pred             cchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccc----hhhHhhcccccccceeEecCCCceeeccCccch
Confidence            9999998 99999999999999999999999999999999887    345566799999999999999999999999999


Q ss_pred             EEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceee
Q 003579          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (809)
Q Consensus       338 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (809)
                      -++||++++.++..                                                                  
T Consensus       327 ~RvWDlRtgr~im~------------------------------------------------------------------  340 (459)
T KOG0272|consen  327 GRVWDLRTGRCIMF------------------------------------------------------------------  340 (459)
T ss_pred             hheeecccCcEEEE------------------------------------------------------------------
Confidence            99999876643221                                                                  


Q ss_pred             ecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCe
Q 003579          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (809)
Q Consensus       418 ~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (809)
                                                                  +        .+|..+|.+++|+|+|..|+||+.|++
T Consensus       341 --------------------------------------------L--------~gH~k~I~~V~fsPNGy~lATgs~Dnt  368 (459)
T KOG0272|consen  341 --------------------------------------------L--------AGHIKEILSVAFSPNGYHLATGSSDNT  368 (459)
T ss_pred             --------------------------------------------e--------cccccceeeEeECCCceEEeecCCCCc
Confidence                                                        1        289999999999999999999999999


Q ss_pred             EEEEECCCCceeeeeecC-CCeEEEEEee-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEE
Q 003579          498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  575 (809)
Q Consensus       498 i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~  575 (809)
                      ++|||++..+.+.++..+ .-|+.+.|+| .|.+|++++.|+++++|...++.+++.+.||.+.|.+++.++|+.+++|+
T Consensus       369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS  448 (459)
T ss_pred             EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence            999999999998888776 7889999998 78899999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEE
Q 003579          576 GMDGSLRIWD  585 (809)
Q Consensus       576 s~D~~I~vwd  585 (809)
                      +.|+++++|.
T Consensus       449 s~DRT~KLW~  458 (459)
T KOG0272|consen  449 SFDRTIKLWR  458 (459)
T ss_pred             ccCceeeecc
Confidence            9999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-42  Score=334.35  Aligned_cols=279  Identities=21%  Similarity=0.386  Sum_probs=261.4

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC--CCEEEEEcCCCcEEEEEeeCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD  301 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~d~~i~vw~~~~~~  301 (809)
                      ..+|..+.|++|+. +|+||+.+|.+++|+..+...+.++. +|.+.|.++.|+|.  +..|+|++.||++++|+++.. 
T Consensus       175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-  251 (459)
T KOG0272|consen  175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-  251 (459)
T ss_pred             CCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence            67999999999999 99999999999999999999999999 99999999999997  569999999999999998876 


Q ss_pred             CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEee
Q 003579          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (809)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (809)
                         .++..+.+|...|..++|+|+|++|.+++.|.+-++||+.+....-.                              
T Consensus       252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------------------------------  298 (459)
T KOG0272|consen  252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------------------------------  298 (459)
T ss_pred             ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh------------------------------
Confidence               57778889999999999999999999999999999999876542211                              


Q ss_pred             ccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 003579          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (809)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (809)
                                                                                                      
T Consensus       299 --------------------------------------------------------------------------------  298 (459)
T KOG0272|consen  299 --------------------------------------------------------------------------------  298 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEE
Q 003579          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR  540 (809)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~  540 (809)
                              ..+|...|.+++|.+||.+++|||.|..-+|||++++.++..+..+ .+|..+.|+|+|-.+|+|+.|++++
T Consensus       299 --------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k  370 (459)
T KOG0272|consen  299 --------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCK  370 (459)
T ss_pred             --------hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEE
Confidence                    1389999999999999999999999999999999999999999877 8999999999999999999999999


Q ss_pred             EEEcCCCeEEEEEecCCCCeeeEEECC-CCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEe
Q 003579          541 LFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHV  618 (809)
Q Consensus       541 v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~  618 (809)
                      |||++..+.+.++.+|.+-|+.+.|+| .|.+|+|+|.|++++||.-.+..+++.+.+|.. |.++..+|||++++|++.
T Consensus       371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~  450 (459)
T KOG0272|consen  371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF  450 (459)
T ss_pred             EeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc
Confidence            999999999999999999999999999 789999999999999999999999999998876 999999999999999999


Q ss_pred             CCCeEEEee
Q 003579          619 DQNGVYLWV  627 (809)
Q Consensus       619 d~~~i~lW~  627 (809)
                      |. ++++|.
T Consensus       451 DR-T~KLW~  458 (459)
T KOG0272|consen  451 DR-TIKLWR  458 (459)
T ss_pred             Cc-eeeecc
Confidence            98 799996

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.5e-38  Score=324.90  Aligned_cols=582  Identities=17%  Similarity=0.197  Sum_probs=389.3

Q ss_pred             CCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeE---EEEECCe---EEEEECCe----
Q 003579           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT---FAAYGNH---IAVVKRAH----   84 (809)
Q Consensus        15 ~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~---~~a~g~~---i~vw~~~~----   84 (809)
                      +.+|-.... +...+++++.+.+|.+||..+-..+...++|..+|+|+.+-|...   ++.+|+.   |.+|+...    
T Consensus        14 ~R~~~v~sw-~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~   92 (764)
T KOG1063|consen   14 NRVPKVSSW-GPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLI   92 (764)
T ss_pred             ccccccccc-cccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheE
Confidence            455544333 566789999999999999999877888899999999999988866   5555543   99998652    


Q ss_pred             eEEEEccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCcc--ccEEEEeCCCCCCEEEEEeCCCe
Q 003579           85 QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF--TPTCIMHPDTYLNKVIVGSQEGS  162 (809)
Q Consensus        85 ~~~~~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~l~~~~~dg~  162 (809)
                      .+.++.+|...+.++.-.-......+.|+.+.+||.+..+...  ...+.+..+.  ....++.|+...-.++.|+.+..
T Consensus        93 ~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~--~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~  170 (764)
T KOG1063|consen   93 KIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFL--LAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFV  170 (764)
T ss_pred             EEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceee--ehheehhhhhHhhHHHhhhccCCcEEEEecCcceE
Confidence            3445778887777776433333333679999999996655211  2223333222  22223445332124666777778


Q ss_pred             EEEEeCCC--CceEEEEcCCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEEeeCCe-----------------------
Q 003579          163 LQLWNIST--KKKLYEFKGWGSSISSCVSSPALD---VVAVGCSDGKIHVHNVRYDE-----------------------  214 (809)
Q Consensus       163 i~lwd~~~--~~~~~~~~~~~~~I~~l~~sp~~~---~la~g~~dg~i~iwd~~~~~-----------------------  214 (809)
                      |.++.-.+  .+.+..+.||...|.+++|...+.   +||+++.|..|+||.+.-+.                       
T Consensus       171 v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l  250 (764)
T KOG1063|consen  171 VDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMIL  250 (764)
T ss_pred             EEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeee
Confidence            88886543  356788999999999999987654   89999999999999986332                       


Q ss_pred             -EEE------EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc--eeeeeee----cccccceEEEEEecCCC
Q 003579          215 -ELV------TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR----EAHDNAIISLHFFANEP  281 (809)
Q Consensus       215 -~~~------~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~--~~~~~~~----~~h~~~V~~l~~~~~~~  281 (809)
                       .+.      .+..+|.+.|+++.|+|.+. .|.+++.|.++.+|...+.  --+...+    .+...+..+..|+|++.
T Consensus       251 ~~i~~~is~eall~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~  329 (764)
T KOG1063|consen  251 EEIQYRISFEALLMGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN  329 (764)
T ss_pred             eeEEEEEehhhhhcCcccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC
Confidence             111      12246789999999999997 6788999999999987655  2222222    13355688999999999


Q ss_pred             EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHH
Q 003579          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  361 (809)
Q Consensus       282 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  361 (809)
                      .+++-+.-|..++|. ......+.......||.+.|+.+.|+|.|.+|++.|.|.+-|+|..-..++             
T Consensus       330 ~ii~~g~~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-------------  395 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-------------  395 (764)
T ss_pred             EEEEecccCcEEEEe-ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccccc-------------
Confidence            999999999999997 333345566777899999999999999999999999999999986431111             


Q ss_pred             hhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE-----EcCCC
Q 003579          362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT-----ISACG  436 (809)
Q Consensus       362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~-----~s~~g  436 (809)
                           ...++.-|.+...+....+.-..+..+..+.+++.+|+|+.      ...+.   ..-..+...+     ..|+|
T Consensus       396 -----~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a------Pk~fv---~~l~~i~g~~~~~~~~~p~g  461 (764)
T KOG1063|consen  396 -----EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA------PKSFV---KSLMAICGKCFKGSDELPDG  461 (764)
T ss_pred             -----ceeeecccccccccceeeehccCCceeeecccceeeeeecC------cHHHH---HHHHHHhCccccCchhcccc
Confidence                 01222233333333322222222223333333333333220      00000   0000111100     01111


Q ss_pred             -CEEEEEeCCCcEEEEECCCCcee------------eeeeCcc-------------cccccCccccEEEEEEcCCCCEEE
Q 003579          437 -NFAVLGTAGGWIERFNLQSGISR------------GSYLDMS-------------ERSNYAHNGEVVGVACDSTNTLMI  490 (809)
Q Consensus       437 -~~l~~g~~~g~i~i~~~~~~~~~------------~~~~~~~-------------~~~~~~h~~~v~~l~~~~~~~~l~  490 (809)
                       +.-+.|-++.-+..=...+|..-            ..+..++             ...+++|...|.+++.+|++++++
T Consensus       462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliA  541 (764)
T KOG1063|consen  462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIA  541 (764)
T ss_pred             cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEe
Confidence             11111222211111111112110            0000000             015689999999999999999999


Q ss_pred             EEeCcC-----eEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE----EEEEecCCCCe
Q 003579          491 SAGYHG-----DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM----VRKFEGHTDRI  560 (809)
Q Consensus       491 s~~~dg-----~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~----~~~~~~h~~~I  560 (809)
                      +++...     .|++|+..+-.....+..+ -.|+.++||||+++|++++.|.++.+|.......    ....+.|+.-|
T Consensus       542 SaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRII  621 (764)
T KOG1063|consen  542 SACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRII  621 (764)
T ss_pred             ehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEE
Confidence            998543     4899999988887777665 7999999999999999999999999998754321    23367899999


Q ss_pred             eeEEECCCCCEEEEEeCCCeEEEEEcCCc--cEE---EEeeeCcceEEEEEcCC-----CCeEEEEEeCCCeEEEeecC
Q 003579          561 TDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQI---DAIHVDVSITALSLSPN-----MDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       561 ~~l~fspdg~~l~s~s~D~~I~vwd~~~~--~~i---~~~~~~~~v~~l~~spd-----g~~lat~~~d~~~i~lW~~~  629 (809)
                      .+..|+||+.+++|+|.|.+|+||..+.+  +.+   ..+.+..+|+++++.|-     +..++.|-..| -|+||..+
T Consensus       622 WdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G-eI~l~~~~  699 (764)
T KOG1063|consen  622 WDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG-EIVLWRRK  699 (764)
T ss_pred             EEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEeccc-EEEEEecc
Confidence            99999999999999999999999999887  444   34556778999999872     23556666666 59999954

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2e-39  Score=307.70  Aligned_cols=341  Identities=21%  Similarity=0.296  Sum_probs=300.9

Q ss_pred             ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i  251 (809)
                      .-+.+|..|...|.+++.+|+.+++|+|+.|..-.+|++.++..+..+..| +..|+++.|+.||. +||+|+.+|.|+|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgH-KDSVt~~~Fshdgt-lLATGdmsG~v~v  132 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGH-KDSVTCCSFSHDGT-LLATGDMSGKVLV  132 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCC-CCceEEEEEccCce-EEEecCCCccEEE
Confidence            456789999999999999999999999999999999999999988888876 89999999999999 9999999999999


Q ss_pred             EECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEE
Q 003579          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (809)
Q Consensus       252 wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (809)
                      |...++.....+. ..-+.+.-+.|+|.+.+|+.|+.||++.+|.+...    ...+.+.||..++++-.|.|+|+.+++
T Consensus       133 ~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  133 FKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             EEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeEecCCCCCcccccccCCCceEEE
Confidence            9999999888886 56678899999999999999999999999988765    467778899999999999999999999


Q ss_pred             EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (809)
Q Consensus       332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (809)
                      +..||+|++|+..++++...+.+.                                                        
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~--------------------------------------------------------  231 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQA--------------------------------------------------------  231 (399)
T ss_pred             EecCceEEEEecCCCceeEEeccc--------------------------------------------------------
Confidence            999999999999988766555431                                                        


Q ss_pred             ecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEc---CCCCE
Q 003579          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD---STNTL  488 (809)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~~  488 (809)
                                 .....+++.++..+..++.|..++.+++.+..+|+.+.............+...+.++.+.   ..-.+
T Consensus       232 -----------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL  300 (399)
T KOG0296|consen  232 -----------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL  300 (399)
T ss_pred             -----------ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence                       1145667788888888999999999999998888887776532222233555555555554   45578


Q ss_pred             EEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579          489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (809)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd  568 (809)
                      .|+|+.||+|.|||+...++++...+..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|+
T Consensus       301 ~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~  379 (399)
T KOG0296|consen  301 AACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ  379 (399)
T ss_pred             hhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence            8999999999999999999999999999999999998 889999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcC
Q 003579          569 GKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       569 g~~l~s~s~D~~I~vwd~~  587 (809)
                      .++++|+|.|++.+||+++
T Consensus       380 ~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  380 KRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CcEEEEecCCCeEEEEecC
Confidence            9999999999999999976

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.9e-39  Score=297.61  Aligned_cols=289  Identities=19%  Similarity=0.353  Sum_probs=268.0

Q ss_pred             EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (809)
Q Consensus       217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~  296 (809)
                      +.+++| .+.|.++.|++|++ .+++++.||.+.|||.-+...++.+. .....|..++|+|.++++++|+-|+...||+
T Consensus        49 r~LkGH-~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   49 RTLKGH-LNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEeccc-ccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            455554 89999999999999 89999999999999999988888887 7788999999999999999999999999999


Q ss_pred             eeCC--CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579          297 FDTT--DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (809)
Q Consensus       297 ~~~~--~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (809)
                      +...  ++..+..+.+.+|.+-+.|+.|.+|+ +|++++.|.+..+||++++++...+.                     
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~---------------------  183 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH---------------------  183 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec---------------------
Confidence            9876  55567778899999999999999855 79999999999999999887655542                     


Q ss_pred             ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 003579          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNL  453 (809)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~  453 (809)
                                                                     +|.+.|.+++++| +++.+++|+.|+..++||+
T Consensus       184 -----------------------------------------------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~  216 (343)
T KOG0286|consen  184 -----------------------------------------------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV  216 (343)
T ss_pred             -----------------------------------------------CCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence                                                           5779999999999 9999999999999999999


Q ss_pred             CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEeeCCCEE
Q 003579          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLL  530 (809)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~l  530 (809)
                      +++...+.|.        +|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.+.   .+|++++||..|++|
T Consensus       217 R~~~c~qtF~--------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL  288 (343)
T KOG0286|consen  217 RSGQCVQTFE--------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL  288 (343)
T ss_pred             cCcceeEeec--------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence            9999999997        99999999999999999999999999999999999999888765   799999999999999


Q ss_pred             EEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       531 a~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      .+|..|.++.+||.-.++.+..+.||.++|+++..+|||.-++|||.|.++|||.
T Consensus       289 fagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  289 FAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999999999999999999999999999999999999994

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=325.45  Aligned_cols=484  Identities=17%  Similarity=0.251  Sum_probs=366.6

Q ss_pred             cCCeEEEEEEcC--CeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEE-CCe----EEEEECCeeEEE-Ecccccc
Q 003579           24 LGTENFVTVSVG--KAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH----IAVVKRAHQVAT-WSRHSAK   95 (809)
Q Consensus        24 ~~~~~~i~~~~~--~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~----i~vw~~~~~~~~-~~~h~~~   95 (809)
                      +++++++++-.|  .+++||++..-.++..+..|.-.++|+||+|.+.|+.+ |.+    |.||+-...+.. -..-...
T Consensus        88 ~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~  167 (1080)
T KOG1408|consen   88 QNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSV  167 (1080)
T ss_pred             CCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccccccee
Confidence            677888877754  46999999999899999999999999999999999876 544    777764332222 3345667


Q ss_pred             EEEEEE--eCCEEEEEeCCCcEEEEEcCCCcccccee---------eeEEc--------------CCccc----------
Q 003579           96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV---------GHVKL--------------DDKFT----------  140 (809)
Q Consensus        96 V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~---------~~~~~--------------~~~~~----------  140 (809)
                      |..++|  +|.|+++++ ...|++|.++.+..+..++         ..+..              ...+.          
T Consensus       168 Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF  246 (1080)
T KOG1408|consen  168 VSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF  246 (1080)
T ss_pred             EEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence            888888  799999998 8889999998876432111         00000              00000          


Q ss_pred             ----------------cEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcC-C-----------------------
Q 003579          141 ----------------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-W-----------------------  180 (809)
Q Consensus       141 ----------------~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~-----------------------  180 (809)
                                      ..|+ .-+.  .+|++|+.+|.|+++|..+..-+.+++. |                       
T Consensus       247 SsRRLLDKWVqcRTTnAnCI-cVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~  323 (1080)
T KOG1408|consen  247 SSRRLLDKWVQCRTTNANCI-CVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAI  323 (1080)
T ss_pred             chhhhhhhhhhhhcccccee-eeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCccc
Confidence                            0111 1133  5799999999999999887654444321 1                       


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE---EeccCCCcEEEEEEec------------CCCCEEEEEcC
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT---FTHSMRGAVTALAFSS------------DGQPLLASGAS  245 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~---~~~~~~~~V~~l~fs~------------dg~~~lasg~~  245 (809)
                      --...++.|+|..+.|.+...|..++|||++.-+.+..   +.- |...|..+.--|            .+  .+++++.
T Consensus       324 fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly-HS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSs  400 (1080)
T KOG1408|consen  324 FPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY-HSACIWDVENLPCNVHSPTAACLPRG--CFTTCSS  400 (1080)
T ss_pred             CCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee-ccceeeeeccccccccCcccccCCcc--ceeEecC
Confidence            01235678999999999999999999999986543322   222 255566665444            23  4889999


Q ss_pred             CCcEEEEECCCceeeeeee------------------------------------cccccceEEEEEecCCCEEEEEcCC
Q 003579          246 SGVISIWNLEKRRLQSVIR------------------------------------EAHDNAIISLHFFANEPVLMSASAD  289 (809)
Q Consensus       246 dg~I~iwdl~~~~~~~~~~------------------------------------~~h~~~V~~l~~~~~~~~l~s~s~d  289 (809)
                      |++|++||++.+..-..++                                    .....++.+++.+|++++|++|..-
T Consensus       401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~  480 (1080)
T KOG1408|consen  401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG  480 (1080)
T ss_pred             CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence            9999999998631111100                                    0123578999999999999999999


Q ss_pred             CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec---CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccc
Q 003579          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA---NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  366 (809)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  366 (809)
                      |.+++|++...    +.+.....|...|.|+.|+.   ..++|++++.|+-|.+||+...-                   
T Consensus       481 GnlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-------------------  537 (1080)
T KOG1408|consen  481 GNLRVYDLQEL----EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-------------------  537 (1080)
T ss_pred             CceEEEEehhh----hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-------------------
Confidence            99999988765    55667789999999999986   45789999999999999985431                   


Q ss_pred             hhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCC--CEEEEEeC
Q 003579          367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTA  444 (809)
Q Consensus       367 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~g~~  444 (809)
                                                                      ..+....+|...|+++.|...|  ..+++++.
T Consensus       538 ------------------------------------------------~l~qtld~HSssITsvKFa~~gln~~MiscGA  569 (1080)
T KOG1408|consen  538 ------------------------------------------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGA  569 (1080)
T ss_pred             ------------------------------------------------chhhhhcccccceeEEEEeecCCceEEEeccC
Confidence                                                            1223445778999999998887  77888888


Q ss_pred             CCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC----CCeEE
Q 003579          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVK  520 (809)
Q Consensus       445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~  520 (809)
                      |..|.+--.+.......+....   .......+..++++|..+++++++.|..|+|||+.+++..+.++..    +....
T Consensus       570 DksimFr~~qk~~~g~~f~r~t---~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK  646 (1080)
T KOG1408|consen  570 DKSIMFRVNQKASSGRLFPRHT---QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK  646 (1080)
T ss_pred             chhhheehhccccCceeccccc---cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence            8877655544333233332100   0122457899999999999999999999999999999999998754    67889


Q ss_pred             EEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579          521 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       521 ~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~  588 (809)
                      +...|.|-|+|+.+.|.++.++|..+++++.+..||...|+.+.|++|.+.|++++.||.|.||.++.
T Consensus       647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            99999999999999999999999999999999999999999999999999999999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-37  Score=314.41  Aligned_cols=472  Identities=16%  Similarity=0.206  Sum_probs=339.3

Q ss_pred             EccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (809)
Q Consensus        89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw  166 (809)
                      +..|+.+|.++.+  -..|++++-..|.|.||+.++...    ++.+......+.++.|-+..  +.+++|+.|..|++|
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm----VksfeV~~~PvRa~kfiaRk--nWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM----VKSFEVSEVPVRAAKFIARK--NWIVTGSDDMQIRVF   82 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee----eeeeeecccchhhheeeecc--ceEEEecCCceEEEE
Confidence            5668999999986  478999999999999999999888    88899888889999998888  899999999999999


Q ss_pred             eCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe-EEEEEeccCCCcEEEEEEecCCCCEEEEEcC
Q 003579          167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (809)
Q Consensus       167 d~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~  245 (809)
                      |..+++.++.|..|..-|.|++.+|...++++++.|-+|++||.+..- +.++|.+| ..-|.+++|.|.....+|+++-
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccceeeeec
Confidence            999999999999999999999999999999999999999999998664 55666654 8899999999988879999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccceEEEEEecCC--CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEe
Q 003579          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE--PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (809)
Q Consensus       246 dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (809)
                      |++|++|.+.+..+..++. +|..+|+++.|.+.|  ++|++|+.|.++++||+.+.    .+++++.||...|..+.|+
T Consensus       162 DrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fh  236 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFH  236 (794)
T ss_pred             cccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEec
Confidence            9999999999999999999 999999999999855  69999999999999999887    6888999999999999999


Q ss_pred             cCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEE
Q 003579          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (809)
Q Consensus       324 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (809)
                      |.-..+++|+.||++++|...+-+....+..+.                 ..+=++...     ...+.++.+.+.+.+.
T Consensus       237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl-----------------eRvW~I~~~-----k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL-----------------ERVWCIAAH-----KGDGKIAVGFDEGSVT  294 (794)
T ss_pred             CCCcEEEEecCCccEEEecCcceehhhhhhcCC-----------------ceEEEEeec-----CCCCeEEEeccCCcEE
Confidence            999999999999999999987765554443210                 000000000     0000111111111111


Q ss_pred             EEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccc-----ccccCccccEE
Q 003579          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVV  478 (809)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~  478 (809)
                      +             ..    ......+.+++.|+.+.+....  |.--++.+-.......+...     ..+-.-.-...
T Consensus       295 v-------------~l----greeP~vsMd~~gKIiwa~~~e--i~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq  355 (794)
T KOG0276|consen  295 V-------------KL----GREEPAVSMDSNGKIIWAVHSE--IQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQ  355 (794)
T ss_pred             E-------------Ec----cCCCCceeecCCccEEEEcCce--eeeeeceeccCcccccCCccccchhhhccccccchH
Confidence            0             00    0122334445555444433221  22222211111100000000     00001111234


Q ss_pred             EEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCC
Q 003579          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD  558 (809)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~  558 (809)
                      .++.+|+|+.++.|+ ||.-.||..-.    .+-+.-+.-....|.+|.+..|+--.++.|.++  +..+..+.+...-.
T Consensus       356 ~L~hsPNGrfV~Vcg-dGEyiIyTala----~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~  428 (794)
T KOG0276|consen  356 TLAHSPNGRFVVVCG-DGEYIIYTALA----LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS  428 (794)
T ss_pred             HhccCCCCcEEEEec-CccEEEEEeee----hhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc
Confidence            567789998776665 57777775211    111222556778899998888888888999988  55665555542211


Q ss_pred             CeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       559 ~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                          ..+--.|.+|...+ ++.+++||-.++++++.+...  ...+.|+.+|.+++.++.++-.|.-++
T Consensus       429 ----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~--~k~v~w~d~g~lVai~~d~Sfyil~~n  490 (794)
T KOG0276|consen  429 ----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEVT--SKHVYWSDNGELVAIAGDDSFYILKFN  490 (794)
T ss_pred             ----eeeecCCceEEEEe-CCeEEEEEcccceEEEEEeec--cceeEEecCCCEEEEEecCceeEEEec
Confidence                11112344555555 566999999999999988653  458999999999999998873333333

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.7e-38  Score=290.33  Aligned_cols=290  Identities=18%  Similarity=0.318  Sum_probs=262.2

Q ss_pred             eeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (809)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd  209 (809)
                      .++++.|..-+..+-|+++.  ++|++++.||.+.|||.-+...++.++-....|..++|+|.|+++|.|+-|+...||+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Ds--r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDS--RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEEecccccceeeeEecCCc--CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            36677788888888899999  8999999999999999999999999998899999999999999999999999999999


Q ss_pred             eeCC--e---EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-CCCEE
Q 003579          210 VRYD--E---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL  283 (809)
Q Consensus       210 ~~~~--~---~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l  283 (809)
                      +.+.  +   .+.....+|.+.+.|+.|.+|+.  |++++.|.+..+||+++++.+..+. +|.+.|.++.++| +++.+
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeE
Confidence            9865  2   23333344589999999999875  8899999999999999999999999 9999999999999 89999


Q ss_pred             EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (809)
Q Consensus       284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  363 (809)
                      ++|+-|++.++||++.+    ...+.+.||...|++++|.|+|.-+++|+.|++.++||++.+++...++..        
T Consensus       203 vSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~--------  270 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD--------  270 (343)
T ss_pred             EecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC--------
Confidence            99999999999998876    688899999999999999999999999999999999999988766554321        


Q ss_pred             ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (809)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~  443 (809)
                                                                                ....+|++++||..|++|+.|+
T Consensus       271 ----------------------------------------------------------~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  271 ----------------------------------------------------------SIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             ----------------------------------------------------------cccCCceeEEEcccccEEEeee
Confidence                                                                      1227899999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (809)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  502 (809)
                      .|..+.+||.-.++....+.        +|...|+++..+|||..+++++.|..++||.
T Consensus       293 ~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  293 DDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCceeEeeccccceEEEee--------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999998886        9999999999999999999999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.2e-38  Score=306.35  Aligned_cols=326  Identities=23%  Similarity=0.380  Sum_probs=278.8

Q ss_pred             EcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCe----EEEEEe---------ccCCCcEEEEEEecCCCCEEEE
Q 003579          177 FKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDE----ELVTFT---------HSMRGAVTALAFSSDGQPLLAS  242 (809)
Q Consensus       177 ~~~~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~----~~~~~~---------~~~~~~V~~l~fs~dg~~~las  242 (809)
                      ...|..+|.+++|+|-.+ .+++|+.|-..++|++....    ....++         ......|++++|+.+|. +||+
T Consensus       174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~Lat  252 (524)
T KOG0273|consen  174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLAT  252 (524)
T ss_pred             eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEE
Confidence            334999999999999877 99999999999999997411    111111         11135799999999999 9999


Q ss_pred             EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEE
Q 003579          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (809)
Q Consensus       243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (809)
                      |+.||.+++|+. .|.++.++. .|.++|.++.|+..|.+|++++.|+++.+||...+    .....+.-|..+-..+.|
T Consensus       253 G~~~G~~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g----~~~q~f~~~s~~~lDVdW  326 (524)
T KOG0273|consen  253 GSEDGEARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG----TVKQQFEFHSAPALDVDW  326 (524)
T ss_pred             eecCcEEEEEec-Cchhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc----eEEEeeeeccCCccceEE
Confidence            999999999996 566666776 79999999999999999999999999999987665    455666678888777888


Q ss_pred             ecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceE
Q 003579          323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (809)
Q Consensus       323 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (809)
                      -.+. .+++++.|+.|+++.+....+.                                                     
T Consensus       327 ~~~~-~F~ts~td~~i~V~kv~~~~P~-----------------------------------------------------  352 (524)
T KOG0273|consen  327 QSND-EFATSSTDGCIHVCKVGEDRPV-----------------------------------------------------  352 (524)
T ss_pred             ecCc-eEeecCCCceEEEEEecCCCcc-----------------------------------------------------
Confidence            7544 6788888888888876443222                                                     


Q ss_pred             EEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEE
Q 003579          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC  482 (809)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  482 (809)
                                                                               .++        .+|.++|.++.|
T Consensus       353 ---------------------------------------------------------~t~--------~GH~g~V~alk~  367 (524)
T KOG0273|consen  353 ---------------------------------------------------------KTF--------IGHHGEVNALKW  367 (524)
T ss_pred             ---------------------------------------------------------eee--------ecccCceEEEEE
Confidence                                                                     222        289999999999


Q ss_pred             cCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCC---------CEEEEEeCCCeEEEEEcCCCeEEEE
Q 003579          483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN---------GLLATVADDLVIRLFDVVALRMVRK  552 (809)
Q Consensus       483 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~---------~~la~~~~d~~I~v~d~~~~~~~~~  552 (809)
                      +|.+.+|++|+.|++++||+.........+..+ ..|..+.|+|.|         ..+++++.|++|++||+..+.++..
T Consensus       368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~  447 (524)
T KOG0273|consen  368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT  447 (524)
T ss_pred             CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence            999999999999999999999888888877666 689999999965         4899999999999999999999999


Q ss_pred             EecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       553 ~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      |..|..+|.+++|||+|+|+++|+.||.|.+|+.+++++.+.+.....|..++|+.+|++|..+-.|+ .+++-|++
T Consensus       448 f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~-~vcvldlr  523 (524)
T KOG0273|consen  448 LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG-SVCVLDLR  523 (524)
T ss_pred             eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC-CceEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 58887765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.1e-38  Score=281.02  Aligned_cols=291  Identities=14%  Similarity=0.318  Sum_probs=255.4

Q ss_pred             CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579          237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (809)
Q Consensus       237 ~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (809)
                      .-+|++++.|.+|++|...+|.+..+++ ...+.|+.+...|+++.|++++. ..||+||+++.+.  .++..+.+|...
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHTKN   85 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--CceeEEeccCCc
Confidence            3489999999999999999999999998 55788999999999999998875 5799999887654  468888999999


Q ss_pred             CeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579          317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (809)
Q Consensus       317 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (809)
                      |+.+.|..+|+++++||+||++++||++.....+.+                                            
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--------------------------------------------  121 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--------------------------------------------  121 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--------------------------------------------
Confidence            999999999999999999999999999875544433                                            


Q ss_pred             cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcccc
Q 003579          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE  476 (809)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~  476 (809)
                                               .+..+|+++.+.|+...|++|..+|.|++||+........+.       +.....
T Consensus       122 -------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-------Pe~~~~  169 (311)
T KOG0315|consen  122 -------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-------PEDDTS  169 (311)
T ss_pred             -------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-------CCCCcc
Confidence                                     234899999999999999999999999999999887776664       355678


Q ss_pred             EEEEEEcCCCCEEEEEeCcCeEEEEECCCCce------eeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-e
Q 003579          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDL------KSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-R  548 (809)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-~  548 (809)
                      |.++++.|+|.+++.+...|..++|++-+.+.      +..++.+ ..+..+.+|||+++||+++.|.+++||+.++. +
T Consensus       170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence            99999999999999999999999999876543      3344433 78999999999999999999999999999988 7


Q ss_pred             EEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCc-ceEEEEEc
Q 003579          549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLS  607 (809)
Q Consensus       549 ~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~-~v~~l~~s  607 (809)
                      ....+.+|...+.+.+||.||+||+||+.|+++|+||+..++.+..+.+|. +..+++..
T Consensus       250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            788899999999999999999999999999999999999999999987654 46666653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-37  Score=281.64  Aligned_cols=298  Identities=17%  Similarity=0.271  Sum_probs=254.1

Q ss_pred             EEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCcc-ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeE
Q 003579           88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE-NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (809)
Q Consensus        88 ~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i  163 (809)
                      .+++|.+.|+.++.   +.+.|++++.|.++.+|++..... ...+++.+..|..++..+++++++  ++.++++.|+++
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~l   87 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGTL   87 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccceE
Confidence            48999999999996   468899999999999999987643 234578899999999999999999  999999999999


Q ss_pred             EEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccC-CCcEEEEEEecCC-CCEEE
Q 003579          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDG-QPLLA  241 (809)
Q Consensus       164 ~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~V~~l~fs~dg-~~~la  241 (809)
                      ++||+.+|+..+.|.+|...|.+++|+||.+.+++|+.|.+|.+||.. +.+..++..+. .+.|+|+.|+|+. +++++
T Consensus        88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence            999999999999999999999999999999999999999999999987 45555555443 7899999999985 56999


Q ss_pred             EEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEE
Q 003579          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR  321 (809)
Q Consensus       242 sg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~  321 (809)
                      +++.|++|++||+++.++...+. +|.+.++.++++|||.++++|+.||.+.+||++...    .+..+ +|...|.+++
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~lysl-~a~~~v~sl~  240 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLYSL-EAFDIVNSLC  240 (315)
T ss_pred             EccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeEec-cCCCeEeeEE
Confidence            99999999999999999998888 999999999999999999999999999999998773    44444 7889999999


Q ss_pred             EecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCce
Q 003579          322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (809)
Q Consensus       322 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  401 (809)
                      |+|+.-.|+.+ .+.+|++||+.+.....++.......                                          
T Consensus       241 fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~------------------------------------------  277 (315)
T KOG0279|consen  241 FSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP------------------------------------------  277 (315)
T ss_pred             ecCCceeEeec-cCCceEEEeccchhhhhhcccccccc------------------------------------------
Confidence            99987555544 45569999999887776664321100                                          


Q ss_pred             EEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (809)
Q Consensus       402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~  454 (809)
                                       ..........+++|+++|..|+.|..++.|++|.+.
T Consensus       278 -----------------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  278 -----------------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             -----------------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                             000112456788999999999999999999999864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=6.7e-35  Score=287.43  Aligned_cols=507  Identities=16%  Similarity=0.189  Sum_probs=379.6

Q ss_pred             EEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe-----------EEEEECCee--E
Q 003579           20 SVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----------IAVVKRAHQ--V   86 (809)
Q Consensus        20 ~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~-----------i~vw~~~~~--~   86 (809)
                      .+...+...++ +-......+|+.+...+.+. .+|...|.||+++|+...+|+|..           +++||.-+.  +
T Consensus        70 Nly~lptgE~v-yfvA~V~Vl~n~ee~~Qr~y-~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL  147 (626)
T KOG2106|consen   70 NLYLLPTGELV-YFVAAVGVLYNWEERSQRHY-LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTL  147 (626)
T ss_pred             eeEEccCccEE-EEeccEEEEEeehhhhcccc-cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceee
Confidence            33333433333 33345677888877444333 368999999999999999997642           899996543  4


Q ss_pred             EEEccccccEEEEEEe----CCEEEEEeC--CCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC
Q 003579           87 ATWSRHSAKVNLLLLF----GEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE  160 (809)
Q Consensus        87 ~~~~~h~~~V~~l~~~----g~~l~s~~~--dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d  160 (809)
                      +.+..-...|++++|.    |.+|+..+.  +..+.|||.+.+..    ....+.....+..+.|||... |.+++. ..
T Consensus       148 ~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~----~~~vk~sne~v~~a~FHPtd~-nliit~-Gk  221 (626)
T KOG2106|consen  148 HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK----LGPVKTSNEVVFLATFHPTDP-NLIITC-GK  221 (626)
T ss_pred             eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc----cCcceeccceEEEEEeccCCC-cEEEEe-CC
Confidence            4466677789999983    777777654  34599999998877    555566677778888999884 455554 56


Q ss_pred             CeEEEEeCCCCceEEE---EcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC
Q 003579          161 GSLQLWNISTKKKLYE---FKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (809)
Q Consensus       161 g~i~lwd~~~~~~~~~---~~~~-~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg  236 (809)
                      |.+.+|+.+++.+...   |+.+ ..-|.|++|.++|+ +++|.++|.|.||+..+.+..++.. .|.+.|.+++...+|
T Consensus       222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~G  299 (626)
T KOG2106|consen  222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDG  299 (626)
T ss_pred             ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCc
Confidence            8899999998876554   4333 46799999999987 6799999999999998888877777 558999999999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCceeeeeee-cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579          237 QPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (809)
Q Consensus       237 ~~~lasg~~dg~I~iwdl~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (809)
                      .  |++|+.|..|..||- .-+.++... ....++|+.++-...  -|+.|...+.|-.=.++..     ......+|..
T Consensus       300 t--llSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~~~~-----f~~~v~gh~d  369 (626)
T KOG2106|consen  300 T--LLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKG--DILVGTTRNFILQGTLENG-----FTLTVQGHGD  369 (626)
T ss_pred             c--EeecCccceEEeccc-cccccccccCchhcCCeeEEecCCC--cEEEeeccceEEEeeecCC-----ceEEEEeccc
Confidence            7  566999999999993 322222222 234567777764333  3666766666655444433     2333458999


Q ss_pred             CCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEe
Q 003579          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  395 (809)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  395 (809)
                      ....++.+|+...+++++.|+.+++|+  ..+..                                              
T Consensus       370 elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~----------------------------------------------  401 (626)
T KOG2106|consen  370 ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE----------------------------------------------  401 (626)
T ss_pred             ceeeEEcCCChhheeeccCcceEEEcc--CCcee----------------------------------------------
Confidence            999999999999999999999999998  11111                                              


Q ss_pred             ecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccc
Q 003579          396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (809)
Q Consensus       396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (809)
                               |+.              ....++.|+.|.|.| .+++|+..|...+.|..+...+..-.        . +.
T Consensus       402 ---------wt~--------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--------d-~~  448 (626)
T KOG2106|consen  402 ---------WTK--------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--------D-NE  448 (626)
T ss_pred             ---------EEE--------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--------c-CC
Confidence                     110              012788999999999 99999999999999999966655443        3 78


Q ss_pred             cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeee--e-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 003579          476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--E-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  552 (809)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~-~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~  552 (809)
                      +++.+.++|+|.++|.|+.|+.|++|.+.........  . ..++|+.+.|++|++++.+.+.|-.|..|.....+.+..
T Consensus       449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts  528 (626)
T KOG2106|consen  449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS  528 (626)
T ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence            9999999999999999999999999998755433222  1 228999999999999999999999999994432221111


Q ss_pred             --------------E----ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEE---eeeCcc-eEEEEEcCCC
Q 003579          553 --------------F----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA---IHVDVS-ITALSLSPNM  610 (809)
Q Consensus       553 --------------~----~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~---~~~~~~-v~~l~~spdg  610 (809)
                                    |    ..|...|+.++-+.+.+.+++|...|.|++|..+-.+....   +..|+. |++++|+-+.
T Consensus       529 ~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d  608 (626)
T KOG2106|consen  529 VKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD  608 (626)
T ss_pred             ecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC
Confidence                          1    13556788888899999999999999999999886554433   334544 9999999998


Q ss_pred             CeEEEEEeCCCeEEEeec
Q 003579          611 DVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       611 ~~lat~~~d~~~i~lW~~  628 (809)
                      ..|.+.+.|. +|..|++
T Consensus       609 ~~li~tg~D~-Si~qW~l  625 (626)
T KOG2106|consen  609 SHLISTGKDT-SIMQWRL  625 (626)
T ss_pred             ceEEecCCCc-eEEEEEe
Confidence            9999988777 7999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.1e-37  Score=276.18  Aligned_cols=295  Identities=17%  Similarity=0.259  Sum_probs=254.7

Q ss_pred             CEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce--eeeeeecccccce
Q 003579          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAI  271 (809)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~--~~~~~~~~h~~~V  271 (809)
                      -+|++++.|.+|++|...+|.+..++.+. .+.|..+...||++ .||+++ ...|++||++++.  .+.++. +|...|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~-dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S~np~Pv~t~e-~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHP-DSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNSNNPNPVATFE-GHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecC-ccceeeEEEcCCcc-hhhhcc-CCeeEEEEccCCCCCceeEEe-ccCCce
Confidence            47899999999999999999999999876 88999999999999 777777 4689999999885  577777 999999


Q ss_pred             EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccccee
Q 003579          272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (809)
Q Consensus       272 ~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  351 (809)
                      .++.|..+|+.+++||.||++||||++...    +.+. ..|..+|+++..+|+...|++|.++|.|++||+.......+
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~----~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~  161 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLS----CQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE  161 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcc----cchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence            999999999999999999999999998742    2232 36779999999999999999999999999999987765554


Q ss_pred             cchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE
Q 003579          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (809)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~  431 (809)
                      +..                                                                   +....+.+++
T Consensus       162 liP-------------------------------------------------------------------e~~~~i~sl~  174 (311)
T KOG0315|consen  162 LIP-------------------------------------------------------------------EDDTSIQSLT  174 (311)
T ss_pred             cCC-------------------------------------------------------------------CCCcceeeEE
Confidence            322                                                                   2237899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-ceee
Q 003579          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS  510 (809)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~  510 (809)
                      +.|||.+++.+...|..++|++-.......+...  ....+|++.+....++|++++|++++.|.+++||+.++. +...
T Consensus       175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~--~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~  252 (311)
T KOG0315|consen  175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV--HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL  252 (311)
T ss_pred             EcCCCcEEEEecCCccEEEEEccCCCccccceEh--hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence            9999999999999999999999886554444322  224589999999999999999999999999999999987 4444


Q ss_pred             eeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEEC
Q 003579          511 RWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS  566 (809)
Q Consensus       511 ~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fs  566 (809)
                      .++.+ ..+..++||.||.||++|+.|+.+++||+..++.++...||.....+++..
T Consensus       253 ~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  253 VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            55544 689999999999999999999999999999999999999999888887764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-37  Score=279.60  Aligned_cols=291  Identities=20%  Similarity=0.329  Sum_probs=248.3

Q ss_pred             ceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEee-----CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC
Q 003579          172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVR-----YDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~-----~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~  245 (809)
                      .+.-++++|.+.|+.++..+. .+.+.+++.|..+.+|++.     .|..++.+.+| ...|..+..++||+ ++++++.
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH-sH~v~dv~~s~dg~-~alS~sw   83 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH-SHFVSDVVLSSDGN-FALSASW   83 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeecc-ceEecceEEccCCc-eEEeccc
Confidence            345678999999999999886 5789999999999999986     45677888874 88999999999999 8999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC
Q 003579          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (809)
Q Consensus       246 dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (809)
                      |+.+++||+.+++....+. +|...|.+++|++|.+.+++|+.|++|++|+.-..   ........+|.+.|.|++|+|+
T Consensus        84 D~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~---ck~t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV---CKYTIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             cceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeeccc---EEEEEecCCCcCcEEEEEEcCC
Confidence            9999999999999988888 99999999999999999999999999999976543   1223333344889999999996


Q ss_pred             --CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEE
Q 003579          326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (809)
Q Consensus       326 --~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (809)
                        ..+|++++.|+++++||+++.+.                                                       
T Consensus       160 ~~~p~Ivs~s~DktvKvWnl~~~~l-------------------------------------------------------  184 (315)
T KOG0279|consen  160 ESNPIIVSASWDKTVKVWNLRNCQL-------------------------------------------------------  184 (315)
T ss_pred             CCCcEEEEccCCceEEEEccCCcch-------------------------------------------------------
Confidence              77899999999999998765422                                                       


Q ss_pred             EEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEc
Q 003579          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (809)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (809)
                                                                             ...+        .+|.+.++.++++
T Consensus       185 -------------------------------------------------------~~~~--------~gh~~~v~t~~vS  201 (315)
T KOG0279|consen  185 -------------------------------------------------------RTTF--------IGHSGYVNTVTVS  201 (315)
T ss_pred             -------------------------------------------------------hhcc--------ccccccEEEEEEC
Confidence                                                                   1112        3899999999999


Q ss_pred             CCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec----C---
Q 003579          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG----H---  556 (809)
Q Consensus       484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~----h---  556 (809)
                      |||.++++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|+.+ .+..|+|||++++.++..+.-    .   
T Consensus       202 pDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~  280 (315)
T KOG0279|consen  202 PDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSK  280 (315)
T ss_pred             CCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccc
Confidence            99999999999999999999999999999999999999999976655555 456699999999988776652    2   


Q ss_pred             --CCCeeeEEECCCCCEEEEEeCCCeEEEEEcC
Q 003579          557 --TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       557 --~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~  587 (809)
                        .-...+++||+||..|++|-.|+.|++|.+.
T Consensus       281 ~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  281 AGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence              2235678999999999999999999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=8.6e-36  Score=304.89  Aligned_cols=496  Identities=19%  Similarity=0.275  Sum_probs=359.8

Q ss_pred             CcEEEEEeCCeEEEEECCe--EEEEECCee-E-EEEccccccEEEEEE--eCC---EEEEEeCCCcEEEEEcCCCccccc
Q 003579           58 KIRALASYRDYTFAAYGNH--IAVVKRAHQ-V-ATWSRHSAKVNLLLL--FGE---HILSIDIDGNMFIWAFKGIEENLA  128 (809)
Q Consensus        58 ~I~~la~~~~~~~~a~g~~--i~vw~~~~~-~-~~~~~h~~~V~~l~~--~g~---~l~s~~~dg~i~vWd~~~~~~~~~  128 (809)
                      ++.+++-..-+..+|+|..  |.+||..+. + ..+.||.++|+|+.+  ..+   ++++|+.||.|++|.+.....  .
T Consensus        15 R~~~v~sw~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~--~   92 (764)
T KOG1063|consen   15 RVPKVSSWGPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL--I   92 (764)
T ss_pred             cccccccccccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe--E
Confidence            4555544444555666554  999998776 3 339999999999997  333   899999999999999983332  2


Q ss_pred             eeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEcCCCCC--EEEEEEcCCCC--EEEEEeCC
Q 003579          129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSS--ISSCVSSPALD--VVAVGCSD  202 (809)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~--~~~~~~~~~~~--I~~l~~sp~~~--~la~g~~d  202 (809)
                      .+.+++++..  ...+++...  ..+.+.+.++.+.+||.+..+  +...+.-..+.  -.|+++.|+.+  ++|.|+.+
T Consensus        93 ~i~~~~g~~~--~~~cv~a~~--~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~  168 (764)
T KOG1063|consen   93 KIYTIQGHCK--ECVCVVARS--SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSK  168 (764)
T ss_pred             EEEeecCcce--eEEEEEeee--eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcc
Confidence            3444544222  233333322  223333689999999986555  23333222222  24556666332  56677778


Q ss_pred             CeEEEEEeeCC--eEEEEEeccCCCcEEEEEEecCC--CCEEEEEcCCCcEEEEECCCce--------------------
Q 003579          203 GKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSDG--QPLLASGASSGVISIWNLEKRR--------------------  258 (809)
Q Consensus       203 g~i~iwd~~~~--~~~~~~~~~~~~~V~~l~fs~dg--~~~lasg~~dg~I~iwdl~~~~--------------------  258 (809)
                      ..|.++.-..+  +.+..+.+| .+.|.+++|...+  ..+||+++.|..|+||.+.-+.                    
T Consensus       169 ~~v~~~s~~~d~f~~v~el~GH-~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f  247 (764)
T KOG1063|consen  169 FVVDLYSSSADSFARVAELEGH-TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF  247 (764)
T ss_pred             eEEEEeccCCcceeEEEEeecc-chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee
Confidence            88888876644  345566665 8999999998654  4688999999999999764322                    


Q ss_pred             -ee---e------eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEec---cCCCCCCeeEEEecC
Q 003579          259 -LQ---S------VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR---SGHSAPPLCIRFYAN  325 (809)
Q Consensus       259 -~~---~------~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~---~~h~~~v~~i~~~~~  325 (809)
                       ..   .      .+..+|.+.|.++.|.|.+..|++++.|+++.+|.-+..++.+.....+   .|.........|+|+
T Consensus       248 ~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n  327 (764)
T KOG1063|consen  248 MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN  327 (764)
T ss_pred             eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC
Confidence             01   0      1114899999999999999999999999999999887776665443322   344556889999999


Q ss_pred             CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (809)
Q Consensus       326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (809)
                      +..+++-+.-|..++|.......                                                        |
T Consensus       328 ~~~ii~~g~~Gg~hlWkt~d~~~--------------------------------------------------------w  351 (764)
T KOG1063|consen  328 SNVIIAHGRTGGFHLWKTKDKTF--------------------------------------------------------W  351 (764)
T ss_pred             CCEEEEecccCcEEEEeccCccc--------------------------------------------------------e
Confidence            99999999999999998322111                                                        1


Q ss_pred             EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (809)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (809)
                               .......+|...|+.++|+|.|.|+++.+.|-+-++|-.- |.... ...  .....-|...++|+++-+.
T Consensus       352 ---------~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~-wHE--iaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  352 ---------TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQE-WHE--IARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             ---------eeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccc-eee--ecccccccccceeeehccC
Confidence                     1122334778999999999999999999999999998765 22111 110  0112478889999999886


Q ss_pred             CCEEEEEeCcCeEEEEECCCC--------------------------------c--------------------------
Q 003579          486 NTLMISAGYHGDIKVWDFKGR--------------------------------D--------------------------  507 (809)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~--------------------------------~--------------------------  507 (809)
                      .-.+++|.....+|+|+....                                +                          
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            777889999999999975321                                0                          


Q ss_pred             -------------------eeeeeecCCCeEEEEEeeCCCEEEEEeCC-----CeEEEEEcCCCeEEEEEecCCCCeeeE
Q 003579          508 -------------------LKSRWEVGCSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKFEGHTDRITDF  563 (809)
Q Consensus       508 -------------------~~~~~~~~~~i~~~~~s~~~~~la~~~~d-----~~I~v~d~~~~~~~~~~~~h~~~I~~l  563 (809)
                                         ..+.+.+...|.+++.+|+++++|+++..     ..|++|+..+...+..+.+|.-.|+.|
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL  578 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence                               00111134679999999999999999874     479999999999999999999999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCccE----EEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579          564 CFSEDGKWLLSSGMDGSLRIWDVILARQ----IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (809)
Q Consensus       564 ~fspdg~~l~s~s~D~~I~vwd~~~~~~----i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (809)
                      +|||||++|+++|.|+++.+|....+..    .+..+.|.. |.+..|+|++.++||++.|. .|.+|....
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK-~VkVW~~~~  649 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK-KVKVWEEPD  649 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc-eEEEEeccC
Confidence            9999999999999999999998854322    223445555 99999999999999999999 699998753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.6e-36  Score=292.62  Aligned_cols=341  Identities=16%  Similarity=0.244  Sum_probs=287.3

Q ss_pred             eEEEEccccccEEEEEEe---CCEEEEEeCCCcEEEEEcCCCccccce---eee-E------EcCCccccEEEEeCCCCC
Q 003579           85 QVATWSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAP---VGH-V------KLDDKFTPTCIMHPDTYL  151 (809)
Q Consensus        85 ~~~~~~~h~~~V~~l~~~---g~~l~s~~~dg~i~vWd~~~~~~~~~~---~~~-~------~~~~~~~~~~~~~p~~~~  151 (809)
                      ......+|+.+|.+.+|.   ...|++++.|.+.++|++....-....   ++. +      ......+.++.|+.++  
T Consensus       170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G--  247 (524)
T KOG0273|consen  170 SKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG--  247 (524)
T ss_pred             cceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC--
Confidence            344444599999999984   347899999999999999751110000   000 0      1123456678899999  


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~  231 (809)
                      +.|++|+.+|.+++|+. +|.++.++..|.++|.++.|+..|.+|++++.||++.+||..+++....+..+ ..+-..+.
T Consensus       248 ~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~-s~~~lDVd  325 (524)
T KOG0273|consen  248 TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH-SAPALDVD  325 (524)
T ss_pred             CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec-cCCccceE
Confidence            88999999999999995 88999999999999999999999999999999999999999999999998876 56667889


Q ss_pred             EecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEecc
Q 003579          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS  311 (809)
Q Consensus       232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~  311 (809)
                      |..+..  +++++.||.|+++.+...+++.++. +|.+.|.++.|.|.+.+|++++.|+++++|.....    .....+.
T Consensus       326 W~~~~~--F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----~~~~~l~  398 (524)
T KOG0273|consen  326 WQSNDE--FATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----NSVHDLQ  398 (524)
T ss_pred             EecCce--EeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCC----cchhhhh
Confidence            988775  8899999999999999999999999 79999999999999999999999999999976544    4566778


Q ss_pred             CCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccce
Q 003579          312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (809)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  391 (809)
                      +|...|..+.|+|+|.. ....                                                          
T Consensus       399 ~Hskei~t~~wsp~g~v-~~n~----------------------------------------------------------  419 (524)
T KOG0273|consen  399 AHSKEIYTIKWSPTGPV-TSNP----------------------------------------------------------  419 (524)
T ss_pred             hhccceeeEeecCCCCc-cCCC----------------------------------------------------------
Confidence            99999999999997631 0000                                                          


Q ss_pred             eEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccccc
Q 003579          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (809)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (809)
                                                                ..+..++.++.|++|++||+..|..+..+.        
T Consensus       420 ------------------------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~--------  449 (524)
T KOG0273|consen  420 ------------------------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLM--------  449 (524)
T ss_pred             ------------------------------------------cCCceEEEeecCCeEEEEEccCCceeEeec--------
Confidence                                                      023455666677777788888887777775        


Q ss_pred             CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (809)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~  545 (809)
                      .|..+|.+++|+|+++++++|+.||.|.+|+.+++++.+.+...+.|..++|+.+|.+|.++..|+.+++.|++
T Consensus       450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=294.57  Aligned_cols=541  Identities=16%  Similarity=0.218  Sum_probs=399.6

Q ss_pred             eeeeEecCCcceEEEE-cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEE-CCeEEEEECCee
Q 003579            8 KAIGYITSSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNHIAVVKRAHQ   85 (809)
Q Consensus         8 r~~g~vs~~v~~~~~~-~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~i~vw~~~~~   85 (809)
                      +.|+. +...|-.+.. .....++.+..++.|.+|--.+ ........|...|.-+..-.+...+.. .+.+.||+....
T Consensus        67 ~ll~v-s~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk-~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~  144 (910)
T KOG1539|consen   67 NLLFV-SKPLPDKITALASDKDYVYVASGNKIYAYARGK-HIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSI  144 (910)
T ss_pred             EEEEe-cCCCCCceEEEEecCceEEEecCcEEEEEEccc-eEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccc
Confidence            34443 5555544433 2344555566678888875332 445555567789998887777766655 444999986441


Q ss_pred             -E--E---E-EccccccEEEEE-E--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEE
Q 003579           86 -V--A---T-WSRHSAKVNLLL-L--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVI  155 (809)
Q Consensus        86 -~--~---~-~~~h~~~V~~l~-~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~  155 (809)
                       .  .   . +.....-|+++. |  .=+.++.|+.+|.+++|++.+++.    +.+++.....+.  ++-+..-+..++
T Consensus       145 ~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT--~ieqsPaLDVVa  218 (910)
T KOG1539|consen  145 QEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRIT--AIEQSPALDVVA  218 (910)
T ss_pred             cccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcE----EEEeccccccee--EeccCCcceEEE
Confidence             1  1   1 222222377776 3  246688889999999999999998    777766554443  344444458999


Q ss_pred             EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEec
Q 003579          156 VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS  234 (809)
Q Consensus       156 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~  234 (809)
                      +|..+|+|.++|++.++.+.+|+...++|++++|..||. .+|+|+..|.+.+||++..+.+......|.+.|..+.|.+
T Consensus       219 iG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~  298 (910)
T KOG1539|consen  219 IGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP  298 (910)
T ss_pred             EeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence            999999999999999999999997679999999999986 6777888899999999998888888877789999999998


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCc----eeeeeeecccccceEEEEEe-cCCCEEEEEcCCCcEEEEEeeCCCCCceeEE-
Q 003579          235 DGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPRLLR-  308 (809)
Q Consensus       235 dg~~~lasg~~dg~I~iwdl~~~----~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~-  308 (809)
                      ... ++++++.|..+++|=.+++    +.++. +.+|..+..++.|. .++..+.+++.|++++.+++-.......+.+ 
T Consensus       299 ~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~  376 (910)
T KOG1539|consen  299 GEP-VLVTAGADNSLKVWVFDSGDGVPRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL  376 (910)
T ss_pred             CCc-eEeeccCCCceeEEEeeCCCCcchheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence            666 9999999999988855543    34443 35999999999998 6788999999999999886643211111111 


Q ss_pred             -------------eccCCCCCCeeEEEec-----CCCEEEEEECCCCEEEEEeeecccce-ecchhhHHHHHhhccchhh
Q 003579          309 -------------FRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEE  369 (809)
Q Consensus       309 -------------~~~~h~~~v~~i~~~~-----~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~  369 (809)
                                   ...-.-.+|..+++..     ..+.++..-.+..++.|+.++...-. .+...              
T Consensus       377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~--------------  442 (910)
T KOG1539|consen  377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK--------------  442 (910)
T ss_pred             ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc--------------
Confidence                         0011124666666654     23355555667889999987654421 11110              


Q ss_pred             hhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003579          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (809)
Q Consensus       370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~  449 (809)
                      ..+-..+.+.+++..   .-.+.+..+...+.+..|+++.+... ..+.....|..+|+.++...-++.+++++.+|.+.
T Consensus       443 ~~~~~~~~~~av~vs---~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk  518 (910)
T KOG1539|consen  443 RFKKDDINATAVCVS---FCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK  518 (910)
T ss_pred             cccccCcceEEEEEe---ccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence            000011111111111   11245667778899999999987663 33333456789999999999999999999999999


Q ss_pred             EEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec-CCCeEEEEEeeCCC
Q 003579          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNG  528 (809)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~  528 (809)
                      +||.........+.         -...+.++..+.....++.+..|-.|+++|..+.+.++.+.. ...|+.++|||||+
T Consensus       519 fw~f~~k~l~~~l~---------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  519 FWDFKKKVLKKSLR---------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             EEecCCcceeeeec---------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            99999988777663         456788888888888999999999999999999999999984 58999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCC-CeEEEEEc
Q 003579          529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDV  586 (809)
Q Consensus       529 ~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D-~~I~vwd~  586 (809)
                      +|++++.|++|++||+.++.++-.+. -..+++++.|||+|.+|||+..| .-|++|-=
T Consensus       590 WlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             EEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            99999999999999999999988775 56789999999999999999988 56999963

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-36  Score=287.81  Aligned_cols=303  Identities=23%  Similarity=0.376  Sum_probs=267.3

Q ss_pred             CCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579          170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (809)
Q Consensus       170 ~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I  249 (809)
                      ...+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+++| ...+.+++|+..|+ +||+++.|=.+
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-t~sv~di~~~a~Gk-~l~tcSsDl~~  174 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-TDSVFDISFDASGK-YLATCSSDLSA  174 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-ccceeEEEEecCcc-EEEecCCccch
Confidence            34566778899999999999999999999999999999999999998888887 66699999999999 99999999889


Q ss_pred             EEEECCC-ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579          250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (809)
Q Consensus       250 ~iwdl~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (809)
                      .+||.++ .+++..+. +|...|.+++|.|.|.++++++.|++|+.|+++++    -++..+.+|...|..++.+.||..
T Consensus       175 ~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----~cv~t~~~h~ewvr~v~v~~DGti  249 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----YCVKTFPGHSEWVRMVRVNQDGTI  249 (406)
T ss_pred             hheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecccccceeEEecccc----eeEEeccCchHhEEEEEecCCeeE
Confidence            9999987 46666666 89999999999999999999999999999999987    688999999999999999999999


Q ss_pred             EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (809)
Q Consensus       329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (809)
                      +++++.|.++++|-+.+.++..++                                                        
T Consensus       250 ~As~s~dqtl~vW~~~t~~~k~~l--------------------------------------------------------  273 (406)
T KOG0295|consen  250 IASCSNDQTLRVWVVATKQCKAEL--------------------------------------------------------  273 (406)
T ss_pred             EEecCCCceEEEEEeccchhhhhh--------------------------------------------------------
Confidence            999999999999988665433221                                                        


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (809)
                                                                                    ..|..+|.+++|.|...+
T Consensus       274 --------------------------------------------------------------R~hEh~vEci~wap~~~~  291 (406)
T KOG0295|consen  274 --------------------------------------------------------------REHEHPVECIAWAPESSY  291 (406)
T ss_pred             --------------------------------------------------------------hccccceEEEEecccccC
Confidence                                                                          267788888888776431


Q ss_pred             E----EEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEE
Q 003579          489 M----ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC  564 (809)
Q Consensus       489 l----~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~  564 (809)
                      =    ++++.+                              .+.++.+++.|++|++||+.++.++.++.||.+.|.+++
T Consensus       292 ~~i~~at~~~~------------------------------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a  341 (406)
T KOG0295|consen  292 PSISEATGSTN------------------------------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA  341 (406)
T ss_pred             cchhhccCCCC------------------------------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence            1    111111                              367899999999999999999999999999999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       565 fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                      |+|.|+||+++..|+++++||+.++++...+..|.. |+++.|+.+-.|++||+.|. .+++|.-
T Consensus       342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq-t~KvwEc  405 (406)
T KOG0295|consen  342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWEC  405 (406)
T ss_pred             EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc-eeeeeec
Confidence            999999999999999999999999999999987766 99999999999999999999 6999964

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.6e-33  Score=283.69  Aligned_cols=530  Identities=16%  Similarity=0.187  Sum_probs=391.3

Q ss_pred             CCCCCcEEEEEeCCeEEEEECCe---EEEEECCee---EEEEccc-cccEEEEEEe-CCEEEEEeCCCcEEEEEcCCCcc
Q 003579           54 QLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ---VATWSRH-SAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEE  125 (809)
Q Consensus        54 ~~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~~---~~~~~~h-~~~V~~l~~~-g~~l~s~~~dg~i~vWd~~~~~~  125 (809)
                      -.|..|+|||++.+..-+|.+..   |.+|+...-   ...+.|+ ...|.+++|. |..|.|.+.+|.|.-||+.+.+.
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence            46899999999988666666543   999986432   3335555 5589999995 99999999999999999999887


Q ss_pred             ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEE--EcCCCCCEEEEEEcCCCCEEEEEeCCC
Q 003579          126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSDG  203 (809)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~--~~~~~~~I~~l~~sp~~~~la~g~~dg  203 (809)
                          ...+....+.+++++.+|.+  ..+++|+.||.+..+++..++..+.  |....+.|.++.|+|++..|+.|+.||
T Consensus       103 ----~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen  103 ----KYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG  176 (691)
T ss_pred             ----eEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence                67777788889999999999  8999999999888888888887765  444568999999999999999999999


Q ss_pred             eEEEEEeeCCeEEEEEe-------ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEE
Q 003579          204 KIHVHNVRYDEELVTFT-------HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF  276 (809)
Q Consensus       204 ~i~iwd~~~~~~~~~~~-------~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~  276 (809)
                      .|++||..++..++...       .....-|.++.|..++.  +++|...|+|.+||...+.++.... .|.+.|.+++.
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav  253 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST--IASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAV  253 (691)
T ss_pred             eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc--EEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEE
Confidence            99999999998877332       21234688999998885  8999999999999999999999998 89999999999


Q ss_pred             ecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhh
Q 003579          277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH  356 (809)
Q Consensus       277 ~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  356 (809)
                      .+++.+++++|.|+.|..+.......++.....+..|...+.+++..++  .+++|+.|..+.+-..+........ +..
T Consensus       254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~-~~~  330 (691)
T KOG2048|consen  254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHR-QKN  330 (691)
T ss_pred             cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhh-ccc
Confidence            9999999999999999999877766555566677899999999999977  8999999999888766542211111 000


Q ss_pred             HHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecC--------CceEEEEEeeeeee-----cceeeecCCCC
Q 003579          357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD--------TAQAYVWRLQNFVL-----GEHILRPCPEN  423 (809)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~w~~~~~~~-----~~~~~~~~~~~  423 (809)
                                     .++              ...++.+...        ...+.+|.+.....     ..+.+......
T Consensus       331 ---------------~~p--------------~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~  381 (691)
T KOG2048|consen  331 ---------------LFP--------------ASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE  381 (691)
T ss_pred             ---------------ccc--------------ccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCC
Confidence                           000              0011222222        23333444433211     12334444445


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe-CcCeEEEEE
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWD  502 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd  502 (809)
                      ...+.+.++||||++++.++-. ..++|.++..........   .......-....+.|+-++..++.++ .+..+...+
T Consensus       382 ~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v---~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~e  457 (691)
T KOG2048|consen  382 KENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV---DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFE  457 (691)
T ss_pred             ccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEe---ccchhhhccceeeEEEecCceEEEEecccceeEEEE
Confidence            6789999999999999998754 467777766432221110   01123334567788888887777777 778888888


Q ss_pred             CCCCceeeee--e---cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC-CCCEEEEEe
Q 003579          503 FKGRDLKSRW--E---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSG  576 (809)
Q Consensus       503 ~~~~~~~~~~--~---~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg~~l~s~s  576 (809)
                      +.+.......  .   .-..|+.++.+++|+++|+.+..|.|.+|++++++.......-...|+.++|+| +-..|+.+.
T Consensus       458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvat  537 (691)
T KOG2048|consen  458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVAT  537 (691)
T ss_pred             ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEe
Confidence            7765433322  2   226899999999999999999999999999999876554434457899999996 456788888


Q ss_pred             CCCeEEEEEcCCccEEEEee------------eCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          577 MDGSLRIWDVILARQIDAIH------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       577 ~D~~I~vwd~~~~~~i~~~~------------~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      .|+.|.-||++..++-+...            ....+..+.|+|........+... -+++-+..
T Consensus       538 s~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~-w~~~id~~  601 (691)
T KOG2048|consen  538 SNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAH-WSCLIDFS  601 (691)
T ss_pred             cCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCc-EEEEEecC
Confidence            89999999996443222111            123488888988776655555544 36666644

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.4e-34  Score=286.16  Aligned_cols=463  Identities=14%  Similarity=0.206  Sum_probs=342.9

Q ss_pred             CCCCCCcEEEEEeCCeEEEEE---CCeEEEEECCee--EEEEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCcc
Q 003579           53 PQLPKKIRALASYRDYTFAAY---GNHIAVVKRAHQ--VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEE  125 (809)
Q Consensus        53 ~~~~~~I~~la~~~~~~~~a~---g~~i~vw~~~~~--~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~  125 (809)
                      ..+..+|.++.++|..-++-+   .+.|.+|+..++  +..+.-...||.+..|  -.+|+++|+.|..|+|++..+.+.
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek   89 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK   89 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence            347889999999998555433   566999986554  5557777888888877  478999999999999999999999


Q ss_pred             ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-ceEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCC
Q 003579          126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDG  203 (809)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~I~~l~~sp-~~~~la~g~~dg  203 (809)
                          +.+++.|..++.+.+.||..  .+++++|.|-+|++||.+.. .+.++|.||..-|.+++|.| |.+.+|+++-|+
T Consensus        90 ----V~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   90 ----VKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ----eEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence                99999999999999999998  89999999999999999754 78899999999999999999 568999999999


Q ss_pred             eEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC-CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCE
Q 003579          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV  282 (809)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg-~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~  282 (809)
                      +|++|.+.+..+..++.+| ...|.|+.|-+.| +++|++|+.|.+|+|||.++..++.++. +|...|..+.|+|.-++
T Consensus       164 TVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPI  241 (794)
T ss_pred             cEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcE
Confidence            9999999999999999976 7889999998865 5699999999999999999999999999 99999999999999999


Q ss_pred             EEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHh
Q 003579          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (809)
Q Consensus       283 l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  362 (809)
                      +++|+.||++|+|.-.+    .++...+.-.-..+.||+..+.+..++.|...|.+. ..+-.+.+...+....      
T Consensus       242 iisgsEDGTvriWhs~T----y~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd~~g------  310 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKT----YKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMDSNG------  310 (794)
T ss_pred             EEEecCCccEEEecCcc----eehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeecCCc------
Confidence            99999999999995433    255555556667899999999888888888777654 3444433332221100      


Q ss_pred             hccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee-e-cceeeec--C--CCCCCCeEEEEEcCCC
Q 003579          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV-L-GEHILRP--C--PENPTAVKACTISACG  436 (809)
Q Consensus       363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~-~~~~~~~--~--~~~~~~v~~v~~s~~g  436 (809)
                                                 .-+-+.|.+-..+.+-.+.... . ....++.  .  ....-....++-+|+|
T Consensus       311 ---------------------------KIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNG  363 (794)
T KOG0276|consen  311 ---------------------------KIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNG  363 (794)
T ss_pred             ---------------------------cEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCC
Confidence                                       0011111111111111111000 0 0000000  0  0001233457889999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCC
Q 003579          437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC  516 (809)
Q Consensus       437 ~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  516 (809)
                      +++++++ ||.-.+|..-.-+             ..+.+.-....|.++....+.--.++.|+++  ++.+....+....
T Consensus       364 rfV~Vcg-dGEyiIyTala~R-------------nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~  427 (794)
T KOG0276|consen  364 RFVVVCG-DGEYIIYTALALR-------------NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM  427 (794)
T ss_pred             cEEEEec-CccEEEEEeeehh-------------hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc
Confidence            9988875 5666666522111             1344666778899997778888788999988  6666666665543


Q ss_pred             CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      ....  +  -|..|+....++.+++||.++++.++++.-.   ...+.|+.+|.+++.++.|. .++..
T Consensus       428 ~~e~--i--~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S-fyil~  488 (794)
T KOG0276|consen  428 SAEG--I--FGGPLLGVRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS-FYILK  488 (794)
T ss_pred             ceee--e--cCCceEEEEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc-eeEEE
Confidence            3111  1  1444555556778999999999999998743   34688999999988888665 34443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=295.93  Aligned_cols=501  Identities=14%  Similarity=0.172  Sum_probs=363.9

Q ss_pred             CCCCcEEEEEeCCeEEEEEC---CeEEEEE--CCeeEEEEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCcccc
Q 003579           55 LPKKIRALASYRDYTFAAYG---NHIAVVK--RAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENL  127 (809)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~g---~~i~vw~--~~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~  127 (809)
                      -..++..++|+|..-++-++   +.|.+||  .+..+.++.+|.++|..+.|  .+..++||+.|-.|+||++++.++  
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc--   85 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC--   85 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee--
Confidence            35678899999996666554   3499998  47788889999999999998  588999999999999999999998  


Q ss_pred             ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 003579          128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHV  207 (809)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~i  207 (809)
                        +-++..|..++.++.||+.-  ..|+++|.|.+|+|||..+++++..+.||..-|.|.+|+|..+.+++++-|.+|+|
T Consensus        86 --lftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   86 --LFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             --hhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence              67778889999999999987  89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeC----------------------------CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce-
Q 003579          208 HNVRY----------------------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-  258 (809)
Q Consensus       208 wd~~~----------------------------~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~-  258 (809)
                      ||+..                            +..+..+..+|...|.-++|+|.-. ++++|+.|..|++|.+..-+ 
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc
Confidence            99851                            1123333445678899999999887 99999999999999987653 


Q ss_pred             -eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579          259 -LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (809)
Q Consensus       259 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (809)
                       .+.+.+ +|.+.|.++-|+|.+.++++.|.|++|++||++..+    .+..+....+....++-+|..+.++. +.|+-
T Consensus       241 WEvDtcr-gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----~v~tfrrendRFW~laahP~lNLfAA-gHDsG  314 (1202)
T KOG0292|consen  241 WEVDTCR-GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----SVQTFRRENDRFWILAAHPELNLFAA-GHDSG  314 (1202)
T ss_pred             eeehhhh-cccCCcceEEecCccceeEecCCCccEEEEeccccc----ceeeeeccCCeEEEEEecCCcceeee-ecCCc
Confidence             355666 999999999999999999999999999999998874    45555566677899999999876655 55666


Q ss_pred             EEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee-ccee
Q 003579          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-GEHI  416 (809)
Q Consensus       338 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~  416 (809)
                      +.+|.+....+...+..                                    +.+.... +..++.+|+.+.+- .-..
T Consensus       315 m~VFkleRErpa~~v~~------------------------------------n~LfYvk-d~~i~~~d~~t~~d~~v~~  357 (1202)
T KOG0292|consen  315 MIVFKLERERPAYAVNG------------------------------------NGLFYVK-DRFIRSYDLRTQKDTAVAS  357 (1202)
T ss_pred             eEEEEEcccCceEEEcC------------------------------------CEEEEEc-cceEEeeeccccccceeEe
Confidence            88998876554433322                                    1222222 77888888876322 1222


Q ss_pred             eecCCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC
Q 003579          417 LRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  494 (809)
Q Consensus       417 ~~~~~~~~~~v~~v~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  494 (809)
                      ++.......++.++.++|..+.+++++  .+|.-.++.+.+......-..     ..........+ |-..++..+---.
T Consensus       358 lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~-----~~~k~tG~~a~-fvarNrfavl~k~  431 (1202)
T KOG0292|consen  358 LRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK-----DVKKGTGEGAL-FVARNRFAVLDKS  431 (1202)
T ss_pred             ccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch-----hhhcCCCCceE-EEEecceEEEEec
Confidence            232223346788999999877666653  345556666544321111000     00011112222 2223333333333


Q ss_pred             cCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (809)
Q Consensus       495 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s  574 (809)
                      +..+.+=++.+. ..+.+........+-+.-.|.+|+..  ...|.+||++..+.+..+.  ...|.-+.||+|+.+++-
T Consensus       432 ~~~v~ik~l~N~-vtkkl~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAl  506 (1202)
T KOG0292|consen  432 NEQVVIKNLKNK-VTKKLLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVAL  506 (1202)
T ss_pred             CcceEEecccch-hhhcccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhh
Confidence            455555555432 22233333445556666666665543  4579999999988888776  467889999999988776


Q ss_pred             EeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEe
Q 003579          575 SGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV  618 (809)
Q Consensus       575 ~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~  618 (809)
                      -+ -.+|.|.+.. -+.+..++..-.|.+-+|..+|-+|.++..
T Consensus       507 l~-Kh~i~i~~kk-L~l~~sihEtiriksgawde~gVfiYtT~n  548 (1202)
T KOG0292|consen  507 LS-KHTITIADKK-LELLCSIHETIRIKSGAWDEDGVFIYTTLN  548 (1202)
T ss_pred             cc-cceEEEEecc-hhheecchheeEeeeceeccCceEEEEehh
Confidence            65 4678888854 445555555555788888888877776643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.4e-36  Score=312.60  Aligned_cols=280  Identities=21%  Similarity=0.365  Sum_probs=242.3

Q ss_pred             eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (809)
Q Consensus       173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw  252 (809)
                      +.+++......++|..|++++..+|.|..|..|++|.+... .+..++..        ++-.    .+=+++.|-.+.+.
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~--------~~l~----~~d~~sad~~~~~~  436 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA--------SDLS----NIDTESADVDVDML  436 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch--------hhhc----cccccccchhhhhc
Confidence            56677777788999999999999999999999999998754 33333321        1111    12234445557778


Q ss_pred             ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (809)
Q Consensus       253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (809)
                      |..+......+. +|.++|.++.|+|+.++|++++.|+++|+|.+++.    ..+....||..||..+.|+|.|-+++|+
T Consensus       437 D~~~~~~~~~L~-GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~GyYFata  511 (707)
T KOG0263|consen  437 DDDSSGTSRTLY-GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPRGYYFATA  511 (707)
T ss_pred             cccCCceeEEee-cCCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCCceEEEec
Confidence            877777777777 99999999999999999999999999999999887    5677777999999999999999999999


Q ss_pred             ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (809)
Q Consensus       333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  412 (809)
                      +.|++.++|+.......+                                                              
T Consensus       512 s~D~tArLWs~d~~~PlR--------------------------------------------------------------  529 (707)
T KOG0263|consen  512 SHDQTARLWSTDHNKPLR--------------------------------------------------------------  529 (707)
T ss_pred             CCCceeeeeecccCCchh--------------------------------------------------------------
Confidence            999999999865422211                                                              


Q ss_pred             cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE
Q 003579          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA  492 (809)
Q Consensus       413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  492 (809)
                                                                      .        ..+|.+.|.|+.|+|+..++++|
T Consensus       530 ------------------------------------------------i--------faghlsDV~cv~FHPNs~Y~aTG  553 (707)
T KOG0263|consen  530 ------------------------------------------------I--------FAGHLSDVDCVSFHPNSNYVATG  553 (707)
T ss_pred             ------------------------------------------------h--------hcccccccceEEECCcccccccC
Confidence                                                            1        13899999999999999999999


Q ss_pred             eCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCE
Q 003579          493 GYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW  571 (809)
Q Consensus       493 ~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~  571 (809)
                      +.|.+||+||..+|..++.+..+ ++|.+++|+|+|++||+|+.||.|.+||+.+++++..+.+|++.|.++.||.||..
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v  633 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV  633 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence            99999999999999999999877 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEEcCC
Q 003579          572 LLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       572 l~s~s~D~~I~vwd~~~  588 (809)
                      ||+|+.|++|++||+..
T Consensus       634 Lasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  634 LASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEecCCCCeEEEEEchh
Confidence            99999999999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.3e-34  Score=275.05  Aligned_cols=340  Identities=19%  Similarity=0.270  Sum_probs=287.0

Q ss_pred             eeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (809)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd  209 (809)
                      +.++..|...+..+.++|+.  +.+++|+.|..-.+|++.+|.....+.+|...|+++.||.+|.+||+|..+|.|+||.
T Consensus        57 ~~tF~~H~~svFavsl~P~~--~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNN--NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             eeehhhcCCceEEEEeCCCC--ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            44566688888899999955  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC
Q 003579          210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (809)
Q Consensus       210 ~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d  289 (809)
                      ..++.....+... -+.+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|+|+.++++..|
T Consensus       135 ~stg~~~~~~~~e-~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  135 VSTGGEQWKLDQE-VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             cccCceEEEeecc-cCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEecC
Confidence            9999998888754 56799999999888 99999999999999999988888888 999999999999999999999999


Q ss_pred             CcEEEEEeeCCCCCceeEEecc-CCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchh
Q 003579          290 NSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  368 (809)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (809)
                      |+|++|+..+..    ++.... ....+..++.++..+..++.|+.++.+++.+..+++.........            
T Consensus       212 gti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~------------  275 (399)
T KOG0296|consen  212 GTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV------------  275 (399)
T ss_pred             ceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC------------
Confidence            999999876653    222222 234567889999999999999999999888766655433322100            


Q ss_pred             hhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003579          369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  448 (809)
Q Consensus       369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i  448 (809)
                                                                   .+...........|.++.++..=...++|+-||+|
T Consensus       276 ---------------------------------------------~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i  310 (399)
T KOG0296|consen  276 ---------------------------------------------PELKPSQEELDESVESIPSSSKLPLAACGSVDGTI  310 (399)
T ss_pred             ---------------------------------------------ccccccchhhhhhhhhcccccccchhhcccccceE
Confidence                                                         00000001111344555556666788999999999


Q ss_pred             EEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCC
Q 003579          449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN  527 (809)
Q Consensus       449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~  527 (809)
                      .+||+.....+..+         .|...|+.+.|.+ ..+|++++.+|.|+.||.++|+++..+..+ ..|..++++|+.
T Consensus       311 ~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~  380 (399)
T KOG0296|consen  311 AIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK  380 (399)
T ss_pred             EEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence            99999999888877         6899999999998 789999999999999999999999999877 899999999999


Q ss_pred             CEEEEEeCCCeEEEEEcC
Q 003579          528 GLLATVADDLVIRLFDVV  545 (809)
Q Consensus       528 ~~la~~~~d~~I~v~d~~  545 (809)
                      +++++++.|++.+||+..
T Consensus       381 ~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  381 RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cEEEEecCCCeEEEEecC
Confidence            999999999999999864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.8e-34  Score=258.56  Aligned_cols=293  Identities=18%  Similarity=0.308  Sum_probs=240.9

Q ss_pred             ceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeC---CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC
Q 003579          172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY---DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg  247 (809)
                      ..++.+++|.+.+..++|+|. |..||+++.|..|++|+...   -.+...+...|+..|.+++|+|.|+ +||+|+.|.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~   83 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDA   83 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccc
Confidence            456778999999999999998 88999999999999999984   3355556667789999999999999 999999999


Q ss_pred             cEEEEECCCc--eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC
Q 003579          248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (809)
Q Consensus       248 ~I~iwdl~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (809)
                      ++.||.-..+  +++.++. +|.+.|.+++|+++|.+|++++.|++|-+|.++ .+.+..+...+.+|...|..+.|+|.
T Consensus        84 t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             eEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEEeeeccccccccEEEEcCC
Confidence            9999987655  7788888 999999999999999999999999999999988 45667889999999999999999998


Q ss_pred             CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (809)
Q Consensus       326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (809)
                      ...|++++.|.+|++|.-..+                                                           
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~d-----------------------------------------------------------  182 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDEDD-----------------------------------------------------------  182 (312)
T ss_pred             cceeEEeccCCeEEEEeecCC-----------------------------------------------------------
Confidence            889999999999999984311                                                           


Q ss_pred             EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (809)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (809)
                                                    +.+..+                  ..+        .+|...|.+++|++.
T Consensus       183 ------------------------------ddW~c~------------------~tl--------~g~~~TVW~~~F~~~  206 (312)
T KOG0645|consen  183 ------------------------------DDWECV------------------QTL--------DGHENTVWSLAFDNI  206 (312)
T ss_pred             ------------------------------CCeeEE------------------EEe--------cCccceEEEEEecCC
Confidence                                          111111                  111        278888999999999


Q ss_pred             CCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC------eEEE-EEecCCC
Q 003579          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL------RMVR-KFEGHTD  558 (809)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~------~~~~-~~~~h~~  558 (809)
                      |..|++++.|++++||...+.   -...+...+..+.|.  +..||+++.|+.|++|.....      +++. .-..|..
T Consensus       207 G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~  281 (312)
T KOG0645|consen  207 GSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV  281 (312)
T ss_pred             CceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence            999999999999999975521   111233667778887  678999999999999966532      1111 2345889


Q ss_pred             CeeeEEECCC-CCEEEEEeCCCeEEEEEcC
Q 003579          559 RITDFCFSED-GKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       559 ~I~~l~fspd-g~~l~s~s~D~~I~vwd~~  587 (809)
                      .|++++|.|. ...|++++.||.|++|.+.
T Consensus       282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999994 6789999999999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7e-36  Score=311.80  Aligned_cols=283  Identities=25%  Similarity=0.380  Sum_probs=236.6

Q ss_pred             EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEE
Q 003579          215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (809)
Q Consensus       215 ~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~v  294 (809)
                      +..++... ...++|..|++|+. +||.|..|..|++|.+...++. .++  +...+.         .+=+.+.|-.+.+
T Consensus       370 c~YT~~nt-~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~-~lk--~~~~l~---------~~d~~sad~~~~~  435 (707)
T KOG0263|consen  370 CMYTFHNT-YQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLK-KLK--DASDLS---------NIDTESADVDVDM  435 (707)
T ss_pred             EEEEEEEc-CCcceeEeecCCcc-hhhccccccEEEEEecchhhhc-ccc--chhhhc---------cccccccchhhhh
Confidence            34445444 46799999999999 9999999999999999765432 222  221111         1223344444555


Q ss_pred             EEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (809)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (809)
                      .|.+..    ...+.+.||.+||....|+|+.++|++++.|+++|+|++.+.....                        
T Consensus       436 ~D~~~~----~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V------------------------  487 (707)
T KOG0263|consen  436 LDDDSS----GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------  487 (707)
T ss_pred             ccccCC----ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE------------------------
Confidence            544433    3445577999999999999999999999999999999986432110                        


Q ss_pred             ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (809)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~  454 (809)
                                                                                                      
T Consensus       488 --------------------------------------------------------------------------------  487 (707)
T KOG0263|consen  488 --------------------------------------------------------------------------------  487 (707)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEE
Q 003579          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATV  533 (809)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~  533 (809)
                            .+        .+|..+|..+.|+|.|-++||++.|++-++|.....++++.+..+ +.+.|+.|||++.|+|+|
T Consensus       488 ------~y--------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG  553 (707)
T KOG0263|consen  488 ------IY--------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG  553 (707)
T ss_pred             ------Ee--------cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC
Confidence                  11        389999999999999999999999999999999999999998877 899999999999999999


Q ss_pred             eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCe
Q 003579          534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDV  612 (809)
Q Consensus       534 ~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~  612 (809)
                      +.|.++|+||+.+|..+|.|.||.++|++++|||+|++|++|+.||.|.+||+.+|+++..+..|.. |.++.||.||..
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v  633 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV  633 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999987765 999999999999


Q ss_pred             EEEEEeCCCeEEEeecCcccCC
Q 003579          613 LATAHVDQNGVYLWVNRCMFSG  634 (809)
Q Consensus       613 lat~~~d~~~i~lW~~~~~~~~  634 (809)
                      ||++|.|. +|++||+...+..
T Consensus       634 Lasgg~Dn-sV~lWD~~~~~~~  654 (707)
T KOG0263|consen  634 LASGGADN-SVRLWDLTKVIEL  654 (707)
T ss_pred             EEecCCCC-eEEEEEchhhccc
Confidence            99999998 7999998755544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=3.6e-32  Score=268.21  Aligned_cols=454  Identities=16%  Similarity=0.232  Sum_probs=342.5

Q ss_pred             eEEEEEcCccEEEEecCCCCCCcEEEEEeCC--eEEEE-E--CCe--EEEEECCe--eEEEEccccccEEEEEE---eCC
Q 003579           37 AFHIYNCAKLNLVLVGPQLPKKIRALASYRD--YTFAA-Y--GNH--IAVVKRAH--QVATWSRHSAKVNLLLL---FGE  104 (809)
Q Consensus        37 ~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~--~~~~a-~--g~~--i~vw~~~~--~~~~~~~h~~~V~~l~~---~g~  104 (809)
                      .+++||..+++.+++.......|+|+||++-  +.+++ .  ++.  +.|||-.+  .....+.-...|....|   +.+
T Consensus       135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n  214 (626)
T KOG2106|consen  135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN  214 (626)
T ss_pred             eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc
Confidence            3899999999999998888999999999975  44443 3  222  77776543  33345555556666666   567


Q ss_pred             EEEEEeCCCcEEEEEcCCCccccceeeeEE-cCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC
Q 003579          105 HILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS  183 (809)
Q Consensus       105 ~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~  183 (809)
                      .+++++ .|.+.+|+..++...... ..++ ...+++.++.|.+++.   +++|..+|.|.||+..+.+..+....|.+.
T Consensus       215 liit~G-k~H~~Fw~~~~~~l~k~~-~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg  289 (626)
T KOG2106|consen  215 LIITCG-KGHLYFWTLRGGSLVKRQ-GIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGG  289 (626)
T ss_pred             EEEEeC-CceEEEEEccCCceEEEe-eccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCc
Confidence            777777 899999999988763221 1222 2346777888999884   999999999999999888888887899999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEec-cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeee
Q 003579          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV  262 (809)
Q Consensus       184 I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~  262 (809)
                      |.+++...+|.+|- |+.|..|..|| ..-+.++.... ...++|..++=..  . -+.+|...+.|.-=.++++-.+..
T Consensus       290 v~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~--~-di~vGTtrN~iL~Gt~~~~f~~~v  364 (626)
T KOG2106|consen  290 VFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK--G-DILVGTTRNFILQGTLENGFTLTV  364 (626)
T ss_pred             eEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCC--C-cEEEeeccceEEEeeecCCceEEE
Confidence            99999999997655 99999999999 33333433332 2256787776432  2 266777777777777776655444


Q ss_pred             eecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579          263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (809)
Q Consensus       263 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  342 (809)
                      .  +|......++..|+.+++++++.|+.+++|+  ..    ++.-. ..-..+..|+.|+|.| .++.|...|...+.|
T Consensus       365 ~--gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~----k~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d  434 (626)
T KOG2106|consen  365 Q--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH----KLEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLD  434 (626)
T ss_pred             E--ecccceeeEEcCCChhheeeccCcceEEEcc--CC----ceeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEe
Confidence            3  7999999999999999999999999999997  21    22222 2345688999999999 999999999999988


Q ss_pred             eeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC
Q 003579          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (809)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (809)
                      ..+......                                            |.                         
T Consensus       435 ~e~~~lv~~--------------------------------------------~~-------------------------  445 (626)
T KOG2106|consen  435 TETQDLVTI--------------------------------------------HT-------------------------  445 (626)
T ss_pred             cccceeEEE--------------------------------------------Ee-------------------------
Confidence            765322111                                            10                         


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (809)
Q Consensus       423 ~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw  501 (809)
                      ...+++++.++|+|.++++|+.|+.|++|.+..+... ....       ..|..+|+.+.|++|++++.+-+.|-.|-+|
T Consensus       446 d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-------k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  446 DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-------KCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-------eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            1378999999999999999999999999998654433 3332       2455899999999999999999999999999


Q ss_pred             ECCCCceeeee---e----------------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC---eEEEEEecCCCC
Q 003579          502 DFKGRDLKSRW---E----------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHTDR  559 (809)
Q Consensus       502 d~~~~~~~~~~---~----------------~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~---~~~~~~~~h~~~  559 (809)
                      .-...+.....   +                ....+..++-+.+.+++|+|.+.|.|++|...--   ....++.+|.+.
T Consensus       519 ~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~  598 (626)
T KOG2106|consen  519 KPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSH  598 (626)
T ss_pred             ccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccce
Confidence            43332221111   1                1244555666777889999999999999987543   345677899999


Q ss_pred             eeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579          560 ITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       560 I~~l~fspdg~~l~s~s~D~~I~vwd~  586 (809)
                      |++++|+.+...+++.+.|.+|..|++
T Consensus       599 vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  599 VTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eEEEEEeeCCceEEecCCCceEEEEEe
Confidence            999999998888888889999999986

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1e-35  Score=286.20  Aligned_cols=279  Identities=21%  Similarity=0.386  Sum_probs=244.5

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      +.+|..+.|.|+|+ .|++|+..|.+.+|+...-.....++ +|+++|+++.|++++.++++|+.+|.|++|+.+...  
T Consensus        96 kc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--  171 (464)
T ss_pred             ccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchhh--
Confidence            56899999999999 88999999999999986555555555 999999999999999999999999999999766542  


Q ss_pred             ceeEEeccC-CCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579          304 PRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (809)
Q Consensus       304 ~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (809)
                         ++...+ |...|++++|+|+...+++|+.||+|++||....++...                               
T Consensus       172 ---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v-------------------------------  217 (464)
T KOG0284|consen  172 ---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV-------------------------------  217 (464)
T ss_pred             ---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe-------------------------------
Confidence               333344 458999999999888999999999999999765433211                               


Q ss_pred             cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (809)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (809)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (464)
T KOG0284|consen  218 --------------------------------------------------------------------------------  217 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEE
Q 003579          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL  541 (809)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v  541 (809)
                             +.+|.-.|.+++|+|...+++++|.|..|++||.+++.++.++..+ ..|..+.|++++.+|++++.|..+++
T Consensus       218 -------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv  290 (464)
T KOG0284|consen  218 -------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV  290 (464)
T ss_pred             -------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence                   1289999999999999999999999999999999999999998766 88999999999999999999999999


Q ss_pred             EEcCCCeEEEEEecCCCCeeeEEECCC-CCEEEEEeCCCeEEEEEcCCccEEEEee--eCcceEEEEEcCCCCeEEEEEe
Q 003579          542 FDVVALRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHV  618 (809)
Q Consensus       542 ~d~~~~~~~~~~~~h~~~I~~l~fspd-g~~l~s~s~D~~I~vwd~~~~~~i~~~~--~~~~v~~l~~spdg~~lat~~~  618 (809)
                      +|+++.+.++++++|...|++++|+|- ..++.+|+.||.|..|.+...+++..+.  +...|++++|+|-|..|++++.
T Consensus       291 ~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn  370 (464)
T KOG0284|consen  291 FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN  370 (464)
T ss_pred             EehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence            999999999999999999999999994 4578899999999999999767666554  3445999999999999999999


Q ss_pred             CCCeEEEeec
Q 003579          619 DQNGVYLWVN  628 (809)
Q Consensus       619 d~~~i~lW~~  628 (809)
                      |. ++++|.-
T Consensus       371 d~-t~rfw~r  379 (464)
T KOG0284|consen  371 DR-TVRFWTR  379 (464)
T ss_pred             Cc-ceeeecc
Confidence            98 6999974

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.3e-34  Score=270.84  Aligned_cols=281  Identities=20%  Similarity=0.401  Sum_probs=253.8

Q ss_pred             ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       221 ~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~  300 (809)
                      .+|.+.|.|+++.|.++ .+++|+.|++|.|||+.+|++..++. +|-..|..+++++-.++|++++.|+.|+.||+...
T Consensus       148 ~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             hhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence            44589999999999887 99999999999999999999999998 99999999999999999999999999999999877


Q ss_pred             CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (809)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (809)
                          +.++...||-..|.|++.+|.-..|++|+.|.++++||+++..+...+                            
T Consensus       226 ----kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l----------------------------  273 (460)
T KOG0285|consen  226 ----KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL----------------------------  273 (460)
T ss_pred             ----hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe----------------------------
Confidence                678888999999999999998889999999999999998765332211                            


Q ss_pred             eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 003579          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (809)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (809)
                                                                                                      
T Consensus       274 --------------------------------------------------------------------------------  273 (460)
T KOG0285|consen  274 --------------------------------------------------------------------------------  273 (460)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeE
Q 003579          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVI  539 (809)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I  539 (809)
                                .+|..+|..+.+.|-+..+++|+.|++|++||+..++...++.++ ..+.+++.+|....+|+++.| .|
T Consensus       274 ----------~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-ni  342 (460)
T KOG0285|consen  274 ----------SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NI  342 (460)
T ss_pred             ----------cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cc
Confidence                      389999999999999999999999999999999999988888766 789999999999999999877 59


Q ss_pred             EEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee---------eCcceEEEEEcCCC
Q 003579          540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH---------VDVSITALSLSPNM  610 (809)
Q Consensus       540 ~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~---------~~~~v~~l~~spdg  610 (809)
                      +-|++..+..+..+.+|..-|++++...|| ++++|+..|.+..||..+|...+...         .+..|.+.+|...|
T Consensus       343 k~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  343 KQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             eeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence            999999999999999999999999999887 78899999999999999987655442         23459999999999


Q ss_pred             CeEEEEEeCCCeEEEeec
Q 003579          611 DVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       611 ~~lat~~~d~~~i~lW~~  628 (809)
                      ..|+|+..|. +|++|.-
T Consensus       422 ~rlit~eadK-tIk~~ke  438 (460)
T KOG0285|consen  422 SRLITGEADK-TIKMYKE  438 (460)
T ss_pred             ceEEeccCCc-ceEEEec
Confidence            9999999998 6999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-34  Score=273.56  Aligned_cols=300  Identities=15%  Similarity=0.262  Sum_probs=262.8

Q ss_pred             EEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC
Q 003579          133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY  212 (809)
Q Consensus       133 ~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~  212 (809)
                      +..+...+....+||+-  ..+++++.|++|++||..+|++...+++|...+..++|+..|+++|+++.|-.+.+||..+
T Consensus       104 l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~  181 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT  181 (406)
T ss_pred             hhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence            34456667788899998  6788999999999999999999999999999999999999999999999999999999986


Q ss_pred             -CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCc
Q 003579          213 -DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS  291 (809)
Q Consensus       213 -~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~  291 (809)
                       .+++....++ ...|.+++|.|.|. ++++++.|.+|+.|++.++-++.++. +|...|..+..+.||.++++++.|.+
T Consensus       182 ~~~c~ks~~gh-~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  182 FFRCIKSLIGH-EHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             HHHHHHHhcCc-ccceeeEEEEecCC-eeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCeeEEEecCCCce
Confidence             3455555544 78899999999998 89999999999999999999999999 99999999999999999999999999


Q ss_pred             EEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhh
Q 003579          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (809)
Q Consensus       292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (809)
                      +++|-+.+.    .+...+.+|..+|.|++|.|...  ++...+.+                                  
T Consensus       259 l~vW~~~t~----~~k~~lR~hEh~vEci~wap~~~--~~~i~~at----------------------------------  298 (406)
T KOG0295|consen  259 LRVWVVATK----QCKAELREHEHPVECIAWAPESS--YPSISEAT----------------------------------  298 (406)
T ss_pred             EEEEEeccc----hhhhhhhccccceEEEEeccccc--Ccchhhcc----------------------------------
Confidence            999988776    45556679999999999998642  11110000                                  


Q ss_pred             ccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003579          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  451 (809)
Q Consensus       372 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~  451 (809)
                                                                        +. .        ..|.++.+++.|++|++|
T Consensus       299 --------------------------------------------------~~-~--------~~~~~l~s~SrDktIk~w  319 (406)
T KOG0295|consen  299 --------------------------------------------------GS-T--------NGGQVLGSGSRDKTIKIW  319 (406)
T ss_pred             --------------------------------------------------CC-C--------CCccEEEeecccceEEEE
Confidence                                                              00 0        036789999999999999


Q ss_pred             ECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEE
Q 003579          452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLL  530 (809)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~l  530 (809)
                      |+++|..+.++.        +|...|.+++|+|.|++|+++..|+++++||++++++...++.+ .-++++.|+.+..++
T Consensus       320 dv~tg~cL~tL~--------ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  320 DVSTGMCLFTLV--------GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             eccCCeEEEEEe--------cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence            999999999887        99999999999999999999999999999999999999998866 788999999999999


Q ss_pred             EEEeCCCeEEEEEc
Q 003579          531 ATVADDLVIRLFDV  544 (809)
Q Consensus       531 a~~~~d~~I~v~d~  544 (809)
                      ++|+-|..+++|..
T Consensus       392 vTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  392 VTGSVDQTVKVWEC  405 (406)
T ss_pred             Eeccccceeeeeec
Confidence            99999999999964

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-32  Score=287.43  Aligned_cols=408  Identities=17%  Similarity=0.275  Sum_probs=312.4

Q ss_pred             CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEE
Q 003579          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL  216 (809)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~  216 (809)
                      ...+-...|||..  ..|+++-..|.|++||.+-+.++..|..|.++|..++|+|...++++|+.|-.|++|+.++.+++
T Consensus         9 SsRvKglsFHP~r--PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKR--PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             cccccceecCCCC--CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence            3445677899999  89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (809)
Q Consensus       217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~  296 (809)
                      .++.+| -+.|..+.|++.-. .++++|.|.+|+|||..+++++..+. +|...|.|.+|+|...+++++|-|.+||+||
T Consensus        87 ftL~GH-lDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQTVRVWD  163 (1202)
T KOG0292|consen   87 FTLLGH-LDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQTVRVWD  163 (1202)
T ss_pred             hhhccc-cceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccceEEEecccceEEEEe
Confidence            999987 88999999999887 89999999999999999999999999 9999999999999999999999999999999


Q ss_pred             eeCCC------C-------------------CceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccccee
Q 003579          297 FDTTD------G-------------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (809)
Q Consensus       297 ~~~~~------~-------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  351 (809)
                      +..-.      +                   .......+.||...|+-++|+|.-..+++|+.|+.|++|.....+    
T Consensus       164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK----  239 (1202)
T KOG0292|consen  164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK----  239 (1202)
T ss_pred             ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc----
Confidence            85320      0                   122345678999999999999999999999999999999864321    


Q ss_pred             cchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE
Q 003579          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (809)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~  431 (809)
                                                                                    .+...++.+|...|+++-
T Consensus       240 --------------------------------------------------------------aWEvDtcrgH~nnVssvl  257 (1202)
T KOG0292|consen  240 --------------------------------------------------------------AWEVDTCRGHYNNVSSVL  257 (1202)
T ss_pred             --------------------------------------------------------------ceeehhhhcccCCcceEE
Confidence                                                                          233445568889999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC---------------
Q 003579          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---------------  496 (809)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---------------  496 (809)
                      |+|..+.+++.+.|+.|++||+........+.        ......+.++.+|..++++.|-..|               
T Consensus       258 fhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--------rendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v  329 (1202)
T KOG0292|consen  258 FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--------RENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAV  329 (1202)
T ss_pred             ecCccceeEecCCCccEEEEecccccceeeee--------ccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEE
Confidence            99999999999999999999999999988886        4556778888888877666544333               


Q ss_pred             -----------eEEEEECCCCceee--eeecC----CCeEEEEEeeCCCEEEEEe--CCCeEEEEEcCCC----------
Q 003579          497 -----------DIKVWDFKGRDLKS--RWEVG----CSLVKIVYHRVNGLLATVA--DDLVIRLFDVVAL----------  547 (809)
Q Consensus       497 -----------~i~iwd~~~~~~~~--~~~~~----~~i~~~~~s~~~~~la~~~--~d~~I~v~d~~~~----------  547 (809)
                                 .|+.+|+.+.+-..  .+...    .+..++.|+|..+.+..++  +++.--++.+...          
T Consensus       330 ~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~  409 (1202)
T KOG0292|consen  330 NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDV  409 (1202)
T ss_pred             cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhh
Confidence                       23333433322211  12221    5678899999666544442  2343334433211          


Q ss_pred             -------------------------eEEEEEec-------CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEe
Q 003579          548 -------------------------RMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI  595 (809)
Q Consensus       548 -------------------------~~~~~~~~-------h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~  595 (809)
                                               -.++.+..       -...+..|-+..+|.+|+..  ...|.++|++..+.+..+
T Consensus       410 ~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si  487 (1202)
T KOG0292|consen  410 KKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSI  487 (1202)
T ss_pred             hcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEE
Confidence                                     00011110       00123344455566555432  346899999988888777


Q ss_pred             eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          596 HVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       596 ~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                      .. +.|.-+.||+|+.++|--+..  +|.|.+-
T Consensus       488 ~~-s~vkyvvws~dm~~vAll~Kh--~i~i~~k  517 (1202)
T KOG0292|consen  488 KV-SKVKYVVWSNDMSRVALLSKH--TITIADK  517 (1202)
T ss_pred             ec-CceeEEEEcCccchhhhcccc--eEEEEec
Confidence            65 358889999998877766544  3555543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-34  Score=276.92  Aligned_cols=291  Identities=21%  Similarity=0.321  Sum_probs=252.3

Q ss_pred             eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (809)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~  340 (809)
                      +.+. .|...|.-+.|+++|++||+++.|.+..+|.+..... .++.+++.+|..+|..+.|+||.++|++|+.|..+++
T Consensus       218 qil~-~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  218 QILQ-DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhHh-hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            3444 8999999999999999999999999999999876654 5778899999999999999999999999999999999


Q ss_pred             EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (809)
Q Consensus       341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (809)
                      ||+.++.....+..                                                                  
T Consensus       296 wDv~tgd~~~~y~~------------------------------------------------------------------  309 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPS------------------------------------------------------------------  309 (519)
T ss_pred             ccCCcchhhhhccc------------------------------------------------------------------
Confidence            99987765443322                                                                  


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                       ++...+.+++|.|||..+++|+.|+.+..|++..... ....       .-....|.++++.+||+++++.+.|..|++
T Consensus       310 -~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~-------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l  380 (519)
T KOG0293|consen  310 -GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWE-------GVRDPKVHDLAITYDGKYVLLVTVDKKIRL  380 (519)
T ss_pred             -CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hccc-------ccccceeEEEEEcCCCcEEEEEecccceee
Confidence             1236789999999999999999999999999976543 2222       123356999999999999999999999999


Q ss_pred             EECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC--eeeEEECC-CCCEEEEEeC
Q 003579          501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSE-DGKWLLSSGM  577 (809)
Q Consensus       501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~--I~~l~fsp-dg~~l~s~s~  577 (809)
                      ++..+...+..+..+.+|++++.|.+++++.+.-.+..+++||++..+.++++.||...  |-.-||-. +..++++||+
T Consensus       381 ~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE  460 (519)
T KOG0293|consen  381 YNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE  460 (519)
T ss_pred             echhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence            99998888888888899999999999999999999999999999999999999999854  33445654 5589999999


Q ss_pred             CCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCC-CeEEEEEeCCCeEEEeecC
Q 003579          578 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNM-DVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       578 D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg-~~lat~~~d~~~i~lW~~~  629 (809)
                      |+.|+||+..+|+++..+.+|.. |++|+|+|.. .++|+|+.|+ +|+||.+.
T Consensus       461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg~~  513 (519)
T KOG0293|consen  461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWGPS  513 (519)
T ss_pred             CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEecCC
Confidence            99999999999999999999886 9999999954 6788888888 79999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.4e-33  Score=259.80  Aligned_cols=282  Identities=18%  Similarity=0.337  Sum_probs=247.4

Q ss_pred             ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (809)
Q Consensus       221 ~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~  299 (809)
                      .+|++.|..+.|+|+|. ++|+|+.|..|.+|+.... +....+. +|.+.|..+.|.+|+..++++|.|.+++.||..+
T Consensus        44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            45699999999999999 9999999999999996544 4555666 9999999999999999999999999999999988


Q ss_pred             CCCCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeE
Q 003579          300 TDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (809)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (809)
                      +    +..+...+|..-|+.+.-..-| ..+.+++.|+++++||+++....+.+.                         
T Consensus       122 G----~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------------------------  172 (338)
T KOG0265|consen  122 G----KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------------------------  172 (338)
T ss_pred             c----eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------
Confidence            7    6778888999999998855544 456688899999999998766554432                         


Q ss_pred             EeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 003579          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (809)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~  458 (809)
                                                                  .+.++++++|...+..+.+|.-|+.|++||+..+..
T Consensus       173 --------------------------------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~  208 (338)
T KOG0265|consen  173 --------------------------------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG  208 (338)
T ss_pred             --------------------------------------------cceeEEEEEecccccceeeccccCceeeeccccCcc
Confidence                                                        237899999999999999999999999999999888


Q ss_pred             eeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC----ceeeeeecC-----CCeEEEEEeeCCCE
Q 003579          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG-----CSLVKIVYHRVNGL  529 (809)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-----~~i~~~~~s~~~~~  529 (809)
                      ...+.        +|...|+++..+++|.++.+-+.|.++++||++..    .++..+..+     .....++|+|++..
T Consensus       209 ~~~ls--------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~  280 (338)
T KOG0265|consen  209 LYTLS--------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK  280 (338)
T ss_pred             eEEee--------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence            88775        99999999999999999999999999999998743    345555443     45677899999999


Q ss_pred             EEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       530 la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      +.+|+.|..+++||..+.+.+..+.||.+.|+.++|+|...+|.+++.|.+|++=.
T Consensus       281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99999999999999999999999999999999999999999999999999998743

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=249.16  Aligned_cols=294  Identities=18%  Similarity=0.278  Sum_probs=243.7

Q ss_pred             eeeEEcCCccccEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCC---ceEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 003579          130 VGHVKLDDKFTPTCIMHPD-TYLNKVIVGSQEGSLQLWNISTK---KKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGK  204 (809)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~-~~~~~l~~~~~dg~i~lwd~~~~---~~~~~~-~~~~~~I~~l~~sp~~~~la~g~~dg~  204 (809)
                      +..++.+...+...++||. +  ..|++++.|..|++|+...+   .+...+ .+|...|.+++|+|.|++||+|+-|.+
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g--~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKG--VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCc--eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            5566777778889999998 6  68999999999999998743   333333 479999999999999999999999999


Q ss_pred             EEEEEeeCC--eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc---eeeeeeecccccceEEEEEecC
Q 003579          205 IHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFAN  279 (809)
Q Consensus       205 i~iwd~~~~--~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~---~~~~~~~~~h~~~V~~l~~~~~  279 (809)
                      +.||.-..+  +++..+.+| ...|.|++|+++|. +||+++.|..|-||.+..+   .+...+. .|...|..+.|+|.
T Consensus        85 ~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGH-ENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPT  161 (312)
T ss_pred             EEEeecCCCceeEEeeeecc-ccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCC
Confidence            999986644  467777765 88999999999999 9999999999999998754   5677777 99999999999999


Q ss_pred             CCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHH
Q 003579          280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK  359 (809)
Q Consensus       280 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  359 (809)
                      ..+|+++|.|++|++|..+. +....+...+.+|...|.+++|++.|..|++++.|+++++|.....-            
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------  228 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------  228 (312)
T ss_pred             cceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------
Confidence            99999999999999998765 67789999999999999999999999999999999999999854210            


Q ss_pred             HHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEE
Q 003579          360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA  439 (809)
Q Consensus       360 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l  439 (809)
                                                                                  ...|...+..+++.  ...+
T Consensus       229 ------------------------------------------------------------~~~~sr~~Y~v~W~--~~~I  246 (312)
T KOG0645|consen  229 ------------------------------------------------------------SGMHSRALYDVPWD--NGVI  246 (312)
T ss_pred             ------------------------------------------------------------chhcccceEeeeec--ccce
Confidence                                                                        01233677778887  5688


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC-CCEEEEEeCcCeEEEEECC
Q 003579          440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       440 ~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~  504 (809)
                      ++++.|+.|++|.-..+.....+... ......|...|++++++|. ..+|++++.||.|++|.+.
T Consensus       247 aS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  247 ASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EeccCCCEEEEEEecCCCCCchHHHH-HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            99999999999987754222222110 1112479999999999995 6789999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4e-32  Score=280.86  Aligned_cols=287  Identities=29%  Similarity=0.476  Sum_probs=249.8

Q ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE
Q 003579          174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (809)
Q Consensus       174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd  253 (809)
                      +.++++|..+|++++|+|++++|++++.+|.+++|++.+++....+..+ ...+..+.|+++++ .+++++.+|.|++||
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~   79 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGT-YLASGSSDKTIRLWD   79 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCC-EEEEEcCCCeEEEEE
Confidence            3457789999999999999999999999999999999988877777665 67889999999997 899999999999999


Q ss_pred             CCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE
Q 003579          254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (809)
Q Consensus       254 l~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (809)
                      +.+++....+. .|...+.++.|++++.++++++.|+.+++|++...    +....+..|...+.++.|+|++.++++++
T Consensus        80 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  154 (289)
T cd00200          80 LETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPDGTFVASSS  154 (289)
T ss_pred             cCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence            99988888887 88889999999999889998888999999988743    45556668888899999999888888877


Q ss_pred             CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeec
Q 003579          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (809)
Q Consensus       334 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  413 (809)
                      .|+.+++||+...+.                                                                 
T Consensus       155 ~~~~i~i~d~~~~~~-----------------------------------------------------------------  169 (289)
T cd00200         155 QDGTIKLWDLRTGKC-----------------------------------------------------------------  169 (289)
T ss_pred             CCCcEEEEEcccccc-----------------------------------------------------------------
Confidence            788888888643211                                                                 


Q ss_pred             ceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe
Q 003579          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG  493 (809)
Q Consensus       414 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  493 (809)
                                                                   ...+        ..|...+.+++++|+++.+++++
T Consensus       170 ---------------------------------------------~~~~--------~~~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         170 ---------------------------------------------VATL--------TGHTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             ---------------------------------------------ceeE--------ecCccccceEEECCCcCEEEEec
Confidence                                                         1111        15667889999999998999999


Q ss_pred             CcCeEEEEECCCCceeeee-ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEE
Q 003579          494 YHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL  572 (809)
Q Consensus       494 ~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l  572 (809)
                      .|+.|++||+.+++.+..+ .+...+.++.|++++.++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|
T Consensus       197 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  276 (289)
T cd00200         197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL  276 (289)
T ss_pred             CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEE
Confidence            9999999999998888888 445799999999998888888889999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEE
Q 003579          573 LSSGMDGSLRIWD  585 (809)
Q Consensus       573 ~s~s~D~~I~vwd  585 (809)
                      ++++.|+.|++|+
T Consensus       277 ~~~~~d~~i~iw~  289 (289)
T cd00200         277 ASGSADGTIRIWD  289 (289)
T ss_pred             EEecCCCeEEecC
Confidence            9999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.7e-33  Score=264.75  Aligned_cols=295  Identities=17%  Similarity=0.262  Sum_probs=258.3

Q ss_pred             EEEEccccccEEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeE
Q 003579           86 VATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (809)
Q Consensus        86 ~~~~~~h~~~V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i  163 (809)
                      .+.+.||.+.|.|++++  ..|+++++.|++|+|||+.++++    ..++..+...+..+++++-.  .++++++.|+.|
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----kltltGhi~~vr~vavS~rH--pYlFs~gedk~V  217 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----KLTLTGHIETVRGVAVSKRH--PYLFSAGEDKQV  217 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE----EEeecchhheeeeeeecccC--ceEEEecCCCee
Confidence            34488999999999985  78999999999999999999998    66777777778888999988  789999999999


Q ss_pred             EEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEE
Q 003579          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (809)
Q Consensus       164 ~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg  243 (809)
                      +.||++..+.++.+.||-+.|.|++.+|..++|++|+.|.+++|||+++...+..+.+| ..+|.++.+.|-.. .+++|
T Consensus       218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dp-qvit~  295 (460)
T KOG0285|consen  218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDP-QVITG  295 (460)
T ss_pred             EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCC-ceEEe
Confidence            99999999999999999999999999999999999999999999999999999999887 89999999998766 68999


Q ss_pred             cCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEe
Q 003579          244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (809)
Q Consensus       244 ~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (809)
                      +.|++|++||+..|+...++. .|...|.+++.+|....+++++.|+ ++-|++..+    ..+..+.+|.+-+++++.+
T Consensus       296 S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g----~f~~nlsgh~~iintl~~n  369 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG----EFLQNLSGHNAIINTLSVN  369 (460)
T ss_pred             cCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc----chhhccccccceeeeeeec
Confidence            999999999999999999998 8999999999999999999999875 899987655    4566688999999999999


Q ss_pred             cCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEE
Q 003579          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (809)
Q Consensus       324 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (809)
                      .|| ++++|+.+|.+.+||.+++..-+.....                                                
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~------------------------------------------------  400 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI------------------------------------------------  400 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcCccccccccc------------------------------------------------
Confidence            887 8899999999999999877544332110                                                


Q ss_pred             EEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003579          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (809)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~  455 (809)
                                  ...........|.+.+|...|..|++|..|.+|.+|.-..
T Consensus       401 ------------vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  401 ------------VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             ------------ccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence                        0000112337899999999999999999999999997543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8e-33  Score=256.30  Aligned_cols=297  Identities=19%  Similarity=0.277  Sum_probs=255.6

Q ss_pred             ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeC-CCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 003579          128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI-STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIH  206 (809)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~-~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~  206 (809)
                      .|+..+..+.+.+..+.|+|++  ..+++|+.|..|.+|++ ...+....+++|.++|..+.|.+|++.|++++.|.+++
T Consensus        38 ap~m~l~gh~geI~~~~F~P~g--s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDG--SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCC--CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence            3455667788899999999999  89999999999999995 45567788899999999999999999999999999999


Q ss_pred             EEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEE
Q 003579          207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA  286 (809)
Q Consensus       207 iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~  286 (809)
                      .||.++|+.++.++.| ..-|.++.-+.-|..++.+|+.||++++||+++...++++.  ....++++.|...+..+++|
T Consensus       116 ~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sg  192 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISG  192 (338)
T ss_pred             EEecccceeeehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeec
Confidence            9999999999999987 78899999777787788899999999999999998888875  56789999999999999999


Q ss_pred             cCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccc
Q 003579          287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  366 (809)
Q Consensus       287 s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  366 (809)
                      +-|+.|++||+...    ..+..+.||..+|+.+..+++|.++++-+.|.++++||++.-.....               
T Consensus       193 gIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R---------------  253 (338)
T KOG0265|consen  193 GIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR---------------  253 (338)
T ss_pred             cccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc---------------
Confidence            99999999998776    45777889999999999999999999999999999999875433221               


Q ss_pred             hhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 003579          367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG  446 (809)
Q Consensus       367 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g  446 (809)
                                                        .+.++.-..     +      ........++|+|+++++..|+.|.
T Consensus       254 ----------------------------------~v~if~g~~-----h------nfeknlL~cswsp~~~~i~ags~dr  288 (338)
T KOG0265|consen  254 ----------------------------------CVKIFQGHI-----H------NFEKNLLKCSWSPNGTKITAGSADR  288 (338)
T ss_pred             ----------------------------------eEEEeecch-----h------hhhhhcceeeccCCCCccccccccc
Confidence                                              111111000     0      1123456789999999999999999


Q ss_pred             cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579          447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (809)
Q Consensus       447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw  501 (809)
                      .+++||..+...+..++        +|.+.|.+++|+|....+.+++.|.+|.+=
T Consensus       289 ~vyvwd~~~r~~lyklp--------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  289 FVYVWDTTSRRILYKLP--------GHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             eEEEeecccccEEEEcC--------CcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            99999999888777775        999999999999999999999999998763

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.5e-34  Score=276.67  Aligned_cols=282  Identities=20%  Similarity=0.327  Sum_probs=244.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee
Q 003579          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (809)
Q Consensus       180 ~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~  259 (809)
                      -..+|..+.|.|+|+.|++|+..|.+.+||..+- ....+.+.|..+|.++.|+++|. .+++|+.+|.|++|+..-...
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnnV  172 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNNV  172 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchhhh
Confidence            3568999999999999999999999999997422 22233355689999999999999 999999999999999865543


Q ss_pred             eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEE
Q 003579          260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (809)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~  339 (809)
                       ..+..+|...|++++|+|+...+++++.||+|+|||+.....    .+.+.||.-.|.++.|+|....++++|.|..|+
T Consensus       173 -k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVK  247 (464)
T KOG0284|consen  173 -KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVK  247 (464)
T ss_pred             -HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCccceeEEccCCceeE
Confidence             444436679999999999999999999999999999877643    344479999999999999888999999999999


Q ss_pred             EEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeec
Q 003579          340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  419 (809)
Q Consensus       340 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  419 (809)
                      +||.+++.++..+.                                                                  
T Consensus       248 lWDprSg~cl~tlh------------------------------------------------------------------  261 (464)
T KOG0284|consen  248 LWDPRSGSCLATLH------------------------------------------------------------------  261 (464)
T ss_pred             eecCCCcchhhhhh------------------------------------------------------------------
Confidence            99999887765542                                                                  


Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeE
Q 003579          420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDI  498 (809)
Q Consensus       420 ~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i  498 (809)
                        .|+..|..+.|++++++|++++.|..+++||+++.+.+..+.        +|...|++++|+|-. .++.+++.||.|
T Consensus       262 --~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r--------~Hkkdv~~~~WhP~~~~lftsgg~Dgsv  331 (464)
T KOG0284|consen  262 --GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR--------GHKKDVTSLTWHPLNESLFTSGGSDGSV  331 (464)
T ss_pred             --hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh--------cchhhheeeccccccccceeeccCCCce
Confidence              466899999999999999999999999999999888777775        999999999999965 678899999999


Q ss_pred             EEEECCCCceeeeeec--CCCeEEEEEeeCCCEEEEEeCCCeEEEEEc
Q 003579          499 KVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (809)
Q Consensus       499 ~iwd~~~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~d~~I~v~d~  544 (809)
                      ..|.+...+++..+..  ...|++++|+|-|.+||+|+.|.++++|.-
T Consensus       332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            9999987777766654  489999999999999999999999999964

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=271.07  Aligned_cols=290  Identities=16%  Similarity=0.266  Sum_probs=234.9

Q ss_pred             eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE---EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (809)
Q Consensus       173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I  249 (809)
                      ..+.+..|...|.-+.||++|++||+++.|.+..+|.+..+..   ..++.+| ..+|..+.||||.+ +|++++.+..+
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wSPDdr-yLlaCg~~e~~  293 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWSPDDR-YLLACGFDEVL  293 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEECCCCC-eEEecCchHhe
Confidence            3456788999999999999999999999999999999987665   5555555 78999999999999 77778878889


Q ss_pred             EEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCC-CCCCeeEEEecCCCE
Q 003579          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGRH  328 (809)
Q Consensus       250 ~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~  328 (809)
                      .+||..+|.....+..+|...+.+++|.|||..+++|+.|+++..|+++...     +....+- ...|.+++..+||++
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-----hhcccccccceeEEEEEcCCCcE
Confidence            9999999999999887778899999999999999999999999999887652     2222222 234677777777777


Q ss_pred             EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (809)
Q Consensus       329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (809)
                      +++.+.|..+++++.....                                                             
T Consensus       369 vl~v~~d~~i~l~~~e~~~-------------------------------------------------------------  387 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARV-------------------------------------------------------------  387 (519)
T ss_pred             EEEEecccceeeechhhhh-------------------------------------------------------------
Confidence            7777777777777653321                                                             


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (809)
                                                                       .+..         .....+|+++.++.++++
T Consensus       388 -------------------------------------------------dr~l---------ise~~~its~~iS~d~k~  409 (519)
T KOG0293|consen  388 -------------------------------------------------DRGL---------ISEEQPITSFSISKDGKL  409 (519)
T ss_pred             -------------------------------------------------hhcc---------ccccCceeEEEEcCCCcE
Confidence                                                             1111         133467888888888888


Q ss_pred             EEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEee-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEE
Q 003579          489 MISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC  564 (809)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~-~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~  564 (809)
                      +++.-.+..+++||++..+++..+.++   .-+..-||.- +..++|+|++|+.|+||+..+++++.++.||...|++++
T Consensus       410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS  489 (519)
T ss_pred             EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence            888888888999999888777777655   3344445544 558999999999999999999999999999999999999


Q ss_pred             ECCCC-CEEEEEeCCCeEEEEEcCC
Q 003579          565 FSEDG-KWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       565 fspdg-~~l~s~s~D~~I~vwd~~~  588 (809)
                      |+|.. .++|+||.||+||||-...
T Consensus       490 wNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  490 WNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCHHHhhccCCCCeEEEecCCc
Confidence            99954 6789999999999998653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.3e-34  Score=280.65  Aligned_cols=288  Identities=20%  Similarity=0.333  Sum_probs=255.0

Q ss_pred             eeeeeeecccccceEEEEEec-CCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC
Q 003579          258 RLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (809)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (809)
                      +.+..+. +|...|+++.|.| .+.+|++++.|+.|++|++-..   .++++++.||..+|..++|+++|..+++++.|+
T Consensus       205 k~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  205 KLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             hheeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            4455666 9999999999999 8889999999999999998763   379999999999999999999999999999999


Q ss_pred             CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeeccee
Q 003579          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (809)
Q Consensus       337 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (809)
                      .+++||++++++...+..                                                              
T Consensus       281 ~lKlwDtETG~~~~~f~~--------------------------------------------------------------  298 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHL--------------------------------------------------------------  298 (503)
T ss_pred             eeeeeccccceEEEEEec--------------------------------------------------------------
Confidence            999999999987766543                                                              


Q ss_pred             eecCCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCc
Q 003579          417 LRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  495 (809)
Q Consensus       417 ~~~~~~~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  495 (809)
                             ...++++.+.|++ +.+++|+.|+.|+.||+++++.+..+.        .|-+.|..+.|-++|+++++++.|
T Consensus       299 -------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  299 -------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------RHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             -------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------hhhhheeeeEEccCCceEeeeccC
Confidence                   1567899999999 899999999999999999999999886        899999999999999999999999


Q ss_pred             CeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC---eEEEEEecCC--CCeeeEEECCC
Q 003579          496 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHT--DRITDFCFSED  568 (809)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~---~~~~~~~~h~--~~I~~l~fspd  568 (809)
                      +.++||+.....++..+...  ....++..+|+++++++-+.|+.|.++.+...   ...+.|.||.  +.-..+.||||
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence            99999999988776655433  56778999999999999999999999986543   2345688886  45667899999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCccEEEEeeeC-cceEEEEEcCCC-CeEEEEEeCCCeEEEee
Q 003579          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNM-DVLATAHVDQNGVYLWV  627 (809)
Q Consensus       569 g~~l~s~s~D~~I~vwd~~~~~~i~~~~~~-~~v~~l~~spdg-~~lat~~~d~~~i~lW~  627 (809)
                      |++|++|+.||.+.+||..+-+++..+..| .+|..+.|+|.. ..+||++.|| .|++|+
T Consensus       444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G-~Ikiwd  503 (503)
T KOG0282|consen  444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG-LIKIWD  503 (503)
T ss_pred             CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc-eeEecC
Confidence            999999999999999999999999999887 569999999954 5799999999 599996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2e-33  Score=252.95  Aligned_cols=290  Identities=19%  Similarity=0.331  Sum_probs=258.8

Q ss_pred             EEEcCCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579          175 YEFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (809)
Q Consensus       175 ~~~~~~~~~I~~l~~sp---~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i  251 (809)
                      .+-.+|..+|..++|||   +|-+|++++.||.-.+-+-++|.-+.+|.+| ++.|.+.+...+.. ..|+++.|-+-++
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfegh-kgavw~~~l~~na~-~aasaaadftakv   85 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH-KGAVWSATLNKNAT-RAASAAADFTAKV   85 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeecc-CcceeeeecCchhh-hhhhhcccchhhh
Confidence            45578999999999985   8889999999999999999999999999987 99999999998877 7889999999999


Q ss_pred             EECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEE
Q 003579          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (809)
Q Consensus       252 wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (809)
                      ||.-+|..+..+.  |..-|.+++|+.|.++|++|+.+..+|+++++.....   .....+|.+.|..+.|....+.+++
T Consensus        86 w~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   86 WDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDKCILS  160 (334)
T ss_pred             hhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCceEEe
Confidence            9999999999986  8889999999999999999999999999999887644   3445799999999999999999999


Q ss_pred             EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (809)
Q Consensus       332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (809)
                      ++.|++||+||.+++...+.+                                                           
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL-----------------------------------------------------------  181 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSL-----------------------------------------------------------  181 (334)
T ss_pred             eccCCceEEEEeccCcEEEEE-----------------------------------------------------------
Confidence            999999999998877554433                                                           


Q ss_pred             ecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE
Q 003579          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (809)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (809)
                                                                                  ..+.+|+++.++++|+++.+
T Consensus       182 ------------------------------------------------------------~~~s~VtSlEvs~dG~ilTi  201 (334)
T KOG0278|consen  182 ------------------------------------------------------------EFNSPVTSLEVSQDGRILTI  201 (334)
T ss_pred             ------------------------------------------------------------ecCCCCcceeeccCCCEEEE
Confidence                                                                        23456778888888876654


Q ss_pred             EeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE-ecCCCCeeeEEECCCCC
Q 003579          492 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGK  570 (809)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~  570 (809)
                      + ..+.|++||.++-.+++.++....|.+..++|+...+++|+.|+.++.||..+++.+..+ +||.++|.++.|+|||.
T Consensus       202 a-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  202 A-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             e-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence            4 457899999999999999999999999999999999999999999999999999998886 89999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCccE
Q 003579          571 WLLSSGMDGSLRIWDVILARQ  591 (809)
Q Consensus       571 ~l~s~s~D~~I~vwd~~~~~~  591 (809)
                      ..++||+||+||+|-...++.
T Consensus       281 ~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             eeeccCCCceEEEEEecCCCc
Confidence            999999999999998765543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.8e-29  Score=254.45  Aligned_cols=500  Identities=16%  Similarity=0.236  Sum_probs=358.4

Q ss_pred             cccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCC-ccccEEEEeCCCCCCEEEEEeCCCeEEEEe
Q 003579           91 RHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWN  167 (809)
Q Consensus        91 ~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd  167 (809)
                      -...+|++|++  ..+.||.+-.+|.|.+|++...-..   ...+.++. ..+-..+|.+.   .+|.+.+.+|.|.-||
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~---~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwD   96 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL---EPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWD   96 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCcee---eEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEe
Confidence            34567999998  4677999989999999999885441   33444443 44556667744   5899999999999999


Q ss_pred             CCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEec-cCCCcEEEEEEecCCCCEEEEEcCC
Q 003579          168 ISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASS  246 (809)
Q Consensus       168 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~V~~l~fs~dg~~~lasg~~d  246 (809)
                      +.+++..+.+....+.|.+++.+|.++.+++|+.||.+..++...++....... ..++.|.+++|+|++. .+++|+.|
T Consensus        97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~D  175 (691)
T KOG2048|consen   97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSID  175 (691)
T ss_pred             cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccC
Confidence            999999999999999999999999999999999999888888877776554432 2258999999999998 89999999


Q ss_pred             CcEEEEECCCceeeeeee-------cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCee
Q 003579          247 GVISIWNLEKRRLQSVIR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (809)
Q Consensus       247 g~I~iwdl~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (809)
                      |.|++||..++..+....       .....-|+++.|..++ .+++|..-|+|++||....    .++.....|.+.|.+
T Consensus       176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~  250 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLA  250 (691)
T ss_pred             ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc----chhhhhhhhhcceeE
Confidence            999999999997766222       1123458899999766 7999999999999987766    577888899999999


Q ss_pred             EEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579          320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (809)
Q Consensus       320 i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (809)
                      ++..+++.+++++|.|+.+..+...+....-...             ....++...+.+++..+       +.+..+..+
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~-------------~~r~~h~hdvrs~av~~-------~~l~sgG~d  310 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN-------------SRRDLHAHDVRSMAVIE-------NALISGGRD  310 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCccceeee-------------ccccCCcccceeeeeec-------ceEEeccee
Confidence            9999999999999999999988876654311100             00111112222222221       244444444


Q ss_pred             ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccc-cccCccccEE
Q 003579          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER-SNYAHNGEVV  478 (809)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~h~~~v~  478 (809)
                      ..+.+-.........+. .+..   .+-.+.....-.+++++--....+.+|.+.+......+...... ........|.
T Consensus       311 ~~l~i~~s~~~~~~~h~-~~~~---~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs  386 (691)
T KOG2048|consen  311 FTLAICSSREFKNMDHR-QKNL---FPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENIS  386 (691)
T ss_pred             eEEEEccccccCchhhh-cccc---ccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcccee
Confidence            45544444443333333 1111   12222333334466777777778888888777444322211000 0123456799


Q ss_pred             EEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC------CCeEEEEEeeCCCEEEEEe-CCCeEEEEEcCCCeE--
Q 003579          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRM--  549 (809)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~-~d~~I~v~d~~~~~~--  549 (809)
                      +.+++|+|++++.+.- ..+++|.++....+......      -....+.|+-|+..++.++ ++..+.+++.++...  
T Consensus       387 ~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke  465 (691)
T KOG2048|consen  387 CAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE  465 (691)
T ss_pred             eeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence            9999999999987765 56788887754333333222      4677888999988888877 778888888876532  


Q ss_pred             EEEEe--cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEe-eeCcceEEEEEcC-CCCeEEEEEeCCCeEEE
Q 003579          550 VRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSP-NMDVLATAHVDQNGVYL  625 (809)
Q Consensus       550 ~~~~~--~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~-~~~~~v~~l~~sp-dg~~lat~~~d~~~i~l  625 (809)
                      +..+.  +....|+.+..||||+|||+.+.+|.|.+|++.+++.-... +....++.++|+| +...|+.++.++ .++=
T Consensus       466 l~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~n-Qv~e  544 (691)
T KOG2048|consen  466 LKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNN-QVFE  544 (691)
T ss_pred             hhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCC-eEEE
Confidence            22222  34578999999999999999999999999999987665444 4557799999995 667788888887 5888


Q ss_pred             eec
Q 003579          626 WVN  628 (809)
Q Consensus       626 W~~  628 (809)
                      +++
T Consensus       545 fdi  547 (691)
T KOG2048|consen  545 FDI  547 (691)
T ss_pred             Eec
Confidence            887

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.8e-31  Score=273.55  Aligned_cols=285  Identities=23%  Similarity=0.416  Sum_probs=251.3

Q ss_pred             eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (809)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~  340 (809)
                      ..+. +|.++|.+++|+|++++|++++.||.+++|+++...    ......+|...+..+.|+++++.+++++.|+.+++
T Consensus         3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i   77 (289)
T cd00200           3 RTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL   77 (289)
T ss_pred             hHhc-ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence            3455 899999999999999999999999999999987653    45566789999999999999999999999999999


Q ss_pred             EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (809)
Q Consensus       341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (809)
                      |++........+.                                                                   
T Consensus        78 ~~~~~~~~~~~~~-------------------------------------------------------------------   90 (289)
T cd00200          78 WDLETGECVRTLT-------------------------------------------------------------------   90 (289)
T ss_pred             EEcCcccceEEEe-------------------------------------------------------------------
Confidence            9987543222211                                                                   


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                       .+...+.++.++++++++++++.+|.+.+|++.++.....+.        .|...+.+++++|+++++++++.||.|++
T Consensus        91 -~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          91 -GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             -ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--------cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence             234689999999999999999889999999999887777664        78899999999999999988888999999


Q ss_pred             EECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCC
Q 003579          501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (809)
Q Consensus       501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~  579 (809)
                      ||+.+++....+..+ ..+.++.|+|+++.+++++.++.|++||+.+++.+..+.+|...|.+++|+|++.++++++.|+
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            999988888887766 5899999999999999999999999999999999999989999999999999999999988899


Q ss_pred             eEEEEEcCCccEEEEeeeCc-ceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          580 SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       580 ~I~vwd~~~~~~i~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                      .|++||+.+++.+..+..+. .+.+++|+|++.+|++++.|+ .|++|+
T Consensus       242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iw~  289 (289)
T cd00200         242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG-TIRIWD  289 (289)
T ss_pred             cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC-eEEecC
Confidence            99999999999888887554 599999999999999999999 599996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.2e-31  Score=256.14  Aligned_cols=306  Identities=22%  Similarity=0.363  Sum_probs=244.7

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCC---EEEEEcCCCcEEEEEeeCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~d~~i~vw~~~~~  300 (809)
                      .+.|.++...  ++ .+++|+.||.+++||. .|+...++. +|.++|.+++|.....   .+++++.|.++++|.++.+
T Consensus       105 dDWVSsv~~~--~~-~IltgsYDg~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  105 DDWVSSVKGA--SK-WILTGSYDGTSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             hhhhhhhccc--Cc-eEEEeecCCeeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            5788888877  44 7899999999999996 577777777 9999999888865444   5999999999999999988


Q ss_pred             CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (809)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (809)
                      ......+....||...|.+++..++|..+++|+.|..|.+|+..... ..++......++.+......            
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~------------  246 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKE------------  246 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccchhhhhhhhhhhc------------
Confidence            76666666777999999999999999999999999999999933221 11111111111110000000            


Q ss_pred             eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 003579          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (809)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (809)
                                                              .                                ..+....
T Consensus       247 ----------------------------------------~--------------------------------~~r~P~v  254 (423)
T KOG0313|consen  247 ----------------------------------------G--------------------------------GTRTPLV  254 (423)
T ss_pred             ----------------------------------------c--------------------------------cccCceE
Confidence                                                    0                                0011111


Q ss_pred             eeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 003579          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  540 (809)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~  540 (809)
                      .        +.+|..+|.++.|++ ...+.+++.|.+|+.||+.++....++.....+.++.++|..++||+|+.|..|+
T Consensus       255 t--------l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 T--------LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             E--------ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence            1        249999999999998 7789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCC---eEEEEEecCCCCeeeEEECCCCC-EEEEEeCCCeEEEEEcCCcc-EEEEeeeCc-ceEEEEEcCCCCeEE
Q 003579          541 LFDVVAL---RMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILAR-QIDAIHVDV-SITALSLSPNMDVLA  614 (809)
Q Consensus       541 v~d~~~~---~~~~~~~~h~~~I~~l~fspdg~-~l~s~s~D~~I~vwd~~~~~-~i~~~~~~~-~v~~l~~spdg~~la  614 (809)
                      +||.+++   -...+|.||.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+..|. .|.++.|+ ++.+++
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~Iv  404 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIV  404 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEE
Confidence            9999876   34678999999999999999665 57899999999999999877 777666555 49999997 577999


Q ss_pred             EEEeCCCeEEEeecCc
Q 003579          615 TAHVDQNGVYLWVNRC  630 (809)
Q Consensus       615 t~~~d~~~i~lW~~~~  630 (809)
                      +|+.|. .|+++.-..
T Consensus       405 SGGaD~-~l~i~~~~~  419 (423)
T KOG0313|consen  405 SGGADN-KLRIFKGSP  419 (423)
T ss_pred             eccCcc-eEEEecccc
Confidence            999999 599987543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.7e-33  Score=273.96  Aligned_cols=290  Identities=18%  Similarity=0.284  Sum_probs=245.0

Q ss_pred             CceEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCc
Q 003579          171 KKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (809)
Q Consensus       171 ~~~~~~~~~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~  248 (809)
                      .+.++.+.+|+..|+++.|.| .+.+|++++.|+.|+|||+-. +++++++.+| ..+|.+++|+++|. -+.+++.|+.
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~-~fLS~sfD~~  281 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGT-SFLSASFDRF  281 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCC-eeeeeeccee
Confidence            457788999999999999999 899999999999999999987 6788888776 89999999999999 7889999999


Q ss_pred             EEEEECCCceeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC
Q 003579          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (809)
Q Consensus       249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  327 (809)
                      |++||.++|+++..+.  ....+.++.|.|++ +.+++|+.|+.|+.||++.+    .+++....|-+.|..+.|.++|+
T Consensus       282 lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----kvvqeYd~hLg~i~~i~F~~~g~  355 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----KVVQEYDRHLGAILDITFVDEGR  355 (503)
T ss_pred             eeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----HHHHHHHhhhhheeeeEEccCCc
Confidence            9999999999999987  45678999999998 79999999999999999877    57777888999999999999999


Q ss_pred             EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEe
Q 003579          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (809)
Q Consensus       328 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (809)
                      ++++.+.|+++++|+...+...+.+.                                                      
T Consensus       356 rFissSDdks~riWe~~~~v~ik~i~------------------------------------------------------  381 (503)
T KOG0282|consen  356 RFISSSDDKSVRIWENRIPVPIKNIA------------------------------------------------------  381 (503)
T ss_pred             eEeeeccCccEEEEEcCCCccchhhc------------------------------------------------------
Confidence            99999999999999976543322110                                                      


Q ss_pred             eeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC
Q 003579          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (809)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (809)
                                                                                     ..+.....++..+|++.
T Consensus       382 ---------------------------------------------------------------~~~~hsmP~~~~~P~~~  398 (503)
T KOG0282|consen  382 ---------------------------------------------------------------DPEMHTMPCLTLHPNGK  398 (503)
T ss_pred             ---------------------------------------------------------------chhhccCcceecCCCCC
Confidence                                                                           02223345666777777


Q ss_pred             EEEEEeCcCeEEEEECCCCc---eeeeeec---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCee
Q 003579          488 LMISAGYHGDIKVWDFKGRD---LKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT  561 (809)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~---~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~  561 (809)
                      +++.-+.|..|.++.+...-   ....++.   .+-...+.|||||++|++|..||.+.+||.++-+++..+++|.+++.
T Consensus       399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci  478 (503)
T KOG0282|consen  399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI  478 (503)
T ss_pred             eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence            77777777777777654321   1222222   25667899999999999999999999999999999999999999999


Q ss_pred             eEEECCCC-CEEEEEeCCCeEEEEE
Q 003579          562 DFCFSEDG-KWLLSSGMDGSLRIWD  585 (809)
Q Consensus       562 ~l~fspdg-~~l~s~s~D~~I~vwd  585 (809)
                      .+.|+|.. ..+|||+.||.|++||
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            99999954 5789999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.8e-31  Score=289.26  Aligned_cols=290  Identities=22%  Similarity=0.396  Sum_probs=253.8

Q ss_pred             EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce--eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEE
Q 003579          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (809)
Q Consensus       217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~v  294 (809)
                      ..+..++...|.++.|+++|+ .+++++.++.+++|+....+  ....+. +|...|..++|+|++.++++++.|++|++
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEE
Confidence            344444467899999999999 79999999999999998777  666665 89999999999999999999999999999


Q ss_pred             EEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (809)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (809)
                      |++...   ...++.+.+|...|++++|+|+|+.+++|+.|++|++||+++++....+.                     
T Consensus       230 wd~~~~---~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---------------------  285 (456)
T KOG0266|consen  230 WDLKDD---GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK---------------------  285 (456)
T ss_pred             eeccCC---CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------
Confidence            988222   26788889999999999999999999999999999999998765544432                     


Q ss_pred             ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (809)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~  454 (809)
                                                                     +|...|++++|+++|+++++++.||.|++||+.
T Consensus       286 -----------------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  286 -----------------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             -----------------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence                                                           466899999999999999999999999999999


Q ss_pred             CCce--eeeeeCcccccccCccc--cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-C---CeEEEEEeeC
Q 003579          455 SGIS--RGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-C---SLVKIVYHRV  526 (809)
Q Consensus       455 ~~~~--~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~---~i~~~~~s~~  526 (809)
                      ++..  ...+.        .+..  .++.++|+|+++++++++.|+.+++||+..+.....+..+ .   .+.+...++.
T Consensus       319 ~~~~~~~~~~~--------~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  319 TGSKLCLKLLS--------GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             CCceeeeeccc--------CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence            9994  34443        3433  5999999999999999999999999999999888888665 2   4455566789


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEEecC-CCCeeeEEECCCCCEEEEEe--CCCeEEEEEcC
Q 003579          527 NGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI  587 (809)
Q Consensus       527 ~~~la~~~~d~~I~v~d~~~~~~~~~~~~h-~~~I~~l~fspdg~~l~s~s--~D~~I~vwd~~  587 (809)
                      +.++.+|+.|+.|++||+.++..+..+.+| ...+..+.++|...++++++  .|+.+++|..+
T Consensus       391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999999999999999999999 89999999999999999998  79999999754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.9e-34  Score=268.72  Aligned_cols=366  Identities=17%  Similarity=0.254  Sum_probs=288.6

Q ss_pred             EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (809)
Q Consensus       217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~  296 (809)
                      ..+. +|.+.|.|++=+|.....+++|+.||.|+|||+.+..+...+. +|.+.|.++++..  ..++++|.|++|+.|.
T Consensus        60 ~~L~-gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   60 GSLD-GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hhcc-ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeee
Confidence            3443 3488899999999875589999999999999999999999999 9999999999987  5789999999999998


Q ss_pred             eeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (809)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (809)
                      ++..     .++++.+ ...+..+..+..+..++|||.+  |.+||.....+...++                       
T Consensus       136 ~~~~-----p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~sms-----------------------  184 (433)
T KOG0268|consen  136 IDGP-----PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMS-----------------------  184 (433)
T ss_pred             ccCC-----cceeeec-cccccccccccccccccccCce--eeecccccCCccceee-----------------------
Confidence            7763     3333333 2335566666666677777764  7778765443322221                       


Q ss_pred             eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003579          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (809)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~  456 (809)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (433)
T KOG0268|consen  185 --------------------------------------------------------------------------------  184 (433)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeC
Q 003579          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  535 (809)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~  535 (809)
                                     --...|.++.|+|.. ..|++|+.|+.|.+||++++.+++.+......+.++|+|.+-.+.+|++
T Consensus       185 ---------------wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  185 ---------------WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             ---------------cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccc
Confidence                           223557788888865 5677788999999999999999999999999999999998888999999


Q ss_pred             CCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCc--ceEEEEEcCCCCe
Q 003579          536 DLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV--SITALSLSPNMDV  612 (809)
Q Consensus       536 d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~--~v~~l~~spdg~~  612 (809)
                      |..++.||++.. +++....+|.+.|.+++|||.|+-+++||.|.+||||.+..+..-+.++...  .|.++.||.|.+|
T Consensus       250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky  329 (433)
T KOG0268|consen  250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY  329 (433)
T ss_pred             cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence            999999999865 5678889999999999999999999999999999999999988877776543  4999999999999


Q ss_pred             EEEEEeCCCeEEEeecCcccCCCCCCccCCCCCcceeecCCCccCcCCccCCCCCCCCCccCCCCCCCCCCCCCcccccc
Q 003579          613 LATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIP  692 (809)
Q Consensus       613 lat~~~d~~~i~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (809)
                      +++|+.|++ |+||.-++.-...                             .....|+..-+..|...+.|...++|..
T Consensus       330 i~SGSdd~n-vRlWka~Aseklg-----------------------------v~t~rEk~~~~Y~e~Lke~y~~~peIkR  379 (433)
T KOG0268|consen  330 IISGSDDGN-VRLWKAKASEKLG-----------------------------VITPREKNKLEYNEALKERYKHLPEIKR  379 (433)
T ss_pred             EEecCCCcc-eeeeecchhhhcC-----------------------------CCChhHHHHHHHHHHHHHHHhhcHHHHH
Confidence            999999996 9999865321110                             0111112222333444467777777765


Q ss_pred             CceeccCCchhhHhhccchHhhhhhCCCCCCCCCCCCCCcccccCCCCCcccc
Q 003579          693 DLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEIL  745 (809)
Q Consensus       693 ~l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~  745 (809)
                       +.....||+....++-...++++..+.+|+..+.++.|  .|..++.+...+
T Consensus       380 -IarHR~lPk~i~~a~ki~r~~~~s~~rrea~~~~~~~~--~~y~~~~kk~vv  429 (433)
T KOG0268|consen  380 -IARHRHLPKPIKKAQKIKRTVNDSERRREANRRRHSKP--VPYAPERKKHIV  429 (433)
T ss_pred             -HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcchhhcceee
Confidence             88899999999988888888888888888888888888  888887655443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-31  Score=237.18  Aligned_cols=285  Identities=20%  Similarity=0.394  Sum_probs=243.8

Q ss_pred             EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEE
Q 003579          216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW  295 (809)
Q Consensus       216 ~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw  295 (809)
                      +..+..+ +++|.++.|+-||+ +.++++.|.+|++||...+.++++.. +|...|..++.+.|+..+++++.|..+.+|
T Consensus        10 ~~~l~~~-qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   10 LSILDCA-QGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             ceeeccc-ccceEEEEEccCCC-EEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEE
Confidence            3344444 88999999999999 78888899999999999999999999 999999999999999999999999999999


Q ss_pred             EeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCc
Q 003579          296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  375 (809)
Q Consensus       296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (809)
                      |++++    +..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++.....                         
T Consensus        87 DV~TG----kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-------------------------  137 (307)
T KOG0316|consen   87 DVNTG----KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-------------------------  137 (307)
T ss_pred             EcccC----eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-------------------------
Confidence            99887    7889999999999999999999999999999999999986543210                         


Q ss_pred             eeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003579          376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (809)
Q Consensus       376 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~  455 (809)
                                                                         |                     .++    
T Consensus       138 ---------------------------------------------------i---------------------Qil----  141 (307)
T KOG0316|consen  138 ---------------------------------------------------I---------------------QIL----  141 (307)
T ss_pred             ---------------------------------------------------c---------------------chh----
Confidence                                                               0                     000    


Q ss_pred             CceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeC
Q 003579          456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  535 (809)
Q Consensus       456 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~  535 (809)
                                     ......|.++.+.  +..+++|+.||+++.||++.|++...+ ...+|+++.|+++++...+++-
T Consensus       142 ---------------dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  142 ---------------DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             ---------------hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeec
Confidence                           1334556666664  456889999999999999988765433 4579999999999999999999


Q ss_pred             CCeEEEEEcCCCeEEEEEecCCCC--eeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc--eEEEEEcCCCC
Q 003579          536 DLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMD  611 (809)
Q Consensus       536 d~~I~v~d~~~~~~~~~~~~h~~~--I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~--v~~l~~spdg~  611 (809)
                      |+++++.|-.+|+++..++||.+.  =.+.+++.....+++||+||.|++||+.++..+..+..++.  +++++++|.-.
T Consensus       204 ~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~  283 (307)
T KOG0316|consen  204 DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD  283 (307)
T ss_pred             cceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence            999999999999999999999865  34567888888999999999999999999999999988775  79999999998


Q ss_pred             eEEEEEeCCCeEEEeec
Q 003579          612 VLATAHVDQNGVYLWVN  628 (809)
Q Consensus       612 ~lat~~~d~~~i~lW~~  628 (809)
                      .+.++...+  +..|.-
T Consensus       284 ~f~~A~~~~--~~~~~~  298 (307)
T KOG0316|consen  284 DFITATGHG--DLFWYQ  298 (307)
T ss_pred             ceeEecCCc--eeceee
Confidence            888887654  788863

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.9e-31  Score=285.96  Aligned_cols=286  Identities=23%  Similarity=0.417  Sum_probs=250.9

Q ss_pred             ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeee
Q 003579          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  345 (809)
                      .|...|.++.|+++|..+++++.|+.+++|+......  ..++.+.+|...|.+++|+|+++++++++.|+++++||+..
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~  234 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD  234 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence            4478899999999999999999999999998854432  35666689999999999999999999999999999999833


Q ss_pred             cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (809)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (809)
                      ..                                                                   ..+....+|..
T Consensus       235 ~~-------------------------------------------------------------------~~~~~l~gH~~  247 (456)
T KOG0266|consen  235 DG-------------------------------------------------------------------RNLKTLKGHST  247 (456)
T ss_pred             CC-------------------------------------------------------------------eEEEEecCCCC
Confidence            21                                                                   11222336789


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC
Q 003579          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  505 (809)
                      .|++++|+|+|+.+++|+.|+.|++||+.++.....+.        +|...|++++|++++.++++++.|+.|++||+.+
T Consensus       248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~  319 (456)
T KOG0266|consen  248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET  319 (456)
T ss_pred             ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee--------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCC
Confidence            99999999999999999999999999999999999886        9999999999999999999999999999999999


Q ss_pred             Cc--eeeeeecC--C-CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC---eeeEEECCCCCEEEEEeC
Q 003579          506 RD--LKSRWEVG--C-SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR---ITDFCFSEDGKWLLSSGM  577 (809)
Q Consensus       506 ~~--~~~~~~~~--~-~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~---I~~l~fspdg~~l~s~s~  577 (809)
                      +.  +...+...  . +++++.|+|++.++++++.|+.+++||+..++.+..+.+|...   +.+..+++.++++++++.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~  399 (456)
T KOG0266|consen  320 GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE  399 (456)
T ss_pred             CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence            99  44555443  2 6899999999999999999999999999999999999999874   445566889999999999


Q ss_pred             CCeEEEEEcCCccEEEEeeeC--cceEEEEEcCCCCeEEEEE--eCCCeEEEeecC
Q 003579          578 DGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAH--VDQNGVYLWVNR  629 (809)
Q Consensus       578 D~~I~vwd~~~~~~i~~~~~~--~~v~~l~~spdg~~lat~~--~d~~~i~lW~~~  629 (809)
                      |+.|++||+.++..+..+..|  ..+..+.++|...++++++  .|+ .+++|..+
T Consensus       400 d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~-~~~~w~~~  454 (456)
T KOG0266|consen  400 DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG-LIRLWKYD  454 (456)
T ss_pred             CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc-eEEEecCC
Confidence            999999999999999888887  4589999999999999998  566 59999754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.3e-30  Score=302.76  Aligned_cols=301  Identities=15%  Similarity=0.272  Sum_probs=238.6

Q ss_pred             CCeEEEEeCCCCceEEEE-----cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC----e----EEEEEeccCCCc
Q 003579          160 EGSLQLWNISTKKKLYEF-----KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD----E----ELVTFTHSMRGA  226 (809)
Q Consensus       160 dg~i~lwd~~~~~~~~~~-----~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~----~----~~~~~~~~~~~~  226 (809)
                      +|.+++|+..+.+....+     ..|...|.+++|+|+++++|+|+.|+.|+|||+...    .    ....+..  ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~  534 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSK  534 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCc
Confidence            567888888776654443     358999999999999999999999999999997532    1    1222322  467


Q ss_pred             EEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-CCCEEEEEcCCCcEEEEEeeCCCCCce
Q 003579          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPR  305 (809)
Q Consensus       227 V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~vw~~~~~~~~~~  305 (809)
                      +.+++|++....+|++++.||.|++||+.+++.+..+. +|.+.|++++|+| ++.+|++|+.|+.|++||+...    .
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~  609 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----V  609 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----c
Confidence            99999998644489999999999999999999888887 8999999999997 7889999999999999998754    3


Q ss_pred             eEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579          306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (809)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  384 (809)
                      .+..+..+ ..+.++.|.+ +|.+|++|+.||.|++||++.....                                   
T Consensus       610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~-----------------------------------  653 (793)
T PLN00181        610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP-----------------------------------  653 (793)
T ss_pred             EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc-----------------------------------
Confidence            34444433 5788888854 7888999999999999987532100                                   


Q ss_pred             cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeC
Q 003579          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  464 (809)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~  464 (809)
                                                                                                ...+  
T Consensus       654 --------------------------------------------------------------------------~~~~--  657 (793)
T PLN00181        654 --------------------------------------------------------------------------LCTM--  657 (793)
T ss_pred             --------------------------------------------------------------------------ceEe--
Confidence                                                                                      0001  


Q ss_pred             cccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC------ceeeeeecC-CCeEEEEEeeCCCEEEEEeCCC
Q 003579          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG-CSLVKIVYHRVNGLLATVADDL  537 (809)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~  537 (809)
                            .+|...|.++.|. ++.++++++.|+.|++||+..+      .++..+..+ ..+..++|++++.+||+|+.|+
T Consensus       658 ------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~  730 (793)
T PLN00181        658 ------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN  730 (793)
T ss_pred             ------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence                  2788888889886 6778999999999999998743      455566544 6788999999999999999999


Q ss_pred             eEEEEEcCCCeEEEEE-------------ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579          538 VIRLFDVVALRMVRKF-------------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       538 ~I~v~d~~~~~~~~~~-------------~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~  586 (809)
                      .|++|+......+..+             ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus       731 ~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        731 EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            9999998765443222             235567999999999999999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.9e-33  Score=260.72  Aligned_cols=286  Identities=22%  Similarity=0.371  Sum_probs=212.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~  260 (809)
                      ...|.|+.+..  ..+++|..|.+|+|||..+-.++..+.+| .+.|.|+.|..  + ++++|+.|.+|++||.++++++
T Consensus       197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqyd~--r-viisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQYDE--R-VIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             CCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeeccc--e-EEEecCCCceEEEEeccCCchh
Confidence            56789998864  46999999999999999998888888876 89999999964  4 8999999999999999999999


Q ss_pred             eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (809)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~  340 (809)
                      .++- +|...|..+.|+.  .++++++.|.++.+|++..+. ...+.+.+.||.+.|+.+.|+  .+++++++.|++|++
T Consensus       271 ~tli-hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv  344 (499)
T KOG0281|consen  271 NTLI-HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV  344 (499)
T ss_pred             hHHh-hhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence            9998 8999999999974  489999999999999998876 445667778999999999996  569999999999999


Q ss_pred             EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (809)
Q Consensus       341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (809)
                      |++.+....+.+.                                                                   
T Consensus       345 W~~st~efvRtl~-------------------------------------------------------------------  357 (499)
T KOG0281|consen  345 WSTSTCEFVRTLN-------------------------------------------------------------------  357 (499)
T ss_pred             Eeccceeeehhhh-------------------------------------------------------------------
Confidence            9987765544332                                                                   


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                       +|...|.|+.+  .|+++++|++|.+|++||+..|.....+.        +|..-|.++.|  +++.+++|+.||+|++
T Consensus       358 -gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe--------GHEeLvRciRF--d~krIVSGaYDGkikv  424 (499)
T KOG0281|consen  358 -GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--------GHEELVRCIRF--DNKRIVSGAYDGKIKV  424 (499)
T ss_pred             -cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh--------chHHhhhheee--cCceeeeccccceEEE
Confidence             22233333322  34555555555555555555555555443        55555555555  3555555555555555


Q ss_pred             EECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCe
Q 003579          501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS  580 (809)
Q Consensus       501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~  580 (809)
                      ||+..+...+.     +                           .+.-++..+..|+++|..+.|  |...+++++.|.+
T Consensus       425 Wdl~aaldpra-----~---------------------------~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddt  470 (499)
T KOG0281|consen  425 WDLQAALDPRA-----P---------------------------ASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDT  470 (499)
T ss_pred             EecccccCCcc-----c---------------------------ccchHHHhhhhccceeEEEee--cceEEEeccCCCe
Confidence            55443321100     0                           001134556679999999999  5668999999999


Q ss_pred             EEEEEcCCccEE
Q 003579          581 LRIWDVILARQI  592 (809)
Q Consensus       581 I~vwd~~~~~~i  592 (809)
                      |.|||..++..-
T Consensus       471 ILiWdFl~~~~~  482 (499)
T KOG0281|consen  471 ILIWDFLNGPPS  482 (499)
T ss_pred             EEEEEcCCCCcc
Confidence            999999887544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.6e-32  Score=258.19  Aligned_cols=270  Identities=21%  Similarity=0.383  Sum_probs=228.5

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      ...|+|+.+.. +  .+++|..|.+|+|||.++..++..+. +|++.|.|+.|.  .+.+++|+.|.+|++||++++   
T Consensus       197 skgVYClQYDD-~--kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg---  267 (499)
T KOG0281|consen  197 SKGVYCLQYDD-E--KIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG---  267 (499)
T ss_pred             CCceEEEEecc-h--hhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCC---
Confidence            45799999863 3  58999999999999999999999998 999999999985  569999999999999999887   


Q ss_pred             ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecc
Q 003579          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (809)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  383 (809)
                       +++..+-+|...|..+.|+  ..++++++.|+++.+||+.......-                                
T Consensus       268 -e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~--------------------------------  312 (499)
T KOG0281|consen  268 -EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITL--------------------------------  312 (499)
T ss_pred             -chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHH--------------------------------
Confidence             6778888999999999997  44999999999999999865431110                                


Q ss_pred             ccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee
Q 003579          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  463 (809)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~  463 (809)
                                                                                                 +..  
T Consensus       313 ---------------------------------------------------------------------------rrV--  315 (499)
T KOG0281|consen  313 ---------------------------------------------------------------------------RRV--  315 (499)
T ss_pred             ---------------------------------------------------------------------------HHH--
Confidence                                                                                       000  


Q ss_pred             CcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 003579          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLF  542 (809)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~  542 (809)
                            +.+|..+|+.+.|+  .+++++++.|.+|++|++.+++.++++..+ ..|.|+.+.  ++++++|+.|.+|++|
T Consensus       316 ------LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlw  385 (499)
T KOG0281|consen  316 ------LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW  385 (499)
T ss_pred             ------Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEE
Confidence                  13899999999886  459999999999999999999999999877 678777774  8999999999999999


Q ss_pred             EcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEE---------EEe-eeCcceEEEEEcCCCCe
Q 003579          543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI---------DAI-HVDVSITALSLSPNMDV  612 (809)
Q Consensus       543 d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i---------~~~-~~~~~v~~l~~spdg~~  612 (809)
                      |++.|.+++.++||..-|.++.|  |.+.+++|+.||+|+|||+..+..-         ... ++...|..+.|  |...
T Consensus       386 di~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fq  461 (499)
T KOG0281|consen  386 DIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQ  461 (499)
T ss_pred             eccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceE
Confidence            99999999999999999999999  5678999999999999999876422         222 23446999999  5667


Q ss_pred             EEEEEeCCCeEEEeecC
Q 003579          613 LATAHVDQNGVYLWVNR  629 (809)
Q Consensus       613 lat~~~d~~~i~lW~~~  629 (809)
                      +++++.|. +|-+|+.-
T Consensus       462 IvsssHdd-tILiWdFl  477 (499)
T KOG0281|consen  462 IISSSHDD-TILIWDFL  477 (499)
T ss_pred             EEeccCCC-eEEEEEcC
Confidence            77777777 69999953

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-30  Score=231.11  Aligned_cols=284  Identities=15%  Similarity=0.219  Sum_probs=246.5

Q ss_pred             eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (809)
Q Consensus       173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw  252 (809)
                      ..+.+..++++|.++.|.-+|+|.++++.|.+|++||...+..++++..| ...|..++.+.|+. -+++|+.|..+.+|
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dns-kf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDNS-KFASCGGDKAVQVW   86 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-Cceeeecccccccc-ccccCCCCceEEEE
Confidence            45677899999999999999999999999999999999999999999887 77899999999988 78999999999999


Q ss_pred             ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (809)
Q Consensus       253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (809)
                      |+++|+..+.++ +|.+.|+.+.|+.+...+++|+.|.++++||-.....  .+++.+......|.++...  +..|+.|
T Consensus        87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~--~heIvaG  161 (307)
T KOG0316|consen   87 DVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVA--EHEIVAG  161 (307)
T ss_pred             EcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEec--ccEEEee
Confidence            999999999999 9999999999999999999999999999998876644  5567777778889888875  6689999


Q ss_pred             ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (809)
Q Consensus       333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  412 (809)
                      +.||++|.||++.+......                                                            
T Consensus       162 S~DGtvRtydiR~G~l~sDy------------------------------------------------------------  181 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSSDY------------------------------------------------------------  181 (307)
T ss_pred             ccCCcEEEEEeecceeehhh------------------------------------------------------------
Confidence            99999999999877543322                                                            


Q ss_pred             cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEE--EEEEcCCCCEEE
Q 003579          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV--GVACDSTNTLMI  490 (809)
Q Consensus       413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~~l~  490 (809)
                                ...+|++++++++|+..++++-++++++.|-.+|+.+..+.        +|...-.  ..+++.....++
T Consensus       182 ----------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk--------Ghkn~eykldc~l~qsdthV~  243 (307)
T KOG0316|consen  182 ----------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK--------GHKNMEYKLDCCLNQSDTHVF  243 (307)
T ss_pred             ----------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc--------ccccceeeeeeeecccceeEE
Confidence                      22789999999999999999999999999999999999986        8876543  445566678999


Q ss_pred             EEeCcCeEEEEECCCCceeeeeecCCC--eEEEEEeeCCCEEEEEeCCCeEEEE
Q 003579          491 SAGYHGDIKVWDFKGRDLKSRWEVGCS--LVKIVYHRVNGLLATVADDLVIRLF  542 (809)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~~~~s~~~~~la~~~~d~~I~v~  542 (809)
                      +|+.||.|.+||+.....+..+...+.  +..+.++|.-..++++... .+..|
T Consensus       244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~  296 (307)
T KOG0316|consen  244 SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW  296 (307)
T ss_pred             eccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence            999999999999999999999887743  6889999987767666543 34444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=1.1e-29  Score=297.17  Aligned_cols=303  Identities=12%  Similarity=0.173  Sum_probs=243.6

Q ss_pred             CCcEEEEECCCceeeeeeec----ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC----ceeEEeccCCCCCC
Q 003579          246 SGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP  317 (809)
Q Consensus       246 dg~I~iwdl~~~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~----~~~~~~~~~h~~~v  317 (809)
                      +|.+++|+..+.+....+..    .|.+.|.+++|+|++.+|++|+.|+.|++|++......    ....... .+...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence            67788888877655444332    48999999999999999999999999999987542111    1112222 234678


Q ss_pred             eeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579          318 LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (809)
Q Consensus       318 ~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (809)
                      .+++|++ ++.+|++++.||+|++||+.+.+....                                             
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~---------------------------------------------  570 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE---------------------------------------------  570 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------------------
Confidence            9999987 578999999999999999865432222                                             


Q ss_pred             cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccc
Q 003579          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (809)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (809)
                                             ..+|...|.+++|+| +++++++|+.||.|++||+.++.....+.         +..
T Consensus       571 -----------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---------~~~  618 (793)
T PLN00181        571 -----------------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---------TKA  618 (793)
T ss_pred             -----------------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---------cCC
Confidence                                   124668899999996 78999999999999999999988777663         335


Q ss_pred             cEEEEEEc-CCCCEEEEEeCcCeEEEEECCCCc-eeeeee-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC------
Q 003579          476 EVVGVACD-STNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------  546 (809)
Q Consensus       476 ~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~------  546 (809)
                      .+.++.|+ +++.++++|+.||.|++||+.+.+ ....+. +...|.++.|. ++.++++++.|+.|++||+..      
T Consensus       619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence            78999995 578999999999999999998765 344444 44789999997 688999999999999999974      


Q ss_pred             CeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee--------------eCcceEEEEEcCCCCe
Q 003579          547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--------------VDVSITALSLSPNMDV  612 (809)
Q Consensus       547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~--------------~~~~v~~l~~spdg~~  612 (809)
                      .+.+..+.+|...++.++|+|++++|++|+.|+.|++|+......+..+.              +...|.+++|+|++..
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence            36788999999999999999999999999999999999987665443321              1224999999999999


Q ss_pred             EEEEEeCCCeEEEeec
Q 003579          613 LATAHVDQNGVYLWVN  628 (809)
Q Consensus       613 lat~~~d~~~i~lW~~  628 (809)
                      |++++.+| .|++|++
T Consensus       778 lva~~~dG-~I~i~~~  792 (793)
T PLN00181        778 LVAANSTG-NIKILEM  792 (793)
T ss_pred             EEEecCCC-cEEEEec
Confidence            99999999 5999985

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.98  E-value=2e-33  Score=268.12  Aligned_cols=119  Identities=39%  Similarity=0.587  Sum_probs=104.4

Q ss_pred             CCCCCccccccCceeccCCchhhHhhccchHhhhhhCCCCCCCCCCCCCCcccccCCCCCcccc--cCCCCCcc--cc--
Q 003579          682 FGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEIL--FKPSESTK--ED--  755 (809)
Q Consensus       682 ~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~--~~~~~~~~--~~--  755 (809)
                      ..|.+++||+++|||||++|++|||+|+|||+||+||||+||||+|++|||||||++++++.|.  ......++  .+  
T Consensus        17 ~~~~s~~Qi~~~LiTLS~lP~srWq~Ll~LD~IK~RNKPkeppKkPe~APFFLpt~~~~~~~~~~~~~~~~~~~~~~~~~   96 (237)
T PF04192_consen   17 IEYSSPEQIDEDLITLSGLPRSRWQNLLNLDVIKERNKPKEPPKKPEKAPFFLPTLPGLEPRFQDAFESEEEEEEEEERS   96 (237)
T ss_pred             cccCChhhhCccceeeccCCHHHHHHHHHHHHHHHhCCCCCCCCCcCCCCcccCcCCCCCccccccccccccccchhhhh
Confidence            5599999999999999999999999999999999999999999999999999999999999882  21111111  11  


Q ss_pred             --------ccccccchhHHHHhcCCccCcccchhhHHHHHhhhhhhhcccceEEEee
Q 003579          756 --------TESLKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLN  804 (809)
Q Consensus       756 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  804 (809)
                              .....+|.|+++|+++.+.++|  .+.|..|+.|+|.++  |+|||+|+
T Consensus        97 ~~~~~~~~~~~~~~s~f~~lL~~~~~~~dy--~~~~~~LkslsPS~i--DlEIRsL~  149 (237)
T PF04192_consen   97 RLRKLKKDNSLDFESEFTRLLRSASESEDY--SEFLEYLKSLSPSAI--DLEIRSLS  149 (237)
T ss_pred             hhhhcccccCccccCHHHHHHHhhcccccH--HHHHHHHHhCChhHH--HHHHHhcc
Confidence                    2235889999999999999999  999999999999999  99999998

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=1.8e-31  Score=248.87  Aligned_cols=284  Identities=21%  Similarity=0.324  Sum_probs=239.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEec-------cCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-------SMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (809)
Q Consensus       180 ~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-------~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw  252 (809)
                      ..+.+.|..|||||++|++|+.||.|.+||..+|+....++-       -+..+|.|++|+.|.. .||+|+.||.|++|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVW  290 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEE
Confidence            356788999999999999999999999999999886554431       1257899999999999 99999999999999


Q ss_pred             ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (809)
Q Consensus       253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (809)
                      .+++|.+++.+..+|+.+|+++.|+.|+..+++++.|.++++.-+..+    ++++.+.||+..|+...|.+||.+++++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K~LKEfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----KCLKEFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----hhHHHhcCccccccceEEcCCCCeEEEe
Confidence            999999999999899999999999999999999999999999976655    6888899999999999999999999999


Q ss_pred             ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (809)
Q Consensus       333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  412 (809)
                      +.||++++|+..+..+...+..                                                          
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~----------------------------------------------------------  388 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKP----------------------------------------------------------  388 (508)
T ss_pred             cCCccEEEecCcchhhhhhccC----------------------------------------------------------
Confidence            9999999999877665444321                                                          


Q ss_pred             cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEE
Q 003579          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS  491 (809)
Q Consensus       413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s  491 (809)
                                                                                .+...+|..+..-|.+ ..++.
T Consensus       389 ----------------------------------------------------------~~~d~~vnsv~~~PKnpeh~iV  410 (508)
T KOG0275|consen  389 ----------------------------------------------------------LGTDYPVNSVILLPKNPEHFIV  410 (508)
T ss_pred             ----------------------------------------------------------CCCcccceeEEEcCCCCceEEE
Confidence                                                                      0223344455444433 45666


Q ss_pred             EeCcCeEEEEECCCCceeeeeec----CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC
Q 003579          492 AGYHGDIKVWDFKGRDLKSRWEV----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (809)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~----~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp  567 (809)
                      |....+|.+.++. |+.++.+..    ++...+.+.+|.|.++.+.++|+.++-|...+|++.+++.-|...|-.++-+|
T Consensus       411 CNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP  489 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP  489 (508)
T ss_pred             EcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc
Confidence            6666777777654 444555433    25677889999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEE
Q 003579          568 DGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       568 dg~~l~s~s~D~~I~vwd  585 (809)
                      ..+.|++-++||.+++|.
T Consensus       490 HqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  490 HQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccchhhhhcccchhhhcC
Confidence            999999999999999995

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=1.1e-31  Score=250.33  Aligned_cols=291  Identities=22%  Similarity=0.339  Sum_probs=248.6

Q ss_pred             eeeEEcCCcc-ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc--------CCCCCEEEEEEcCCCCEEEEEe
Q 003579          130 VGHVKLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--------GWGSSISSCVSSPALDVVAVGC  200 (809)
Q Consensus       130 ~~~~~~~~~~-~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--------~~~~~I~~l~~sp~~~~la~g~  200 (809)
                      .+++++.... .-+..|+|++  +++++|+.||.|.+||..+|+....++        -+..+|.|+.||.|...||+|+
T Consensus       205 ~r~IKFg~KSh~EcA~FSPDg--qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs  282 (508)
T KOG0275|consen  205 ARSIKFGQKSHVECARFSPDG--QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS  282 (508)
T ss_pred             hhheecccccchhheeeCCCC--ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence            4556665443 3445599999  999999999999999999998765443        4688999999999999999999


Q ss_pred             CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC
Q 003579          201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE  280 (809)
Q Consensus       201 ~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~  280 (809)
                      .||.|++|.+.+|.+++.|...|...|+|+.|+.|+. .+.+++.|.++++.-+.+|+++..++ +|.+.|+...|.++|
T Consensus       283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG  360 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG  360 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCC
Confidence            9999999999999999999987789999999999998 78899999999999999999999999 999999999999999


Q ss_pred             CEEEEEcCCCcEEEEEeeCCCCCceeEEec--cCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhH
Q 003579          281 PVLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (809)
Q Consensus       281 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~--~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  357 (809)
                      ..+++++.||+|++|+..+.+    ++.++  .+...+|..+-..| +...+++|...+++.+.++. ++..+.++.+. 
T Consensus       361 ~~iisaSsDgtvkvW~~Ktte----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk-  434 (508)
T KOG0275|consen  361 HHIISASSDGTVKVWHGKTTE----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK-  434 (508)
T ss_pred             CeEEEecCCccEEEecCcchh----hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC-
Confidence            999999999999999876653    33222  34567888888888 66789999999999988863 22223222211 


Q ss_pred             HHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCC
Q 003579          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (809)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~  437 (809)
                                                                                      ...+...++++||.|.
T Consensus       435 ----------------------------------------------------------------REgGdFi~~~lSpkGe  450 (508)
T KOG0275|consen  435 ----------------------------------------------------------------REGGDFINAILSPKGE  450 (508)
T ss_pred             ----------------------------------------------------------------ccCCceEEEEecCCCc
Confidence                                                                            1226677889999999


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579          438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (809)
Q Consensus       438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  502 (809)
                      ++.+.+.|+.++.|+..+|.....+.        -|...|.+++-+|..+.+++-+.||.+++|.
T Consensus       451 wiYcigED~vlYCF~~~sG~LE~tl~--------VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  451 WIYCIGEDGVLYCFSVLSGKLERTLP--------VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEccCcEEEEEEeecCceeeeee--------cccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999988886        8999999999999999999999999999994

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=3e-30  Score=235.13  Aligned_cols=292  Identities=13%  Similarity=0.184  Sum_probs=236.0

Q ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECC
Q 003579          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (809)
Q Consensus       176 ~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~  255 (809)
                      .+++|..+++.+.++.+|++|.+++.|.+..+|-..+|+.+.++.+| .+.|.|+....+.+ .|++|+.|.++++||.+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GH-tGavW~~Did~~s~-~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH-TGAVWCCDIDWDSK-HLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCC-CceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence            36789999999999999999999999999999999999999999987 89999999999988 89999999999999999


Q ss_pred             CceeeeeeecccccceEEEEEecCCCEEEEEcC-----CCcEEEEEeeCCCC---CceeEEeccCCCCCCeeEEEecCCC
Q 003579          256 KRRLQSVIREAHDNAIISLHFFANEPVLMSASA-----DNSIKMWIFDTTDG---DPRLLRFRSGHSAPPLCIRFYANGR  327 (809)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----d~~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~~~  327 (809)
                      +|+.+..+.  -..+|..+.|++++++++.+..     .+.|.++++.....   ...+...+..+...++.+-|.|-++
T Consensus        83 tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   83 TGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             CCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            999999987  6788999999999997776653     46688887764321   1122333344556666666666666


Q ss_pred             EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEe
Q 003579          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (809)
Q Consensus       328 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (809)
                      +|++|..||.|..||++++.                                                            
T Consensus       161 ~ii~Ghe~G~is~~da~~g~------------------------------------------------------------  180 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGK------------------------------------------------------------  180 (327)
T ss_pred             EEEEecCCCcEEEEEcccCc------------------------------------------------------------
Confidence            66666666666666655432                                                            


Q ss_pred             eeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC
Q 003579          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (809)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (809)
                                                                        ....-.       ..|...|+.+.++++..
T Consensus       181 --------------------------------------------------~~v~s~-------~~h~~~Ind~q~s~d~T  203 (327)
T KOG0643|consen  181 --------------------------------------------------ELVDSD-------EEHSSKINDLQFSRDRT  203 (327)
T ss_pred             --------------------------------------------------eeeech-------hhhccccccccccCCcc
Confidence                                                              221111       37888999999999999


Q ss_pred             EEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCe--------------EEEEEcCCCeEEEEE
Q 003579          488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV--------------IRLFDVVALRMVRKF  553 (809)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~--------------I~v~d~~~~~~~~~~  553 (809)
                      ++++++.|.+-++||+.+-+.++++....|+++.+++|....++.|+....              -++|++-..+.+..+
T Consensus       204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv  283 (327)
T KOG0643|consen  204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV  283 (327)
T ss_pred             eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999998877777654221              222333333456778


Q ss_pred             ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579          554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~  588 (809)
                      +||-++|++++|+|||+-.++|++||.||+.....
T Consensus       284 kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  284 KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            89999999999999999999999999999986653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.4e-29  Score=230.08  Aligned_cols=276  Identities=17%  Similarity=0.208  Sum_probs=245.7

Q ss_pred             ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEee
Q 003579          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~  344 (809)
                      +|...|.+++|+.+|..|++++.|+++++|+++...  ...-....+|.+.|-.++|+| ....+++++.|.++++||++
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            789999999999999999999999999999988762  222334568999999999998 66789999999999999999


Q ss_pred             ecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCC
Q 003579          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (809)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (809)
                      ..++......                                                                     .
T Consensus        96 ~~k~~~~i~~---------------------------------------------------------------------~  106 (313)
T KOG1407|consen   96 SGKCTARIET---------------------------------------------------------------------K  106 (313)
T ss_pred             cCcEEEEeec---------------------------------------------------------------------c
Confidence            8877655432                                                                     1


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      ..-.-++++|+|+++++|..|..|...|..+-+....+         .....+..++|+.++.+++.....|+|.|..+.
T Consensus       107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp  177 (313)
T KOG1407|consen  107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP  177 (313)
T ss_pred             CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---------cccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence            34456789999999999999999999999988777665         455678889999888888877777999999999


Q ss_pred             CCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEE
Q 003579          505 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (809)
Q Consensus       505 ~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~v  583 (809)
                      .-+++..++.+ ....|+.|+|+|+++|+|+.|..+.+||++..-+++.+..+.-+|..+.||.||++||+||+|..|-|
T Consensus       178 sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence            99999998766 78889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCC
Q 003579          584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN  621 (809)
Q Consensus       584 wd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~  621 (809)
                      =++++|..+..++..++...|+|+|...+||.++.|..
T Consensus       258 A~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  258 AEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             EecccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence            99999999999999999999999999999999998864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=5.1e-30  Score=231.10  Aligned_cols=281  Identities=16%  Similarity=0.256  Sum_probs=246.2

Q ss_pred             ccccceEEEEEec---CCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579          266 AHDNAIISLHFFA---NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (809)
Q Consensus       266 ~h~~~V~~l~~~~---~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  342 (809)
                      +|+.+|..++|+|   +|-+|++++.|+.-.+-+=+++    .-+-++.||.+.|.+.....+....++++.|=+-++||
T Consensus        12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg----dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG----DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC----CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            8999999999986   7779999999998777644443    45778899999999999998888889999999999999


Q ss_pred             eeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC
Q 003579          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (809)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (809)
                      ..++.....+                                                                     .
T Consensus        88 a~tgdelhsf---------------------------------------------------------------------~   98 (334)
T KOG0278|consen   88 AVTGDELHSF---------------------------------------------------------------------E   98 (334)
T ss_pred             hhhhhhhhhh---------------------------------------------------------------------h
Confidence            8877655443                                                                     2


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (809)
Q Consensus       423 ~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  502 (809)
                      |..-|.+++|+.|.++|++|+.+..+++||++.......-       ..+|.+.|..+.|....+.+++++.|++||+||
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E-------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD  171 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE-------ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD  171 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh-------hcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence            4467899999999999999999999999999876543322       249999999999999899999999999999999


Q ss_pred             CCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEE
Q 003579          503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR  582 (809)
Q Consensus       503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~  582 (809)
                      ..+++.++++....+++++.++++|++|.++ ..+.|.+||..+..+++.+.- .-.|.+...+|+...+++|++|..++
T Consensus       172 ~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~  249 (334)
T KOG0278|consen  172 HRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVY  249 (334)
T ss_pred             eccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEE
Confidence            9999999999999999999999999987765 467899999999998888773 45689999999999999999999999


Q ss_pred             EEEcCCccEEEEe-e-eCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          583 IWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       583 vwd~~~~~~i~~~-~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      .||..+|+.+..+ + ++.+|.|+.|||||..-|+++.|| +|+||-..
T Consensus       250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG-TirlWQt~  297 (334)
T KOG0278|consen  250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG-TIRLWQTT  297 (334)
T ss_pred             EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc-eEEEEEec
Confidence            9999999999886 3 567799999999999999999999 79999753

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.5e-29  Score=246.60  Aligned_cols=273  Identities=15%  Similarity=0.312  Sum_probs=235.8

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      ...|++++|+|...+-+|+.+ .-.+.||+..+.....++. .....|.++.|..||++|+.|+..|.|+++|+.+.   
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---  100 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccH---
Confidence            468999999998776677665 3579999998887777666 56788999999999999999999999999985543   


Q ss_pred             ceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579          304 PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (809)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (809)
                       ..++.+.+|+.|+..+.|+| ++..+++|+.|+.+++||+.+...                                  
T Consensus       101 -~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v----------------------------------  145 (487)
T KOG0310|consen  101 -VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV----------------------------------  145 (487)
T ss_pred             -HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----------------------------------
Confidence             57888899999999999999 666777888888889998743210                                  


Q ss_pred             cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (809)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (809)
                                                                                         .++          
T Consensus       146 -------------------------------------------------------------------~~~----------  148 (487)
T KOG0310|consen  146 -------------------------------------------------------------------QAE----------  148 (487)
T ss_pred             -------------------------------------------------------------------EEE----------
Confidence                                                                               001          


Q ss_pred             eCcccccccCccccEEEEEEcCCCC-EEEEEeCcCeEEEEECCCC-ceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 003579          463 LDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  540 (809)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~  540 (809)
                             +.+|+..|.+.+++|.+. +++|||.||.|++||++.. ..+.++.++.+|..+.+-|.|.++|+++. ..|+
T Consensus       149 -------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vk  220 (487)
T KOG0310|consen  149 -------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVK  220 (487)
T ss_pred             -------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEE
Confidence                   138999999999999765 8899999999999999987 88889999999999999999999998864 5899


Q ss_pred             EEEcCCC-eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeC
Q 003579          541 LFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  619 (809)
Q Consensus       541 v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d  619 (809)
                      |||+.+| +.+..+..|...|+|+++..+++.|++||.|+.|++||+.+-+.+..+..+++|.+++.+|+++.++.|..+
T Consensus       221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence            9999955 555556569999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 003579          620 QN  621 (809)
Q Consensus       620 ~~  621 (809)
                      |.
T Consensus       301 Gl  302 (487)
T KOG0310|consen  301 GL  302 (487)
T ss_pred             ce
Confidence            83

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-28  Score=235.54  Aligned_cols=279  Identities=20%  Similarity=0.310  Sum_probs=235.4

Q ss_pred             CCCCcEEEEEeCCeEEEEE-CCeEEEEEC-CeeEEEEccccccEEEEEEe-----CCEEEEEeCCCcEEEEEcCCCcccc
Q 003579           55 LPKKIRALASYRDYTFAAY-GNHIAVVKR-AHQVATWSRHSAKVNLLLLF-----GEHILSIDIDGNMFIWAFKGIEENL  127 (809)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~-g~~i~vw~~-~~~~~~~~~h~~~V~~l~~~-----g~~l~s~~~dg~i~vWd~~~~~~~~  127 (809)
                      |+.-|.++...+...+..+ ++.+++|+. |+....+.||.++|.++++-     ...+++++.|.++++|.++.++...
T Consensus       104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~  183 (423)
T KOG0313|consen  104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV  183 (423)
T ss_pred             chhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence            6777888877766666544 677999997 67778899999999988861     3469999999999999999887654


Q ss_pred             ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCC-------------------------CceEEEEcCCCC
Q 003579          128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-------------------------KKKLYEFKGWGS  182 (809)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~-------------------------~~~~~~~~~~~~  182 (809)
                      .....-.+|...+-++...+++  .++++|+.|..|.+|+..+                         +.++-++.+|..
T Consensus       184 ~~~~~~~GHk~~V~sVsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~  261 (423)
T KOG0313|consen  184 KALKVCRGHKRSVDSVSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE  261 (423)
T ss_pred             hHHhHhcccccceeEEEecCCC--CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence            4444455788888888889999  8999999999999999321                         235677899999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc--eee
Q 003579          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQ  260 (809)
Q Consensus       183 ~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~--~~~  260 (809)
                      +|.++.|++ ...+.+++.|.+|+.||+.+++.+.++..  ...+.|++.+|... +|++|+.|..|++||.+++  ..+
T Consensus       262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccc-eeeecCCCCceeecCCCCCCCcee
Confidence            999999999 66899999999999999999999999887  47899999999888 9999999999999999876  333


Q ss_pred             eeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEE
Q 003579          261 SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (809)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~  339 (809)
                      ..-..+|.+.|.++.|+|... +|++++.||++++||++...   ..+..+.+|...|.++.|. ++..+++||.|..|+
T Consensus       338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR  413 (423)
T ss_pred             EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---CcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence            333349999999999999655 78899999999999998764   3577778999999999998 556899999999999


Q ss_pred             EEEe
Q 003579          340 LFSV  343 (809)
Q Consensus       340 ~wd~  343 (809)
                      ++.-
T Consensus       414 i~~~  417 (423)
T KOG0313|consen  414 IFKG  417 (423)
T ss_pred             Eecc
Confidence            9864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-28  Score=254.64  Aligned_cols=277  Identities=20%  Similarity=0.338  Sum_probs=239.7

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeec
Q 003579          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE  265 (809)
Q Consensus       186 ~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~  265 (809)
                      -+.|+ ..+.||+|.. ..|.+|+..+++.......+ ...|+++.|+++|. +||+|..+|.|.|||..+.+.+..+..
T Consensus       182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhccccccccC
Confidence            35677 4468888875 57999999999876666665 78999999999999 999999999999999999999999984


Q ss_pred             ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeee
Q 003579          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  345 (809)
                      .|...|-+++|.  +..+.+|+.|+.|..+|+.......   ....+|...|..+.|++|++++++|+.|+.+.+||...
T Consensus       258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~  332 (484)
T KOG0305|consen  258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS  332 (484)
T ss_pred             CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence            499999999998  6689999999999999998875332   24789999999999999999999999999999999632


Q ss_pred             cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (809)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (809)
                      ..+..                                                                           
T Consensus       333 ~~p~~---------------------------------------------------------------------------  337 (484)
T KOG0305|consen  333 PEPKF---------------------------------------------------------------------------  337 (484)
T ss_pred             ccccE---------------------------------------------------------------------------
Confidence            21111                                                                           


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC-CCEEEEEe--CcCeEEEEE
Q 003579          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAG--YHGDIKVWD  502 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~--~dg~i~iwd  502 (809)
                                                         .+        ..|..+|.+++|+|- ..+||+|+  .|+.|++||
T Consensus       338 -----------------------------------~~--------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  338 -----------------------------------TF--------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             -----------------------------------EE--------eccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence                                               11        279999999999994 46788776  799999999


Q ss_pred             CCCCceeeeeecCCCeEEEEEeeCCCEEEEE--eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCe
Q 003579          503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS  580 (809)
Q Consensus       503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~--~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~  580 (809)
                      ..+++.+..+...+.|.++.|++..+-++++  ..+..|.||+..+.+.+..+.||..+|..+++||||..+++|+.|.+
T Consensus       375 ~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  375 TNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADET  454 (484)
T ss_pred             cCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence            9999999999999999999999998766664  45779999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCc
Q 003579          581 LRIWDVILA  589 (809)
Q Consensus       581 I~vwd~~~~  589 (809)
                      +++|++-+.
T Consensus       455 lrfw~~f~~  463 (484)
T KOG0305|consen  455 LRFWNLFDE  463 (484)
T ss_pred             EEeccccCC
Confidence            999998764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.3e-28  Score=220.51  Aligned_cols=298  Identities=17%  Similarity=0.261  Sum_probs=239.2

Q ss_pred             EccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (809)
Q Consensus        89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw  166 (809)
                      +.||..+++.+.+  +|+.|.+|+.|.+..||--.+++.    +.++..|.+.+++|.+..+.  +++++|+.|.++++|
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s--~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLW   79 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCc--ceeeeccccceeEEE
Confidence            7899999999998  699999999999999999988888    89999999999999999999  899999999999999


Q ss_pred             eCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----CCeEEEEEee-------CCeEEEEEeccCCCcEEEEEEec
Q 003579          167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS-----DGKIHVHNVR-------YDEELVTFTHSMRGAVTALAFSS  234 (809)
Q Consensus       167 d~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~~V~~l~fs~  234 (809)
                      |+++|+++.+++. ..+|..+.|+++|++++....     .+.|.++|++       ..++...+..+ ...++.+-|.|
T Consensus        80 Dv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~  157 (327)
T KOG0643|consen   80 DVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGP  157 (327)
T ss_pred             EcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecc
Confidence            9999999999986 789999999999998887654     3789999998       44567777776 68999999999


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (809)
Q Consensus       235 dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (809)
                      -++ .|++|..+|.|.+||+++++........|...|+.++++++..++++++.|.+-++||+..-    .+++.+ .-.
T Consensus       158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty-~te  231 (327)
T KOG0643|consen  158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTY-TTE  231 (327)
T ss_pred             cCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEe-eec
Confidence            999 89999999999999999985554444489999999999999999999999999999998876    444444 356


Q ss_pred             CCCeeEEEecCCCEEEEEECCCCEEEEEeeecc-cceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (809)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  393 (809)
                      .||++.+++|...+++.|+.....   |+.+-. ....+...-                                     
T Consensus       232 ~PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r~GKFEArF-------------------------------------  271 (327)
T KOG0643|consen  232 RPVNTAAISPLLDHVILGGGQEAM---DVTTTSTRAGKFEARF-------------------------------------  271 (327)
T ss_pred             ccccceecccccceEEecCCceee---eeeeecccccchhhhH-------------------------------------
Confidence            789999999966666655433222   221111 111010000                                     


Q ss_pred             EeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003579          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (809)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~  455 (809)
                                 |++-    -+..+....+|-++|.+++++|+|+..++|+.||.|++.-...
T Consensus       272 -----------yh~i----~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  272 -----------YHLI----FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             -----------HHHH----HHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence                       0000    0111223346779999999999999999999999999876554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.2e-27  Score=222.98  Aligned_cols=281  Identities=15%  Similarity=0.210  Sum_probs=239.3

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC--CCcEEEEEeeCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTD  301 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--d~~i~vw~~~~~~  301 (809)
                      .+.|.++.|+++|. +|++++.|..|++||..+++.+.++. .+..++..++|......++.++.  |.+||.-++... 
T Consensus        14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN-   90 (311)
T KOG1446|consen   14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN-   90 (311)
T ss_pred             CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC-
Confidence            67899999999999 88888999999999999999999998 77788999999988887877776  899999998877 


Q ss_pred             CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEee
Q 003579          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (809)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (809)
                         +.++.+.||...|.+++.+|-+..+++++.|++|++||++...+...+..                           
T Consensus        91 ---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---------------------------  140 (311)
T KOG1446|consen   91 ---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---------------------------  140 (311)
T ss_pred             ---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---------------------------
Confidence               79999999999999999999889999999999999999986655433321                           


Q ss_pred             ccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--e
Q 003579          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS--R  459 (809)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~--~  459 (809)
                                                                 ..-..++++|.|-++|++...+.|++||+++-..  .
T Consensus       141 -------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen  141 -------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF  177 (311)
T ss_pred             -------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence                                                       3445679999999999999999999999986422  2


Q ss_pred             eeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCC----CeEEEEEeeCCCEEEEEeC
Q 003579          460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNGLLATVAD  535 (809)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~i~~~~~s~~~~~la~~~~  535 (809)
                      ..+..     ..+.....+.+.|+|+|++++.+...+.+++.|.-+|..+.++....    -....+|+||++++.+|++
T Consensus       178 ~tf~i-----~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  178 TTFSI-----TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             eeEcc-----CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence            22221     11456789999999999999999999999999999999988887652    2357899999999999999


Q ss_pred             CCeEEEEEcCCCeEEEEEec-CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcC
Q 003579          536 DLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       536 d~~I~v~d~~~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~  587 (809)
                      ||+|++|++++++.+..+.+ +.+++.++.|+|.--.++|+  +..+-+|=..
T Consensus       253 dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  253 DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence            99999999999999999999 78999999999986555555  5678888654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=6.8e-29  Score=230.62  Aligned_cols=289  Identities=21%  Similarity=0.328  Sum_probs=241.1

Q ss_pred             cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC------------c------eeeeeeecccccceEEEEEecCCCEE
Q 003579          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------R------RLQSVIREAHDNAIISLHFFANEPVL  283 (809)
Q Consensus       222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~------------~------~~~~~~~~~h~~~V~~l~~~~~~~~l  283 (809)
                      .|++++.+.+|++||. ++|+|+.|..|+|.|.+.            +      -.++++. .|...|+++.|+|...+|
T Consensus       110 ~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             ecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhheE
Confidence            3489999999999999 999999999999999861            1      2345555 799999999999999999


Q ss_pred             EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (809)
Q Consensus       284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  363 (809)
                      ++++.|++|+++|+...... +..+.+ ....+|.++.|+|.|.+|+.|..-..+++||+.+-++-..            
T Consensus       188 iS~srD~tvKlFDfsK~saK-rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs------------  253 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKTSAK-RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS------------  253 (430)
T ss_pred             EeccCCCeEEEEecccHHHH-HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee------------
Confidence            99999999999999765322 222222 3456899999999999999999999999999876543221            


Q ss_pred             ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (809)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~  443 (809)
                                                                           ..+..+|.+.|+++.+++.|+..++|+
T Consensus       254 -----------------------------------------------------anPd~qht~ai~~V~Ys~t~~lYvTaS  280 (430)
T KOG0640|consen  254 -----------------------------------------------------ANPDDQHTGAITQVRYSSTGSLYVTAS  280 (430)
T ss_pred             -----------------------------------------------------cCcccccccceeEEEecCCccEEEEec
Confidence                                                                 123446779999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeeeCcccccccCccc-cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC------C
Q 003579          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------C  516 (809)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~  516 (809)
                      .||.|++||--+++++..+.       .+|.+ .|.+..|..+++++++.|.|..+++|.+.+++.+..+...      .
T Consensus       281 kDG~IklwDGVS~rCv~t~~-------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~  353 (430)
T KOG0640|consen  281 KDGAIKLWDGVSNRCVRTIG-------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK  353 (430)
T ss_pred             cCCcEEeeccccHHHHHHHH-------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence            99999999999999999887       37765 7899999999999999999999999999999999988764      2


Q ss_pred             CeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCCeEEEEE-ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579          517 SLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~  586 (809)
                      --+...|+....+++.-.+ .+.+.-||.++...+..+ -||.+.+..+.-||.+.-+++||.|..+|+|--
T Consensus       354 ~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  354 HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            2345667777777776644 578899999988665544 379999999999999999999999999999964

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.1e-29  Score=243.33  Aligned_cols=284  Identities=22%  Similarity=0.385  Sum_probs=246.7

Q ss_pred             eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (809)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~  340 (809)
                      ..+. .|.+.+..+.|.++...|++++.|..|++|+.....  .....++.|..++++.+.|.++++++++++.|+.+++
T Consensus       169 ~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  169 FVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhhh-ccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence            3444 899999999999998999999999999999877654  3567778889999999999999999999999999999


Q ss_pred             EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (809)
Q Consensus       341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (809)
                      |++...+....+                                                                    
T Consensus       246 Wnvd~~r~~~TL--------------------------------------------------------------------  257 (459)
T KOG0288|consen  246 WNVDSLRLRHTL--------------------------------------------------------------------  257 (459)
T ss_pred             eeccchhhhhhh--------------------------------------------------------------------
Confidence            998765443333                                                                    


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                      .+|...|+++.+......++.|+.|.+|+.||++++.+..++.         ....+..++.+  ...++++-.|++|++
T Consensus       258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------~~S~cnDI~~~--~~~~~SgH~DkkvRf  326 (459)
T KOG0288|consen  258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------PGSQCNDIVCS--ISDVISGHFDKKVRF  326 (459)
T ss_pred             cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------ccccccceEec--ceeeeecccccceEE
Confidence            3577899999999888889999999999999999988877663         33455666665  556888899999999


Q ss_pred             EECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC----CCCeeeEEECCCCCEEEEEe
Q 003579          501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h----~~~I~~l~fspdg~~l~s~s  576 (809)
                      ||..+..+....+.++.|+++..++++..|.+.+.|.++.+.|+.+.+....+...    ....+.+.|||+++|+++||
T Consensus       327 wD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS  406 (459)
T KOG0288|consen  327 WDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS  406 (459)
T ss_pred             EeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence            99999999999999999999999999999999999999999999999888887642    23488999999999999999


Q ss_pred             CCCeEEEEEcCCccEEEEeeeCc---ceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          577 MDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       577 ~D~~I~vwd~~~~~~i~~~~~~~---~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                      .||.|+||++.+|++...+....   .|++++|+|.|..|++++.+. .+.+|.
T Consensus       407 ~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~-~v~lW~  459 (459)
T KOG0288|consen  407 ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK-AVTLWT  459 (459)
T ss_pred             CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc-ceEecC
Confidence            99999999999999988886432   499999999999999999988 699994

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.5e-29  Score=244.21  Aligned_cols=276  Identities=19%  Similarity=0.346  Sum_probs=240.3

Q ss_pred             CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce--eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       223 ~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~  300 (809)
                      |.+.+..+.|-++.. .|++|+.|..|.+|+....+  .+.++. +..++|+++.|.+++..+++++.|+.+++|+++..
T Consensus       174 h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL  251 (459)
T ss_pred             cccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence            378899999999866 79999999999999988776  666776 77889999999999999999999999999998876


Q ss_pred             CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (809)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (809)
                          +...++.||...|+++.|......+++|+.|.+++.||+....+.+++..+                         
T Consensus       252 ----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-------------------------  302 (459)
T KOG0288|consen  252 ----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-------------------------  302 (459)
T ss_pred             ----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-------------------------
Confidence                788889999999999999987767999999999999999876555443211                         


Q ss_pred             eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 003579          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (809)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (809)
                                                                  ..+..++.+  +..+++|..|+.|++||.+++....
T Consensus       303 --------------------------------------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~  336 (459)
T KOG0288|consen  303 --------------------------------------------SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR  336 (459)
T ss_pred             --------------------------------------------ccccceEec--ceeeeecccccceEEEeccCCceee
Confidence                                                        233333333  5677889999999999999999988


Q ss_pred             eeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-----CCeEEEEEeeCCCEEEEEeC
Q 003579          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVAD  535 (809)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~s~~~~~la~~~~  535 (809)
                      ..+        .+ +.|+++..++++..+.+++.|.++.+.|+.+.+....+...     +..+.+.|||++.|+|+|+.
T Consensus       337 sv~--------~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~  407 (459)
T KOG0288|consen  337 SVP--------LG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA  407 (459)
T ss_pred             Eee--------cC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence            875        34 49999999999999999999999999999999888877543     67899999999999999999


Q ss_pred             CCeEEEEEcCCCeEEEEEecCCCC--eeeEEECCCCCEEEEEeCCCeEEEE
Q 003579          536 DLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIW  584 (809)
Q Consensus       536 d~~I~v~d~~~~~~~~~~~~h~~~--I~~l~fspdg~~l~s~s~D~~I~vw  584 (809)
                      ||.|+||++.++++...+......  |++++|+|.|..|++++.++.+.+|
T Consensus       408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999999999999999998875544  9999999999999999999999999

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-28  Score=241.91  Aligned_cols=280  Identities=20%  Similarity=0.293  Sum_probs=236.8

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579          180 WGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (809)
Q Consensus       180 ~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~  258 (809)
                      ..+.|++++|+|... -+|+++ .-.+.||+..+.....++... +..|++++|..||+ +||+|+..|.|++||+.+..
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srF-k~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~  101 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRF-KDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRV  101 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhh-ccceeEEEeecCCe-EEEccCCcCcEEEeccccHH
Confidence            357899999999543 344444 357999999888777776655 67899999999999 99999999999999988877


Q ss_pred             eeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCC
Q 003579          259 LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDR  336 (809)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg  336 (809)
                      .+..+. +|+.+|..+.|+|.+. .+++|+.|+.+++||++...    ....+.+|...|.|.+++| ++..++|||.||
T Consensus       102 iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg  176 (487)
T KOG0310|consen  102 ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----VQAELSGHTDYVRCGDISPANDHIVVTGSYDG  176 (487)
T ss_pred             HHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----EEEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence            888888 9999999999999654 78888899999999988763    4557889999999999999 566899999999


Q ss_pred             CEEEEEeeecc-cceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecce
Q 003579          337 AFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (809)
Q Consensus       337 ~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (809)
                      .|++||++... ...++                                                               
T Consensus       177 ~vrl~DtR~~~~~v~el---------------------------------------------------------------  193 (487)
T KOG0310|consen  177 KVRLWDTRSLTSRVVEL---------------------------------------------------------------  193 (487)
T ss_pred             eEEEEEeccCCceeEEe---------------------------------------------------------------
Confidence            99999998652 22222                                                               


Q ss_pred             eeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCc
Q 003579          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  495 (809)
Q Consensus       416 ~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d  495 (809)
                            .|..+|..+.+-|.|..+++++ ...|++||+.+|.......       ..|...|+|+.+..++..|++++.|
T Consensus       194 ------nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~-------~~H~KtVTcL~l~s~~~rLlS~sLD  259 (487)
T KOG0310|consen  194 ------NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM-------FNHNKTVTCLRLASDSTRLLSGSLD  259 (487)
T ss_pred             ------cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh-------hcccceEEEEEeecCCceEeecccc
Confidence                  3458899999999999888875 4579999999654443332       2599999999999999999999999


Q ss_pred             CeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEc
Q 003579          496 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (809)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~  544 (809)
                      +.+++||+.+-+.+..+...++|.+++.+|++..+++|..||.+-+-+.
T Consensus       260 ~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  260 RHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             cceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence            9999999999999999999999999999999999999999998877633

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.6e-28  Score=250.75  Aligned_cols=269  Identities=18%  Similarity=0.229  Sum_probs=234.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~  231 (809)
                      |.|++|.. ..|++|+..+++.......+...|+++.|+++|.+||+|..+|.|.|||....+.+..+..+|...|.+++
T Consensus       189 n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la  267 (484)
T KOG0305|consen  189 NVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA  267 (484)
T ss_pred             CeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEe
Confidence            56777754 56999999999877776666899999999999999999999999999999999999999986799999999


Q ss_pred             EecCCCCEEEEEcCCCcEEEEECCCceeeee-eecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEec
Q 003579          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR  310 (809)
Q Consensus       232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~  310 (809)
                      |.  +. .+.+|+.+|.|..+|++..+.... +. +|...|..+.|++|+.+|++|+.|+.+.|||....    .....+
T Consensus       268 W~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----~p~~~~  339 (484)
T KOG0305|consen  268 WN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----EPKFTF  339 (484)
T ss_pred             cc--Cc-eEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCCeeccCCCccceEeccCCCc----cccEEE
Confidence            98  33 799999999999999998866555 55 89999999999999999999999999999987433    566677


Q ss_pred             cCCCCCCeeEEEec-CCCEEEEEE--CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccccc
Q 003579          311 SGHSAPPLCIRFYA-NGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (809)
Q Consensus       311 ~~h~~~v~~i~~~~-~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  387 (809)
                      ..|.+.|..++|+| ....|++|+  .|+.|++|++.++.....+.                                  
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----------------------------------  385 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----------------------------------  385 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----------------------------------
Confidence            89999999999999 667888875  69999999998776554432                                  


Q ss_pred             ccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceeeeeeCc
Q 003579          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRGSYLDM  465 (809)
Q Consensus       388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~~~~~~~  465 (809)
                                                         ....|.++.|++..+-+++  |+.++.|.+|+..+......+.  
T Consensus       386 -----------------------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--  428 (484)
T KOG0305|consen  386 -----------------------------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--  428 (484)
T ss_pred             -----------------------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--
Confidence                                               2278999999999877665  6778899999999988877775  


Q ss_pred             ccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC
Q 003579          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  506 (809)
Q Consensus       466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  506 (809)
                            +|...|..++++|+|..+++|+.|.++++|++-..
T Consensus       429 ------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  429 ------GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ------CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                  99999999999999999999999999999997654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.4e-28  Score=256.10  Aligned_cols=298  Identities=16%  Similarity=0.246  Sum_probs=219.7

Q ss_pred             CceEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccC----------CCcEEEEEEec---CC
Q 003579          171 KKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----------RGAVTALAFSS---DG  236 (809)
Q Consensus       171 ~~~~~~~~-~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~----------~~~V~~l~fs~---dg  236 (809)
                      ....+.+. .|.+.|.++.||+||+|||+|+.||.|+||.+...+. .......          .+.+..+.-++   .+
T Consensus       256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~  334 (712)
T KOG0283|consen  256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS  334 (712)
T ss_pred             eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCccccccccccc
Confidence            33445566 8999999999999999999999999999999976443 1111110          01111111111   01


Q ss_pred             C-CEEEEEcCCCcEEEEECCC----ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEecc
Q 003579          237 Q-PLLASGASSGVISIWNLEK----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS  311 (809)
Q Consensus       237 ~-~~lasg~~dg~I~iwdl~~----~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~  311 (809)
                      + ...-.+..... .+.+...    .+++..+. +|.+.|..+.|+.++ +|++++.|.+||+|++...    .++..+ 
T Consensus       335 ~~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~----~CL~~F-  406 (712)
T KOG0283|consen  335 RTSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK----ECLKVF-  406 (712)
T ss_pred             cccccccccCCcc-ccCCCccccccccchhhhh-ccchhheecccccCC-eeEeccccccEEeecCCCc----ceeeEE-
Confidence            1 01122222233 2233222    35667777 999999999999876 8999999999999988766    567666 


Q ss_pred             CCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579          312 GHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (809)
Q Consensus       312 ~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  390 (809)
                      .|..-|+|++|+| |.+++++|+-||.+|+|++...+.                                          
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V------------------------------------------  444 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV------------------------------------------  444 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee------------------------------------------
Confidence            7999999999999 899999999999999999854432                                          


Q ss_pred             eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccc
Q 003579          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN  470 (809)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~  470 (809)
                                  ..|.               .-..-|++++++|+|++.++|+-+|.+++|+....+......-......
T Consensus       445 ------------v~W~---------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  445 ------------VDWN---------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             ------------Eeeh---------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence                        1121               1127899999999999999999999999999988777665542221111


Q ss_pred             -cCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579          471 -YAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (809)
Q Consensus       471 -~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~I~v~d~~  545 (809)
                       ..|. .|+++.+.|.. ..+++.+.|..|||+|..+..++..+...   ..-....|+.||++|+++++|..|++|++.
T Consensus       498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence             1233 89999999754 45788889999999999988888888754   445677899999999999999999999986


Q ss_pred             CC
Q 003579          546 AL  547 (809)
Q Consensus       546 ~~  547 (809)
                      ..
T Consensus       577 ~~  578 (712)
T KOG0283|consen  577 SF  578 (712)
T ss_pred             CC
Confidence            54

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2.6e-27  Score=254.84  Aligned_cols=281  Identities=22%  Similarity=0.378  Sum_probs=243.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE-EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (809)
Q Consensus       180 ~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~  258 (809)
                      +...+.+..|.  ..++++++.+++|++|+..++..+.. +.+| .+.|.+++|...+. +|++|+.|.++++||..+|+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH-~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGH-FGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCC-CCCceeEEEecCCC-EEEEEecCCcEEeEecCCCc
Confidence            56778888888  56899999999999999999999988 6655 89999999987444 99999999999999999999


Q ss_pred             eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCE
Q 003579          259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  338 (809)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i  338 (809)
                      +...+. +|.+.|.++...  ...+++|+.|.+|++|+++.+    ..+..+.+|.++|.++..+  +.++++|+.|++|
T Consensus       283 C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~----~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  283 CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG----ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCc----ceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence            999999 999999999865  447888999999999999855    6788888899999999997  7799999999999


Q ss_pred             EEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeee
Q 003579          339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (809)
Q Consensus       339 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  418 (809)
                      ++|++.+.+....                                                                   
T Consensus       354 ~VW~~~~~~cl~s-------------------------------------------------------------------  366 (537)
T KOG0274|consen  354 KVWDPRTGKCLKS-------------------------------------------------------------------  366 (537)
T ss_pred             EEEEhhhceeeee-------------------------------------------------------------------
Confidence            9999764433222                                                                   


Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeE
Q 003579          419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (809)
Q Consensus       419 ~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i  498 (809)
                                                                 +        .+|...|.++.+++. ..+++|+.|++|
T Consensus       367 -------------------------------------------l--------~gH~~~V~sl~~~~~-~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  367 -------------------------------------------L--------SGHTGRVYSLIVDSE-NRLLSGSLDTTI  394 (537)
T ss_pred             -------------------------------------------e--------cCCcceEEEEEecCc-ceEEeeeeccce
Confidence                                                       2        389999999988766 889999999999


Q ss_pred             EEEECCCC-ceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-CCCCeeeEEECCCCCEEEEEe
Q 003579          499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s  576 (809)
                      ++||+.+. +++.++..+..+. ......+++|.+++.|+.|++||.+++++++++.+ |.+.|+.+++.  ...+++++
T Consensus       395 kvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~  471 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS  471 (537)
T ss_pred             EeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe
Confidence            99999999 8999998885544 33444588999999999999999999999999999 77999999887  45788899


Q ss_pred             CCCeEEEEEcCCccEEEEe
Q 003579          577 MDGSLRIWDVILARQIDAI  595 (809)
Q Consensus       577 ~D~~I~vwd~~~~~~i~~~  595 (809)
                      .|+++++||+++++++..+
T Consensus       472 ~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  472 DDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cCCeeEEEecccCchhhhh
Confidence            9999999999999988766

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.5e-26  Score=214.93  Aligned_cols=294  Identities=12%  Similarity=0.194  Sum_probs=237.4

Q ss_pred             CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC--CCc
Q 003579          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS--SGV  248 (809)
Q Consensus       171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~--dg~  248 (809)
                      -++...|......|.++.|+++|.+|++++.|.+++|||..+++.+.++... +-.+..++|..... .++.++.  |.+
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG~~~~~Fth~~~-~~i~sStk~d~t   81 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYGVDLACFTHHSN-TVIHSSTKEDDT   81 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-cccccEEEEecCCc-eEEEccCCCCCc
Confidence            3445556667889999999999999999999999999999999999999876 56788999987776 4555554  889


Q ss_pred             EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (809)
Q Consensus       249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (809)
                      |+..++.+.+.++.+. ||...|++++.+|-+..+++++.|++|++||++.......+      +...-..++|.|+|-.
T Consensus        82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l------~~~~~pi~AfDp~GLi  154 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL------NLSGRPIAAFDPEGLI  154 (311)
T ss_pred             eEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE------ecCCCcceeECCCCcE
Confidence            9999999999999999 99999999999999999999999999999999866543222      2233456899999999


Q ss_pred             EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (809)
Q Consensus       329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (809)
                      ++++.....|++||++.-..                         .|...                              
T Consensus       155 fA~~~~~~~IkLyD~Rs~dk-------------------------gPF~t------------------------------  179 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDK-------------------------GPFTT------------------------------  179 (311)
T ss_pred             EEEecCCCeEEEEEecccCC-------------------------CCcee------------------------------
Confidence            99988887999999875321                         11111                              


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (809)
                              +..........+.+.|||||+++++++..+.+++.|.-+|.....+....     ....--.+.+|.|++++
T Consensus       180 --------f~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-----~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  180 --------FSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-----NAGNLPLSATFTPDSKF  246 (311)
T ss_pred             --------EccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-----CCCCcceeEEECCCCcE
Confidence                    11111234778899999999999999999999999999999888876311     11111257789999999


Q ss_pred             EEEEeCcCeEEEEECCCCceeeeeec--CCCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579          489 MISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFD  543 (809)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~d~~I~v~d  543 (809)
                      +++|+.||+|.+|+++++..+..+..  ..++.++.|+|.-.++++++.  .+.+|=
T Consensus       247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~  301 (311)
T KOG1446|consen  247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWL  301 (311)
T ss_pred             EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEe
Confidence            99999999999999999999999887  388999999998878777754  555553

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=4.3e-27  Score=213.99  Aligned_cols=280  Identities=14%  Similarity=0.168  Sum_probs=239.1

Q ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe-ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE
Q 003579          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (809)
Q Consensus       175 ~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd  253 (809)
                      +.+.+|.+.|.+++|..+|..||+|+.|+++.+|++..++...... .+|.+.|-.++|.|....++++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4567899999999999999999999999999999999886555443 344678999999998888999999999999999


Q ss_pred             CCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE
Q 003579          254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (809)
Q Consensus       254 l~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (809)
                      .+.+++...+.  ..+.=.-+.|+|+|.+++.++.|..|.+.|....    +.... ......+..+.|+.++.+++...
T Consensus        94 ~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~----~~~~~-~~~~~e~ne~~w~~~nd~Fflt~  166 (313)
T KOG1407|consen   94 IRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTY----KIVNE-EQFKFEVNEISWNNSNDLFFLTN  166 (313)
T ss_pred             eccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEeccc----ceeeh-hcccceeeeeeecCCCCEEEEec
Confidence            99999998887  4444556889999999999999999999987654    22222 23445678889988788877777


Q ss_pred             CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeec
Q 003579          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (809)
Q Consensus       334 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  413 (809)
                      ..|.|.+.+...-+....+                                                             
T Consensus       167 GlG~v~ILsypsLkpv~si-------------------------------------------------------------  185 (313)
T KOG1407|consen  167 GLGCVEILSYPSLKPVQSI-------------------------------------------------------------  185 (313)
T ss_pred             CCceEEEEecccccccccc-------------------------------------------------------------
Confidence            7899998876543332222                                                             


Q ss_pred             ceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe
Q 003579          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG  493 (809)
Q Consensus       414 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~  493 (809)
                             ..|+....|+.|+|+|+++++|+.|..+.+||++.-...+.+.        .+.-+|..+.|+.+|++|++++
T Consensus       186 -------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--------RldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  186 -------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS--------RLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             -------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec--------cccCceEEEEeccCcceeeccC
Confidence                   2466888999999999999999999999999999999888886        7899999999999999999999


Q ss_pred             CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCC
Q 003579          494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL  537 (809)
Q Consensus       494 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~  537 (809)
                      .|..|-|=++++|..+..++..++...++|||...+||.+++|.
T Consensus       251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence            99999999999999999999999999999999999999998863

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.2e-27  Score=222.37  Aligned_cols=292  Identities=19%  Similarity=0.320  Sum_probs=242.4

Q ss_pred             ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC--------------CCCceeEEeccCCCCCCeeEEEecCCCEEEE
Q 003579          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (809)
                      .|.+++.+.+|++||.++++|+.|.+|++.|++..              .....+++++..|..+|+++.|+|....|++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            79999999999999999999999999999998621              1122467888999999999999999999999


Q ss_pred             EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (809)
Q Consensus       332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (809)
                      ++.|++|++||+......+.+..         +                                               
T Consensus       190 ~srD~tvKlFDfsK~saKrA~K~---------~-----------------------------------------------  213 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSAKRAFKV---------F-----------------------------------------------  213 (430)
T ss_pred             ccCCCeEEEEecccHHHHHHHHH---------h-----------------------------------------------
Confidence            99999999999865432221110         0                                               


Q ss_pred             ecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE
Q 003579          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (809)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (809)
                                ....++.++.|+|.|.|+++|+....+++||+.+-+....-.     ....|.+.|+++.+++.+++.++
T Consensus       214 ----------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYvT  278 (430)
T KOG0640|consen  214 ----------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----PDDQHTGAITQVRYSSTGSLYVT  278 (430)
T ss_pred             ----------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----cccccccceeEEEecCCccEEEE
Confidence                      112689999999999999999999999999999877654432     13489999999999999999999


Q ss_pred             EeCcCeEEEEECCCCceeeeeec---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC--C---CeeeE
Q 003579          492 AGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT--D---RITDF  563 (809)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~--~---~I~~l  563 (809)
                      ++.||.|++||--+++++.++..   +..|.+..|..+++++++.+.|..+++|.+.+++++.++.|..  +   --+..
T Consensus       279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA  358 (430)
T KOG0640|consen  279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA  358 (430)
T ss_pred             eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence            99999999999999999988853   3789999999999999999999999999999999999987641  1   23445


Q ss_pred             EECCCCCEEEEEe-CCCeEEEEEcCCccEEEEe--eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          564 CFSEDGKWLLSSG-MDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       564 ~fspdg~~l~s~s-~D~~I~vwd~~~~~~i~~~--~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      .|.....|++.-. ..+.+.-||..++..+..+  .+.+++..+.-||.+.-+.|++.|- .+++|--+
T Consensus       359 vFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~-raRFWyrr  426 (430)
T KOG0640|consen  359 VFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF-RARFWYRR  426 (430)
T ss_pred             hhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc-eeeeeeec
Confidence            6777777877654 3467999999988765444  4556699999999999999999998 49999754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.7e-27  Score=230.03  Aligned_cols=282  Identities=18%  Similarity=0.331  Sum_probs=248.2

Q ss_pred             CcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCc
Q 003579          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (809)
Q Consensus       225 ~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~  304 (809)
                      ..++++...+... .+.+|+.|..+.++|...++.+..+. ||...|+.+.|+++...+++++.|..|++|......   
T Consensus       220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---  294 (506)
T KOG0289|consen  220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---  294 (506)
T ss_pred             CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeecccccc---
Confidence            4688888888744 78999999999999999999999999 999999999999999999999999999999776553   


Q ss_pred             eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (809)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  384 (809)
                       .......|..+|+.+..+|.|.||++++.|++..+.|++++.+....+..                             
T Consensus       295 -~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-----------------------------  344 (506)
T KOG0289|consen  295 -EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-----------------------------  344 (506)
T ss_pred             -CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-----------------------------
Confidence             33445689999999999999999999999999999888777554432210                             


Q ss_pred             cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeC
Q 003579          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  464 (809)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~  464 (809)
                                                           ...-.+++.+|+|||..+.+|+.||.+++||+.++.....|+ 
T Consensus       345 -------------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-  386 (506)
T KOG0289|consen  345 -------------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-  386 (506)
T ss_pred             -------------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-
Confidence                                                 122568999999999999999999999999999999888886 


Q ss_pred             cccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 003579          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLF  542 (809)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~  542 (809)
                             +|.++|..++|+.+|-+|++++.|+.|++||++..+...++...  .++.++.|.+.|.+|+.++.|-.|+++
T Consensus       387 -------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  387 -------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             -------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence                   89999999999999999999999999999999999988888776  469999999999999999888777777


Q ss_pred             Ec--CCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579          543 DV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       543 d~--~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~  586 (809)
                      +-  .++..+..+..|.+..+.+.|..+.++++++|+|..++++.+
T Consensus       460 ~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  460 KKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            73  356788889999999999999999999999999999998865

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=1.4e-26  Score=234.36  Aligned_cols=538  Identities=15%  Similarity=0.215  Sum_probs=309.9

Q ss_pred             eeEEEEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEc-CC-ccccEEEEeCCCCCCEEEEEe
Q 003579           84 HQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-DD-KFTPTCIMHPDTYLNKVIVGS  158 (809)
Q Consensus        84 ~~~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~p~~~~~~l~~~~  158 (809)
                      +.+..+.+|...|+.+.|   ....|++|+.|..|+||.+..+-........+.+ +. ..+-++-|||..  .-|+..+
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTa--Dgil~s~  147 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTA--DGILASG  147 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCc--CceEEec
Confidence            345668999999999986   5778999999999999999854332111111222 22 233344599987  3455555


Q ss_pred             CCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCC
Q 003579          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ  237 (809)
Q Consensus       159 ~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~  237 (809)
                      ..|++++||+.+++.+..+.+|...|.++.|+.||.+|++.+.|..|+|||.+. ++.++....|..-.=..+.|..+-.
T Consensus       148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~  227 (1012)
T KOG1445|consen  148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWE  227 (1012)
T ss_pred             cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchh
Confidence            779999999999999999999999999999999999999999999999999985 4566666555333445677776655


Q ss_pred             CEEEEEcC---CCcEEEEECCCc-eeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCC---------
Q 003579          238 PLLASGAS---SGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGD---------  303 (809)
Q Consensus       238 ~~lasg~~---dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~---------  303 (809)
                      .++-+|-.   -..|++||.+.- ..++++......+|.---|.||.++|+-+| .++.+..+.+.....-         
T Consensus       228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tl  307 (1012)
T KOG1445|consen  228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTL  307 (1012)
T ss_pred             hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcc
Confidence            45555542   357899998764 445555534455666667888888666555 3666666644322000         


Q ss_pred             ----------------------ceeEE----------------------------------------eccCCCCCCeeEE
Q 003579          304 ----------------------PRLLR----------------------------------------FRSGHSAPPLCIR  321 (809)
Q Consensus       304 ----------------------~~~~~----------------------------------------~~~~h~~~v~~i~  321 (809)
                                            .+.++                                        .+.|....|..+.
T Consensus       308 e~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvS  387 (1012)
T KOG1445|consen  308 EEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVS  387 (1012)
T ss_pred             hhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccc
Confidence                                  00000                                        0000000111111


Q ss_pred             Ee------------------------------------------------cC--CCEEEEEECCCCEEEEEeeecccce-
Q 003579          322 FY------------------------------------------------AN--GRHILSAGQDRAFRLFSVIQDQQSR-  350 (809)
Q Consensus       322 ~~------------------------------------------------~~--~~~l~s~~~dg~i~~wd~~~~~~~~-  350 (809)
                      ..                                                ||  .+--+.  ....++-.+.+..+... 
T Consensus       388 l~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~~g  465 (1012)
T KOG1445|consen  388 LAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP--KKEEVRELDYRPYEKENG  465 (1012)
T ss_pred             cCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC--cchhhhhhcccccccccC
Confidence            10                                                00  000000  00111212111110000 


Q ss_pred             --------ecchhhHH--------H----HHhhccchhhh---hccCceeEEeecccccccc-------ceeEEeecCC-
Q 003579          351 --------ELSQRHVA--------K----RARKLKMKEEE---LKLKPVIAFDCAEIRERDW-------CNVVTCHMDT-  399 (809)
Q Consensus       351 --------~~~~~~~~--------~----~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~-  399 (809)
                              ...++...        .    +..........   ..+.|...-...+.+....       +.+.....-. 
T Consensus       466 ~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~  545 (1012)
T KOG1445|consen  466 VHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRP  545 (1012)
T ss_pred             ccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccc
Confidence                    00000000        0    00000000000   0000000000000000000       0000000000 


Q ss_pred             -----ceEEEEEeeeeeeccee-----ee-cCCCCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCcee-eeeeCc
Q 003579          400 -----AQAYVWRLQNFVLGEHI-----LR-PCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISR-GSYLDM  465 (809)
Q Consensus       400 -----~~~~~w~~~~~~~~~~~-----~~-~~~~~~~~v~~v~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~-~~~~~~  465 (809)
                           +.+.-|.--.+..+...     ++ .....++...  -|..+..++++  .+..|.|.+|++...-.+ ..... 
T Consensus       546 ~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsn--Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p-  622 (1012)
T KOG1445|consen  546 KSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESN--GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP-  622 (1012)
T ss_pred             cceeeccchheeeccCccccchhhhhhhhcccccCCCccC--ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccc-
Confidence                 00000000000000000     00 0000011111  23333455554  456799999998653222 11110 


Q ss_pred             ccccccCccccEEEEEEcC-CCCEEEEEeCcCeEEEEECCCCc-------eeeeeecC-CCeEEEEEee-CCCEEEEEeC
Q 003579          466 SERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRD-------LKSRWEVG-CSLVKIVYHR-VNGLLATVAD  535 (809)
Q Consensus       466 ~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~-~~i~~~~~s~-~~~~la~~~~  535 (809)
                          ..-....|+.++|+| |...|+.++.||.|++|.+..+.       +...+..+ ..|+++.||| ..+.|++++.
T Consensus       623 ----~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy  698 (1012)
T KOG1445|consen  623 ----GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY  698 (1012)
T ss_pred             ----ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence                012456799999999 56889999999999999987653       23334434 7899999999 5678999999


Q ss_pred             CCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccE-EEEeee--CcceEEEEEcCCCCe
Q 003579          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-IDAIHV--DVSITALSLSPNMDV  612 (809)
Q Consensus       536 d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~-i~~~~~--~~~v~~l~~spdg~~  612 (809)
                      |.+|++||+.+++....|.||++.|.+++|||||+.+++.+.||+|+||+-.+++. +..-.+  ...--.+.|.-||++
T Consensus       699 d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~  778 (1012)
T KOG1445|consen  699 DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI  778 (1012)
T ss_pred             cceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence            99999999999999999999999999999999999999999999999999877643 222221  123557888889999


Q ss_pred             EEEEEeCC---CeEEEeecCccc
Q 003579          613 LATAHVDQ---NGVYLWVNRCMF  632 (809)
Q Consensus       613 lat~~~d~---~~i~lW~~~~~~  632 (809)
                      ++..+-|.   +.|.+|+.+.+-
T Consensus       779 viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  779 VIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             EEEecccccchhhhhhhhhhhcc
Confidence            99988775   247788765443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.4e-27  Score=256.83  Aligned_cols=303  Identities=18%  Similarity=0.247  Sum_probs=246.2

Q ss_pred             cccceEEEEEecCCCEEEEEc--CCCcEEEEEeeCCC--------CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC
Q 003579          267 HDNAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTD--------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (809)
Q Consensus       267 h~~~V~~l~~~~~~~~l~s~s--~d~~i~vw~~~~~~--------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (809)
                      +...|.++..+|++..++|||  .|+.+++|+.+.-.        ..++.+.....|.+.|+|++|++||++|++|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            456789999999999999999  89999999775421        13566777889999999999999999999999999


Q ss_pred             CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeeccee
Q 003579          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (809)
Q Consensus       337 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (809)
                      .|.+|..... .....                                        .-...+...+.-|..         
T Consensus        92 ~v~iW~~~~~-~~~~~----------------------------------------fgs~g~~~~vE~wk~---------  121 (942)
T KOG0973|consen   92 LVMIWERAEI-GSGTV----------------------------------------FGSTGGAKNVESWKV---------  121 (942)
T ss_pred             eEEEeeeccc-CCccc----------------------------------------ccccccccccceeeE---------
Confidence            9999986531 00000                                        000001111112221         


Q ss_pred             eecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC
Q 003579          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (809)
Q Consensus       417 ~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (809)
                      .....+|...|..++|+|++.++++++.|++|.+||..+......+.        +|.+.|.++.|+|-|+++++-+.|+
T Consensus       122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--------~H~s~VKGvs~DP~Gky~ASqsdDr  193 (942)
T KOG0973|consen  122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--------GHQSLVKGVSWDPIGKYFASQSDDR  193 (942)
T ss_pred             EEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--------cccccccceEECCccCeeeeecCCc
Confidence            22233588999999999999999999999999999999997777775        9999999999999999999999999


Q ss_pred             eEEEEECCCCceeeeeecC-------CCeEEEEEeeCCCEEEEEeC----CCeEEEEEcCCCeEEEEEecCCCCeeeEEE
Q 003579          497 DIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEGHTDRITDFCF  565 (809)
Q Consensus       497 ~i~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~~~la~~~~----d~~I~v~d~~~~~~~~~~~~h~~~I~~l~f  565 (809)
                      +|+||++.+....+.+..+       .-...+.|||||.+|++...    -..+.|.+-.+++.-..|-||.+++..+.|
T Consensus       194 tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF  273 (942)
T KOG0973|consen  194 TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF  273 (942)
T ss_pred             eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence            9999998877666666432       56788999999999998743    357899999999999999999999999999


Q ss_pred             CCC-----CC------------EEEEEeCCCeEEEEEcCCccEEEEee--eCcceEEEEEcCCCCeEEEEEeCCCeEEEe
Q 003579          566 SED-----GK------------WLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLW  626 (809)
Q Consensus       566 spd-----g~------------~l~s~s~D~~I~vwd~~~~~~i~~~~--~~~~v~~l~~spdg~~lat~~~d~~~i~lW  626 (809)
                      +|.     .+            .+|+||.|++|.||.....+++...+  ....|..++|+|||..|..++.|| +|.+.
T Consensus       274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG-tV~~i  352 (942)
T KOG0973|consen  274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG-TVALI  352 (942)
T ss_pred             ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC-eEEEE
Confidence            981     11            57799999999999998888877665  345699999999999999999999 59887


Q ss_pred             ec
Q 003579          627 VN  628 (809)
Q Consensus       627 ~~  628 (809)
                      ..
T Consensus       353 ~F  354 (942)
T KOG0973|consen  353 HF  354 (942)
T ss_pred             Ec
Confidence            64

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.1e-27  Score=250.89  Aligned_cols=299  Identities=17%  Similarity=0.245  Sum_probs=219.9

Q ss_pred             CCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccce
Q 003579          312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (809)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  391 (809)
                      .|.+.|.++.|++||+|||+||.|+.|++|.+...... .+..+........+.  .... ..|...-. . ... .-..
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~~~~~~~~~~~~--~~s~-~~p~~s~~-~-~~~-~~~s  337 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAEGDSSCMYFEYN--ANSQ-IEPSTSSE-E-KIS-SRTS  337 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccccccchhhhhhh--hccc-cCcccccc-c-ccc-cccc
Confidence            89999999999999999999999999999999874331 111100000000000  0000 00000000 0 000 0000


Q ss_pred             eEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccccc
Q 003579          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (809)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (809)
                      ..-.+..... ...+..........+....+|.+.|..+.||.+ ++|++++.|.+|++|++....++..|         
T Consensus       338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F---------  406 (712)
T KOG0283|consen  338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF---------  406 (712)
T ss_pred             ccccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE---------
Confidence            0000000111 122222223334555666789999999999975 68999999999999999999999998         


Q ss_pred             CccccEEEEEEcC-CCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEE
Q 003579          472 AHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  550 (809)
Q Consensus       472 ~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~  550 (809)
                      .|..-|+|++|+| |.+++++|+.||.||||++...+...-.+.+.-|++++|.|||++.++|+-+|.+++|+....+.+
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence            7999999999999 669999999999999999999999988889999999999999999999999999999999988776


Q ss_pred             EEEec---------CCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCccEEEEeeeCcc---eEEEEEcCCCCeEEEEE
Q 003579          551 RKFEG---------HTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAH  617 (809)
Q Consensus       551 ~~~~~---------h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~---v~~l~~spdg~~lat~~  617 (809)
                      ..+.-         |. +|+.+.|.|.. ..|++.+.|..|||+|..+..++..|++...   =....|+.||++|++++
T Consensus       487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s  565 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS  565 (712)
T ss_pred             EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence            65431         33 79999999743 3466678899999999998888888875433   56788999999999999


Q ss_pred             eCCCeEEEeecCc
Q 003579          618 VDQNGVYLWVNRC  630 (809)
Q Consensus       618 ~d~~~i~lW~~~~  630 (809)
                      .|. .||+|++..
T Consensus       566 eDs-~VYiW~~~~  577 (712)
T KOG0283|consen  566 EDS-WVYIWKNDS  577 (712)
T ss_pred             cCc-eEEEEeCCC
Confidence            888 699999853

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.3e-27  Score=233.99  Aligned_cols=303  Identities=18%  Similarity=0.277  Sum_probs=237.4

Q ss_pred             EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc----eeeeeeecccccceEEEEEecCCCEEEEEcCCCcE
Q 003579          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (809)
Q Consensus       217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i  292 (809)
                      ..+.++ ...|.++++.|.|. .+++|+.|-+|++||+...    +..+.+.......|.+++|++.+..|++.+.....
T Consensus       161 i~l~hg-tk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  161 IQLKHG-TKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             EeccCC-ceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            344444 78899999999999 8999999999999998754    33444444566789999999999988888888899


Q ss_pred             EEEEeeCCC------CC--ceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579          293 KMWIFDTTD------GD--PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (809)
Q Consensus       293 ~vw~~~~~~------~~--~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  363 (809)
                      +++|-+...      +.  .+-+....||...++|.+|+| +...+++++.||++|+|++...+...+...         
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik---------  309 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK---------  309 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe---------
Confidence            999765431      10  111233468999999999999 456799999999999999876542221100         


Q ss_pred             ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (809)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~  443 (809)
                                                                           -....+..-.+++++|+++|+.++.|+
T Consensus       310 -----------------------------------------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc  336 (641)
T KOG0772|consen  310 -----------------------------------------------------TKPAGGKRVPVTSCAWNRDGKLIAAGC  336 (641)
T ss_pred             -----------------------------------------------------eccCCCcccCceeeecCCCcchhhhcc
Confidence                                                                 011113346889999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeeeCcccccccCccc--cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCc-eeeeee---cCCC
Q 003579          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE---VGCS  517 (809)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~  517 (809)
                      .||.|.+|+..+......+..     ..+|..  .|+++.|+++|++|++-|.|+++++||++..+ ++....   ...+
T Consensus       337 ~DGSIQ~W~~~~~~v~p~~~v-----k~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~  411 (641)
T KOG0772|consen  337 LDGSIQIWDKGSRTVRPVMKV-----KDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP  411 (641)
T ss_pred             cCCceeeeecCCcccccceEe-----eeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence            999999999866544433321     147877  99999999999999999999999999998653 333322   2367


Q ss_pred             eEEEEEeeCCCEEEEEeC------CCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579          518 LVKIVYHRVNGLLATVAD------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       518 i~~~~~s~~~~~la~~~~------d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~  588 (809)
                      -+.++|||+.++|++|..      .|.+.+||..+...+.++.-....|..+.|+|.-+.|+.++.||+++||-=++
T Consensus       412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence            788999999999999864      57899999999999999887888899999999988899999999999985443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.8e-27  Score=215.58  Aligned_cols=280  Identities=18%  Similarity=0.287  Sum_probs=221.0

Q ss_pred             EEEEEEecCCCCEEEEEc-------CCCcEEEEECCCceeeeeee-cccccceEEEEEecCC-CEEEEEcCCCcEEEEEe
Q 003579          227 VTALAFSSDGQPLLASGA-------SSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANE-PVLMSASADNSIKMWIF  297 (809)
Q Consensus       227 V~~l~fs~dg~~~lasg~-------~dg~I~iwdl~~~~~~~~~~-~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~  297 (809)
                      =.++.|||--...||++.       ..|.+.|.++...+-+.... ..-...+..++|+++. +.+++++.||++++||.
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            467889984322344332       36899999996443333332 2346789999999864 58899999999999985


Q ss_pred             eCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579          298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (809)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (809)
                      ....   .++..++.|...|.++.|++ +++.+++++.|++|++|+...+...                           
T Consensus        91 ~~~s---~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv---------------------------  140 (311)
T KOG0277|consen   91 TMPS---KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV---------------------------  140 (311)
T ss_pred             CCCC---cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce---------------------------
Confidence            4443   46788899999999999998 6777888899999999986432211                           


Q ss_pred             eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003579          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (809)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~  456 (809)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (311)
T KOG0277|consen  141 --------------------------------------------------------------------------------  140 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeeeeCcccccccCccccEEEEEEcCC-CCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEee-CCCEEEEE
Q 003579          457 ISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATV  533 (809)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~  533 (809)
                         .++        .+|...|...+|+|. ..++++++.||.+++||++.......++.+ ..|.++.|+. +..++++|
T Consensus       141 ---~Tf--------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  141 ---QTF--------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG  209 (311)
T ss_pred             ---Eee--------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence               112        289999999999994 589999999999999999854333335555 6999999998 55688999


Q ss_pred             eCCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCc-cEEEEeeeCcc-eEEEEEcC-
Q 003579          534 ADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA-RQIDAIHVDVS-ITALSLSP-  608 (809)
Q Consensus       534 ~~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~-~~i~~~~~~~~-v~~l~~sp-  608 (809)
                      +.|+.||.||++.. .++.++.||.-.|..+.|||.. ..|++++.|-++||||...+ .++.+..+|.. +..+.||+ 
T Consensus       210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF  289 (311)
T ss_pred             CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc
Confidence            99999999999875 4588899999999999999964 57899999999999999854 55667777777 89999998 


Q ss_pred             CCCeEEEEEeCCCeEEEeec
Q 003579          609 NMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       609 dg~~lat~~~d~~~i~lW~~  628 (809)
                      ++.++|+++-|+ .++||+.
T Consensus       290 ~~~~vAs~gWDe-~l~Vw~p  308 (311)
T KOG0277|consen  290 DPGQVASTGWDE-LLYVWNP  308 (311)
T ss_pred             cCceeeeccccc-ceeeecc
Confidence            778999999999 4999984

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.1e-26  Score=215.21  Aligned_cols=264  Identities=22%  Similarity=0.380  Sum_probs=212.7

Q ss_pred             EEEEeCCCeEEEEEeeCC------------eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeee
Q 003579          196 VAVGCSDGKIHVHNVRYD------------EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (809)
Q Consensus       196 la~g~~dg~i~iwd~~~~------------~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~  263 (809)
                      +++|+....|.=+++.-.            .++..+.. |.++|++++.+  |. ++|+|+.|-+|+|||+.+...+..+
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a-H~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA-HAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccc-cccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcce
Confidence            566666665555554311            12333444 48899999986  55 9999999999999999999999998


Q ss_pred             ecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEE
Q 003579          264 REAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (809)
Q Consensus       264 ~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~w  341 (809)
                      . .|.+.|+++.|.++-.  .|++|+.||.|.+|+..    .+.++..+.+|.+.|+.++.+|.|+..++.+.|+.++.|
T Consensus        80 l-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~----~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W  154 (362)
T KOG0294|consen   80 L-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG----SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW  154 (362)
T ss_pred             e-ccccceEEEEecCCcchhheeeecCCCcEEEEEcC----CeEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence            8 8999999999999775  89999999999999764    348899999999999999999999999999999999999


Q ss_pred             EeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCC
Q 003579          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (809)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (809)
                      ++.+++....+..                                                                   
T Consensus       155 NLV~Gr~a~v~~L-------------------------------------------------------------------  167 (362)
T KOG0294|consen  155 NLVRGRVAFVLNL-------------------------------------------------------------------  167 (362)
T ss_pred             hhhcCccceeecc-------------------------------------------------------------------
Confidence            9876543222110                                                                   


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579          422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (809)
Q Consensus       422 ~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw  501 (809)
                                                                        .+.  -+.+.|+|.|.+++.++. ..|-+|
T Consensus       168 --------------------------------------------------~~~--at~v~w~~~Gd~F~v~~~-~~i~i~  194 (362)
T KOG0294|consen  168 --------------------------------------------------KNK--ATLVSWSPQGDHFVVSGR-NKIDIY  194 (362)
T ss_pred             --------------------------------------------------CCc--ceeeEEcCCCCEEEEEec-cEEEEE
Confidence                                                              111  122777888887777766 457788


Q ss_pred             ECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEE--CCCCCEEEEEeCCC
Q 003579          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDG  579 (809)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~f--spdg~~l~s~s~D~  579 (809)
                      .+.+..+...+.....+.++.|- ++..|++|.+|+.|.+||..+..+...+.+|..+|.++.+  .|++.+|+|+|.||
T Consensus       195 q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  195 QLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             ecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence            88887777777766667676665 4678899999999999999999999999999999999985  56789999999999


Q ss_pred             eEEEEEcCCc
Q 003579          580 SLRIWDVILA  589 (809)
Q Consensus       580 ~I~vwd~~~~  589 (809)
                      .|+|||+...
T Consensus       274 ~I~vWd~~~~  283 (362)
T KOG0294|consen  274 FIKVWDIDME  283 (362)
T ss_pred             eEEEEEcccc
Confidence            9999999865

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1e-26  Score=250.25  Aligned_cols=272  Identities=18%  Similarity=0.323  Sum_probs=238.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l  230 (809)
                      +++++++.+++|.+|+..+++.+.. +.+|.+.|.++++..-++++++|+.|.++++||..+|++...+..| .+.|.++
T Consensus       219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh-~stv~~~  297 (537)
T KOG0274|consen  219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH-TSSVRCL  297 (537)
T ss_pred             CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC-CceEEEE
Confidence            5799999999999999999999998 9999999999999987889999999999999999999999999976 8889999


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEec
Q 003579          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR  310 (809)
Q Consensus       231 ~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~  310 (809)
                      ...+.   ++++|+.|.+|++|++.++..+..+. +|.++|.++...  ++++++|+.|++|++|++...    +++..+
T Consensus       298 ~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----~cl~sl  367 (537)
T KOG0274|consen  298 TIDPF---LLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----KCLKSL  367 (537)
T ss_pred             EccCc---eEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CCEEEEEecCceEEEEEhhhc----eeeeee
Confidence            87654   78889999999999999999999998 799999999987  789999999999999998855    789999


Q ss_pred             cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeec-ccceecchhhHHHHHhhccchhhhhccCceeEEeecccccccc
Q 003579          311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (809)
Q Consensus       311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  389 (809)
                      .||...|.++.+.+. ..+++|+.|++|++||+.+. ++...                                      
T Consensus       368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t--------------------------------------  408 (537)
T KOG0274|consen  368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT--------------------------------------  408 (537)
T ss_pred             cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh--------------------------------------
Confidence            999999999988655 79999999999999998765 22211                                      


Q ss_pred             ceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccc
Q 003579          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (809)
Q Consensus       390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~  469 (809)
                                                                                                      
T Consensus       409 --------------------------------------------------------------------------------  408 (537)
T KOG0274|consen  409 --------------------------------------------------------------------------------  408 (537)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579          470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (809)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~  547 (809)
                      +.+|..-+.++.+  .++.|++++.|++|++||..++++++.+...  ..+..+++.  ...+++++.|+.+++||++++
T Consensus       409 l~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  409 LQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             hcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence            1266666655554  4678999999999999999999999999884  777777775  578889999999999999999


Q ss_pred             eEEEEEecCC
Q 003579          548 RMVRKFEGHT  557 (809)
Q Consensus       548 ~~~~~~~~h~  557 (809)
                      +..+.+-.+.
T Consensus       485 ~~~~~l~~~~  494 (537)
T KOG0274|consen  485 TLIRTLLSTD  494 (537)
T ss_pred             chhhhhhhcc
Confidence            9988774443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5e-27  Score=230.84  Aligned_cols=296  Identities=19%  Similarity=0.273  Sum_probs=238.6

Q ss_pred             EeCC-CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEe
Q 003579          199 GCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF  277 (809)
Q Consensus       199 g~~d-g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~  277 (809)
                      ++.| ..+.+||+++|....++++.....-.++..- .+.+++++-.....|.+|.+.......... --.++|.+++-+
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~-v~Pg~v~al~s~   90 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI-VLPGPVHALASS   90 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc-ccccceeeeecC
Confidence            3334 5699999999999999987523333333322 224345444466789999987765544222 457889999999


Q ss_pred             cCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhH
Q 003579          278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (809)
Q Consensus       278 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  357 (809)
                      |+|.+|+.|+..+.|++|.+.++    .++..+.+|..+|+|+.|+.||.+|++||.||.|.+|++..--          
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv----------  156 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV----------  156 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec----------
Confidence            99999999989999999998877    6888889999999999999999999999999999999974210          


Q ss_pred             HHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCC
Q 003579          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (809)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~  437 (809)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (476)
T KOG0646|consen  157 --------------------------------------------------------------------------------  156 (476)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC--CCEEEEEeCcCeEEEEECCCCceeeeeecC
Q 003579          438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGRDLKSRWEVG  515 (809)
Q Consensus       438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  515 (809)
                         ....++        +-.....+        ..|.-+|+.+.+.+.  +.+++|++.|.++++||+..+.++.++...
T Consensus       157 ---~a~~~~--------~~~p~~~f--------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp  217 (476)
T KOG0646|consen  157 ---SADNDH--------SVKPLHIF--------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP  217 (476)
T ss_pred             ---ccccCC--------Cccceeee--------ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC
Confidence               111111        11111222        289999999998775  478999999999999999999999999999


Q ss_pred             CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC----------------eEEEEEecCCC--CeeeEEECCCCCEEEEEeC
Q 003579          516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL----------------RMVRKFEGHTD--RITDFCFSEDGKWLLSSGM  577 (809)
Q Consensus       516 ~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~----------------~~~~~~~~h~~--~I~~l~fspdg~~l~s~s~  577 (809)
                      ..+.+++..|.+..+.+|+.+|.|.+.++...                ..+..+.||.+  .|++++.+-||..|++|+.
T Consensus       218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~  297 (476)
T KOG0646|consen  218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE  297 (476)
T ss_pred             CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence            99999999999999999999999999887543                34667889998  9999999999999999999


Q ss_pred             CCeEEEEEcCCccEEEEee-eCcceEEEEEcCC
Q 003579          578 DGSLRIWDVILARQIDAIH-VDVSITALSLSPN  609 (809)
Q Consensus       578 D~~I~vwd~~~~~~i~~~~-~~~~v~~l~~spd  609 (809)
                      ||.|+|||+.+.++++++. ..++|+.+.+.|=
T Consensus       298 dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  298 DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             CCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            9999999999999999988 6778999999664

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=7e-27  Score=229.28  Aligned_cols=284  Identities=23%  Similarity=0.325  Sum_probs=232.8

Q ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEE-EEe----------------ccCCCcEEEEEEecCC
Q 003579          174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TFT----------------HSMRGAVTALAFSSDG  236 (809)
Q Consensus       174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~-~~~----------------~~~~~~V~~l~fs~dg  236 (809)
                      ...+..|.-+|++++++|+..++.+++.+|+|.=|++.+++... .+.                ..|...+.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            56678899999999999999999999999999999998887431 111                1346789999999999


Q ss_pred             CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579          237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (809)
Q Consensus       237 ~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (809)
                      + +||+|+.|..|.||+.++.+.+..+. +|.+.|.+++|-.+...|++++.|+++++|+++..    ..+.++.||...
T Consensus       215 k-ylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetlyGHqd~  288 (479)
T KOG0299|consen  215 K-YLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETLYGHQDG  288 (479)
T ss_pred             c-EEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHHhCCccc
Confidence            9 99999999999999999999999988 99999999999998889999999999999998876    567778899999


Q ss_pred             CeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579          317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (809)
Q Consensus       317 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (809)
                      |..|.-..-++.+-+|+.|+++++|++....+..                                              
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli----------------------------------------------  322 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI----------------------------------------------  322 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEeccccceee----------------------------------------------
Confidence            9999999888888888899999999973321100                                              


Q ss_pred             cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcccc
Q 003579          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE  476 (809)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~  476 (809)
                                                                                               ..+|.+.
T Consensus       323 -------------------------------------------------------------------------frg~~~s  329 (479)
T KOG0299|consen  323 -------------------------------------------------------------------------FRGGEGS  329 (479)
T ss_pred             -------------------------------------------------------------------------eeCCCCC
Confidence                                                                                     0256667


Q ss_pred             EEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-------------CCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVADDLVIRLFD  543 (809)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~i~~~~~s~~~~~la~~~~d~~I~v~d  543 (809)
                      +-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+....             ..|++++..|...++|+|+.+|.|++|-
T Consensus       330 idcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  330 IDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK  408 (479)
T ss_pred             eeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence            777777644 46788888888888888877777655321             2789999999999999999999999999


Q ss_pred             cCCC----eEEEEEecCCCCeeeEEECCCCCEEEEE-eCCCeEEEE
Q 003579          544 VVAL----RMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIW  584 (809)
Q Consensus       544 ~~~~----~~~~~~~~h~~~I~~l~fspdg~~l~s~-s~D~~I~vw  584 (809)
                      +..+    +++..+. -.+-|++++|+++|++|++| +....+--|
T Consensus       409 i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  409 IEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             ecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence            9877    3444444 56889999999999977665 444444334

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6e-27  Score=229.54  Aligned_cols=284  Identities=18%  Similarity=0.281  Sum_probs=241.2

Q ss_pred             ccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC-EEEEEECCCCEEEEEeeec
Q 003579          268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD  346 (809)
Q Consensus       268 ~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~  346 (809)
                      .++|+++.|+|..++|++++.|+.+++|.++....  ..+..+.--..||.+.+|+|+|+ .+++++....+..||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            46899999999999999999999999999987654  34555556678999999999998 8999999999999998655


Q ss_pred             ccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC-CC
Q 003579          347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-PT  425 (809)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~  425 (809)
                      +..+.-.                                                                  ..++ ..
T Consensus       291 k~~k~~~------------------------------------------------------------------~~g~e~~  304 (514)
T KOG2055|consen  291 KVTKLKP------------------------------------------------------------------PYGVEEK  304 (514)
T ss_pred             ccccccC------------------------------------------------------------------CCCcccc
Confidence            4322110                                                                  0011 24


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC
Q 003579          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  505 (809)
                      .+....+|+|++++++.+..|.|.+....+++.+..+         .-.+.|.+++|+.+++.|++++.+|.|.+||++.
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~  375 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ  375 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence            5677899999999999999999999999999999887         4678999999999999999999999999999999


Q ss_pred             CceeeeeecCCCe--EEEEEeeCCCEEEEEeCCCeEEEEEcCC------CeEEEEEecCCCCeeeEEECCCCCEEEEEe-
Q 003579          506 RDLKSRWEVGCSL--VKIVYHRVNGLLATVADDLVIRLFDVVA------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG-  576 (809)
Q Consensus       506 ~~~~~~~~~~~~i--~~~~~s~~~~~la~~~~d~~I~v~d~~~------~~~~~~~~~h~~~I~~l~fspdg~~l~s~s-  576 (809)
                      ..+++++...+.+  +++|.++++.++|+|++.|.|.|||.++      .+++..+..-...|++|+|+||++.||.+| 
T Consensus       376 ~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  376 NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence            9999998776544  5677789999999999999999999654      466777777788999999999999998777 


Q ss_pred             -CCCeEEEEEcCCccEEEEeeeCcc----eEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          577 -MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       577 -~D~~I~vwd~~~~~~i~~~~~~~~----v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                       .+..+|+-.+++......+.....    |+||+|||.|.|||.|..+++ |.||.+.
T Consensus       456 ~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr-v~l~kL~  512 (514)
T KOG2055|consen  456 VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR-VHLFKLH  512 (514)
T ss_pred             ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc-eeeEeec
Confidence             577899999999888887765442    999999999999999999995 9999875

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.5e-27  Score=242.94  Aligned_cols=352  Identities=17%  Similarity=0.253  Sum_probs=272.2

Q ss_pred             eCCEEEEEeCCCcEEEEEcCCCccc-cc-eeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC--ceEEEE
Q 003579          102 FGEHILSIDIDGNMFIWAFKGIEEN-LA-PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK--KKLYEF  177 (809)
Q Consensus       102 ~g~~l~s~~~dg~i~vWd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~--~~~~~~  177 (809)
                      .+++|+|++.||.|++|++...... .. .+..++.|..++..++..-.+  +.++++|.|-+|.+|+...+  -++.++
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~--~tlIS~SsDtTVK~W~~~~~~~~c~sti  113 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG--KTLISASSDTTVKVWNAHKDNTFCMSTI  113 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC--CceEEecCCceEEEeecccCcchhHhhh
Confidence            4788999999999999998754331 11 256677788877777766666  68999999999999999877  577788


Q ss_pred             cCCCCCEEEEEE-cCCCCEEEEEeCCCeEEEEEeeCC--eEEEEEe--------ccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579          178 KGWGSSISSCVS-SPALDVVAVGCSDGKIHVHNVRYD--EELVTFT--------HSMRGAVTALAFSSDGQPLLASGASS  246 (809)
Q Consensus       178 ~~~~~~I~~l~~-sp~~~~la~g~~dg~i~iwd~~~~--~~~~~~~--------~~~~~~V~~l~fs~dg~~~lasg~~d  246 (809)
                      ..|...|.|+++ .++..++|+|+-|+.|.+||+.++  +.+.++.        .++..+|++++-.+.|. ++++|+..
T Consensus       114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgte  192 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTE  192 (735)
T ss_pred             hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcc
Confidence            999999999999 888999999999999999999987  3333332        24577999999999997 99999999


Q ss_pred             CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC
Q 003579          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (809)
Q Consensus       247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (809)
                      +.|++||.++++.+..++ +|+..|..+..++||..++++|.||+|++||+...    +++.++..|...|.++..+|+-
T Consensus       193 k~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf  267 (735)
T KOG0308|consen  193 KDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF  267 (735)
T ss_pred             cceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc
Confidence            999999999999999999 99999999999999999999999999999998766    7888899999999999999999


Q ss_pred             CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEE
Q 003579          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (809)
Q Consensus       327 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (809)
                      .++++|+.||.|..-|+++......+-.                                                    
T Consensus       268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick----------------------------------------------------  295 (735)
T KOG0308|consen  268 THVYSGGRDGNIYRTDLRNPAKSTLICK----------------------------------------------------  295 (735)
T ss_pred             ceEEecCCCCcEEecccCCchhheEeec----------------------------------------------------
Confidence            9999999999999988876522111100                                                    


Q ss_pred             eeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC
Q 003579          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (809)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  486 (809)
                                      ...++..+......+-+-+++.|+.|..|...-..                       ++++.+
T Consensus       296 ----------------~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~-----------------------~l~~s~  336 (735)
T KOG0308|consen  296 ----------------EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI-----------------------ALSVSG  336 (735)
T ss_pred             ----------------CCCchhhhhhccccCCceeeeccccceecCCcccc-----------------------ccccCC
Confidence                            11344444455444445777888888888754321                       223333


Q ss_pred             CEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 003579          487 TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (809)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~  554 (809)
                      ++.. -+.|......+... .+-..+.++.+|...++-.|.+.+++-...|.+.+||+-..+.+..|.
T Consensus       337 ~~~~-~~T~~~~~~~~~~~-tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  337 DLDF-FSTDSNNHSCDLTN-TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             CCCc-ccccCCCccccccC-CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            3332 22223333333211 334445566777777888889999999999999999998777766654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.9e-27  Score=217.43  Aligned_cols=307  Identities=18%  Similarity=0.363  Sum_probs=259.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~  231 (809)
                      .+|++...++++.      .++++.+.||...|..++.......+.+++.|.+.+||.++++.++.++.+| .+.|.++.
T Consensus       125 srivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH-~GSVNsik  197 (481)
T KOG0300|consen  125 SRIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH-TGSVNSIK  197 (481)
T ss_pred             chheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc-ccceeeEE
Confidence            4577777777633      3566778999999999998887789999999999999999999999999887 89999999


Q ss_pred             EecCCCCEEEEEcCCCcEEEEECC------C------------------------------c----eeeeeeecccccce
Q 003579          232 FSSDGQPLLASGASSGVISIWNLE------K------------------------------R----RLQSVIREAHDNAI  271 (809)
Q Consensus       232 fs~dg~~~lasg~~dg~I~iwdl~------~------------------------------~----~~~~~~~~~h~~~V  271 (809)
                      |++.+. ++++++.|++-.||...      .                              +    .++..+. +|.+.|
T Consensus       198 fh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV  275 (481)
T KOG0300|consen  198 FHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVV  275 (481)
T ss_pred             eccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccce
Confidence            999998 99999999999999621      0                              0    1233344 799999


Q ss_pred             EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccccee
Q 003579          272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (809)
Q Consensus       272 ~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  351 (809)
                      .+..|...+..+++++.|.+..+||++++    .++..+.||....+.++-+|..+++++++.|.+.++||++..     
T Consensus       276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----  346 (481)
T KOG0300|consen  276 SACDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----  346 (481)
T ss_pred             EehhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----
Confidence            99999999999999999999999999887    678889999999999999999999999999999999997521     


Q ss_pred             cchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE
Q 003579          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (809)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~  431 (809)
                                                                                                 |.+++
T Consensus       347 ---------------------------------------------------------------------------I~sV~  351 (481)
T KOG0300|consen  347 ---------------------------------------------------------------------------IQSVA  351 (481)
T ss_pred             ---------------------------------------------------------------------------cceee
Confidence                                                                                       11111


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-ceee
Q 003579          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS  510 (809)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~  510 (809)
                      +                             |        .+|...|+++.|.-+. .+++++.|.+|++||+++. .++.
T Consensus       352 V-----------------------------F--------QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplA  393 (481)
T KOG0300|consen  352 V-----------------------------F--------QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLA  393 (481)
T ss_pred             e-----------------------------e--------cccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcce
Confidence            1                             1        3899999999998765 5889999999999999864 6788


Q ss_pred             eeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEE----EEecCCCCeeeEEECCCC--CEEEEEeCCCeEEEE
Q 003579          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR----KFEGHTDRITDFCFSEDG--KWLLSSGMDGSLRIW  584 (809)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~----~~~~h~~~I~~l~fspdg--~~l~s~s~D~~I~vw  584 (809)
                      ++...++++.++.+..+..+|.-.++..|++||+...++.+    .-+||...|++++|..+-  .-|++++.|..+.=|
T Consensus       394 TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW  473 (481)
T KOG0300|consen  394 TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW  473 (481)
T ss_pred             eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence            99999999999999999999999999999999998765433    345899999999998754  347899999999999


Q ss_pred             EcCCc
Q 003579          585 DVILA  589 (809)
Q Consensus       585 d~~~~  589 (809)
                      .+...
T Consensus       474 ~in~p  478 (481)
T KOG0300|consen  474 KINTP  478 (481)
T ss_pred             Eeccc
Confidence            98653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.2e-27  Score=211.64  Aligned_cols=259  Identities=15%  Similarity=0.271  Sum_probs=215.3

Q ss_pred             eEEEEEC--CeeEEEE--ccccccEEEEEEe---CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC
Q 003579           76 HIAVVKR--AHQVATW--SRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD  148 (809)
Q Consensus        76 ~i~vw~~--~~~~~~~--~~h~~~V~~l~~~---g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  148 (809)
                      .+.|-+.  ++.+.+.  ..-.+.+..+++.   .+.+++++.||++++||+.....   |+..++-|...+.++-+++.
T Consensus        39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~  115 (311)
T KOG0277|consen   39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTV  115 (311)
T ss_pred             eEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccc
Confidence            4777765  3334442  2345678888884   67889999999999999654433   56777778888888888876


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcE
Q 003579          149 TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV  227 (809)
Q Consensus       149 ~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V  227 (809)
                      .. ..+++++.|++|++|+...++-+.+|.+|...|...+|+|. .+++++++.||++++||++.....+.+..| ...|
T Consensus       116 ~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Ei  193 (311)
T KOG0277|consen  116 RR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEI  193 (311)
T ss_pred             cc-eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-ccee
Confidence            64 56777899999999999999999999999999999999994 689999999999999999876555557766 6899


Q ss_pred             EEEEEecCCCCEEEEEcCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCCCce
Q 003579          228 TALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPR  305 (809)
Q Consensus       228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~  305 (809)
                      .|+.|+.-...+|+||+.|+.|+.||+++- ..+..+. +|.-.|+.++|+|-. .+|++++.|-++++|+...++   .
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---s  269 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---S  269 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccccch---h
Confidence            999999988889999999999999999886 4566665 999999999999965 489999999999999987665   3


Q ss_pred             eEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEe
Q 003579          306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~  343 (809)
                      .+.....|+..+..+.|++ ++.++++++.|+.+.+|+.
T Consensus       270 ~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  270 AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            4555668999999999998 7889999999999999983

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=3.3e-26  Score=222.48  Aligned_cols=276  Identities=17%  Similarity=0.305  Sum_probs=234.9

Q ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCC
Q 003579          145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR  224 (809)
Q Consensus       145 ~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~  224 (809)
                      ..|..  +++++|+.|..+.++|..+++.+..|+||...|+.+.++|+.+.+++++.|-.|+||.............| .
T Consensus       227 ~~~s~--~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h-~  303 (506)
T KOG0289|consen  227 IIPSS--SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPH-E  303 (506)
T ss_pred             ecCCC--CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccc-c
Confidence            44554  78999999999999999999999999999999999999999999999999999999999877766665554 8


Q ss_pred             CcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecc-cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       225 ~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      ++|+.+..+|.|. +|++++.||...+.|++++..+...... ..-.+++.+|+|||.++.+|..|+.+++||+..++  
T Consensus       304 ~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--  380 (506)
T KOG0289|consen  304 EPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--  380 (506)
T ss_pred             ccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--
Confidence            9999999999999 8889999999999999999988877621 22458999999999999999999999999987764  


Q ss_pred             ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecc
Q 003579          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (809)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  383 (809)
                        .+..+.+|.++|..++|+.+|-+|+++..|+.|++||++.....+.+..                             
T Consensus       381 --~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l-----------------------------  429 (506)
T KOG0289|consen  381 --NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL-----------------------------  429 (506)
T ss_pred             --ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec-----------------------------
Confidence              4666789999999999999999999999999999999987654443321                             


Q ss_pred             ccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeee
Q 003579          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG--ISRGS  461 (809)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~--~~~~~  461 (809)
                                                            .....+.++.|.+.|.++++++++=.|+++.-.+.  .....
T Consensus       430 --------------------------------------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~  471 (506)
T KOG0289|consen  430 --------------------------------------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE  471 (506)
T ss_pred             --------------------------------------cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence                                                  11247899999999999999987777777764433  23333


Q ss_pred             eeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (809)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  503 (809)
                      +        ..|.+..+++.|....+++++++.|..++++.+
T Consensus       472 ~--------~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  472 L--------ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             h--------hhcccccceeeecccceEEeeccchhheEEeec
Confidence            3        378889999999999999999999999988764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.7e-26  Score=212.73  Aligned_cols=292  Identities=20%  Similarity=0.265  Sum_probs=216.4

Q ss_pred             cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee--eeeee-cccccceEEEEEecCCC-EEEEEcCCCcEEEEEe
Q 003579          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL--QSVIR-EAHDNAIISLHFFANEP-VLMSASADNSIKMWIF  297 (809)
Q Consensus       222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~--~~~~~-~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~  297 (809)
                      +|.+.|++++|+.||+ .||+++.|+.|++|+++.-..  .+.++ .-..+-.+.+.|.||-+ .++++-..+++++|.+
T Consensus        84 gH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~  162 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL  162 (420)
T ss_pred             ccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence            3488999999999999 999999999999999876421  11111 01123568899999987 4555566778999987


Q ss_pred             eCCCCCc--------eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhh
Q 003579          298 DTTDGDP--------RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (809)
Q Consensus       298 ~~~~~~~--------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (809)
                      ...+...        ..+.....|..++..+-...++++|++++.|..|.+|++. ++....+.                
T Consensus       163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id----------------  225 (420)
T KOG2096|consen  163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID----------------  225 (420)
T ss_pred             eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec----------------
Confidence            6543211        1122334677788888888899999999999999999987 43333321                


Q ss_pred             hhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003579          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (809)
Q Consensus       370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~  449 (809)
                                                                          .+...-+..++||||+|+++++-.-.|.
T Consensus       226 ----------------------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVk  253 (420)
T KOG2096|consen  226 ----------------------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVK  253 (420)
T ss_pred             ----------------------------------------------------cccccccceeeCCCCcEEEEecCCCCce
Confidence                                                                2224556778999999999999999999


Q ss_pred             EEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-------ceeeee-----ecCCC
Q 003579          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLKSRW-----EVGCS  517 (809)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~-----~~~~~  517 (809)
                      +|..--++.-..........+.+|...|..++|+++.+.+++.+.||++++||++-.       +.++..     ...+.
T Consensus       254 VwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~  333 (420)
T KOG2096|consen  254 VWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE  333 (420)
T ss_pred             EEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence            998633221111011111234699999999999999999999999999999997521       222222     11245


Q ss_pred             eEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-cCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       518 i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      ...+.++|+|+.||++. ...+++|..++++...+++ .|...|++++|+++|++++|++ |..+++..
T Consensus       334 p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  334 PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            56899999999998775 4579999999998777765 4899999999999999999998 78888876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.6e-26  Score=211.71  Aligned_cols=277  Identities=19%  Similarity=0.312  Sum_probs=221.7

Q ss_pred             EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC-ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579          218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (809)
Q Consensus       218 ~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~  296 (809)
                      .+.....+.|.+|+|||....+++.|+.||+||+|+++. |..+......|.++|.+++|+.||..+++|+.|+.+++||
T Consensus        21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            344455789999999996666888999999999999987 4555555557999999999999999999999999999999


Q ss_pred             eeCCCCCceeEEeccCCCCCCeeEEEecCCC--EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (809)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (809)
                      +..+     .......|.++|.++.|-+...  .|++|+.|.+|+.||.+...+...+..                    
T Consensus       101 L~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--------------------  155 (347)
T KOG0647|consen  101 LASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--------------------  155 (347)
T ss_pred             ccCC-----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--------------------
Confidence            9876     2445568999999999998554  899999999999999987665544321                    


Q ss_pred             ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (809)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~  454 (809)
                                                                       +..+.++  +---..+++++.+..|.+|+++
T Consensus       156 -------------------------------------------------PeRvYa~--Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  156 -------------------------------------------------PERVYAA--DVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             -------------------------------------------------cceeeeh--hccCceeEEEecCCcEEEEEcC
Confidence                                                             1223322  2234678999999999999998


Q ss_pred             CCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCce--eeeeecC----------CCeEEEE
Q 003579          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVG----------CSLVKIV  522 (809)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~----------~~i~~~~  522 (809)
                      .+.......      ...-+-.++++++.++++..+.|+-+|.+.+..+..+..  -..++.+          ..|++++
T Consensus       185 n~~te~k~~------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  185 NPPTEFKRI------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             CCcchhhhh------cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            765433221      013455789999999998889999999999999887632  2233322          3578899


Q ss_pred             EeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe
Q 003579          523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       523 ~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s  576 (809)
                      |+|.-..|++++.||++.+||-+....+.+.+.|..+|++.+|+.+|.+++.+.
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            999999999999999999999998888888889999999999999999998663

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.2e-26  Score=249.44  Aligned_cols=291  Identities=20%  Similarity=0.247  Sum_probs=234.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe--CCCeEEEEEeeC------------CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC
Q 003579          180 WGSSISSCVSSPALDVVAVGC--SDGKIHVHNVRY------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (809)
Q Consensus       180 ~~~~I~~l~~sp~~~~la~g~--~dg~i~iwd~~~------------~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~  245 (809)
                      +...|.++..+|++..+|+|+  .||.++||+...            .+.+.+... |.+.|+|+.|++||+ +||+|++
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~-~lAsGSD   89 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGS-YLASGSD   89 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCC-eEeeccC
Confidence            356799999999999999999  899999998752            223344444 489999999999999 9999999


Q ss_pred             CCcEEEEECCC------------------ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE
Q 003579          246 SGVISIWNLEK------------------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (809)
Q Consensus       246 dg~I~iwdl~~------------------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~  307 (809)
                      |+.|.||....                  -+....+. +|.+.|..++|+|++.+|++++.|++|.+|+..+-    ..+
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF----~~~  164 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF----ELL  164 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccc----eee
Confidence            99999999872                  03556666 89999999999999999999999999999976554    678


Q ss_pred             EeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccccc
Q 003579          308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (809)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  387 (809)
                      +.+.+|...|..+.|.|-|++|++-+.|++|++|.+..-...+.+.....                              
T Consensus       165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~------------------------------  214 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE------------------------------  214 (942)
T ss_pred             eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh------------------------------
Confidence            88899999999999999999999999999999999655333332221000                              


Q ss_pred             ccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeeeee
Q 003579          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----GWIERFNLQSGISRGSYL  463 (809)
Q Consensus       388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~----g~i~i~~~~~~~~~~~~~  463 (809)
                                                      ..........+.|||||.+|++...-    ..+.+.+-.+-..-..+.
T Consensus       215 --------------------------------~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv  262 (942)
T KOG0973|consen  215 --------------------------------ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV  262 (942)
T ss_pred             --------------------------------hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee
Confidence                                            00112567889999999999986432    366777765555555554


Q ss_pred             CcccccccCccccEEEEEEcCC-----CC------------EEEEEeCcCeEEEEECCCCceeeeeec--CCCeEEEEEe
Q 003579          464 DMSERSNYAHNGEVVGVACDST-----NT------------LMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH  524 (809)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~-----~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s  524 (809)
                              +|.+++.++.|+|.     .+            .+|+|+.|++|.||.....+++..+..  ...|..++|+
T Consensus       263 --------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs  334 (942)
T KOG0973|consen  263 --------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS  334 (942)
T ss_pred             --------cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc
Confidence                    99999999999872     12            678899999999999987777665543  3899999999


Q ss_pred             eCCCEEEEEeCCCeEEEEEcCCC
Q 003579          525 RVNGLLATVADDLVIRLFDVVAL  547 (809)
Q Consensus       525 ~~~~~la~~~~d~~I~v~d~~~~  547 (809)
                      |||-.|.+++.||+|.++..+..
T Consensus       335 pdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  335 PDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CCCCeEEEEecCCeEEEEEcchH
Confidence            99999999999999999988754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-25  Score=209.44  Aligned_cols=284  Identities=23%  Similarity=0.384  Sum_probs=224.9

Q ss_pred             EEEEEeCCCeEEEEeCCC------------CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579          153 KVIVGSQEGSLQLWNIST------------KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (809)
Q Consensus       153 ~l~~~~~dg~i~lwd~~~------------~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (809)
                      .|++|+....|.-+++.-            ..+++.+..|.++|++++.+  +.++|+|+.|-+|+|||+++...+..+.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            467777777666665431            12366778999999999987  7899999999999999999999999888


Q ss_pred             ccCCCcEEEEEEecCCC-CEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579          221 HSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (809)
Q Consensus       221 ~~~~~~V~~l~fs~dg~-~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~  299 (809)
                      .| .+.|+++.|.++-. ..|++|+.||.|.+|+...-.++..++ +|.+.|+.++.+|.+++-++.+.|+.++.|++-.
T Consensus        81 ~H-agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen   81 SH-AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             cc-ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-ccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence            76 89999999998752 358899999999999999999999999 9999999999999999999999999999998866


Q ss_pred             CCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEE
Q 003579          300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  379 (809)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  379 (809)
                      +....  ...+ ++  ..+.+.|+|.|.+++.++.++ |-+|.+.......++..                         
T Consensus       159 Gr~a~--v~~L-~~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~-------------------------  207 (362)
T KOG0294|consen  159 GRVAF--VLNL-KN--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN-------------------------  207 (362)
T ss_pred             Cccce--eecc-CC--cceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc-------------------------
Confidence            53321  1111 22  334599999999999988876 88888765443333211                         


Q ss_pred             eeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 003579          380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  459 (809)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~  459 (809)
                                                                  +..+.++.| -++..+++|..++.|.+||..++...
T Consensus       208 --------------------------------------------~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~  242 (362)
T KOG0294|consen  208 --------------------------------------------PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPL  242 (362)
T ss_pred             --------------------------------------------cccceeeee-cCCceEEEecCCceEEEeccCCCccc
Confidence                                                        122333333 25789999999999999999998888


Q ss_pred             eeeeCcccccccCccccEEEEEE--cCCCCEEEEEeCcCeEEEEECCCC-----ceeeeeecCCCeEEEEEe
Q 003579          460 GSYLDMSERSNYAHNGEVVGVAC--DSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSLVKIVYH  524 (809)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~i~~~~~s  524 (809)
                      ..+.        +|...|.++.+  .|++.+|++++.||.|++||+...     +++..+..+..++|+...
T Consensus       243 ~~~~--------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~  306 (362)
T KOG0294|consen  243 TEFL--------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK  306 (362)
T ss_pred             eeee--------cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence            7776        99999999984  567899999999999999999866     566666666666666543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.2e-26  Score=226.40  Aligned_cols=293  Identities=19%  Similarity=0.316  Sum_probs=232.3

Q ss_pred             CeEEEEeCCCCceEEEEcCC-CCCEEEEEEcCCCCEEEEEe-CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579          161 GSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (809)
Q Consensus       161 g~i~lwd~~~~~~~~~~~~~-~~~I~~l~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~  238 (809)
                      .++.+||+++|....++++- ...-.++..- .+.+++++. ....+.+|.+........... -.++|.+++-+|+|. 
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v-~Pg~v~al~s~n~G~-   94 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV-LPGPVHALASSNLGY-   94 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcc-cccceeeeecCCCce-
Confidence            45999999999999999874 1111111111 224666654 446899999876655542222 268999999999998 


Q ss_pred             EEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC-----CCCCceeEEeccCC
Q 003579          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-----TDGDPRLLRFRSGH  313 (809)
Q Consensus       239 ~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~-----~~~~~~~~~~~~~h  313 (809)
                      +|+.|+..|.|++|.+.+|.++..+. +|...|+++.|+.|+.+++|||.||.|.+|.+..     .+..+..+..+..|
T Consensus        95 ~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H  173 (476)
T KOG0646|consen   95 FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH  173 (476)
T ss_pred             EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence            78878799999999999999999997 9999999999999999999999999999998742     23356778889999


Q ss_pred             CCCCeeEEEecC--CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccce
Q 003579          314 SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (809)
Q Consensus       314 ~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  391 (809)
                      .-+|+.+...+.  ..+++++|.|+++++||+..+.....+.                                      
T Consensus       174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--------------------------------------  215 (476)
T KOG0646|consen  174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--------------------------------------  215 (476)
T ss_pred             cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--------------------------------------
Confidence            999999988764  4689999999999999997764433321                                      


Q ss_pred             eEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--e------eeee
Q 003579          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS--R------GSYL  463 (809)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~--~------~~~~  463 (809)
                                                     .+..+.+++++|-++.+++|+++|.|.+.++..-..  .      ....
T Consensus       216 -------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~  264 (476)
T KOG0646|consen  216 -------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE  264 (476)
T ss_pred             -------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence                                           237899999999999999999999999988754331  1      1111


Q ss_pred             CcccccccCccc--cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee-cCCCeEEEEEeeC
Q 003579          464 DMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRV  526 (809)
Q Consensus       464 ~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~~  526 (809)
                      ......+.+|.+  +|+|++++-||.+|++|+.||.|.+||..+.++++++. ..++|+.+.+.|-
T Consensus       265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            222234568888  99999999999999999999999999999999999998 6689998888663

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5e-26  Score=212.33  Aligned_cols=279  Identities=19%  Similarity=0.338  Sum_probs=209.4

Q ss_pred             EEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCcee
Q 003579          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL  306 (809)
Q Consensus       227 V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~  306 (809)
                      ..|+.|++.|. +||+|+.||.|.|||+.+...-..+. +|..+|++++|+++|+.|+|++.|..|++||+..++.    
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~----   99 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP----   99 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc----
Confidence            78999999999 99999999999999999999887887 9999999999999999999999999999999987753    


Q ss_pred             EEeccCCCCCCeeEEEecCCC-EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccc
Q 003579          307 LRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  385 (809)
Q Consensus       307 ~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  385 (809)
                      ++.. ....+|..+.|+|..+ ..+.+-.+..-.+.++..+                                       
T Consensus       100 l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---------------------------------------  139 (405)
T KOG1273|consen  100 LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---------------------------------------  139 (405)
T ss_pred             eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC---------------------------------------
Confidence            2222 4568999999999432 2222222222222222110                                       


Q ss_pred             ccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCc
Q 003579          386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  465 (809)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~  465 (809)
                                                              .-+.+..+++|..                           
T Consensus       140 ----------------------------------------~h~~Lp~d~d~dl---------------------------  152 (405)
T KOG1273|consen  140 ----------------------------------------KHSVLPKDDDGDL---------------------------  152 (405)
T ss_pred             ----------------------------------------ceeeccCCCcccc---------------------------
Confidence                                                    0011111111110                           


Q ss_pred             ccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFD  543 (809)
Q Consensus       466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~d  543 (809)
                              +..-.+..|++.|+++++|...|.+.++|..+.+++..++..  ..|.++.++..|+.++..+.|..||.|+
T Consensus       153 --------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  153 --------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             --------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence                    111112267888999999999999999999999988887665  6889999999999999999999999999


Q ss_pred             cCCC-------e--EEEEEec--CCCCeeeEEECCCCCEEEEEe-CCCeEEEEEcCCccEEEEeeeCcc--eEEEEEcCC
Q 003579          544 VVAL-------R--MVRKFEG--HTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS--ITALSLSPN  609 (809)
Q Consensus       544 ~~~~-------~--~~~~~~~--h~~~I~~l~fspdg~~l~s~s-~D~~I~vwd~~~~~~i~~~~~~~~--v~~l~~spd  609 (809)
                      +..-       +  +..+++.  ..-.-.+++||.||.|++.++ .-..++||.-..|.+++.+++...  ...+.|+|-
T Consensus       225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence            8631       1  1111111  122345789999999998776 567899999999999999998763  889999999


Q ss_pred             CCeEEEEEeCCCeEEEeec
Q 003579          610 MDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       610 g~~lat~~~d~~~i~lW~~  628 (809)
                      ...+++. ..| .|++|..
T Consensus       305 rp~i~si-~sg-~v~iw~~  321 (405)
T KOG1273|consen  305 RPIIASI-ASG-VVYIWAV  321 (405)
T ss_pred             eeeeeec-cCC-ceEEEEe
Confidence            9999888 344 5999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.3e-27  Score=224.35  Aligned_cols=292  Identities=15%  Similarity=0.230  Sum_probs=245.5

Q ss_pred             EEEEccccccEEEEEEeC---CEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCe
Q 003579           86 VATWSRHSAKVNLLLLFG---EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS  162 (809)
Q Consensus        86 ~~~~~~h~~~V~~l~~~g---~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~  162 (809)
                      ++.+.||...|.+++-..   ..++||+.||.|++||+...++    ..+++.|.+++...++..    +.+++++.|.+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKt  130 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----IRTFKAHEGLVRGICVTQ----TSFFTVGDDKT  130 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh----hheeecccCceeeEEecc----cceEEecCCcc
Confidence            455889999999999643   5689999999999999999888    788888999988888877    34888889999


Q ss_pred             EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEE
Q 003579          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (809)
Q Consensus       163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~las  242 (809)
                      |+.|.+.. .+++++.+ .+.+..+.-+..+..+|+++.  .|.|||..-..++.++..+ ...|.++.|+|-...+|++
T Consensus       131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  131 VKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILAS  205 (433)
T ss_pred             eeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecC-CCceeEEecCCCcchheee
Confidence            99999854 58888876 566777777777888898886  5999999999999999987 6789999999998889999


Q ss_pred             EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEE
Q 003579          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (809)
Q Consensus       243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (809)
                      |+.|+.|.+||++++.++..+.  -...-+.++|+|.+-.+++++.|..+..+|+....   +.+....+|...|.++.|
T Consensus       206 ~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVdf  280 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVDF  280 (433)
T ss_pred             eccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEecc
Confidence            9999999999999998887775  44556889999988889999999999999887654   567778899999999999


Q ss_pred             ecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceE
Q 003579          323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (809)
Q Consensus       323 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (809)
                      +|.|+-+++||.|.+|++|.+..+........                                                
T Consensus       281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYht------------------------------------------------  312 (433)
T KOG0268|consen  281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT------------------------------------------------  312 (433)
T ss_pred             CCCcchhccccccceEEEeecCCCcchhhhhH------------------------------------------------
Confidence            99999999999999999999865532221111                                                


Q ss_pred             EEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (809)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (809)
                             +            ....|.++.||.|.+|+++|+.|+.|++|.....+....+
T Consensus       313 -------k------------RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  313 -------K------------RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             -------h------------hhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence                   0            0167899999999999999999999999998766555444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-26  Score=237.04  Aligned_cols=346  Identities=18%  Similarity=0.266  Sum_probs=270.1

Q ss_pred             EEEEc-CCCCEEEEEeCCCeEEEEEeeCCeE------EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc-
Q 003579          186 SCVSS-PALDVVAVGCSDGKIHVHNVRYDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-  257 (809)
Q Consensus       186 ~l~~s-p~~~~la~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~-  257 (809)
                      ++..+ |.+++|.+|+.||.|++|+......      +.++.. |...|..+....+|+ .|++++.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCc
Confidence            34444 4567899999999999999875443      445544 489999999999998 7999999999999999887 


Q ss_pred             -eeeeeeecccccceEEEEE-ecCCCEEEEEcCCCcEEEEEeeCCCC------CceeEEecc-CCCCCCeeEEEecCCCE
Q 003579          258 -RLQSVIREAHDNAIISLHF-FANEPVLMSASADNSIKMWIFDTTDG------DPRLLRFRS-GHSAPPLCIRFYANGRH  328 (809)
Q Consensus       258 -~~~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~d~~i~vw~~~~~~~------~~~~~~~~~-~h~~~v~~i~~~~~~~~  328 (809)
                       -+..++. .|...|.|+++ .++..++++||-|+.|.+||++....      ......... |+..+|++++..+.|..
T Consensus       107 ~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~  185 (735)
T KOG0308|consen  107 TFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI  185 (735)
T ss_pred             chhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence             5777777 89999999999 77888999999999999999986632      111122223 89999999999999999


Q ss_pred             EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (809)
Q Consensus       329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (809)
                      +++|+..+.+++||.++......+                                                        
T Consensus       186 ivsGgtek~lr~wDprt~~kimkL--------------------------------------------------------  209 (735)
T KOG0308|consen  186 IVSGGTEKDLRLWDPRTCKKIMKL--------------------------------------------------------  209 (735)
T ss_pred             EEecCcccceEEeccccccceeee--------------------------------------------------------
Confidence            999999999999998876554433                                                        


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (809)
                                  .+|...|+++.+++||+.++++++||+|++||+...+++.++.        .|...|.++..+|+-+.
T Consensus       210 ------------rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~--------vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  210 ------------RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI--------VHKEGVWALQSSPSFTH  269 (735)
T ss_pred             ------------eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--------eccCceEEEeeCCCcce
Confidence                        2677999999999999999999999999999999999999986        89999999999999999


Q ss_pred             EEEEeCcCeEEEEECCC-CceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC
Q 003579          489 MISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (809)
Q Consensus       489 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp  567 (809)
                      +.+|+.||.|..=|+.+ .+.....+...++..+..+....-+-+++.|+.|+-|..+-.               ..+++
T Consensus       270 vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~---------------~~l~~  334 (735)
T KOG0308|consen  270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD---------------IALSV  334 (735)
T ss_pred             EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc---------------ccccc
Confidence            99999999999999988 455555566688888888866665577788999988855421               14444


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          568 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       568 dg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                      .|++.. -+.|....+.+... .+-.++.+..++..-++-.|.+.++|-...|+ +.+||+
T Consensus       335 s~~~~~-~~T~~~~~~~~~~~-tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gn-v~lwDI  392 (735)
T KOG0308|consen  335 SGDLDF-FSTDSNNHSCDLTN-TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGN-VALWDI  392 (735)
T ss_pred             CCCCCc-ccccCCCccccccC-CCceeccCchhhhhhhhhcCcceEeeecCCCC-EEEEEe
Confidence            444444 22333344444321 23334444455666677777888888877774 888876

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=9.3e-25  Score=235.33  Aligned_cols=164  Identities=18%  Similarity=0.296  Sum_probs=139.0

Q ss_pred             EEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeCCe-------EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC
Q 003579          176 EFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (809)
Q Consensus       176 ~~~~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~~~-------~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg  247 (809)
                      .+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.       .+..+..| ...|.+++|+|++..+|++|+.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCC
Confidence            4779999999999999 88999999999999999997653       45556554 789999999998755999999999


Q ss_pred             cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC-CeeEEEecCC
Q 003579          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANG  326 (809)
Q Consensus       248 ~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~  326 (809)
                      .|+|||+++++.+..+. +|...|.+++|+|++.+|++++.|+.|++||+...    ..+....+|.+. +..+.|.+++
T Consensus       149 tVrIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~  223 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRK  223 (493)
T ss_pred             EEEEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCC
Confidence            99999999999888887 89999999999999999999999999999998765    455666788765 3567788887


Q ss_pred             CEEEEEE----CCCCEEEEEeee
Q 003579          327 RHILSAG----QDRAFRLFSVIQ  345 (809)
Q Consensus       327 ~~l~s~~----~dg~i~~wd~~~  345 (809)
                      ..+++++    .|+.|++||+++
T Consensus       224 ~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        224 DLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             CeEEEEecCCCCCCeEEEEeCCC
Confidence            7777665    367888888653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1e-25  Score=209.43  Aligned_cols=280  Identities=17%  Similarity=0.227  Sum_probs=214.0

Q ss_pred             CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC
Q 003579          179 GWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (809)
Q Consensus       179 ~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~  256 (809)
                      .....|.+++||| ...+++.|+.||+||+|++.. |..+.+....+.++|.+++|+.||. .+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC
Confidence            4468899999999 556777899999999999986 4555555556689999999999998 899999999999999999


Q ss_pred             ceeeeeeecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC
Q 003579          257 RRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ  334 (809)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~  334 (809)
                      ++.... . .|.++|..+.|.+...  .|+|||.|++|+.||.+...    .+..+ .-.+.+.++..  ....++.+..
T Consensus       104 ~Q~~~v-~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----pv~t~-~LPeRvYa~Dv--~~pm~vVata  174 (347)
T KOG0647|consen  104 GQVSQV-A-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----PVATL-QLPERVYAADV--LYPMAVVATA  174 (347)
T ss_pred             CCeeee-e-ecccceeEEEEecCCCcceeEecccccceeecccCCCC----eeeee-eccceeeehhc--cCceeEEEec
Confidence            965544 3 6999999999998776  89999999999999887553    22222 22233444433  3457888889


Q ss_pred             CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecc
Q 003579          335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  414 (809)
Q Consensus       335 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  414 (809)
                      ++.|.+|+++.+........                                                            
T Consensus       175 ~r~i~vynL~n~~te~k~~~------------------------------------------------------------  194 (347)
T KOG0647|consen  175 ERHIAVYNLENPPTEFKRIE------------------------------------------------------------  194 (347)
T ss_pred             CCcEEEEEcCCCcchhhhhc------------------------------------------------------------
Confidence            99999999976543221100                                                            


Q ss_pred             eeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccc---ccCccccEEEEEEcCCCCEEEE
Q 003579          415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS---NYAHNGEVVGVACDSTNTLMIS  491 (809)
Q Consensus       415 ~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s  491 (809)
                            ....-.++|+++-++....++|+-+|.+.+..+..+.....|.-...+.   ....-.+|++++|+|....|+|
T Consensus       195 ------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT  268 (347)
T KOG0647|consen  195 ------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT  268 (347)
T ss_pred             ------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence                  0112678899999998888999999999999998874433332111110   0011246899999999999999


Q ss_pred             EeCcCeEEEEECCCCceeeee-ecCCCeEEEEEeeCCCEEEEEe
Q 003579          492 AGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVA  534 (809)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~  534 (809)
                      +|.||+..+||-.....+... .+..+|++.+|+.+|.++|.+.
T Consensus       269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            999999999998877666664 4558999999999999988774

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=4.9e-26  Score=233.94  Aligned_cols=242  Identities=21%  Similarity=0.333  Sum_probs=205.0

Q ss_pred             eEEEEccccccEEEEEE-eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccE-EEEeCCCCCCEEEEEeCCCe
Q 003579           85 QVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPT-CIMHPDTYLNKVIVGSQEGS  162 (809)
Q Consensus        85 ~~~~~~~h~~~V~~l~~-~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~l~~~~~dg~  162 (809)
                      ..+.+.||+..|..+++ ++.+++++|.||++++|+-..++..  ....+..+.+++.. .++.+.. ...+++|+.|.+
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l--~~~~~~~~~g~i~~~i~y~e~~-~~~l~~g~~D~~   82 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYL--ETHAFEGPKGFIANSICYAESD-KGRLVVGGMDTT   82 (745)
T ss_pred             eEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccc--cceecccCcceeeccceecccc-CcceEeecccce
Confidence            34569999999999887 6778999999999999998766551  12334456666655 4444422 146999999999


Q ss_pred             EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEE
Q 003579          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (809)
Q Consensus       163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~las  242 (809)
                      +.+|...+..+++.+++|.+.|.|+....++. +++|+.|.++++|-.  ++....+..| +..|.++++-|++.  ++|
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH-~asVWAv~~l~e~~--~vT  156 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGH-TASVWAVASLPENT--YVT  156 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCc-chheeeeeecCCCc--EEe
Confidence            99999999999999999999999999888876 999999999999975  5566666655 89999999999884  889


Q ss_pred             EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEE
Q 003579          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (809)
Q Consensus       243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (809)
                      |+.|.+|++|.-  ++.+.++. +|.+.|+++++.+++ .+++++.||.|+.|+++.     ..+....||..-+.++..
T Consensus       157 gsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~  227 (745)
T KOG0301|consen  157 GSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISM  227 (745)
T ss_pred             ccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEe
Confidence            999999999984  88888998 899999999999886 578999999999998843     467778899999999998


Q ss_pred             ecCCCEEEEEECCCCEEEEEee
Q 003579          323 YANGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       323 ~~~~~~l~s~~~dg~i~~wd~~  344 (809)
                      ..++..++++++|+++++|+..
T Consensus       228 ~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  228 ALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             cCCCCeEEEecCCceEEEeecC
Confidence            8888899999999999999865

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.4e-24  Score=189.83  Aligned_cols=290  Identities=20%  Similarity=0.299  Sum_probs=228.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEee------CC--------eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YD--------EELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~------~~--------~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d  246 (809)
                      ...|.+++|+|.|.+.|+|+...+++|-...      .+        ..+..-..||++.|.|.+|+|+|+ ++++|+.|
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsnd  110 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSND  110 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCC
Confidence            6789999999999999999999998876432      11        123344467799999999999999 99999999


Q ss_pred             CcEEEEECCCceee-----eeeecccccceEEEEEecC----CCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579          247 GVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (809)
Q Consensus       247 g~I~iwdl~~~~~~-----~~~~~~h~~~V~~l~~~~~----~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (809)
                      .+|++.-.+...+.     ..+. -|.+.|..++|..+    +.+|++++. |..++|..+-+.+  +.+..+.||.+.|
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g--~~~~a~sghtghi  186 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDCGRG--QGFHALSGHTGHI  186 (350)
T ss_pred             ceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeecCCC--CcceeecCCcccE
Confidence            99999866544221     1233 68999999999864    446777653 5566665555544  4567788999988


Q ss_pred             eeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec
Q 003579          318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (809)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  397 (809)
                      .++ |+-+|-.+++|++|.+|++||++-......+....                                         
T Consensus       187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~-----------------------------------------  224 (350)
T KOG0641|consen  187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF-----------------------------------------  224 (350)
T ss_pred             EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc-----------------------------------------
Confidence            776 34478899999999999999998776655443210                                         


Q ss_pred             CCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccE
Q 003579          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (809)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (809)
                                          ....-..+.|.++++.|.|+.+++|..|....+||++.+..++.|.        .|...|
T Consensus       225 --------------------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~--------phsadi  276 (350)
T KOG0641|consen  225 --------------------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH--------PHSADI  276 (350)
T ss_pred             --------------------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC--------CCccce
Confidence                                0000112679999999999999999999999999999999999985        899999


Q ss_pred             EEEEEcCCCCEEEEEeCcCeEEEEECCCC-----ceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579          478 VGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (809)
Q Consensus       478 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~  545 (809)
                      .++.|+|...++++|+.|..|++-|+...     ..+..-++...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus       277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999999999999999998743     122233556788899999999999999999999999754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=6.8e-26  Score=224.68  Aligned_cols=300  Identities=11%  Similarity=0.174  Sum_probs=231.2

Q ss_pred             ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe----EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC
Q 003579          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg  247 (809)
                      ..-..+++|...|+++++.|.|-++++|+.|..|++||+....    ..+.+.......|.+++|++.|..+| +.+...
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iL-vvsg~a  236 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQIL-VVSGSA  236 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEE-EEecCc
Confidence            3445678899999999999999999999999999999997432    22233333345899999999998444 445567


Q ss_pred             cEEEEECCCceeeeeee-----------cccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEec--cCC
Q 003579          248 VISIWNLEKRRLQSVIR-----------EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR--SGH  313 (809)
Q Consensus       248 ~I~iwdl~~~~~~~~~~-----------~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~--~~h  313 (809)
                      ..+|+|-.........+           .+|...+++.+|+|..+ .++|++.||++|+|+++......++++..  .+.
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            89999976554444333           37999999999999765 89999999999999998776554444433  345


Q ss_pred             CCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579          314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (809)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  393 (809)
                      .-+++.++|++||+.|+.|..||+|.+|+.........+                                         
T Consensus       317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~-----------------------------------------  355 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM-----------------------------------------  355 (641)
T ss_pred             ccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-----------------------------------------
Confidence            568899999999999999999999999997432211110                                         


Q ss_pred             EeecCCceEEEEEeeeeeecceeeecCCCCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eeeeCcccccc
Q 003579          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENP--TAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSN  470 (809)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~  470 (809)
                                              .....|.  ..|+|+.||++|++|++-+.|+.+++||+...... .....      
T Consensus       356 ------------------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg------  405 (641)
T KOG0772|consen  356 ------------------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG------  405 (641)
T ss_pred             ------------------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC------
Confidence                                    0111232  48999999999999999999999999999765432 22211      


Q ss_pred             cCccccEEEEEEcCCCCEEEEEe------CcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579          471 YAHNGEVVGVACDSTNTLMISAG------YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD  543 (809)
Q Consensus       471 ~~h~~~v~~l~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d  543 (809)
                      .....+-+.++|+|+.+++++|.      ..|.+.+||..+-+.+..+... ..+..+.|||.=+.|.+|+.||.++||-
T Consensus       406 L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  406 LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            12234567899999999999986      3578999999999998888776 7899999999999999999999999874

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.2e-24  Score=235.11  Aligned_cols=250  Identities=15%  Similarity=0.203  Sum_probs=194.0

Q ss_pred             EeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeCCe--------EEEEEeccCCCcE
Q 003579          157 GSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE--------ELVTFTHSMRGAV  227 (809)
Q Consensus       157 ~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~~~--------~~~~~~~~~~~~V  227 (809)
                      |+..+.+.+|+......+..+.+|.+.|.+++|+|+ +++||+|+.||+|+|||+.++.        .+..+.. |...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence            556788999998888889999999999999999997 7899999999999999998643        2334444 47899


Q ss_pred             EEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE
Q 003579          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (809)
Q Consensus       228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~  307 (809)
                      .+++|+|++..+|++++.||.|++||+++++....+.  |...|.+++|+|+|.+|++++.|+.|++||+...    ..+
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i  202 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIA  202 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEE
Confidence            9999999998677899999999999999998776665  6678999999999999999999999999998765    456


Q ss_pred             EeccCCCCCCeeEE-----EecCCCEEEEEECCC----CEEEEEeeeccc-ceecchhhHHHHHhhccchhhhhccCcee
Q 003579          308 RFRSGHSAPPLCIR-----FYANGRHILSAGQDR----AFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVI  377 (809)
Q Consensus       308 ~~~~~h~~~v~~i~-----~~~~~~~l~s~~~dg----~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  377 (809)
                      ..+.+|.+.+....     |++++.+|++++.|+    .|++||++.... ...+.                        
T Consensus       203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------------------------  258 (568)
T PTZ00420        203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS------------------------  258 (568)
T ss_pred             EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE------------------------
Confidence            67788988764433     447888999988774    799999875321 11100                        


Q ss_pred             EEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003579          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (809)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~  457 (809)
                                                                ...+.+.+......++|.++++|..|+.|++|++..+.
T Consensus       259 ------------------------------------------ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        259 ------------------------------------------IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             ------------------------------------------ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence                                                      00111333334445678999999999999999998774


Q ss_pred             eeeeeeCcccccccCccccEEEEEEcCCC
Q 003579          458 SRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (809)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  486 (809)
                      ... +.      ...+..++.+++|.|..
T Consensus       297 ~~~-l~------~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        297 IRK-VN------EYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEe-ec------ccccCCCccceEEcccc
Confidence            322 21      13466788899999864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.9e-25  Score=219.29  Aligned_cols=274  Identities=18%  Similarity=0.279  Sum_probs=225.3

Q ss_pred             cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee-eeee----------------cccccceEEEEEecCCCEEE
Q 003579          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIR----------------EAHDNAIISLHFFANEPVLM  284 (809)
Q Consensus       222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~-~~~~----------------~~h~~~V~~l~~~~~~~~l~  284 (809)
                      .|.-++.+++++||++ +.++++.+|+|.-|+..+++.. ..+.                .+|...+.+++.++|+++|+
T Consensus       140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla  218 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA  218 (479)
T ss_pred             cccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence            3478899999999999 8899999999999999888633 1111                16888999999999999999


Q ss_pred             EEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhc
Q 003579          285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  364 (809)
Q Consensus       285 s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  364 (809)
                      +|+.|..|.||+.++.    ..+..+.+|.+.|.+++|......+++++.|+++++|++.......+             
T Consensus       219 tgg~d~~v~Iw~~~t~----ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet-------------  281 (479)
T KOG0299|consen  219 TGGRDRHVQIWDCDTL----EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET-------------  281 (479)
T ss_pred             ecCCCceEEEecCccc----chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH-------------
Confidence            9999999999998877    45666889999999999999888999999999999999754322211             


Q ss_pred             cchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeC
Q 003579          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  444 (809)
Q Consensus       365 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~  444 (809)
                                                                                                      
T Consensus       282 --------------------------------------------------------------------------------  281 (479)
T KOG0299|consen  282 --------------------------------------------------------------------------------  281 (479)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEe
Q 003579          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH  524 (809)
Q Consensus       445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s  524 (809)
                                               +++|...|.++.....++.+-+++.|+++++|++.....+--..+.+.+-|++|-
T Consensus       282 -------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I  336 (479)
T KOG0299|consen  282 -------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI  336 (479)
T ss_pred             -------------------------HhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe
Confidence                                     2489999999999888888888889999999999655444444445788999987


Q ss_pred             eCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-C-----------CCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCc---
Q 003579          525 RVNGLLATVADDLVIRLFDVVALRMVRKFEG-H-----------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA---  589 (809)
Q Consensus       525 ~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~-h-----------~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~---  589 (809)
                      . ...+++|++||.|.+|++.+.+++.+..- |           ...|++++..|...++++||.+|.||+|-+.+|   
T Consensus       337 n-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  337 N-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             c-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence            6 45688999999999999999888776541 2           227999999999999999999999999999988   


Q ss_pred             -cEEEEeeeCcceEEEEEcCCCCeEEEEEeC
Q 003579          590 -RQIDAIHVDVSITALSLSPNMDVLATAHVD  619 (809)
Q Consensus       590 -~~i~~~~~~~~v~~l~~spdg~~lat~~~d  619 (809)
                       +++..+....-|++++|+++|++|+++...
T Consensus       416 i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  416 INLLYSLSLVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             cceeeecccccEEEEEEEccCCCEEEEeccc
Confidence             455555556669999999999977766443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1.9e-26  Score=227.60  Aligned_cols=284  Identities=13%  Similarity=0.243  Sum_probs=242.9

Q ss_pred             ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEecc--CCCCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  343 (809)
                      +|..-|.++..+...+.++||+. |.|+|||+....... .+..+.  ...+.+.++...|||+.|++|+.-.++.+||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-ccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            68889999999999999999885 789999997663322 222211  23457889999999999999999999999999


Q ss_pred             eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (809)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (809)
                      ...........                                                                  ...
T Consensus       495 AapTprikael------------------------------------------------------------------tss  508 (705)
T KOG0639|consen  495 AAPTPRIKAEL------------------------------------------------------------------TSS  508 (705)
T ss_pred             cCCCcchhhhc------------------------------------------------------------------CCc
Confidence            76543221100                                                                  001


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  503 (809)
                      .....+++++||.+..+.+.+||.|.+||+.+...++.|.        +|...+.|+.++++|..|-+|+.|.+||.||+
T Consensus       509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhh
Confidence            1346678999999999999999999999999999999986        99999999999999999999999999999999


Q ss_pred             CCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEE
Q 003579          504 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (809)
Q Consensus       504 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~v  583 (809)
                      +++..+...+..+.|.++.++|.+.+||+|..++.+.|..... .....+.-|...|.++.|++.|+|+++.+.|..+..
T Consensus       581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna  659 (705)
T KOG0639|consen  581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  659 (705)
T ss_pred             hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence            9999999999999999999999999999999999999987654 345566779999999999999999999999999999


Q ss_pred             EEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       584 wd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                      |..+-|..+...+..++|.++.+|.|.+|++|++.|.. -.+|.
T Consensus       660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkk-ATVYe  702 (705)
T KOG0639|consen  660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKK-ATVYE  702 (705)
T ss_pred             ccCccccceeeccccCcceeeeeccCceEEEecCCCcc-eEEEE
Confidence            99999999998888889999999999999999999964 55554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.3e-25  Score=232.98  Aligned_cols=277  Identities=14%  Similarity=0.318  Sum_probs=228.9

Q ss_pred             cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       265 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  344 (809)
                      .+|..+.+.++|.|+|.+|++++.||.|++|+.......|+.+.   .+...|.+++..  +.+|++|+.+++|.+|.+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACY--SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence            48999999999999999999999999999997665533444432   267777777765  5599999999999999876


Q ss_pred             ecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCC
Q 003579          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (809)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (809)
                      .+..-..+.                                                                    ...
T Consensus        85 s~~~~~iL~--------------------------------------------------------------------Rft   96 (933)
T KOG1274|consen   85 SGEEDTILA--------------------------------------------------------------------RFT   96 (933)
T ss_pred             CCCccceee--------------------------------------------------------------------eee
Confidence            554322111                                                                    112


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      .+++.++++.+|++++.|+.|-.|++.++........+.        +|.++|.++.++|.+.+||+.+-||.|++||+.
T Consensus        97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr--------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR--------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec--------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            688999999999999999999999999999998888876        999999999999999999999999999999999


Q ss_pred             CCceeeeeec---------CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec--CCCCeeeEEECCCCCEEE
Q 003579          505 GRDLKSRWEV---------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL  573 (809)
Q Consensus       505 ~~~~~~~~~~---------~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~--h~~~I~~l~fspdg~~l~  573 (809)
                      ++.+..++..         ...+..++|+|+|..+|+.+.|+.|.+|+..+++....+..  |...+.+++|||.|+|||
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence            9987776642         25677899999999999999999999999999998888775  445599999999999999


Q ss_pred             EEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEe
Q 003579          574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW  626 (809)
Q Consensus       574 s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW  626 (809)
                      +++.||.|.|||+++   ...-.....|++++|.|++.-+-.....+ ...+|
T Consensus       249 As~~~g~I~vWnv~t---~~~~~~~~~Vc~~aw~p~~n~it~~~~~g-~~~~~  297 (933)
T KOG1274|consen  249 ASTLDGQILVWNVDT---HERHEFKRAVCCEAWKPNANAITLITALG-TLGVS  297 (933)
T ss_pred             eeccCCcEEEEeccc---chhccccceeEEEecCCCCCeeEEEeecc-ccccC
Confidence            999999999999998   22222334599999999998776666555 24444

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.7e-26  Score=211.70  Aligned_cols=296  Identities=14%  Similarity=0.249  Sum_probs=244.9

Q ss_pred             eeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (809)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd  209 (809)
                      ++.+..|...+..++.....  +.+.+++.|.+-+||.+++|+++.++.||.+.|.++.|++.+.++++++.|++.+||.
T Consensus       141 vre~~GHkDGiW~Vaa~~tq--pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQ--PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             hhhhcccccceeeehhhcCC--cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            55666777777666655555  6788999999999999999999999999999999999999999999999999999997


Q ss_pred             e------eC-----------------------------C-----eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579          210 V------RY-----------------------------D-----EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (809)
Q Consensus       210 ~------~~-----------------------------~-----~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I  249 (809)
                      .      ..                             +     .+++.+.+| .+.|.+..|...|+ .+++++.|.+-
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg~-Q~vTaSWDRTA  296 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-RAVVSACDWLAGGQ-QMVTASWDRTA  296 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-ccceEehhhhcCcc-eeeeeeccccc
Confidence            2      10                             0     134556554 88999999999888 89999999999


Q ss_pred             EEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (809)
Q Consensus       250 ~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (809)
                      .+||++++.++..+. +|....+.++-+|.++++++++.|.+.++|||...-   ..+..+.||...|+++.|..+. .+
T Consensus       297 nlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI---~sV~VFQGHtdtVTS~vF~~dd-~v  371 (481)
T KOG0300|consen  297 NLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI---QSVAVFQGHTDTVTSVVFNTDD-RV  371 (481)
T ss_pred             eeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhc---ceeeeecccccceeEEEEecCC-ce
Confidence            999999999999998 999999999999999999999999999999998442   4567788999999999999765 68


Q ss_pred             EEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeee
Q 003579          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (809)
Q Consensus       330 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (809)
                      ++|+.|.++++||+++......                          .+                              
T Consensus       372 VSgSDDrTvKvWdLrNMRsplA--------------------------TI------------------------------  395 (481)
T KOG0300|consen  372 VSGSDDRTVKVWDLRNMRSPLA--------------------------TI------------------------------  395 (481)
T ss_pred             eecCCCceEEEeeeccccCcce--------------------------ee------------------------------
Confidence            9999999999999976532110                          00                              


Q ss_pred             eeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC--C
Q 003579          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--T  487 (809)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~  487 (809)
                                  ...+++..++++..+..+++-..+..|++||+.........    ...-.+|...|+|.+|..+.  .
T Consensus       396 ------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP----rtsRqgHrRMV~c~AW~eehp~c  459 (481)
T KOG0300|consen  396 ------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP----RTSRQGHRRMVTCCAWLEEHPAC  459 (481)
T ss_pred             ------------ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC----cccccccceeeeeeeccccCccc
Confidence                        01267888999999999999999999999999866543322    11225899999999997543  4


Q ss_pred             EEEEEeCcCeEEEEECCCC
Q 003579          488 LMISAGYHGDIKVWDFKGR  506 (809)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~  506 (809)
                      -|++||.|..+.-|.+...
T Consensus       460 nLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  460 NLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccccccccceeeeeEeccc
Confidence            5889999999999998754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=6.2e-25  Score=222.54  Aligned_cols=168  Identities=16%  Similarity=0.240  Sum_probs=131.0

Q ss_pred             eEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeCCeEEE-----EEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579          173 KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELV-----TFTHSMRGAVTALAFSSDGQPLLASGASS  246 (809)
Q Consensus       173 ~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~-----~~~~~~~~~V~~l~fs~dg~~~lasg~~d  246 (809)
                      .+-.+.+|...|+.+.|+|- ..+||+++.|..|+||.+..|-...     ....+..-.|.++.|+|....+|+++. .
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~  149 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-H  149 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-C
Confidence            45567899999999999994 4589999999999999998443211     112333568999999998776788765 6


Q ss_pred             CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC-CeeEEEecC
Q 003579          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYAN  325 (809)
Q Consensus       247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~  325 (809)
                      |.++|||+.+++.+..+. +|...|.+..|+.||.+|++++.|+.|+|||-....   +.++...+|.+. =..+.|..+
T Consensus       150 g~v~i~D~stqk~~~el~-~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~---~piQ~te~H~~~rdsRv~w~Gn  225 (1012)
T KOG1445|consen  150 GSVYITDISTQKTAVELS-GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM---EPIQTTEGHGGMRDSRVLWAGN  225 (1012)
T ss_pred             ceEEEEEcccCceeeccc-CCchhhhccccccCCceEeeecCCcceEEeCCccCC---Cccccccccccchhheeeeccc
Confidence            899999999999999998 999999999999999999999999999999766543   455555777653 235667766


Q ss_pred             CCEEEEEECC----CCEEEEEeee
Q 003579          326 GRHILSAGQD----RAFRLFSVIQ  345 (809)
Q Consensus       326 ~~~l~s~~~d----g~i~~wd~~~  345 (809)
                      -..|++.+.+    +.+++||++.
T Consensus       226 ~~rlisTGF~~~R~reV~~~Dtr~  249 (1012)
T KOG1445|consen  226 WERLISTGFTTKRIREVRAYDTRK  249 (1012)
T ss_pred             hhhhhhcccchhhheeeeeeeccc
Confidence            6677776644    4677888654

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.3e-24  Score=232.24  Aligned_cols=233  Identities=12%  Similarity=0.180  Sum_probs=185.8

Q ss_pred             EEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCcc---ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCC
Q 003579           88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE---NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (809)
Q Consensus        88 ~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (809)
                      .+.||.+.|.++.|   ++++|++++.|++|++||+.+...   ...++..+..|...+..+.|+|++. +.|++|+.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCC
Confidence            37899999999997   467999999999999999987532   1224566777888888899999853 6899999999


Q ss_pred             eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (809)
Q Consensus       162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la  241 (809)
                      +|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+..+....+..+.|.+++..++.
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999998887764445667889998874444


Q ss_pred             EE---cCCCcEEEEECCCce-eeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEe-ccCCCC
Q 003579          242 SG---ASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRF-RSGHSA  315 (809)
Q Consensus       242 sg---~~dg~I~iwdl~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~-~~~h~~  315 (809)
                      +|   +.|+.|++||+++.. ........+...+....|++++.+|++++ .|+.|++|++....    +... ...+..
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~----~~~~~~~~s~~  304 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER----LTFCSSYSSVE  304 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc----eEEEeeccCCC
Confidence            44   247999999998764 33333322344566778899999999887 59999999997653    2222 234556


Q ss_pred             CCeeEEEecC
Q 003579          316 PPLCIRFYAN  325 (809)
Q Consensus       316 ~v~~i~~~~~  325 (809)
                      ++..++|.|.
T Consensus       305 ~~~g~~~~pk  314 (493)
T PTZ00421        305 PHKGLCMMPK  314 (493)
T ss_pred             CCcceEeccc
Confidence            7788888874

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.2e-24  Score=203.50  Aligned_cols=273  Identities=15%  Similarity=0.258  Sum_probs=220.9

Q ss_pred             EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEe
Q 003579          218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (809)
Q Consensus       218 ~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~  297 (809)
                      .+.......|+++.|+|.+. .|++++.||.+++||.....+...+.  |..++.+++|.+ ...+++|+.||.|+.+|+
T Consensus         7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL   82 (323)
T ss_pred             ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence            34445567899999998888 66667799999999999987777775  999999999987 457899999999999999


Q ss_pred             eCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCcee
Q 003579          298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (809)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  377 (809)
                      ++...     ..+..|..++.|+.+++....+++||.|++|++||.+.......+.+                       
T Consensus        83 n~~~~-----~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-----------------------  134 (323)
T KOG1036|consen   83 NTGNE-----DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-----------------------  134 (323)
T ss_pred             cCCcc-----eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----------------------
Confidence            88742     33458999999999999778999999999999999876333222211                       


Q ss_pred             EEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003579          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (809)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~  457 (809)
                                                                    ...|.+  .+-.|+.|++|+.+..+.+||+++..
T Consensus       135 ----------------------------------------------~kkVy~--~~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  135 ----------------------------------------------GKKVYC--MDVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             ----------------------------------------------CceEEE--EeccCCEEEEeecCceEEEEEccccc
Confidence                                                          123333  44458999999999999999998876


Q ss_pred             eeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC----ceeeeeecC----------CCeEEEEE
Q 003579          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG----------CSLVKIVY  523 (809)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~----------~~i~~~~~  523 (809)
                      ...+..      ...-+-.++++++-|++.-.+.++-||.|.+=.++..    +....++.|          .+|++++|
T Consensus       167 ~~~q~r------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  167 EPFQRR------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             chhhhc------cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence            544221      1245678999999998888999999999988777655    222233322          68999999


Q ss_pred             eeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe
Q 003579          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       524 s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s  576 (809)
                      ||-.+.+|+|+.||.|.+||+.+.+.+.+|..-...|.+++|+.||..||.|+
T Consensus       241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            99999999999999999999999999999988888899999999999999887

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=8.6e-25  Score=224.85  Aligned_cols=284  Identities=19%  Similarity=0.313  Sum_probs=232.4

Q ss_pred             CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE-EeccCCCcEEE-EEEecCCCCEEEEEcCCCc
Q 003579          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTA-LAFSSDGQPLLASGASSGV  248 (809)
Q Consensus       171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~V~~-l~fs~dg~~~lasg~~dg~  248 (809)
                      -++-+.+.+|...|..++..+.. .+++++.||++++|+-+.++.+.. .-..+.+.|.+ +++-+..+..+++|+.|+.
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            46678899999999999887664 789999999999999876665542 22223566665 7887633336999999999


Q ss_pred             EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (809)
Q Consensus       249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (809)
                      |.+|.+.+......+. +|.+.|.++....++. +++||.|.++++|...      ++.....+|...|.++...|++ .
T Consensus        83 i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~------~l~~~l~gH~asVWAv~~l~e~-~  153 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG------ELVYSLQGHTASVWAVASLPEN-T  153 (745)
T ss_pred             EEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecch------hhhcccCCcchheeeeeecCCC-c
Confidence            9999999999999999 9999999999887776 9999999999999554      3455578999999999999988 8


Q ss_pred             EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (809)
Q Consensus       329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (809)
                      ++||+.|.+|++|.-.                                                                
T Consensus       154 ~vTgsaDKtIklWk~~----------------------------------------------------------------  169 (745)
T KOG0301|consen  154 YVTGSADKTIKLWKGG----------------------------------------------------------------  169 (745)
T ss_pred             EEeccCcceeeeccCC----------------------------------------------------------------
Confidence            8999999999999631                                                                


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (809)
                                                                      .....+        .+|...|+++++-+++ .
T Consensus       170 ------------------------------------------------~~l~tf--------~gHtD~VRgL~vl~~~-~  192 (745)
T KOG0301|consen  170 ------------------------------------------------TLLKTF--------SGHTDCVRGLAVLDDS-H  192 (745)
T ss_pred             ------------------------------------------------chhhhh--------ccchhheeeeEEecCC-C
Confidence                                                            111122        3899999999998875 4


Q ss_pred             EEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579          489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (809)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd  568 (809)
                      +++|+.||.|++|++....++....+..-+.++....+++.++++++|+++++|+..  ++++.+.-..-.|.++.+-++
T Consensus       193 flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N  270 (745)
T KOG0301|consen  193 FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN  270 (745)
T ss_pred             eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC
Confidence            889999999999999544444444555889999988889999999999999999987  777777755668999999988


Q ss_pred             CCEEEEEeCCCeEEEEEcCC
Q 003579          569 GKWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       569 g~~l~s~s~D~~I~vwd~~~  588 (809)
                      |. |++|+.||.||||....
T Consensus       271 gD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  271 GD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CC-EEEeccCceEEEEEecc
Confidence            87 67788899999998763

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-23  Score=186.99  Aligned_cols=290  Identities=16%  Similarity=0.247  Sum_probs=228.4

Q ss_pred             cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC----------CCCceeE-EeccCCCCCCeeEEEecCCCEEEEEECC
Q 003579          267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTT----------DGDPRLL-RFRSGHSAPPLCIRFYANGRHILSAGQD  335 (809)
Q Consensus       267 h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~----------~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~d  335 (809)
                      ....|.+++|.|.|.+.+.|+..+++++..+..-          ...+..+ +..+.|.+.|.|.+|+|+|+.|++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            5678999999999999999999999998855321          1112222 3345688999999999999999999999


Q ss_pred             CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecce
Q 003579          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (809)
Q Consensus       336 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (809)
                      .+|++..+..+.+...=                                                              +
T Consensus       111 k~ik~l~fn~dt~~~~g--------------------------------------------------------------~  128 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATG--------------------------------------------------------------H  128 (350)
T ss_pred             ceEEEEecccccccccC--------------------------------------------------------------c
Confidence            99999876554332110                                                              0


Q ss_pred             eeecCCCCCCCeEEEEEcCC----CCEEEEEe-CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEE
Q 003579          416 ILRPCPENPTAVKACTISAC----GNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (809)
Q Consensus       416 ~~~~~~~~~~~v~~v~~s~~----g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  490 (809)
                      .+. ..-|.+.|..++|-.+    |..+++++ .|-.|++-|.+.|+....+.        +|.+.|.++- +-+|-+++
T Consensus       129 dle-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------ghtghilaly-swn~~m~~  198 (350)
T KOG0641|consen  129 DLE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS--------GHTGHILALY-SWNGAMFA  198 (350)
T ss_pred             cee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec--------CCcccEEEEE-EecCcEEE
Confidence            000 0124477888888543    44555544 35678888899998888775        9999998874 44688999


Q ss_pred             EEeCcCeEEEEECCCCceeeeeecC--------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee
Q 003579          491 SAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (809)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~  562 (809)
                      +|+.|.+|++||++-..++.++...        +.+.+++..|.|++|++|..|....+||++.++.++.|..|+..|.+
T Consensus       199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~  278 (350)
T KOG0641|consen  199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRC  278 (350)
T ss_pred             ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeE
Confidence            9999999999999988888777432        67899999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCc--c--EEEEe-eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          563 FCFSEDGKWLLSSGMDGSLRIWDVILA--R--QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       563 l~fspdg~~l~s~s~D~~I~vwd~~~~--~--~i~~~-~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      +.|||...||++++.|..|++-|++..  +  .+-.. .+...+..+.|+|..--+++.+.|. ++.+|...
T Consensus       279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk-t~tlwa~~  349 (350)
T KOG0641|consen  279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK-TATLWALN  349 (350)
T ss_pred             EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc-eEEEeccC
Confidence            999999999999999999999998732  1  12222 3444588899999988888999998 79999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.6e-23  Score=218.55  Aligned_cols=284  Identities=13%  Similarity=0.155  Sum_probs=218.1

Q ss_pred             EEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE-EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (809)
Q Consensus       239 ~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (809)
                      ++++++.|+.|.+||+.+++.+..+. .+ ..+.+++|+|++..+ ++++.++.|++|+....    +....+..+.. +
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~-~   75 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGPD-P   75 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCCC-c
Confidence            78899999999999999998888876 44 346789999999876 56778899999987654    33343433433 5


Q ss_pred             eeEEEecCCCEEEEE-ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579          318 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (809)
Q Consensus       318 ~~i~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (809)
                      ..++|+|+++.++++ +.|+.+++||+.+......+.                                           
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-------------------------------------------  112 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-------------------------------------------  112 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------------------
Confidence            678999999877654 568999999986543222110                                           


Q ss_pred             cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeeeeeCcccccccCccc
Q 003579          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNG  475 (809)
Q Consensus       397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~  475 (809)
                                                ....+.+++++|+|++++++..++ .+..|+..++.......         ...
T Consensus       113 --------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~  157 (300)
T TIGR03866       113 --------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQ  157 (300)
T ss_pred             --------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCC
Confidence                                      013356789999999999998875 46778988876655432         223


Q ss_pred             cEEEEEEcCCCCEEEEE-eCcCeEEEEECCCCceeeeeecC--------CCeEEEEEeeCCCEEEEE-eCCCeEEEEEcC
Q 003579          476 EVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV  545 (809)
Q Consensus       476 ~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~-~~d~~I~v~d~~  545 (809)
                      ...+++|+|++++++.+ ..++.|++||+.+++.+..+...        .....++|+|++++++++ ..++.+.+||++
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            45779999999988554 46999999999999887766432        123568899999986554 456789999999


Q ss_pred             CCeEEEEEecCCCCeeeEEECCCCCEEEEE-eCCCeEEEEEcCCccEEEEeeeCcceEEEEEcC
Q 003579          546 ALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (809)
Q Consensus       546 ~~~~~~~~~~h~~~I~~l~fspdg~~l~s~-s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~sp  608 (809)
                      +++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++++..+.....+++++++|
T Consensus       238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            998877664 44579999999999999876 468999999999999999999888889999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3.1e-24  Score=200.64  Aligned_cols=276  Identities=16%  Similarity=0.243  Sum_probs=216.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~  260 (809)
                      ...|+++.|+|.++.|++++.||++++|++........+..  ..++.+++|.++.+  +++|+.||.|+.+|+.++...
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~d~~~--~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFADEST--IVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CCceeeeeccCCce--EEEeccCceEEEEEecCCcce
Confidence            67899999999999999999999999999998877666665  68999999998764  889999999999999998776


Q ss_pred             eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (809)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~  340 (809)
                      ..-  .|..+|.++.+++....+++||.|++|++||.....    ..... .....|.++..  .|..|++|+.|+.+.+
T Consensus        89 ~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~----~~~~~-d~~kkVy~~~v--~g~~LvVg~~~r~v~i  159 (323)
T KOG1036|consen   89 QIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV----VVGTF-DQGKKVYCMDV--SGNRLVVGTSDRKVLI  159 (323)
T ss_pred             eec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccc----ccccc-ccCceEEEEec--cCCEEEEeecCceEEE
Confidence            554  599999999999988899999999999999876431    22111 22235666665  4678999999999999


Q ss_pred             EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (809)
Q Consensus       341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  420 (809)
                      ||+++.........                                                                  
T Consensus       160 yDLRn~~~~~q~re------------------------------------------------------------------  173 (323)
T KOG1036|consen  160 YDLRNLDEPFQRRE------------------------------------------------------------------  173 (323)
T ss_pred             EEcccccchhhhcc------------------------------------------------------------------
Confidence            99987654331110                                                                  


Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeeeeeCcccc-cccCccccEEEEEEcCCCCEEEEEeCc
Q 003579          421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG----ISRGSYLDMSER-SNYAHNGEVVGVACDSTNTLMISAGYH  495 (809)
Q Consensus       421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~----~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~d  495 (809)
                      ...+..++++++-|.+.-.++++-+|.|.+=.+...    .....|.-.... ....--.+|++++|+|-.+.++|||.|
T Consensus       174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD  253 (323)
T KOG1036|consen  174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD  253 (323)
T ss_pred             ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence            012267899999999999999999999887655544    222223211000 001123479999999999999999999


Q ss_pred             CeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeC
Q 003579          496 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD  535 (809)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~  535 (809)
                      |.|.+||..+.+.+..+..- ..|.+++|+.+|..||+++.
T Consensus       254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            99999999999888887655 77999999999999999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=4.7e-25  Score=217.77  Aligned_cols=281  Identities=16%  Similarity=0.252  Sum_probs=237.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC---eEEEEEecc-CCCcEEEEEEecCCCCEEEEEcCCCcEEEEEC
Q 003579          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD---EELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (809)
Q Consensus       179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~---~~~~~~~~~-~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl  254 (809)
                      .|..-|.++..|...+.+.+|+. |.|+|||+...   ..+..+..- ....|.++...|||+ .|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeec
Confidence            46788888999999999999986 88999999743   234444432 246899999999999 7888999999999999


Q ss_pred             CCceeee--eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579          255 EKRRLQS--VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (809)
Q Consensus       255 ~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (809)
                      ......-  .+. ...-...+++.+||.++.+++..||.|.|||+...    .+++.+.||...+.||..++||..|-+|
T Consensus       495 AapTprikaelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  495 AAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTG  569 (705)
T ss_pred             cCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecC
Confidence            8764432  222 23345788999999999999999999999999876    6889999999999999999999999999


Q ss_pred             ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (809)
Q Consensus       333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  412 (809)
                      +-|.++|.||++.+.+..+..                                                           
T Consensus       570 GlDntvRcWDlregrqlqqhd-----------------------------------------------------------  590 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQHD-----------------------------------------------------------  590 (705)
T ss_pred             CCccceeehhhhhhhhhhhhh-----------------------------------------------------------
Confidence            999999999998776544321                                                           


Q ss_pred             cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE
Q 003579          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA  492 (809)
Q Consensus       413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  492 (809)
                                ..+.|.++..+|.+.++++|-.++.+.+.......... +        ..|...|.++.|.+.|+++++.
T Consensus       591 ----------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq-l--------hlheScVLSlKFa~cGkwfvSt  651 (705)
T KOG0639|consen  591 ----------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ-L--------HLHESCVLSLKFAYCGKWFVST  651 (705)
T ss_pred             ----------hhhhheecccCCCccceeeecccCcEEEEecCCcccee-e--------cccccEEEEEEecccCceeeec
Confidence                      12678889999999999999999999998876554433 2        3799999999999999999999


Q ss_pred             eCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEc
Q 003579          493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (809)
Q Consensus       493 ~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~  544 (809)
                      +.|..+..|...-|..+......++|.++.++.|++++++|+.|....||.+
T Consensus       652 GkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  652 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             CchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999999988888888899999999999999999999988888864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.1e-24  Score=199.84  Aligned_cols=208  Identities=14%  Similarity=0.237  Sum_probs=159.9

Q ss_pred             EEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579           88 TWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL  165 (809)
Q Consensus        88 ~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l  165 (809)
                      .++||.+.|++++|  +|++|++++.|++|++|++...+...-..............+.|+|+-. ..++..-...++++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~-s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK-SVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc-eEEEEEccCCEEEE
Confidence            38899999999999  7999999999999999999875432111111122223445678999983 33444445568999


Q ss_pred             EeCCC---CceEEE---------EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEe
Q 003579          166 WNIST---KKKLYE---------FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS  233 (809)
Q Consensus       166 wd~~~---~~~~~~---------~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs  233 (809)
                      |....   |...+.         -+.|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+... ...-+..+.|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~aavS  237 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDAAVS  237 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccceeeC
Confidence            97632   322211         13466778888888889999999999999999999 9999888765 5567888999


Q ss_pred             cCCCCEEEEEcCCCcEEEEECC---Cc-----eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579          234 SDGQPLLASGASSGVISIWNLE---KR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       234 ~dg~~~lasg~~dg~I~iwdl~---~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~  300 (809)
                      |+|+ ++|+++-.-.|++|.+-   .|     ..+..+. +|.+.|..++|+++...+++.+.||++++||.+..
T Consensus       238 P~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  238 PDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             CCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            9999 88888888899999863   22     3345566 99999999999999999999999999999988754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=4.6e-23  Score=215.12  Aligned_cols=294  Identities=11%  Similarity=0.125  Sum_probs=220.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l  230 (809)
                      +.+++++.|+.|.+||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+..+  ..+..+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~   78 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--PDPELF   78 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--CCccEE
Confidence            457888999999999999999999988754 46789999999876 56677899999999999887776653  335788


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCC-cEEEEEeeCCCCCceeEEe
Q 003579          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRF  309 (809)
Q Consensus       231 ~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~-~i~vw~~~~~~~~~~~~~~  309 (809)
                      +|+|+++.++++++.++.|++||+.+++.+..+.  +...+.+++|+|++.++++++.++ .+.+|+....    .....
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----~~~~~  152 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----EIVDN  152 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC----eEEEE
Confidence            9999998444555678999999999988777765  334578899999999999888765 4566665443    22222


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEE-ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccc
Q 003579          310 RSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (809)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  388 (809)
                      .. ....+.++.|++++++++.+ ..++.+.+||+.+.+....+...                                 
T Consensus       153 ~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~---------------------------------  198 (300)
T TIGR03866       153 VL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE---------------------------------  198 (300)
T ss_pred             EE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec---------------------------------
Confidence            21 23346789999999988655 46899999998766443322100                                 


Q ss_pred             cceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeCccc
Q 003579          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSE  467 (809)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~~  467 (809)
                                          .        ............++++|+|++++++ ..++.+.+||+.+++.....     
T Consensus       199 --------------------~--------~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-----  245 (300)
T TIGR03866       199 --------------------I--------PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-----  245 (300)
T ss_pred             --------------------c--------cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----
Confidence                                0        0000001234468899999987664 45678999999988776544     


Q ss_pred             ccccCccccEEEEEEcCCCCEEEEE-eCcCeEEEEECCCCceeeeeecCCCeEEEEEee
Q 003579          468 RSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  525 (809)
Q Consensus       468 ~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~  525 (809)
                          .+...+.+++|+|++++|+++ +.+|.|++||+.+++.+..++.+...+.++++|
T Consensus       246 ----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       246 ----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             ----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence                234578899999999999876 468999999999999999999888888888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=2.2e-23  Score=225.22  Aligned_cols=227  Identities=15%  Similarity=0.173  Sum_probs=180.1

Q ss_pred             EeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCCc--------eEEEEcC
Q 003579          109 IDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD-TYLNKVIVGSQEGSLQLWNISTKK--------KLYEFKG  179 (809)
Q Consensus       109 ~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~l~~~~~dg~i~lwd~~~~~--------~~~~~~~  179 (809)
                      |+.++.|++|+......    +..+..|...+..+.|+|. +  +.|++|+.||+|++||+.++.        ++..+.+
T Consensus        50 GG~~gvI~L~~~~r~~~----v~~L~gH~~~V~~lafsP~~~--~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g  123 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPP----VIKLKGHTSSILDLQFNPCFS--EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG  123 (568)
T ss_pred             CCceeEEEeeecCCCce----EEEEcCCCCCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence            55678899999876543    6777888888889999997 5  789999999999999997642        3456889


Q ss_pred             CCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579          180 WGSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (809)
Q Consensus       180 ~~~~I~~l~~sp~~~~-la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~  258 (809)
                      |...|.+++|+|++.. |++++.|++|+|||+++++.+..+..  ...|.+++|+++|. +|++++.|+.|+|||+++++
T Consensus       124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCc
Confidence            9999999999999875 57899999999999999988877753  46899999999999 88999999999999999999


Q ss_pred             eeeeeecccccceEEE-----EEecCCCEEEEEcCCC----cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579          259 LQSVIREAHDNAIISL-----HFFANEPVLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (809)
Q Consensus       259 ~~~~~~~~h~~~V~~l-----~~~~~~~~l~s~s~d~----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (809)
                      .+..+. +|.+.+...     .|++++.+|++++.|+    +|++||++.... +........+.+.+......++|.++
T Consensus       201 ~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        201 IASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDESTGLIY  278 (568)
T ss_pred             EEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCCCCEE
Confidence            988887 898765433     3457888999988774    799999875432 12222333333433334344568899


Q ss_pred             EEEECCCCEEEEEeeec
Q 003579          330 LSAGQDRAFRLFSVIQD  346 (809)
Q Consensus       330 ~s~~~dg~i~~wd~~~~  346 (809)
                      ++|+.|+.|++|++..+
T Consensus       279 lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEECCCeEEEEEccCC
Confidence            99999999999998654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=6.8e-24  Score=214.31  Aligned_cols=317  Identities=15%  Similarity=0.241  Sum_probs=242.0

Q ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC-EEEEEcCCCcEEEE
Q 003579          174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP-LLASGASSGVISIW  252 (809)
Q Consensus       174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~-~lasg~~dg~I~iw  252 (809)
                      -..+.+|.+.|.++...|.|.+||+|+.||+|+||.+.+|.++.++...  +.|.|++|+|.+.. +||++- ...+.|-
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~-~~~~~iv  469 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAV-GECVLIV  469 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence            3457899999999999999999999999999999999999999999874  78999999998764 444444 4447676


Q ss_pred             ECCCceeeeeeecccccceEEEEEecCCCEEEEE----cCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (809)
Q Consensus       253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~----s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (809)
                      +..-|..+..-.              ....|+++    ..|+.+..|.-...+....-+...-.|..+|..+.|+..|.|
T Consensus       470 np~~G~~~e~~~--------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY  535 (733)
T KOG0650|consen  470 NPIFGDRLEVGP--------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY  535 (733)
T ss_pred             Cccccchhhhcc--------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence            655442211110              11122222    235678888654332222224445578999999999999999


Q ss_pred             EEEEECC---CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579          329 ILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (809)
Q Consensus       329 l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (809)
                      |++...+   ..+.+.++......                                                        
T Consensus       536 latV~~~~~~~~VliHQLSK~~sQ--------------------------------------------------------  559 (733)
T KOG0650|consen  536 LATVMPDSGNKSVLIHQLSKRKSQ--------------------------------------------------------  559 (733)
T ss_pred             EEEeccCCCcceEEEEeccccccc--------------------------------------------------------
Confidence            9987654   35666665433221                                                        


Q ss_pred             EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (809)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (809)
                                  .+.....+.+.++.|+|...++++++.. .|++||+..+.....+.        .....|..++++|.
T Consensus       560 ------------~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~--------tg~kwiS~msihp~  618 (733)
T KOG0650|consen  560 ------------SPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL--------TGSKWISSMSIHPN  618 (733)
T ss_pred             ------------CchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh--------cCCeeeeeeeecCC
Confidence                        1111234789999999999999998764 69999999988877665        55678999999999


Q ss_pred             CCEEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcC------CC---eEEEEEe
Q 003579          486 NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVV------AL---RMVRKFE  554 (809)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~------~~---~~~~~~~  554 (809)
                      |..|+.++.|+.+..+|+.-+ ++.+++.++ ..+++++||+.-.++|+|++||++.|+.-.      ..   -++..+.
T Consensus       619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~  698 (733)
T KOG0650|consen  619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR  698 (733)
T ss_pred             CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence            999999999999999999744 566666665 789999999999999999999999998422      11   3477888


Q ss_pred             cCCCC----eeeEEECCCCCEEEEEeCCCeEEEE
Q 003579          555 GHTDR----ITDFCFSEDGKWLLSSGMDGSLRIW  584 (809)
Q Consensus       555 ~h~~~----I~~l~fspdg~~l~s~s~D~~I~vw  584 (809)
                      ||...    |.+..|+|...||++++.||+||+|
T Consensus       699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99766    9999999999999999999999998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.9e-24  Score=193.75  Aligned_cols=237  Identities=19%  Similarity=0.258  Sum_probs=191.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC---ceEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEEeeCCeE--EEEEecc
Q 003579          150 YLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHS  222 (809)
Q Consensus       150 ~~~~l~~~~~dg~i~lwd~~~~---~~~~~~~~~~~~I~~l~~sp--~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~  222 (809)
                      |.++|++++.|++|+|+.+++.   +++.++.+|.++|..++|..  .|.+||+++.||.|.||.-..++-  ...... 
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-  100 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA-  100 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-
Confidence            4489999999999999998754   57889999999999999986  799999999999999999887742  333333 


Q ss_pred             CCCcEEEEEEecCCC-CEEEEEcCCCcEEEEECCCc--eeeeeeecccccceEEEEEecC---C-----------CEEEE
Q 003579          223 MRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFAN---E-----------PVLMS  285 (809)
Q Consensus       223 ~~~~V~~l~fs~dg~-~~lasg~~dg~I~iwdl~~~--~~~~~~~~~h~~~V~~l~~~~~---~-----------~~l~s  285 (809)
                      |...|++++|.|.+- .+|++++.||.|.|.+.++.  -....+..+|.-.|++++|.|.   |           +.|++
T Consensus       101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS  180 (299)
T KOG1332|consen  101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS  180 (299)
T ss_pred             hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence            478999999999742 37899999999999987754  3444455589999999999986   4           46999


Q ss_pred             EcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC----CCEEEEEECCCCEEEEEeeecccceecchhhHHHHH
Q 003579          286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  361 (809)
Q Consensus       286 ~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  361 (809)
                      |+.|+.|+||+++..  ...+.+.+.+|.+.|..++|.|.    ..+|++|++||++.+|.........+          
T Consensus       181 gGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk----------  248 (299)
T KOG1332|consen  181 GGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK----------  248 (299)
T ss_pred             cCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc----------
Confidence            999999999988765  45566678999999999999993    35899999999999998653221111          


Q ss_pred             hhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEE
Q 003579          362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (809)
Q Consensus       362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~  441 (809)
                                                                             .......+..+..+.||.+|++|++
T Consensus       249 -------------------------------------------------------~tll~~f~~~~w~vSWS~sGn~LaV  273 (299)
T KOG1332|consen  249 -------------------------------------------------------KTLLEEFPDVVWRVSWSLSGNILAV  273 (299)
T ss_pred             -------------------------------------------------------ccccccCCcceEEEEEeccccEEEE
Confidence                                                                   0011123478999999999999999


Q ss_pred             EeCCCcEEEEECC
Q 003579          442 GTAGGWIERFNLQ  454 (809)
Q Consensus       442 g~~~g~i~i~~~~  454 (809)
                      ++.|+.|.+|.-.
T Consensus       274 s~GdNkvtlwke~  286 (299)
T KOG1332|consen  274 SGGDNKVTLWKEN  286 (299)
T ss_pred             ecCCcEEEEEEeC
Confidence            9999999999743

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.3e-22  Score=210.27  Aligned_cols=492  Identities=17%  Similarity=0.239  Sum_probs=315.7

Q ss_pred             EEeCC--eEEEEECCeEEEEECC--eeEEEEccccccEEEEEEe-----CCEEEEEeCCCcEEEEEcCCCccccceeeeE
Q 003579           63 ASYRD--YTFAAYGNHIAVVKRA--HQVATWSRHSAKVNLLLLF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHV  133 (809)
Q Consensus        63 a~~~~--~~~~a~g~~i~vw~~~--~~~~~~~~h~~~V~~l~~~-----g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~  133 (809)
                      .||+|  ..|+.+++.|.||...  ..+..+.+|..+++.+.++     -.++++++.||.|++||...+++    ++++
T Consensus        23 vfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L----lkt~   98 (792)
T KOG1963|consen   23 VFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL----LKTF   98 (792)
T ss_pred             ccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE----EEEE
Confidence            47788  4556779999999764  4455699999999999873     26788999999999999999888    4444


Q ss_pred             EcCCccccEEEEeC---CCCCCEEE-EEeCCCe-EEEEeCCCCceE-------------EEEcCCCCCEEEEEEcCCCCE
Q 003579          134 KLDDKFTPTCIMHP---DTYLNKVI-VGSQEGS-LQLWNISTKKKL-------------YEFKGWGSSISSCVSSPALDV  195 (809)
Q Consensus       134 ~~~~~~~~~~~~~p---~~~~~~l~-~~~~dg~-i~lwd~~~~~~~-------------~~~~~~~~~I~~l~~sp~~~~  195 (809)
                      ..+..... ..+.|   +.  ...+ .+..+.. +.....+..+..             ..+..|.. -.++.+++.|.+
T Consensus        99 ~~~~~v~~-~~~~~~~a~~--s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~  174 (792)
T KOG1963|consen   99 DNNLPVHA-LVYKPAQADI--SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEF  174 (792)
T ss_pred             ecCCceeE-EEechhHhCc--cceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceE
Confidence            43322111 11101   11  0111 1111111 111111111111             11122222 467788888877


Q ss_pred             EEEEeCCCeEEEEEeeCCeEE---EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC---ceeeeeeeccccc
Q 003579          196 VAVGCSDGKIHVHNVRYDEEL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDN  269 (809)
Q Consensus       196 la~g~~dg~i~iwd~~~~~~~---~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~---~~~~~~~~~~h~~  269 (809)
                      .+.... ..+.+|+..++...   +....+|...+++.+++|.++ ++|+|..||.|.+|.--.   .....++..=|..
T Consensus       175 ~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~  252 (792)
T KOG1963|consen  175 KGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD  252 (792)
T ss_pred             EEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence            766654 56889998875511   112234566789999999999 999999999999996332   2333333336888


Q ss_pred             ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (809)
Q Consensus       270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  349 (809)
                      .|.++.|+++|.+|++||..+.+.+|.+.++.  .+.+   ..-.++|..+.++||+...+....|..|.+....+....
T Consensus       253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL---PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k  327 (792)
T KOG1963|consen  253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL---PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK  327 (792)
T ss_pred             ccceeEEecCCceEeecccceEEEEEeecCCC--cccc---cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh
Confidence            99999999999999999999999999887764  2333   345689999999999999999999999999877554443


Q ss_pred             eecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEE
Q 003579          350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  429 (809)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~  429 (809)
                      ..++.-....                                                         -.......+-.+.
T Consensus       328 ~tIsgi~~~~---------------------------------------------------------~~~k~~~~~l~t~  350 (792)
T KOG1963|consen  328 STISGIKPPT---------------------------------------------------------PSTKTRPQSLTTG  350 (792)
T ss_pred             hhccCccCCC---------------------------------------------------------cccccccccccee
Confidence            3332210000                                                         0000112356778


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccc---ccCccccEEEEEEcCCCCEEEEEe--------Cc--C
Q 003579          430 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS---NYAHNGEVVGVACDSTNTLMISAG--------YH--G  496 (809)
Q Consensus       430 v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s~~--------~d--g  496 (809)
                      ++++|.-+.++..+..|.|.+||+.+......+.......   ...+.-.++.++.+-.|.+++|.-        .|  -
T Consensus       351 ~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~  430 (792)
T KOG1963|consen  351 VSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEV  430 (792)
T ss_pred             EEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceE
Confidence            8999988889999999999999999887776554222111   113445678888888899998864        23  3


Q ss_pred             eEEEEECCCCce----eeeee--cCCCeEEEE-EeeCCC-EEEEEeCCCeEEEEEcCCC----------eEEEEEecCCC
Q 003579          497 DIKVWDFKGRDL----KSRWE--VGCSLVKIV-YHRVNG-LLATVADDLVIRLFDVVAL----------RMVRKFEGHTD  558 (809)
Q Consensus       497 ~i~iwd~~~~~~----~~~~~--~~~~i~~~~-~s~~~~-~la~~~~d~~I~v~d~~~~----------~~~~~~~~h~~  558 (809)
                      .+++|-......    ...+.  ++..+...+ .++... ..++++.||.+++|-+...          .+...-.-|..
T Consensus       431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~  510 (792)
T KOG1963|consen  431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKT  510 (792)
T ss_pred             EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccC
Confidence            588998765433    23332  223333333 333333 8899999999999987322          22222223889


Q ss_pred             CeeeEEECCCCCEEEEEeCCCeEEEEEcCC-ccEEEEeeeCc-ceEEEEEcC----CCCeEEEEEeCCCeEEEeecCc
Q 003579          559 RITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDV-SITALSLSP----NMDVLATAHVDQNGVYLWVNRC  630 (809)
Q Consensus       559 ~I~~l~fspdg~~l~s~s~D~~I~vwd~~~-~~~i~~~~~~~-~v~~l~~sp----dg~~lat~~~d~~~i~lW~~~~  630 (809)
                      ++++++||.||..| +++.|++|.+||..+ ..+........ ++..+.+..    ++. +..++ .. .+.+|++..
T Consensus       511 ~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~l~~WNll~  584 (792)
T KOG1963|consen  511 PITALCFSQDGSLL-AVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA-LVHAT-QQ-RLSVWNLLS  584 (792)
T ss_pred             cccchhhcCCCcEE-EEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc-eeecc-Cc-eEehHhhhh
Confidence            99999999999655 566789999999988 44333332211 233333322    332 22222 22 588998753

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-20  Score=200.30  Aligned_cols=245  Identities=16%  Similarity=0.260  Sum_probs=198.3

Q ss_pred             ccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEe
Q 003579           90 SRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWN  167 (809)
Q Consensus        90 ~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd  167 (809)
                      .+|+..-+.|++  +|.+|++|+.||.|++|+....+..   ..++..+...+..  +.-..  +++++|+.+++|.+|.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---P~ti~~~g~~v~~--ia~~s--~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---PETIDISGELVSS--IACYS--NHFLTGSEQNTVLRYK   82 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---CchhhccCceeEE--Eeecc--cceEEeeccceEEEee
Confidence            468888888887  6999999999999999998776321   2222223333322  33333  6899999999999999


Q ss_pred             CCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC
Q 003579          168 ISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (809)
Q Consensus       168 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg  247 (809)
                      +.+++.--.+....-++++++++-+|.++|.|+.|-.|++-++........+..+ .++|.++.|+|.+. +||+.+-||
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~-fLAvss~dG  160 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGN-FLAVSSCDG  160 (933)
T ss_pred             CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCC-EEEEEecCc
Confidence            9988766566666789999999999999999999999999999999988888876 89999999999999 999999999


Q ss_pred             cEEEEECCCceeeeeeec------c-cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeE
Q 003579          248 VISIWNLEKRRLQSVIRE------A-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (809)
Q Consensus       248 ~I~iwdl~~~~~~~~~~~------~-h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (809)
                      .|++||+.++.+..++..      . ....+..++|+|++..++..+.|+.|++|+...-...  .......|...+.++
T Consensus       161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~--f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ--FKLRDKLSSSKFSDL  238 (933)
T ss_pred             eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh--eeecccccccceEEE
Confidence            999999999987766651      1 1456788999999888999999999999976554322  222223344559999


Q ss_pred             EEecCCCEEEEEECCCCEEEEEeee
Q 003579          321 RFYANGRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       321 ~~~~~~~~l~s~~~dg~i~~wd~~~  345 (809)
                      .|+|.|+||++++.||.|.+||+.+
T Consensus       239 ~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEcCCCcEEeeeccCCcEEEEeccc
Confidence            9999999999999999999999876

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=6.9e-23  Score=189.63  Aligned_cols=299  Identities=16%  Similarity=0.267  Sum_probs=228.9

Q ss_pred             cCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeCCe----------EEEEEe----ccCCCcEEEEEEecCCCCEEEE
Q 003579          178 KGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE----------ELVTFT----HSMRGAVTALAFSSDGQPLLAS  242 (809)
Q Consensus       178 ~~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~~~----------~~~~~~----~~~~~~V~~l~fs~dg~~~las  242 (809)
                      ..|.+.|.++...+ .|+++++|+.||.|.+||++...          .+..+.    ..|+-.|.++.|-|-...++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46889999999988 58999999999999999997543          111111    2345689999999976668999


Q ss_pred             EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC---CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCee
Q 003579          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (809)
Q Consensus       243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (809)
                      ++-|.++++||.++.+....+.  -.+.|.+-+++|-.   -++++|..|-.|++.|+..+    .....+.||.+.|.+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHRDGVLA  193 (397)
T ss_pred             ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeeeccccCceEE
Confidence            9999999999999988877776  66778888888743   37778888899999998876    567788999999999


Q ss_pred             EEEecCCCE-EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecC
Q 003579          320 IRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  398 (809)
Q Consensus       320 i~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  398 (809)
                      +.|+|...+ |++|+.||.+++||++.-.                                                   
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRras---------------------------------------------------  222 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRAS---------------------------------------------------  222 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeeccc---------------------------------------------------
Confidence            999996654 6689999999999986431                                                   


Q ss_pred             CceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEE
Q 003579          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (809)
Q Consensus       399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (809)
                                                                     |..++.|...++......     ...+|.+.|.
T Consensus       223 -----------------------------------------------gcf~~lD~hn~k~~p~~~-----~n~ah~gkvn  250 (397)
T KOG4283|consen  223 -----------------------------------------------GCFRVLDQHNTKRPPILK-----TNTAHYGKVN  250 (397)
T ss_pred             -----------------------------------------------ceeEEeecccCccCcccc-----ccccccceee
Confidence                                                           112222222221111111     1248999999


Q ss_pred             EEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee----cC---CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 003579          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE----VG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR  551 (809)
Q Consensus       479 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~---~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~  551 (809)
                      +++|..++.++++++.|..+++|+..+|+....-.    +.   ..-..+. +-+...++.--.++.+.++++-.+..++
T Consensus       251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir  329 (397)
T KOG4283|consen  251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVR  329 (397)
T ss_pred             eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEE
Confidence            99999999999999999999999998775322111    00   1111122 3344445544556999999999999999


Q ss_pred             EEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579          552 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       552 ~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~  586 (809)
                      .+.+|-..|.+.++.|+-+...+++.|+.|..|-.
T Consensus       330 ~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  330 RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            99999999999999999999999999999999975

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=2.3e-23  Score=205.12  Aligned_cols=253  Identities=18%  Similarity=0.342  Sum_probs=202.5

Q ss_pred             EccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCcccc------ceeeeEEcCCccccEEEEeCCCCCCEEEEEeC
Q 003579           89 WSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENL------APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ  159 (809)
Q Consensus        89 ~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~  159 (809)
                      ...|.+.|..+..   +...+++.+..+.|.|||........      .|-..+..|.+....+.+++... ..+++++.
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-g~Lls~~~  198 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-GTLLSGSD  198 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-eeEeeccC
Confidence            3457788877764   35667777888999999997754322      22335666666445666776553 57999999


Q ss_pred             CCeEEEEeCCCCc-------eEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeC--CeEEEEEeccCCCcEEE
Q 003579          160 EGSLQLWNISTKK-------KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTA  229 (809)
Q Consensus       160 dg~i~lwd~~~~~-------~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~V~~  229 (809)
                      |++|++||+....       +...+.+|...|..++|+|- .+++++.+.|+.+.|||+++  .+....... |.++|.|
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~  277 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNC  277 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeE
Confidence            9999999996432       35668999999999999994 56889999999999999995  344444444 4899999


Q ss_pred             EEEecCCCCEEEEEcCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCC-------
Q 003579          230 LAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTT-------  300 (809)
Q Consensus       230 l~fs~dg~~~lasg~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~-------  300 (809)
                      ++|+|-+.++||+|+.|++|++||+++- +.+.++. +|...|..+.|+|.. ..|++++.|+.+.+||+..-       
T Consensus       278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            9999999889999999999999999986 4566666 999999999999965 58999999999999998653       


Q ss_pred             ---CCCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEEEee
Q 003579          301 ---DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       301 ---~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~  344 (809)
                         .+.+.++..-.||...|..+.|+|.. -.++|.+.|+.+.+|...
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence               34466778888999999999999955 467788999999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.6e-23  Score=188.92  Aligned_cols=256  Identities=16%  Similarity=0.260  Sum_probs=208.0

Q ss_pred             EccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (809)
Q Consensus        89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw  166 (809)
                      -..|.+.|+.+..  .|++|++|+.|++|+|+.+..... ..++.++..|.+.+..+++.-+.|-+.|++++.||.|.||
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            4678888987764  699999999999999999987654 3347888999999999998776677999999999999999


Q ss_pred             eCCCCc--eEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEeeCC--eEEEEEeccCCCcEEEEEEecC---CC
Q 003579          167 NISTKK--KLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSD---GQ  237 (809)
Q Consensus       167 d~~~~~--~~~~~~~~~~~I~~l~~sp~--~~~la~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~V~~l~fs~d---g~  237 (809)
                      .-.+|+  ..+.+..|...|++++|.|.  |-.||+|+.||.|.|.+.+..  -....+...|.-.|++++|.|-   |.
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            987773  45667889999999999996  568999999999999998865  2333444445778999999986   31


Q ss_pred             ----------CEEEEEcCCCcEEEEECCCc--eeeeeeecccccceEEEEEecCC----CEEEEEcCCCcEEEEEeeCCC
Q 003579          238 ----------PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANE----PVLMSASADNSIKMWIFDTTD  301 (809)
Q Consensus       238 ----------~~lasg~~dg~I~iwdl~~~--~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~d~~i~vw~~~~~~  301 (809)
                                ..|++|+.|..|+||+..++  +...++. +|.+.|+.++|.|.-    ..|++++.||++.||..+...
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence                      25999999999999999886  3344465 999999999999964    389999999999999877332


Q ss_pred             CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (809)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~  347 (809)
                      +. -....+......+..+.|+..|+.|+.++.|+.+.+|.-....
T Consensus       245 e~-wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G  289 (299)
T KOG1332|consen  245 EP-WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG  289 (299)
T ss_pred             Cc-ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence            22 2333344566789999999999999999999999999765443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.3e-23  Score=200.30  Aligned_cols=290  Identities=17%  Similarity=0.281  Sum_probs=233.1

Q ss_pred             ccccEEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Q 003579           92 HSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS  169 (809)
Q Consensus        92 h~~~V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~  169 (809)
                      -.++|++|.|.  ...|++++.||++++|.++...-.  .+..+.+..-.+.++.|+|.+. ..+++++....++.||+.
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCc-eEEEecccceEEEEeecc
Confidence            35689999984  678999999999999999875442  3666777777788899999993 389999999999999999


Q ss_pred             CCceEEE--EcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579          170 TKKKLYE--FKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (809)
Q Consensus       170 ~~~~~~~--~~~~-~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d  246 (809)
                      +.+....  ..++ ...+...+.||++++||..+..|.|.+....+++.+.+++.  .+.|..++|+.||+ .|++.+.+
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsSdsk-~l~~~~~~  365 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSSDSK-ELLASGGT  365 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEecCCc-EEEEEcCC
Confidence            8876543  3333 34677889999999999999999999999999999999988  58999999999998 56666668


Q ss_pred             CcEEEEECCCceeeeeeecccccce--EEEEEecCCCEEEEEcCCCcEEEEEeeCC--CCCceeEEeccCCCCCCeeEEE
Q 003579          247 GVISIWNLEKRRLQSVIREAHDNAI--ISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFRSGHSAPPLCIRF  322 (809)
Q Consensus       247 g~I~iwdl~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~s~d~~i~vw~~~~~--~~~~~~~~~~~~h~~~v~~i~~  322 (809)
                      |.|.+||++...+++.+.  ..+.|  ++++.++++.+|++|+..|.|.||+.+..  ...++++..+..-...|+++.|
T Consensus       366 GeV~v~nl~~~~~~~rf~--D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F  443 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFV--DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF  443 (514)
T ss_pred             ceEEEEecCCcceEEEEe--ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence            999999999999888887  33444  56677789999999999999999986543  3456777777778889999999


Q ss_pred             ecCCCEEEEEEC--CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCc
Q 003579          323 YANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (809)
Q Consensus       323 ~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  400 (809)
                      ++|++.|+.++.  +..+++-.+.+...-..                                                 
T Consensus       444 n~d~qiLAiaS~~~knalrLVHvPS~TVFsN-------------------------------------------------  474 (514)
T KOG2055|consen  444 NHDAQILAIASRVKKNALRLVHVPSCTVFSN-------------------------------------------------  474 (514)
T ss_pred             CcchhhhhhhhhccccceEEEeccceeeecc-------------------------------------------------
Confidence            999999988774  56777776543321111                                                 


Q ss_pred             eEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (809)
Q Consensus       401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~  454 (809)
                                      +++....-+.++|++|||.|.++++|...|.+.+|.+.
T Consensus       475 ----------------fP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  475 ----------------FPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ----------------CCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence                            11112233889999999999999999999999999864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=7.3e-23  Score=191.32  Aligned_cols=282  Identities=16%  Similarity=0.274  Sum_probs=217.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeee
Q 003579          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (809)
Q Consensus       184 I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~  263 (809)
                      -.|+.|++.|.+||+|+.||.|.|||+.+...-+.+..| ..+|++++||+||+ .|++++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEE
Confidence            689999999999999999999999999998876666665 88999999999999 8999999999999999999999998


Q ss_pred             ecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579          264 REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (809)
Q Consensus       264 ~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  342 (809)
                      +  ..++|+.+.|+|.....+.++ .+.+                         ..-+.|++.-..++.-..|+.+.   
T Consensus       104 r--f~spv~~~q~hp~k~n~~va~~~~~s-------------------------p~vi~~s~~~h~~Lp~d~d~dln---  153 (405)
T KOG1273|consen  104 R--FDSPVWGAQWHPRKRNKCVATIMEES-------------------------PVVIDFSDPKHSVLPKDDDGDLN---  153 (405)
T ss_pred             E--ccCccceeeeccccCCeEEEEEecCC-------------------------cEEEEecCCceeeccCCCccccc---
Confidence            7  788999999999654333222 1111                         12223332112222223333211   


Q ss_pred             eeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC
Q 003579          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (809)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (809)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (405)
T KOG1273|consen  154 --------------------------------------------------------------------------------  153 (405)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (809)
Q Consensus       423 ~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  502 (809)
                        ....+..+.+.|+++++|++.|.+.+|+..+-+.+..+..       .....|..+.++..|+.++.-+.|..||.|+
T Consensus       154 --~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri-------ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  154 --SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI-------TSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             --cccccccccCCCCEEEEecCcceEEEEecchheeeeeeee-------chheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence              1122235778899999999999999999999988888762       2247889999999999999999999999999


Q ss_pred             CCCC-------cee--eeee---cCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCCeEEEEEecCC-CCeeeEEECCC
Q 003579          503 FKGR-------DLK--SRWE---VGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHT-DRITDFCFSED  568 (809)
Q Consensus       503 ~~~~-------~~~--~~~~---~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~~~~~~~~~h~-~~I~~l~fspd  568 (809)
                      ++.-       ++.  +.++   ....=.+++|+.+|.|+++++. -..++||.-..|.+++.+.|.. ....++.|+|-
T Consensus       225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence            7621       111  1111   1134457899999999988864 4689999999999999999988 66889999999


Q ss_pred             CCEEEEEeCCCeEEEEEcC
Q 003579          569 GKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       569 g~~l~s~s~D~~I~vwd~~  587 (809)
                      ...+++- ..|.|++|...
T Consensus       305 rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  305 RPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             eeeeeec-cCCceEEEEee
Confidence            8888877 57899999854

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.2e-22  Score=188.04  Aligned_cols=308  Identities=18%  Similarity=0.272  Sum_probs=232.2

Q ss_pred             EccccccEEEEEEe---CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579           89 WSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL  165 (809)
Q Consensus        89 ~~~h~~~V~~l~~~---g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l  165 (809)
                      ...|.+.|.++..+   |.++++|+.||.|.|||++.....    ..    ...              ++     ..+++
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~----e~----s~l--------------i~-----k~~c~   91 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY----EA----SGL--------------IA-----KHKCI   91 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccch----hh----ccc--------------ee-----heeee
Confidence            35788999999974   999999999999999999775431    10    000              00     01111


Q ss_pred             EeCCCCceEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC--CCEEEE
Q 003579          166 WNISTKKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG--QPLLAS  242 (809)
Q Consensus       166 wd~~~~~~~~~~~~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg--~~~las  242 (809)
                        +.    ...-.+|.-.|..+.|-| |...+.+++-|.++++||..+-+....|..  ++.|++-+++|-.  .-++|+
T Consensus        92 --v~----~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m--e~~VYshamSp~a~sHcLiA~  163 (397)
T KOG4283|consen   92 --VA----KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM--EGKVYSHAMSPMAMSHCLIAA  163 (397)
T ss_pred             --cc----ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec--CceeehhhcChhhhcceEEEE
Confidence              00    011246788899999988 556888889999999999999999999987  5789999998853  347888


Q ss_pred             EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCC-----------ceeEEec
Q 003579          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-----------PRLLRFR  310 (809)
Q Consensus       243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~-----------~~~~~~~  310 (809)
                      |..+-.|++-|+.+|...+++. +|.+.|.++.|+|... .|++|+.||.|++||+....+-           +..++..
T Consensus       164 gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n  242 (397)
T KOG4283|consen  164 GTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTN  242 (397)
T ss_pred             ecCCCcEEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccc
Confidence            8899999999999999999999 9999999999999876 6789999999999999766322           2334455


Q ss_pred             cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579          311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (809)
Q Consensus       311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  390 (809)
                      ..|.+.+..++|..++.++++++.|..+++|+..++.....-.......+.                             
T Consensus       243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-----------------------------  293 (397)
T KOG4283|consen  243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-----------------------------  293 (397)
T ss_pred             ccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc-----------------------------
Confidence            678999999999999999999999999999998776543221110000000                             


Q ss_pred             eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccc
Q 003579          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN  470 (809)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~  470 (809)
                                                     .  .....+. +.|...++.--.++.+.++++-+|..+..+.       
T Consensus       294 -------------------------------~--~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------  332 (397)
T KOG4283|consen  294 -------------------------------T--SFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------  332 (397)
T ss_pred             -------------------------------c--cceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-------
Confidence                                           0  0111122 2233333333345889999999999988886       


Q ss_pred             cCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579          471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (809)
Q Consensus       471 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  503 (809)
                       .|...|.+.++-|+=+...++..|+.+..|-.
T Consensus       333 -~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  333 -THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             -cccceeeEEeecCchhhhhccccCCccccccc
Confidence             88899999999999999999999999999975

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=8.1e-23  Score=201.22  Aligned_cols=249  Identities=20%  Similarity=0.352  Sum_probs=201.3

Q ss_pred             cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee----------eeeeecccccceEEEEEecCCC-EEEEEcCCC
Q 003579          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEP-VLMSASADN  290 (809)
Q Consensus       222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~----------~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~  290 (809)
                      .|.+.|+.+.+.|....++|+++..+.|.|||..+..-          -..+. +|...-.+++|++... .|++++.|+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeeccCCC
Confidence            45789999999999988999999999999999865421          12555 8988788899998654 899999999


Q ss_pred             cEEEEEeeCCCCC---ceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccc
Q 003579          291 SIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  366 (809)
Q Consensus       291 ~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  366 (809)
                      .|.+||+......   ......+.+|...|..++|++ +...+.+++.|+.+.+||+++. .....              
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~--------------  265 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPS--------------  265 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCc--------------
Confidence            9999999876543   345567789999999999999 6678889999999999998753 11000              


Q ss_pred             hhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 003579          367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG  446 (809)
Q Consensus       367 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g  446 (809)
                                                                                                      
T Consensus       266 --------------------------------------------------------------------------------  265 (422)
T KOG0264|consen  266 --------------------------------------------------------------------------------  265 (422)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEEEEE
Q 003579          447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVY  523 (809)
Q Consensus       447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~  523 (809)
                                   .        ...+|.+.|.+++|+|-+ ..||+|+.|++|++||+++- +++.++..+ ..|.++.|
T Consensus       266 -------------~--------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W  324 (422)
T KOG0264|consen  266 -------------H--------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW  324 (422)
T ss_pred             -------------c--------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEe
Confidence                         0        013899999999999954 67888999999999999864 345555544 89999999


Q ss_pred             eeCC-CEEEEEeCCCeEEEEEcCCC--------------eEEEEEecCCCCeeeEEECCCCCEE-EEEeCCCeEEEEEcC
Q 003579          524 HRVN-GLLATVADDLVIRLFDVVAL--------------RMVRKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVI  587 (809)
Q Consensus       524 s~~~-~~la~~~~d~~I~v~d~~~~--------------~~~~~~~~h~~~I~~l~fspdg~~l-~s~s~D~~I~vwd~~  587 (809)
                      +|.. ..||+++.|+.+.|||+..-              +++..-.||+..|.++.|+|+..|+ +|++.|+.+.||...
T Consensus       325 SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  325 SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9965 57888999999999998642              3456667999999999999988875 578899999999875

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=2.3e-22  Score=197.41  Aligned_cols=304  Identities=20%  Similarity=0.276  Sum_probs=234.3

Q ss_pred             EECCCceeeeeeecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCE
Q 003579          252 WNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH  328 (809)
Q Consensus       252 wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~  328 (809)
                      +|+..-......+ -+.+.|++++|+|..+  ++++|..-|.|-+||+++......-+..+..|+.+|.++.|+| +...
T Consensus       171 l~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  171 LDLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence            4444445555565 6889999999999765  7888888999999999755555555667789999999999999 6678


Q ss_pred             EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (809)
Q Consensus       329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (809)
                      +++.+.||+|++-|+........++.                                                      
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~------------------------------------------------------  275 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSL------------------------------------------------------  275 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhc------------------------------------------------------
Confidence            99999999999999876432211110                                                      


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-C
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T  487 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~  487 (809)
                                  .........+.++.+...++.|..=|...+||++.+.......       .-|...|++++++|.. .
T Consensus       276 ------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  276 ------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcccceeecCCCCch
Confidence                        0111456677788888888888888899999998876533222       3788899999999976 6


Q ss_pred             EEEEEeCcCeEEEEECCCCc-----eeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC----CCeEEEEEecCCC
Q 003579          488 LMISAGYHGDIKVWDFKGRD-----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV----ALRMVRKFEGHTD  558 (809)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~----~~~~~~~~~~h~~  558 (809)
                      +++|++.|++++|||++.-.     .+..+.+...|.+..|||.+..|++.+.|..|+|||..    ...+...+. |..
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~  415 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN  415 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence            78999999999999987532     35667778999999999999999999999999999983    333344443 321


Q ss_pred             ------CeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc--eEE-EEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          559 ------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITA-LSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       559 ------~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~--v~~-l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                            ......|.||..++++|-.-..|-|+|-..++.+..+..+..  |.+ ..|+|-+..+++|+..++-|+||.++
T Consensus       416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence                  133568999999999999999999999998888887765443  444 58999999777777766679999876


Q ss_pred             c
Q 003579          630 C  630 (809)
Q Consensus       630 ~  630 (809)
                      .
T Consensus       496 ~  496 (498)
T KOG4328|consen  496 K  496 (498)
T ss_pred             C
Confidence            3

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.8e-20  Score=197.86  Aligned_cols=449  Identities=16%  Similarity=0.226  Sum_probs=310.8

Q ss_pred             EeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCceEEEEcC
Q 003579          101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKG  179 (809)
Q Consensus       101 ~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~  179 (809)
                      .|+++++.+. +..|.|+...++++    ++.+..+........+.|.... .++++++.+|.|++||...++++.++..
T Consensus        26 nD~k~l~~~~-~~~V~VyS~~Tg~~----i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   26 NDAKFLFLCT-GNFVKVYSTATGEC----ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             cCCcEEEEee-CCEEEEEecchHhh----hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            3677887776 78899999999999    6677777777788888777643 5788999999999999999999999876


Q ss_pred             CCCCEEEEEEcCC---CCEEE-EEeCCCeE-EEEEeeCCeEEEEEe------------ccCCCcEEEEEEecCCCCEEEE
Q 003579          180 WGSSISSCVSSPA---LDVVA-VGCSDGKI-HVHNVRYDEELVTFT------------HSMRGAVTALAFSSDGQPLLAS  242 (809)
Q Consensus       180 ~~~~I~~l~~sp~---~~~la-~g~~dg~i-~iwd~~~~~~~~~~~------------~~~~~~V~~l~fs~dg~~~las  242 (809)
                      + .++.++.+.|.   ....+ .+..|..+ .....+..+....+.            ..+. .-.++.+++.|. +.+.
T Consensus       101 ~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I~~~~~ge-~~~i  177 (792)
T KOG1963|consen  101 N-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSIVDNNSGE-FKGI  177 (792)
T ss_pred             C-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccEEEcCCce-EEEE
Confidence            3 44555554331   11222 22222111 111111111111111            1111 146788888887 3333


Q ss_pred             EcCCCcEEEEECCCcee---eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCee
Q 003579          243 GASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (809)
Q Consensus       243 g~~dg~I~iwdl~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (809)
                       ..+..+.+|+..++..   .......|.-.+++.+++|++++++++..||.|.+|.--..+........+.-|..+|++
T Consensus       178 -~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  178 -VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             -EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence             3456788998887541   111223577778999999999999999999999999533312333344556689999999


Q ss_pred             EEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579          320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (809)
Q Consensus       320 i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (809)
                      +.|+++|.+|++||..+.+.+|.+.++++ +-++                                              
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP----------------------------------------------  289 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP----------------------------------------------  289 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCCc-cccc----------------------------------------------
Confidence            99999999999999999999999987762 1111                                              


Q ss_pred             ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccc---cccCcccc
Q 003579          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGE  476 (809)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~---~~~~h~~~  476 (809)
                                            .-.++|..+.+|||++..++...|+.|.+..+.+.............   ......+-
T Consensus       290 ----------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l  347 (792)
T KOG1963|consen  290 ----------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL  347 (792)
T ss_pred             ----------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence                                  12278999999999999999999999999998766555444322111   11234556


Q ss_pred             EEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec------------CCCeEEEEEeeCCCEEEEEeC--------C
Q 003579          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------GCSLVKIVYHRVNGLLATVAD--------D  536 (809)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~i~~~~~s~~~~~la~~~~--------d  536 (809)
                      .+.++++|.-+.++-.+..|.|.+||+.+.+.+..+..            .-.++.++.+..|.++++.-.        |
T Consensus       348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~  427 (792)
T KOG1963|consen  348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD  427 (792)
T ss_pred             ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence            78999999778888899999999999988877665532            135777788888888888632        2


Q ss_pred             --CeEEEEEcCCC----eEEEE-EecCCCCeeeEEECCCC-C-EEEEEeCCCeEEEEEcCCcc----------E--EEEe
Q 003579          537 --LVIRLFDVVAL----RMVRK-FEGHTDRITDFCFSEDG-K-WLLSSGMDGSLRIWDVILAR----------Q--IDAI  595 (809)
Q Consensus       537 --~~I~v~d~~~~----~~~~~-~~~h~~~I~~l~fspdg-~-~l~s~s~D~~I~vwd~~~~~----------~--i~~~  595 (809)
                        -.+++|-....    .+... -..|...+...+|.+.. . ..++++.||.++||-+.+.+          |  +..+
T Consensus       428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence              35677865433    22222 23588777777765532 2 78999999999999884321          1  1122


Q ss_pred             eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579          596 HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (809)
Q Consensus       596 ~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (809)
                       +..++++++||.||..|+.+..|  .|.+||...
T Consensus       508 -~k~~i~a~~fs~dGslla~s~~~--~Itiwd~~~  539 (792)
T KOG1963|consen  508 -HKTPITALCFSQDGSLLAVSFDD--TITIWDYDT  539 (792)
T ss_pred             -ccCcccchhhcCCCcEEEEecCC--EEEEecCCC
Confidence             35569999999999777666544  599999765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=6.5e-21  Score=194.67  Aligned_cols=275  Identities=13%  Similarity=0.211  Sum_probs=208.8

Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE
Q 003579          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT  218 (809)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~  218 (809)
                      .+...+|.|+|  ..++.+. +..+.+||.+.|.+++++++|...|.|++|+.+|+++|+|+.|..|.+|+.+-   -..
T Consensus        14 ci~d~afkPDG--sqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDG--TQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI   87 (1081)
T ss_pred             chheeEECCCC--ceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence            55678899999  6777764 45699999999999999999999999999999999999999999999998553   223


Q ss_pred             EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (809)
Q Consensus       219 ~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~  298 (809)
                      ++-.|.+.|.|+.|+|-.. .|++++- ...-+|..+.......   .....+.+++|..||.+++.|-.||+|.+-+- 
T Consensus        88 LkYSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-  161 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-  161 (1081)
T ss_pred             eeeccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeecC-
Confidence            3344578999999999887 7888874 4577898765543322   23567899999999999999999999998732 


Q ss_pred             CCCCCceeEEeccCCCCCCeeEEEecCC-----CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhcc
Q 003579          299 TTDGDPRLLRFRSGHSAPPLCIRFYANG-----RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (809)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~-----~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (809)
                       .......+....|...+|.+++|+|..     ..+++.....++.++.+...                           
T Consensus       162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---------------------------  213 (1081)
T KOG1538|consen  162 -NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---------------------------  213 (1081)
T ss_pred             -CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------------------------
Confidence             222223344445678899999999943     24555555555555544221                           


Q ss_pred             CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003579          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (809)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~  453 (809)
                                                           ..++     ...-.-...|+.+-++|.++++|++++.+.+|.-
T Consensus       214 -------------------------------------~Igk-----~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  214 -------------------------------------QIGK-----DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR  251 (1081)
T ss_pred             -------------------------------------eecc-----cccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence                                                 1110     1111245678889999999999999999999974


Q ss_pred             CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                       .|....+..        .....|+.++..|++++++.|+.||+|..|++.
T Consensus       252 -~GvrLGTvg--------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  252 -DGVRLGTVG--------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             -cCeEEeecc--------ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence             455555554        466789999999999999999999999999864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=3e-22  Score=204.22  Aligned_cols=386  Identities=17%  Similarity=0.168  Sum_probs=260.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCce------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE--Eec
Q 003579          150 YLNKVIVGSQEGSLQLWNISTKKK------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT--FTH  221 (809)
Q Consensus       150 ~~~~l~~~~~dg~i~lwd~~~~~~------~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~--~~~  221 (809)
                      +-..|+++.++|.|.++|.+....      ++.+..|...|..+.|.|....|++++.|.++++||++..+.+..  +.+
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence            336799999999999999865432      355678999999999999777899999999999999999887766  444


Q ss_pred             cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee---------------------------eeeeecccccceEE-
Q 003579          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---------------------------QSVIREAHDNAIIS-  273 (809)
Q Consensus       222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~---------------------------~~~~~~~h~~~V~~-  273 (809)
                       |.+.|.+++|.++...++++|+.||.|.|||++-...                           +..- .+|...|.+ 
T Consensus       143 -H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ss  220 (720)
T KOG0321|consen  143 -HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSS  220 (720)
T ss_pred             -cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeee
Confidence             4899999999999998999999999999999863320                           0111 145555665 


Q ss_pred             --EEEecCCCEEEEEcC-CCcEEEEEeeCCCCCc----eeEEeccCC---CCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579          274 --LHFFANEPVLMSASA-DNSIKMWIFDTTDGDP----RLLRFRSGH---SAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       274 --l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~----~~~~~~~~h---~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  343 (809)
                        +.+..|+..|+++|. |+.|+|||+.......    .......-|   .-.+.++.....|.+|+....|++|..|++
T Consensus       221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm  300 (720)
T KOG0321|consen  221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM  300 (720)
T ss_pred             eEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence              666778889999988 9999999998764322    112222223   335667777777888888778999999998


Q ss_pred             eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (809)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (809)
                      ..........                         +...                                       ..
T Consensus       301 ~s~s~sP~~~-------------------------~sg~---------------------------------------~~  316 (720)
T KOG0321|consen  301 RSLSISPVAE-------------------------FSGK---------------------------------------LN  316 (720)
T ss_pred             cccCcCchhh-------------------------ccCc---------------------------------------cc
Confidence            7653321110                         0000                                       00


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEE
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWD  502 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd  502 (809)
                      ...-..-..+|++.+++.|+.++..++|.+.+........       .+|...|++++|.|.. .-+++|+.|..+++|+
T Consensus       317 ~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  317 SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------hCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence            0222334679999999999999999999998876655443       4999999999998854 4578889999999999


Q ss_pred             CCCCcee--------------eeeecC--------------------------CCeEEEEEeeCCCEEEEEe----CCCe
Q 003579          503 FKGRDLK--------------SRWEVG--------------------------CSLVKIVYHRVNGLLATVA----DDLV  538 (809)
Q Consensus       503 ~~~~~~~--------------~~~~~~--------------------------~~i~~~~~s~~~~~la~~~----~d~~  538 (809)
                      +..+-..              ..+..+                          .....++..|.+.-.+.+.    ....
T Consensus       390 l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR~~~~r~~ssP~s~a~~~s~~s~~~~~~~t~qt~~  469 (720)
T KOG0321|consen  390 LSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPREGMNRISSSPVSLACSPSGASDDCGYGVTDQTSG  469 (720)
T ss_pred             ccCchhhccccccchhhhhhhhhhhccccccccccccccccccchhhhccccccCccchhcCcCCcccccCCCccccccc
Confidence            8654111              111000                          1111122222222222111    1112


Q ss_pred             EEEEEcCCCeEEE--EEecCCCCeeeEEECCCCCEEEEEeC-----------CCeEEEEEcCCccEEEEeeeCcceEEEE
Q 003579          539 IRLFDVVALRMVR--KFEGHTDRITDFCFSEDGKWLLSSGM-----------DGSLRIWDVILARQIDAIHVDVSITALS  605 (809)
Q Consensus       539 I~v~d~~~~~~~~--~~~~h~~~I~~l~fspdg~~l~s~s~-----------D~~I~vwd~~~~~~i~~~~~~~~v~~l~  605 (809)
                      |...+....+...  .-.+|...|+...+++.++.+++.+-           +..+++|...........+.......+.
T Consensus       470 i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~ar~~~r~i  549 (720)
T KOG0321|consen  470 IVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREARKKSRLI  549 (720)
T ss_pred             ceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhccccccccee
Confidence            3333333222211  12246777888888888878888887           8899999876655544433323455566


Q ss_pred             EcC
Q 003579          606 LSP  608 (809)
Q Consensus       606 ~sp  608 (809)
                      |+|
T Consensus       550 fs~  552 (720)
T KOG0321|consen  550 FSP  552 (720)
T ss_pred             ccC
Confidence            665

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.7e-23  Score=213.55  Aligned_cols=284  Identities=20%  Similarity=0.307  Sum_probs=218.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe----EEEEEeccC--CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC
Q 003579          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (809)
Q Consensus       183 ~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~--~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~  256 (809)
                      ...++...++...|++++. ..+.||.+....    +...+....  .-.+..+.|..-...+||+++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            4556666788777887775 467777765332    222222110  123556777765555999999999999999988


Q ss_pred             ---ceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEE
Q 003579          257 ---RRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILS  331 (809)
Q Consensus       257 ---~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s  331 (809)
                         .+.+..+. .|...++++.|++-.+ +|++||.||.|++||+...+.    ...+.+....|..+.|+| .+..+++
T Consensus       120 ~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s  194 (839)
T KOG0269|consen  120 SIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFAS  194 (839)
T ss_pred             cccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEE
Confidence               45666666 8999999999999665 889999999999999987743    344456888999999999 7788999


Q ss_pred             EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (809)
Q Consensus       332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (809)
                      +...|.+++||++...+...                                                            
T Consensus       195 ~~dsG~lqlWDlRqp~r~~~------------------------------------------------------------  214 (839)
T KOG0269|consen  195 IHDSGYLQLWDLRQPDRCEK------------------------------------------------------------  214 (839)
T ss_pred             ecCCceEEEeeccCchhHHH------------------------------------------------------------
Confidence            99999999999875432110                                                            


Q ss_pred             ecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE
Q 003579          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (809)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  491 (809)
                                                                       .        +.+|.++|.++.|+|++.+|||
T Consensus       215 -------------------------------------------------k--------~~AH~GpV~c~nwhPnr~~lAT  237 (839)
T KOG0269|consen  215 -------------------------------------------------K--------LTAHNGPVLCLNWHPNREWLAT  237 (839)
T ss_pred             -------------------------------------------------H--------hhcccCceEEEeecCCCceeee
Confidence                                                             0        1389999999999999999999


Q ss_pred             EeCcCeEEEEECCCCc--eeeeeecCCCeEEEEEeeCCCEE-EEEe--CCCeEEEEEcCCC-eEEEEEecCCCCeeeEEE
Q 003579          492 AGYHGDIKVWDFKGRD--LKSRWEVGCSLVKIVYHRVNGLL-ATVA--DDLVIRLFDVVAL-RMVRKFEGHTDRITDFCF  565 (809)
Q Consensus       492 ~~~dg~i~iwd~~~~~--~~~~~~~~~~i~~~~~s~~~~~l-a~~~--~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~f  565 (809)
                      ||.|++|+|||..+.+  .+.++....++.++.|-|+..+. |+++  .|-.|+|||++.. -+-+++..|+..++.++|
T Consensus       238 GGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W  317 (839)
T KOG0269|consen  238 GGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW  317 (839)
T ss_pred             cCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec
Confidence            9999999999998654  45566667999999999987754 4443  4889999999865 346788899999999999


Q ss_pred             CC-CCCEEEEEeCCCeEEEEEcCCc
Q 003579          566 SE-DGKWLLSSGMDGSLRIWDVILA  589 (809)
Q Consensus       566 sp-dg~~l~s~s~D~~I~vwd~~~~  589 (809)
                      .. |-..|.+++.||+|..-.++++
T Consensus       318 ~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  318 DSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cCCCceeeEeecCccHHHHhhhhcc
Confidence            65 5567889999998876555443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=4e-19  Score=195.57  Aligned_cols=372  Identities=28%  Similarity=0.524  Sum_probs=285.6

Q ss_pred             EEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCc-cccceeeeEEcCCc-cccEEEE-eCCCCCC-EEEEEeC-C
Q 003579           88 TWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIE-ENLAPVGHVKLDDK-FTPTCIM-HPDTYLN-KVIVGSQ-E  160 (809)
Q Consensus        88 ~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~p~~~~~-~l~~~~~-d  160 (809)
                      ...+|...+..+.+  .+..++.++.|+.+.+|+..... .    ...+..... ......+ +++.  + .++..+. +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL----IKSLEGLHDSSVSKLALSSPDG--NSILLASSSLD  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee----EEEEeccCCCceeeEEEECCCc--ceEEeccCCCC
Confidence            46688889998887  57888888889999999998886 3    344443222 2333334 5555  4 4444344 8


Q ss_pred             CeEEEEeCCC-CceEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579          161 GSLQLWNIST-KKKLYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (809)
Q Consensus       161 g~i~lwd~~~-~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~  238 (809)
                      +.+.+|+... ......+..|...|..++|+|++..+++++. ++.+++|++..+..+..+..+ ...|.+++|+|++..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  212 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDGGL  212 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCcce
Confidence            9999999988 8899999999999999999999998998885 999999999988888888774 789999999999873


Q ss_pred             EEEEEcCCCcEEEEECCCceeee-eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579          239 LLASGASSGVISIWNLEKRRLQS-VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (809)
Q Consensus       239 ~lasg~~dg~I~iwdl~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (809)
                      ++++++.|+.|++||...+.... .+. +|.... ...|++++..+++++.|+.+++|+......   .+....+|...+
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v  287 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSV  287 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc---EEEEEecCCccE
Confidence            45555899999999998777777 455 787775 448999998999999999999998876643   222226889999


Q ss_pred             eeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec
Q 003579          318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (809)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  397 (809)
                      .++.|.|++..+++++.|+.+.+|+...........                                            
T Consensus       288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------------------------------------  323 (466)
T COG2319         288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--------------------------------------------  323 (466)
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--------------------------------------------
Confidence            999999988888888888888999754332111100                                            


Q ss_pred             CCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccE
Q 003579          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (809)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (809)
                                                                                      .        ..|...+
T Consensus       324 ----------------------------------------------------------------~--------~~~~~~~  331 (466)
T COG2319         324 ----------------------------------------------------------------L--------KGHEGPV  331 (466)
T ss_pred             ----------------------------------------------------------------e--------cccCCce
Confidence                                                                            0        1455567


Q ss_pred             EEEEEcCCCCEEEEE-eCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEE-EeCCCeEEEEEcCCCeEEEEEec
Q 003579          478 VGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT-VADDLVIRLFDVVALRMVRKFEG  555 (809)
Q Consensus       478 ~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~-~~~d~~I~v~d~~~~~~~~~~~~  555 (809)
                      ..+.+.+++..++.+ ..|+.+.+|+...............+..+.+.+ ...+.. +..++.+.+|+............
T Consensus       332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (466)
T COG2319         332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG  410 (466)
T ss_pred             EEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC
Confidence            777773232455555 677889999988877333333334478888888 543343 67899999999999888877776


Q ss_pred             CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579          556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       556 h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~  588 (809)
                      +...+....+++++..+++++.++.+++|++.+
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            657899999999999999999999999999998

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=4e-19  Score=195.62  Aligned_cols=372  Identities=26%  Similarity=0.457  Sum_probs=291.1

Q ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe-EEEEEeccCCCcEEEEEE-ecCCCCEEEEEc-CCCcEEE
Q 003579          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAF-SSDGQPLLASGA-SSGVISI  251 (809)
Q Consensus       175 ~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~V~~l~f-s~dg~~~lasg~-~dg~I~i  251 (809)
                      ..+..|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++..+ .++.+.+
T Consensus        59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            3456789999999999999999999999999999999887 666666643346777777 777763444434 4899999


Q ss_pred             EECCC-ceeeeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC-E
Q 003579          252 WNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-H  328 (809)
Q Consensus       252 wdl~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~  328 (809)
                      ||... ......+. .|...|..+.|+|++..+++++. |+.+++|+....    ..+....+|...+.+++|+|++. .
T Consensus       139 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         139 WDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             EEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceE
Confidence            99998 67777777 89999999999999998888886 999999988763    56667778999999999999987 5


Q ss_pred             EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (809)
Q Consensus       329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (809)
                      +++++.|+.+++|+.........                                                         
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~---------------------------------------------------------  236 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRS---------------------------------------------------------  236 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEee---------------------------------------------------------
Confidence            55559999999996542221110                                                         


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeeeCcccccccCccccEEEEEEcCCCC
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (809)
                                ....|.... ...+++++.++++++.++.+++|++..... ...+        ..|...+.++.++|++.
T Consensus       237 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         237 ----------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------SGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             ----------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------ecCCccEEEEEECCCCC
Confidence                      111222332 228999999999999999999999987765 3332        27889999999999888


Q ss_pred             EEEEEeCcCeEEEEECCCCceeeeee--cC-CCeEEEEEeeCCCEEEEE-eCCCeEEEEEcCCCeEEEEEecCCCCeeeE
Q 003579          488 LMISAGYHGDIKVWDFKGRDLKSRWE--VG-CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (809)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~~-~~i~~~~~s~~~~~la~~-~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l  563 (809)
                      .+++++.|+.+++|+..+........  .+ ..+..+.+.+++..++.+ ..|+.+++|+............+. .+..+
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~  376 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV  376 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence            88889999999999999887766665  34 458888883332556555 678999999998887333333222 28899


Q ss_pred             EECCCCCEEEE-EeCCCeEEEEEcCCccEEEEeeeC-cceEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579          564 CFSEDGKWLLS-SGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (809)
Q Consensus       564 ~fspdg~~l~s-~s~D~~I~vwd~~~~~~i~~~~~~-~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (809)
                      .+++ ...++. +..++.+.+|+............. ..+....+++++..+++++.+. .+++|+...
T Consensus       377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  443 (466)
T COG2319         377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN-TIRLWDLKT  443 (466)
T ss_pred             EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCC-cEEEEeccC
Confidence            9999 544444 688999999999999888887777 7899999999999999977777 699999876

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=1e-21  Score=192.91  Aligned_cols=304  Identities=16%  Similarity=0.176  Sum_probs=232.3

Q ss_pred             EeCCCCceEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEEeeCC---e-EEEEEeccCCCcEEEEEEecCCCCE
Q 003579          166 WNISTKKKLYEFKGWGSSISSCVSSPAL--DVVAVGCSDGKIHVHNVRYD---E-ELVTFTHSMRGAVTALAFSSDGQPL  239 (809)
Q Consensus       166 wd~~~~~~~~~~~~~~~~I~~l~~sp~~--~~la~g~~dg~i~iwd~~~~---~-~~~~~~~~~~~~V~~l~fs~dg~~~  239 (809)
                      +|+.+.......+.+.++|++++|+|..  +++|+|..-|.|-+||+.+.   . .+..+.. |.++|.+|.|+|.....
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhh
Confidence            4444555556677788999999999965  58999999999999999522   2 3444444 48899999999988778


Q ss_pred             EEEEcCCCcEEEEECCCceeeeeeec-ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCe
Q 003579          240 LASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (809)
Q Consensus       240 lasg~~dg~I~iwdl~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (809)
                      +.+.+.||+|++-|++++.....+.. .....+.++.|+.+.+.++.+..=|...+||.+......   ..+.-|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~---~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY---ENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc---hhhhhhhcccc
Confidence            88999999999999998754443331 244567889999988888888887899999998876433   33346788999


Q ss_pred             eEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec
Q 003579          319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (809)
Q Consensus       319 ~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  397 (809)
                      .++++| ...+|+++|.|++.++||+++-....+                                              
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----------------------------------------------  360 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----------------------------------------------  360 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCCC----------------------------------------------
Confidence            999999 667899999999999999865321110                                              


Q ss_pred             CCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccE
Q 003579          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (809)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (809)
                                                          |   +|                             ....|...|
T Consensus       361 ------------------------------------p---~l-----------------------------st~~HrrsV  372 (498)
T KOG4328|consen  361 ------------------------------------P---FL-----------------------------STLPHRRSV  372 (498)
T ss_pred             ------------------------------------c---ce-----------------------------eccccccee
Confidence                                                0   00                             013799999


Q ss_pred             EEEEEcCCCCEEEEEeCcCeEEEEEC----CCCceeeeeecC------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579          478 VGVACDSTNTLMISAGYHGDIKVWDF----KGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (809)
Q Consensus       478 ~~l~~~~~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~  547 (809)
                      .+..|+|.+-.|++.+.|..|+|||.    ..-.+..++.+.      -.....+|.|+..++++|-.-..|-|+|-..+
T Consensus       373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            99999999888999999999999998    344555666554      23456789999999999999899999999999


Q ss_pred             eEEEEEecCCC-Ceee-EEECCCCCEEEEE-eCCCeEEEEEcC
Q 003579          548 RMVRKFEGHTD-RITD-FCFSEDGKWLLSS-GMDGSLRIWDVI  587 (809)
Q Consensus       548 ~~~~~~~~h~~-~I~~-l~fspdg~~l~s~-s~D~~I~vwd~~  587 (809)
                      +.+..+.+... .|.+ ..|+|-+.-+++| +..|.|.||--.
T Consensus       453 q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  453 QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             EEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            98888765543 4554 4799987745544 567888888644

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=5.2e-22  Score=200.78  Aligned_cols=317  Identities=14%  Similarity=0.186  Sum_probs=235.3

Q ss_pred             cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC-EEEEEECCCCEEEEEe
Q 003579          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV  343 (809)
Q Consensus       265 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~  343 (809)
                      .+|.+.|.++...|.|.+|++|+.||+|++|.+.++    ++++... ..+.|.|++|+|.+. .++.....+.+.+.+.
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            399999999999999999999999999999998877    6776653 445799999999543 3333444444666554


Q ss_pred             eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (809)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (809)
                      .-+.....-...             +.+.-.|                  .-...+.++..|.-........-+.....+
T Consensus       472 ~~G~~~e~~~t~-------------ell~~~~------------------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~  520 (733)
T KOG0650|consen  472 IFGDRLEVGPTK-------------ELLASAP------------------NESEPDAAVVTWSRASLDELEKGVCIVIKH  520 (733)
T ss_pred             cccchhhhcchh-------------hhhhcCC------------------CccCCcccceeechhhhhhhccceEEEEec
Confidence            433211110000             0000000                  001123355666554322222112223346


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                      ...|+.+.|+..|.|+++...+   ..|.++++........|.        ...+.|.++.|+|...+|+.++. ..|++
T Consensus       521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--------kskG~vq~v~FHPs~p~lfVaTq-~~vRi  591 (733)
T KOG0650|consen  521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--------KSKGLVQRVKFHPSKPYLFVATQ-RSVRI  591 (733)
T ss_pred             CCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh--------hcCCceeEEEecCCCceEEEEec-cceEE
Confidence            6899999999999999987664   478888888776665553        56788999999999999988877 78999


Q ss_pred             EECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCCCEEEEEeCC
Q 003579          501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  578 (809)
Q Consensus       501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D  578 (809)
                      ||+..+.+++.+... ..|..++.||.|.-|++++.|+.+..+|+.-. ++.+++.-|...+++++|++.-.++++|+.|
T Consensus       592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            999998888877655 78999999999999999999999999999754 6788899999999999999999999999999


Q ss_pred             CeEEEEE------cCCccE---EEEeeeCc-----ceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          579 GSLRIWD------VILARQ---IDAIHVDV-----SITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       579 ~~I~vwd------~~~~~~---i~~~~~~~-----~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                      |++.|+.      +-...+   ++.+++|.     .|..+.|+|...+|.+++.|+ +|++|.
T Consensus       672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~-tirlfT  733 (733)
T KOG0650|consen  672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG-TIRLFT  733 (733)
T ss_pred             CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc-eEEeeC
Confidence            9999984      333333   34455544     288889999999999999999 799994

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=5.7e-22  Score=195.93  Aligned_cols=293  Identities=14%  Similarity=0.226  Sum_probs=228.9

Q ss_pred             EEeCCCeEEEEEeeCCeEEEEEeccC-CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc--eeeeeeecccccceEEE
Q 003579          198 VGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISL  274 (809)
Q Consensus       198 ~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~--~~~~~~~~~h~~~V~~l  274 (809)
                      +++....+++||....+....+..+. .-.+.++.|.......+++.+.|..+++|.-...  +....-. .....-.|+
T Consensus         7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv   85 (673)
T KOG4378|consen    7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCV   85 (673)
T ss_pred             eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHH
Confidence            33444579999998776665555432 2358999998776423344456788999974433  1211111 112233444


Q ss_pred             EEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecch
Q 003579          275 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQ  354 (809)
Q Consensus       275 ~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  354 (809)
                      +......++++||..+.|+|||+...    .+.+.+.+|...|+++.|.-...+|++++..|.|.+..+.++....++..
T Consensus        86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen   86 ACASQSLYEISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             hhhhcceeeeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence            44445579999999999999999854    67788899999999999999889999999999999999887765544422


Q ss_pred             hhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC
Q 003579          355 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA  434 (809)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~  434 (809)
                                                                                         +....++-+.+++
T Consensus       162 -------------------------------------------------------------------~sgqsvRll~ys~  174 (673)
T KOG4378|consen  162 -------------------------------------------------------------------DSGQSVRLLRYSP  174 (673)
T ss_pred             -------------------------------------------------------------------CCCCeEEEeeccc
Confidence                                                                               1124556788888


Q ss_pred             CCCEE-EEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeee
Q 003579          435 CGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW  512 (809)
Q Consensus       435 ~g~~l-~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~  512 (809)
                      ..+++ .+++.+|.|.+||.+.......+.       ..|..+..+++|+|.+ .++++.|.|..|.+||....+....+
T Consensus       175 skr~lL~~asd~G~VtlwDv~g~sp~~~~~-------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l  247 (673)
T KOG4378|consen  175 SKRFLLSIASDKGAVTLWDVQGMSPIFHAS-------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL  247 (673)
T ss_pred             ccceeeEeeccCCeEEEEeccCCCcccchh-------hhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence            77665 567888999999999988877775       4899999999999976 67889999999999999999999999


Q ss_pred             ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCC
Q 003579          513 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG  569 (809)
Q Consensus       513 ~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg  569 (809)
                      ....+...++|+++|.+|++|...|.|..||++.. .++..+..|...|++++|-|.-
T Consensus       248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999999999999999999999999999999864 5688999999999999997753

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5.6e-21  Score=178.49  Aligned_cols=287  Identities=15%  Similarity=0.252  Sum_probs=214.0

Q ss_pred             eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec--CCCEEEEEECCCCEE
Q 003579          262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFR  339 (809)
Q Consensus       262 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~i~  339 (809)
                      .+..+|..-|+++.|.+-|+.+++|+.|++|+|||++..++.+.+....+.|.+.|..+.|.+  -|+.+++++.|+++.
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            444589999999999999999999999999999999888899999999999999999999976  689999999999999


Q ss_pred             EEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeec
Q 003579          340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  419 (809)
Q Consensus       340 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  419 (809)
                      +|.-.......                                                  .-+.|...         ..
T Consensus        87 iWEE~~~~~~~--------------------------------------------------~~~~Wv~~---------tt  107 (361)
T KOG2445|consen   87 IWEEQEKSEEA--------------------------------------------------HGRRWVRR---------TT  107 (361)
T ss_pred             eeeeccccccc--------------------------------------------------ccceeEEE---------EE
Confidence            99853111000                                                  00111111         11


Q ss_pred             CCCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeCccc-----ccccCccccEEEEEEcCC---CCEE
Q 003579          420 CPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVVGVACDST---NTLM  489 (809)
Q Consensus       420 ~~~~~~~v~~v~~s~~--g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~~~~---~~~l  489 (809)
                      .....+.|+.+.|.|.  |-.+++++.||.+++|+...............     .....+.....|+.|+|.   .+++
T Consensus       108 l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~i  187 (361)
T KOG2445|consen  108 LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLI  187 (361)
T ss_pred             eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceE
Confidence            1234588999999984  78899999999999999765543333221110     012356677889999874   3677


Q ss_pred             EEEeCc-----CeEEEEECCCCc--e--eeee-ecCCCeEEEEEeeCC----CEEEEEeCCCeEEEEEcCCC--------
Q 003579          490 ISAGYH-----GDIKVWDFKGRD--L--KSRW-EVGCSLVKIVYHRVN----GLLATVADDLVIRLFDVVAL--------  547 (809)
Q Consensus       490 ~s~~~d-----g~i~iwd~~~~~--~--~~~~-~~~~~i~~~~~s~~~----~~la~~~~d~~I~v~d~~~~--------  547 (809)
                      +.|+.+     +.++||....+.  .  +.++ .+..+|+.++|.|+-    .+||+++.|| |+||.+...        
T Consensus       188 Avgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee  266 (361)
T KOG2445|consen  188 AVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE  266 (361)
T ss_pred             EEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence            777765     478999876543  2  2223 344899999999963    4899999999 999998731        


Q ss_pred             ------------eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC---ccEEEEeeeCcceEEEEEcC
Q 003579          548 ------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL---ARQIDAIHVDVSITALSLSP  608 (809)
Q Consensus       548 ------------~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~---~~~i~~~~~~~~v~~l~~sp  608 (809)
                                  +.+..+.+|.+.|..+.|.-.|..|++.|.||+||+|...-   -+++..+.....++...|++
T Consensus       267 ~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~  342 (361)
T KOG2445|consen  267 VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ  342 (361)
T ss_pred             ccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence                        34666889999999999999999999999999999997542   34555566555555555543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.8e-22  Score=210.35  Aligned_cols=282  Identities=17%  Similarity=0.250  Sum_probs=211.4

Q ss_pred             CCCcEEEEEeCC-eEEEEECCe-EEEEECCee-----EEE-Eccccc---cEEEEE---EeCCEEEEEeCCCcEEEEEcC
Q 003579           56 PKKIRALASYRD-YTFAAYGNH-IAVVKRAHQ-----VAT-WSRHSA---KVNLLL---LFGEHILSIDIDGNMFIWAFK  121 (809)
Q Consensus        56 ~~~I~~la~~~~-~~~~a~g~~-i~vw~~~~~-----~~~-~~~h~~---~V~~l~---~~g~~l~s~~~dg~i~vWd~~  121 (809)
                      +.++.+++..++ ...+..|.. +.+|.....     ... ..+...   ....|.   ++.++|++++..|.|.+||+.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            567778888887 334444444 666643211     111 111111   112222   368899999999999999998


Q ss_pred             CCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCC-CCEEEEEe
Q 003579          122 GIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGC  200 (809)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~la~g~  200 (809)
                      ...... .+..+.-|...+..+.||+... +.|++|+.||+|++||++..+-..++.+....|..+.|+|. +..++++.
T Consensus       119 k~~rnk-~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  119 KSIRNK-LLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             ccccch-hhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            732111 1334455666777788998775 88999999999999999999999999999999999999994 67899999


Q ss_pred             CCCeEEEEEeeCCe-EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC
Q 003579          201 SDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (809)
Q Consensus       201 ~dg~i~iwd~~~~~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~  279 (809)
                      ..|.+++||++... ....+..| .++|.|+.|+|++. +||||+.|+.|+|||..+.+...........+|.++.|-|.
T Consensus       197 dsG~lqlWDlRqp~r~~~k~~AH-~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~  274 (839)
T KOG0269|consen  197 DSGYLQLWDLRQPDRCEKKLTAH-NGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA  274 (839)
T ss_pred             CCceEEEeeccCchhHHHHhhcc-cCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence            99999999998654 45555554 99999999999887 99999999999999998765443333235678999999998


Q ss_pred             CC-EEEEEc--CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEee
Q 003579          280 EP-VLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       280 ~~-~l~s~s--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~  344 (809)
                      .+ .|++++  .|-.|+|||+..+-   -+...+..|...++.++|.. |...+.+++.||++..-.++
T Consensus       275 ~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  275 RSYHLATCSMVVDTSVHVWDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             ccchhhhhhccccceEEEEeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence            76 566654  48899999997653   45667789999999999976 66788899999987654443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.2e-21  Score=199.84  Aligned_cols=318  Identities=17%  Similarity=0.190  Sum_probs=217.8

Q ss_pred             EEEEEec--CCCCEEEEEcCCCcEEEEECCCceee------eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579          228 TALAFSS--DGQPLLASGASSGVISIWNLEKRRLQ------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (809)
Q Consensus       228 ~~l~fs~--dg~~~lasg~~dg~I~iwdl~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~  299 (809)
                      .+..|++  +.+++|+.+.++|.|.++|.+.....      ... .+|.+.|..+.|.|....|++++.|.++++||+..
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence            3456654  45679999999999999998765332      233 38999999999999888999999999999999887


Q ss_pred             CCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeE
Q 003579          300 TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (809)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (809)
                      .....  .....||...|.+++|.+ +...+++|+.||.+.+||++-..... +.     .............. .|.  
T Consensus       132 s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~-~e-----~~~~~~~~~~n~~p-tps--  200 (720)
T KOG0321|consen  132 SRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA-LE-----EFDNRIYGRHNTAP-TPS--  200 (720)
T ss_pred             ceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh-HH-----HHhhhhhccccCCC-CCC--
Confidence            63221  224679999999999999 56788899999999999997654111 00     00000000000000 000  


Q ss_pred             EeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEECC
Q 003579          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA---CTISACGNFAVLGTA-GGWIERFNLQ  454 (809)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~---v~~s~~g~~l~~g~~-~g~i~i~~~~  454 (809)
                       ..                -...++-|               ..+...+.+   +.+..|...|++++. |+.|++||+.
T Consensus       201 -kp----------------~~kr~~k~---------------kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  201 -KP----------------LKKRIRKW---------------KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             -ch----------------hhcccccc---------------ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence             00                00001111               111223333   455567777777766 9999999998


Q ss_pred             CCceeeeeeCcccccccCc---cccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCc--eeeeeecC---CCeEEEEEeeC
Q 003579          455 SGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---CSLVKIVYHRV  526 (809)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~---~~i~~~~~s~~  526 (809)
                      ..................|   ...++++..+..|.+|.+.+.|+.|++|++.+-.  ++..+.+.   .--..-..+|+
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence            7765544433333233334   4468889999989888888889999999987643  22222222   22234467899


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeE-EEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCc
Q 003579          527 NGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA  589 (809)
Q Consensus       527 ~~~la~~~~d~~I~v~d~~~~~~-~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~  589 (809)
                      +.++++|+.|...++|.+.+.+. ...+.||.-.|++++|.|.. .-+++++.|..+++|++..+
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999999999987654 56678999999999998732 34777899999999999654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=1.5e-20  Score=192.15  Aligned_cols=476  Identities=14%  Similarity=0.158  Sum_probs=294.2

Q ss_pred             CCcEEEEEeCC--eEEEEECCeEEEEEC--CeeEEEEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCcccccee
Q 003579           57 KKIRALASYRD--YTFAAYGNHIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV  130 (809)
Q Consensus        57 ~~I~~la~~~~--~~~~a~g~~i~vw~~--~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~  130 (809)
                      ..|..+||-||  ...+|.|+.+.+||.  |..+..++||++.|.++++  +|+.++||+.|..|.+|.-+-.       
T Consensus        13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-------   85 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-------   85 (1081)
T ss_pred             cchheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-------
Confidence            37899999999  456788999999996  5677889999999999998  7999999999999999975432       


Q ss_pred             eeEEcC-CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579          131 GHVKLD-DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (809)
Q Consensus       131 ~~~~~~-~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd  209 (809)
                      ..+++. ...+..+.|+|-+  ..+++++-+ ..-+|..... .+...+. ...|.+++|..||++++.|-.||+|.|-|
T Consensus        86 G~LkYSH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK-~V~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   86 GILKYSHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQK-SVSKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             ceeeeccCCeeeEeecCchH--HHhhhcchh-hccccChhhh-hHHhhhh-heeEEEeeecCCCcEEEEeccCceEEeec
Confidence            234443 4455556689988  678887654 4778986443 3322222 56789999999999999999999999997


Q ss_pred             eeCCeEEEEEe--ccCCCcEEEEEEecCCC----CEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE
Q 003579          210 VRYDEELVTFT--HSMRGAVTALAFSSDGQ----PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL  283 (809)
Q Consensus       210 ~~~~~~~~~~~--~~~~~~V~~l~fs~dg~----~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  283 (809)
                      - +++....+.  ++...+|.+++|+|...    .++++.....++.++.+. |+.+..-+ .-.-...|+.+.++|.++
T Consensus       161 k-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGEy~  237 (1081)
T KOG1538|consen  161 K-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGEYI  237 (1081)
T ss_pred             C-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCcEE
Confidence            4 455544444  34467999999998632    478888888899999885 44444333 344456899999999999


Q ss_pred             EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (809)
Q Consensus       284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  363 (809)
                      +.||.|+.+++|--+     ...+.+.......|..++..|+++.++.|..||+|..|++.....-.........++. -
T Consensus       238 LiGGsdk~L~~fTR~-----GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~s-M  311 (1081)
T KOG1538|consen  238 LLGGSDKQLSLFTRD-----GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDS-M  311 (1081)
T ss_pred             EEccCCCceEEEeec-----CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhh-h
Confidence            999999999999432     2455555567788999999999999999999999999988544321111000000000 0


Q ss_pred             ccchhhhhccCceeEEeecccc--ccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEE
Q 003579          364 LKMKEEELKLKPVIAFDCAEIR--ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (809)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~  441 (809)
                      -.+-...+....-..+.+...-  -.-+.+-++. .-...+.+|...+.............-.....+--+--+++.+++
T Consensus       312 tDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAV-QLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl  390 (1081)
T KOG1538|consen  312 TDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAV-QLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL  390 (1081)
T ss_pred             HHHHHHHHhhcceeeeeHHHHHHHHHhhhhhhee-cccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEE
Confidence            0000000000000000000000  0000000000 011233344333221110000000000011111112224555554


Q ss_pred             EeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEE--cC-CCCEEEEEeCcCeEEEEECCCCceeeeeecCCCe
Q 003579          442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL  518 (809)
Q Consensus       442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i  518 (809)
                      + .+..+..+|...-..+.-          ...+-|.-+.+  -| ...-++.|-.+|.|.-.=+++.-++-.......|
T Consensus       391 C-qekrLqClDF~Gvk~ReW----------~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~~~tAv  459 (1081)
T KOG1538|consen  391 C-QEKRLQCLDFSGVKEREW----------QMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLKQATAV  459 (1081)
T ss_pred             E-cccceeeecccchhhhhh----------hHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheeccccee
Confidence            3 455666666543322211          01111222221  12 2345777777776643334444444444555789


Q ss_pred             EEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCC
Q 003579          519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG  569 (809)
Q Consensus       519 ~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg  569 (809)
                      .|+..+...+.||+..+.++..++|+.+++.+.+-    -.+++++|....
T Consensus       460 rClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE----pg~nSV~wNT~~  506 (1081)
T KOG1538|consen  460 RCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE----PGANSVAWNTQC  506 (1081)
T ss_pred             EEeeccCCcceEEEEccCCeEEEEEccCCceEeec----CCCceEEeeccc
Confidence            99999999999999999999999999999877543    347788887644

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.1e-20  Score=176.67  Aligned_cols=254  Identities=15%  Similarity=0.210  Sum_probs=199.9

Q ss_pred             EccccccEEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579           89 WSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (809)
Q Consensus        89 ~~~h~~~V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw  166 (809)
                      -.+|.+-|+++.||  |+++++|+.|++|+|||..............+.|.+.+..+.+.++.|.+.+++++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            35799999999984  9999999999999999986665554556677888888889999888888999999999999999


Q ss_pred             eCCC---------CceEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEeeCCeEEEEEe------------ccC
Q 003579          167 NIST---------KKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEELVTFT------------HSM  223 (809)
Q Consensus       167 d~~~---------~~~~~~~~~~~~~I~~l~~sp~--~~~la~g~~dg~i~iwd~~~~~~~~~~~------------~~~  223 (809)
                      .=..         -....++....+.|+.+.|.|.  |-.+|+++.||.+|||+...--.+....            ..+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            7421         1234556777899999999995  6689999999999999876443322221            112


Q ss_pred             CCcEEEEEEecCC--CCEEEEEcCC-----CcEEEEECCCc----eeeeeeecccccceEEEEEecCC----CEEEEEcC
Q 003579          224 RGAVTALAFSSDG--QPLLASGASS-----GVISIWNLEKR----RLQSVIREAHDNAIISLHFFANE----PVLMSASA  288 (809)
Q Consensus       224 ~~~V~~l~fs~dg--~~~lasg~~d-----g~I~iwdl~~~----~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~  288 (809)
                      ..+..|+.|+|..  .+++|+|+.+     +.+.||....+    ..+..+. +|..+|+.++|.|+-    .+|++++.
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeec
Confidence            4578899999752  3588888865     57888876544    3445555 899999999999963    38999999


Q ss_pred             CCcEEEEEeeCC----------------CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579          289 DNSIKMWIFDTT----------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       289 d~~i~vw~~~~~----------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  344 (809)
                      || |+||.+...                .-....+..+.+|.++|..++|+-.|..|.+.|.||.+|+|...
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            99 999998731                01123455678999999999999999999999999999999753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=4.9e-23  Score=212.74  Aligned_cols=250  Identities=17%  Similarity=0.249  Sum_probs=216.7

Q ss_pred             CeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe---EEEEECCeeEEE--EccccccEEEEE
Q 003579           26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQVAT--WSRHSAKVNLLL  100 (809)
Q Consensus        26 ~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~~~~~--~~~h~~~V~~l~  100 (809)
                      ..+...+...-.+++||.+..      ..|...+.|+..-...+++++|+.   +-+|..++....  +.+|..+|.+|.
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~~------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~   77 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTREF------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT   77 (825)
T ss_pred             ccccceeeeeeccccccchhh------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence            345566666677888887652      236777788887666888888865   668888776444  899999999999


Q ss_pred             Ee--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc
Q 003579          101 LF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK  178 (809)
Q Consensus       101 ~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~  178 (809)
                      ++  ...|++|+.+|+|++||+.....    ++++..+......+.|||-+  .+.+.|+.|+.+.+||++...+.+.+.
T Consensus        78 f~~~E~LlaagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   78 FDTSERLLAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             cCcchhhhcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeec
Confidence            84  66788899999999999998887    77888888888888999999  778999999999999999899999999


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (809)
Q Consensus       179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~  258 (809)
                      +|...|.+++|+|+|+++++|+.|.+++|||+..|+.+..|..| .+.+.++.|+|..- ++++|+.|+++++||+++-.
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-cccccccccCchhh-hhccCCCCceeeeeccceeE
Confidence            99999999999999999999999999999999999999999876 89999999999876 99999999999999999999


Q ss_pred             eeeeeecccccceEEEEEecCCCEEEEEcCCC
Q 003579          259 LQSVIREAHDNAIISLHFFANEPVLMSASADN  290 (809)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~  290 (809)
                      .+.... ....+|.++.|.|++..+.+|..+.
T Consensus       230 ~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  230 VISSGK-PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             EeeccC-CccCCceeeeecCCceeeecCchhh
Confidence            888887 5688999999999999888876543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=3.4e-21  Score=190.54  Aligned_cols=271  Identities=17%  Similarity=0.248  Sum_probs=208.4

Q ss_pred             eEEEEECCeEEEEECCeeEEE--Eccccc--cEEEEEEe-CCEEEEEeC--CCcEEEEEcCCCccccceeeeEEcCCccc
Q 003579           68 YTFAAYGNHIAVVKRAHQVAT--WSRHSA--KVNLLLLF-GEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFT  140 (809)
Q Consensus        68 ~~~~a~g~~i~vw~~~~~~~~--~~~h~~--~V~~l~~~-g~~l~s~~~--dg~i~vWd~~~~~~~~~~~~~~~~~~~~~  140 (809)
                      ..++.+|+.+.+||.......  +..|+.  .+.++.|. .+.|++++.  |..|++|.-.........++.......+.
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C   84 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC   84 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHH
Confidence            344455667999986433211  333322  37778775 344666554  66789997665522112233333332221


Q ss_pred             cEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (809)
Q Consensus       141 ~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (809)
                        +.+....  .++++|+..+.|.|||++...+.+.+++|...|+++.+.-...+||+++..|.|.|+++.++.....|.
T Consensus        85 --v~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~  160 (673)
T KOG4378|consen   85 --VACASQS--LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT  160 (673)
T ss_pred             --Hhhhhcc--eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence              1122222  579999999999999999777777889999999999999999999999999999999999999999998


Q ss_pred             ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeC
Q 003579          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDT  299 (809)
Q Consensus       221 ~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~  299 (809)
                      .+....|.-+.|++..+++|.+++.+|.|.+||.............|..+...++|+|.+ .+|++.|.|..|.+||...
T Consensus       161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s  240 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS  240 (673)
T ss_pred             cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence            875667789999999998999999999999999999888888878999999999999965 4888999999999998875


Q ss_pred             CCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579          300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (809)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~  347 (809)
                      .....++     ....|...++|.++|.+|+.|...|.|..||++..+
T Consensus       241 ~~s~~~l-----~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  241 QASTDRL-----TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             cccccee-----eecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence            4322222     456789999999999999999999999999997654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.88  E-value=4.2e-21  Score=180.56  Aligned_cols=383  Identities=14%  Similarity=0.164  Sum_probs=265.9

Q ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEeeCCeEEEEEe
Q 003579          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFT  220 (809)
Q Consensus       142 ~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~  220 (809)
                      -|.|+|++  +++++.+.- .+.+-|..+.+..+.|.. -..|.-+.|..|.-++ .+.+.++.|.+|++...+-...+.
T Consensus        13 ~c~fSp~g--~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId   88 (447)
T KOG4497|consen   13 FCSFSPCG--NYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID   88 (447)
T ss_pred             ceeECCCC--Ceeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence            57899999  899999765 788899888777666554 4567888998887654 456788999999999998888888


Q ss_pred             ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       221 ~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~  300 (809)
                      .+ ..++.+++|||||+++|.+..-+-.|.+|.+.+.+....-.  ....+..++|.|||++.+.++.-.......+.. 
T Consensus        89 eg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~-  164 (447)
T KOG4497|consen   89 EG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS-  164 (447)
T ss_pred             cC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHh-
Confidence            87 78899999999998899998899999999999887655433  234568999999999888877532111111110 


Q ss_pred             CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (809)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (809)
                      -..+.+++.+.-..-..+.+.|+|||..|++         ||..-.-                                 
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Ley---------------------------------  202 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEY---------------------------------  202 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhh---------------------------------
Confidence            1123455555556667889999999987664         4421100                                 


Q ss_pred             eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 003579          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (809)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~  460 (809)
                                          .++.|                .-.-.+..++++|+++++++|+.|+.+++.|--+-+...
T Consensus       203 --------------------kv~aY----------------e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  203 --------------------KVYAY----------------ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             --------------------eeeee----------------eeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence                                00000                001568899999999999999999999998876655555


Q ss_pred             eeeCccccc-----------ccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC--------CCceeeeee-------c
Q 003579          461 SYLDMSERS-----------NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK--------GRDLKSRWE-------V  514 (809)
Q Consensus       461 ~~~~~~~~~-----------~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~--------~~~~~~~~~-------~  514 (809)
                      .+.......           ...-.-...++.|.|.+         -...+|..+        ....+..++       .
T Consensus       247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP  317 (447)
T KOG4497|consen  247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP  317 (447)
T ss_pred             hhccchhccCchhhhhhhhhcchhhhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence            442111000           00000111233343322         111222211        011111111       2


Q ss_pred             CCCeEEEEEeeCCCEEEEEeCC--CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEE
Q 003579          515 GCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (809)
Q Consensus       515 ~~~i~~~~~s~~~~~la~~~~d--~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i  592 (809)
                      ...+..++|++|+.++|+-.+.  ..+.+||++..++...+. ...+|....|.|....|+.+.....+++|...-...+
T Consensus       318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V  396 (447)
T KOG4497|consen  318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV  396 (447)
T ss_pred             ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence            2678889999999999987664  689999999877655554 5578999999998888887777778999997765555


Q ss_pred             EEeeeCcceEEEEEcCCCCeEEEEEeCC
Q 003579          593 DAIHVDVSITALSLSPNMDVLATAHVDQ  620 (809)
Q Consensus       593 ~~~~~~~~v~~l~~spdg~~lat~~~d~  620 (809)
                      ..-...-.|..+.|..+|++++..+.|.
T Consensus       397 ~vP~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  397 GVPKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             ecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence            5554455699999999999999999886

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7.9e-23  Score=211.23  Aligned_cols=254  Identities=15%  Similarity=0.317  Sum_probs=218.2

Q ss_pred             CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHH
Q 003579          281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR  360 (809)
Q Consensus       281 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  360 (809)
                      ..++....+-.+++|+...          ...|...+.++..-..++.+++|+.|..+-+|.+........         
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~----------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---------   65 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTRE----------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---------   65 (825)
T ss_pred             cccceeeeeeccccccchh----------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---------
Confidence            3445555556677885532          236888888888866888999999999999998654322111         


Q ss_pred             HhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEE
Q 003579          361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV  440 (809)
Q Consensus       361 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~  440 (809)
                                                                                 ..+|..+|.++.|++....++
T Consensus        66 -----------------------------------------------------------~~~hespIeSl~f~~~E~Lla   86 (825)
T KOG0267|consen   66 -----------------------------------------------------------LTGHESPIESLTFDTSERLLA   86 (825)
T ss_pred             -----------------------------------------------------------eeccCCcceeeecCcchhhhc
Confidence                                                                       125679999999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeE
Q 003579          441 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLV  519 (809)
Q Consensus       441 ~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~  519 (809)
                      .|+.+|.|++||+..++....+.        +|...+..+.|+|-+.+.++++.|+.+++||.+...+.+.+..+ ..+.
T Consensus        87 agsasgtiK~wDleeAk~vrtLt--------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~  158 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAKIVRTLT--------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD  158 (825)
T ss_pred             ccccCCceeeeehhhhhhhhhhh--------ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence            99999999999999998888765        99999999999999999999999999999999988888888766 6678


Q ss_pred             EEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeC-
Q 003579          520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-  598 (809)
Q Consensus       520 ~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~-  598 (809)
                      .+.|+|+|++++.+++|..++|||...|+....|.+|.+.|..+.|+|..-.+++||.|++|++||+++-+.+...... 
T Consensus       159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~  238 (825)
T KOG0267|consen  159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPET  238 (825)
T ss_pred             EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCcc
Confidence            8899999999999999999999999999999999999999999999999989999999999999999998888776544 


Q ss_pred             cceEEEEEcCCCCeEEEEEeCC
Q 003579          599 VSITALSLSPNMDVLATAHVDQ  620 (809)
Q Consensus       599 ~~v~~l~~spdg~~lat~~~d~  620 (809)
                      ..|.+++|+|+|..++++....
T Consensus       239 ~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  239 DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCceeeeecCCceeeecCchhh
Confidence            3599999999999988887664

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=6.8e-21  Score=179.47  Aligned_cols=323  Identities=17%  Similarity=0.240  Sum_probs=220.5

Q ss_pred             cCCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEEeeCCeEE---EEEec-cCCCcEEEEEEecC---CCCEEEEEcC
Q 003579          178 KGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEEL---VTFTH-SMRGAVTALAFSSD---GQPLLASGAS  245 (809)
Q Consensus       178 ~~~~~~I~~l~~sp-----~~~~la~g~~dg~i~iwd~~~~~~~---~~~~~-~~~~~V~~l~fs~d---g~~~lasg~~  245 (809)
                      ..|..+|..++|.+     +-+.+|+.+. ..+.+|+......+   +.... .+......++|+-|   +.+++|+|+.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            46788999999985     2356666665 57899988755433   33332 24567788888754   5679999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec
Q 003579          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (809)
Q Consensus       246 dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (809)
                      -|.|+|.|+.++++...+. +|...|+.+.+.|+.+ +++++|.|.+||+|++...... .+..-..||...|.++.|++
T Consensus       114 ~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-AVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             eeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-EEecccccccCcEEEEEEcC
Confidence            9999999999999999999 9999999999999774 8889999999999999876321 12223468999999999999


Q ss_pred             CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEE
Q 003579          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (809)
Q Consensus       325 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (809)
                      +|.+|+++|.|.+|++|++...+....+....      .........++|...                           
T Consensus       192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~------~~~~~~t~~pfpt~~---------------------------  238 (385)
T KOG1034|consen  192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSI------TYSPNKTTRPFPTPK---------------------------  238 (385)
T ss_pred             CCCeeeccCCcceEEEEecChhHHhhhhhhhc------ccCCCCccCcCCccc---------------------------
Confidence            99999999999999999987543322221100      000000000011000                           


Q ss_pred             EEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeeeeeCcccc-----cccCccccEE
Q 003579          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSER-----SNYAHNGEVV  478 (809)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~-~~~~~~~~~~~~~~~-----~~~~h~~~v~  478 (809)
                             .....+...+-|...|.|+.|-  |+++++-+-++.|..|.. +-++...........     ...-....|.
T Consensus       239 -------~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW  309 (385)
T KOG1034|consen  239 -------THFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW  309 (385)
T ss_pred             -------cccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence                   0001111222344555555554  588898888999999987 222221111100000     0111223344


Q ss_pred             E--EEEcCCCCEEEEEeCcCeEEEEECCCCceee--eeec---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579          479 G--VACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (809)
Q Consensus       479 ~--l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~  545 (809)
                      -  .+|++-++.||.+...|.|.+||++..++..  ++.+   ...|...+|+.|+.+|+..++|++|.-||..
T Consensus       310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            3  4567788999999999999999999776632  2222   3789999999999999999999999999864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=7e-20  Score=172.16  Aligned_cols=285  Identities=17%  Similarity=0.253  Sum_probs=213.3

Q ss_pred             ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC---------ceeEEeccCCCCCCeeEEEe-------cCCCEEEEEE
Q 003579          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---------PRLLRFRSGHSAPPLCIRFY-------ANGRHILSAG  333 (809)
Q Consensus       270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~---------~~~~~~~~~h~~~v~~i~~~-------~~~~~l~s~~  333 (809)
                      -..++.|+|||..|++.+.|+.+++|++......         .............|...+|.       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            4567899999999999999999999987543211         01111112233456677776       4677899999


Q ss_pred             CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeec
Q 003579          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (809)
Q Consensus       334 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  413 (809)
                      .+.-|++||..+++....+..-...                                                       
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~-------------------------------------------------------  155 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQ-------------------------------------------------------  155 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhH-------------------------------------------------------
Confidence            9999999999887765544321000                                                       


Q ss_pred             ceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEE
Q 003579          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS  491 (809)
Q Consensus       414 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s  491 (809)
                              ..-....+++|+|||..|++|. ...|++||+ +.|..-..+.... ....+..+-+.+++++|.. +.++.
T Consensus       156 --------de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~-~~k~gq~giisc~a~sP~~~~~~a~  225 (406)
T KOG2919|consen  156 --------DEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT-KGKFGQKGIISCFAFSPMDSKTLAV  225 (406)
T ss_pred             --------HhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh-cccccccceeeeeeccCCCCcceee
Confidence                    0014567899999999999886 467999999 5665544433111 0112457789999999966 58899


Q ss_pred             EeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCC-CeEEEEEecCCC-Ceee--EEE
Q 003579          492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA-LRMVRKFEGHTD-RITD--FCF  565 (809)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~-~~~~~~~~~h~~-~I~~--l~f  565 (809)
                      ++....+-||.-..+.++..+..+ +.|+.++|+++|+.|.+|.. |-.|..||++. +.++..+..|.+ .=..  +..
T Consensus       226 gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl  305 (406)
T KOG2919|consen  226 GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL  305 (406)
T ss_pred             ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence            999999999998888888877655 89999999999999999976 77999999975 456777777765 2222  455


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCC-ccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeC
Q 003579          566 SEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNMDVLATAHVD  619 (809)
Q Consensus       566 spdg~~l~s~s~D~~I~vwd~~~-~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d  619 (809)
                      .|+|++|++|+.||.|++||+++ |..+..+..++. ++.++++|--..+||++..
T Consensus       306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            78999999999999999999998 776766665554 9999999999999998754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=3.5e-20  Score=177.79  Aligned_cols=250  Identities=20%  Similarity=0.309  Sum_probs=190.8

Q ss_pred             EccccccEEEEEE----eCCEEEEEeCCCcEEEEEcCCCc------------cccceeeeEEcCCccccEEEEeCCCCCC
Q 003579           89 WSRHSAKVNLLLL----FGEHILSIDIDGNMFIWAFKGIE------------ENLAPVGHVKLDDKFTPTCIMHPDTYLN  152 (809)
Q Consensus        89 ~~~h~~~V~~l~~----~g~~l~s~~~dg~i~vWd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~  152 (809)
                      ..+|.+.+..+..    +..+.++-+..|.|.||++...-            ....|+.++..|........|+|..+ .
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g  225 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-G  225 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-c
Confidence            4567777776664    34566777889999999986421            12345677777888788889999665 6


Q ss_pred             EEEEEeCCCeEEEEeCCCCceE---EEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeCCe-EEEEEeccCCCcE
Q 003579          153 KVIVGSQEGSLQLWNISTKKKL---YEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAV  227 (809)
Q Consensus       153 ~l~~~~~dg~i~lwd~~~~~~~---~~~~~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~V  227 (809)
                      .+++|...+.|++|...+|.=.   ..|.+|...|-.++|||.. .++|+++.||+|+|||++.+. ....+...|.+.|
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            7999998999999999886422   3467899999999999964 689999999999999999883 2222224447899


Q ss_pred             EEEEEecCCCCEEEEEcCCCcEEEEECCC---ceeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCC-
Q 003579          228 TALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDG-  302 (809)
Q Consensus       228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~---~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~-  302 (809)
                      +.|+|+.+-. +||+|+.||+++|||++.   ++.+..+. -|..+|+++.|+|.. ..++++|.|++|.+||+..... 
T Consensus       306 NVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~  383 (440)
T KOG0302|consen  306 NVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE  383 (440)
T ss_pred             eeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence            9999999887 999999999999999976   46777887 899999999999954 4788889999999999865422 


Q ss_pred             --------------CceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEe
Q 003579          303 --------------DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       303 --------------~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~  343 (809)
                                    .++++.. ..-...+..+.|++ ...++++.+.|| +.+|..
T Consensus       384 ee~~~~a~~~L~dlPpQLLFV-HqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt  437 (440)
T KOG0302|consen  384 EEIDQEAAEGLQDLPPQLLFV-HQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT  437 (440)
T ss_pred             hhhccccccchhcCCceeEEE-ecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence                          1222222 22244688889998 345888888888 666643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=6e-20  Score=173.16  Aligned_cols=333  Identities=15%  Similarity=0.208  Sum_probs=228.4

Q ss_pred             EccccccEEEEEEe-------CCEEEEEeCCCcEEEEEcCCCccccceeeeEE--cCCccccEEEEeCCCC--CCEEEEE
Q 003579           89 WSRHSAKVNLLLLF-------GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK--LDDKFTPTCIMHPDTY--LNKVIVG  157 (809)
Q Consensus        89 ~~~h~~~V~~l~~~-------g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~--~~~l~~~  157 (809)
                      ...|+.+|..++|.       -+-+++++ .+.+.+++........ .+..+.  -+.....+|++.-+.+  ...+++|
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir-~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR-LLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee-eeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            45677888888873       23344444 5667777765543210 111111  1233445677665543  2578888


Q ss_pred             eCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeCCeEEEEEec--cCCCcEEEEEEec
Q 003579          158 SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFTH--SMRGAVTALAFSS  234 (809)
Q Consensus       158 ~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~V~~l~fs~  234 (809)
                      +.-|.|++.|+.++++...+.+|...|..+.+.|+. ++|++++.|..|++||++++.++..|.+  +|.+.|.++.|++
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence            899999999999999999999999999999999975 7999999999999999999999999873  5688999999999


Q ss_pred             CCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (809)
Q Consensus       235 dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (809)
                      +|. .+++++.|.+|++|++...+....+.       .+..|+|++...-.-  .-...+.++          .+..-|.
T Consensus       192 ~gd-~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~pfp--t~~~~fp~f----------st~diHr  251 (385)
T KOG1034|consen  192 DGD-RIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRPFP--TPKTHFPDF----------STTDIHR  251 (385)
T ss_pred             CCC-eeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCcCC--ccccccccc----------ccccccc
Confidence            999 89999999999999998766544443       124566654321100  001112221          2445799


Q ss_pred             CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc-eecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (809)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  393 (809)
                      ..|-|++|..  .++++-+-++.|..|....-.+. ....                    +|            +....+
T Consensus       252 nyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vk--------------------p~------------es~~Ti  297 (385)
T KOG1034|consen  252 NYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVK--------------------PP------------ESATTI  297 (385)
T ss_pred             chHHHHHHHh--hheeecccCceEEEEecchhhhhhhccC--------------------CC------------ccceee
Confidence            9999999984  68999999999999976311110 0000                    00            000011


Q ss_pred             EeecCCceEEEEEeeeeeecceeeecCCCCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccccc
Q 003579          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA--VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (809)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (809)
                      .        ..++++               ...  -...++.+.++.|+.|...|.|++||+........-..    .-.
T Consensus       298 ~--------~~~~~~---------------~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s  350 (385)
T KOG1034|consen  298 L--------GEFDYP---------------MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL----THS  350 (385)
T ss_pred             e--------eEeccC---------------ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE----Eec
Confidence            1        111111               122  23456788899999999999999999988766321110    001


Q ss_pred             CccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      .....|...+|+.|+..|+....|++|.-||..
T Consensus       351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            234578999999999999999999999999853

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.4e-20  Score=178.46  Aligned_cols=286  Identities=19%  Similarity=0.333  Sum_probs=208.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEEeeCCeEEEEEe--ccCCCcE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAV  227 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~V  227 (809)
                      +.++++...|.|++||..+++.+..|+++...+..+.|..  ..+.+.+++.||+|++||+++......+.  ++...+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5699999999999999999999999999999999999987  56789999999999999999877665554  3323477


Q ss_pred             EEEEEecCCCCEEEEEc----CCCcEEEEECCCcee-eeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCC
Q 003579          228 TALAFSSDGQPLLASGA----SSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD  301 (809)
Q Consensus       228 ~~l~fs~dg~~~lasg~----~dg~I~iwdl~~~~~-~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~  301 (809)
                      .|++....++ ++++|+    .+-.|.+||++..+. +..+...|...|+++.|+|..+ +|++||.||-|.++|+....
T Consensus       121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            7787776666 888876    456899999998866 8888889999999999999665 99999999999999987765


Q ss_pred             CCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579          302 GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (809)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (809)
                      ..-.++..+ .|...|.++.|..++ +.|.+-+..++..+|++..+.....+........                    
T Consensus       200 EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~--------------------  258 (376)
T KOG1188|consen  200 EEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSAD--------------------  258 (376)
T ss_pred             chhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhh--------------------
Confidence            444444443 677889999999876 5688888899999999988775544433211100                    


Q ss_pred             eccccccc-cceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC---C
Q 003579          381 CAEIRERD-WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQ---S  455 (809)
Q Consensus       381 ~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~g~~~g~i~i~~~~---~  455 (809)
                        ..|..+ -++++-+                                  .. ..++.+. +.|+..|...++-+.   +
T Consensus       259 --d~r~~~~~dY~I~~----------------------------------~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s  301 (376)
T KOG1188|consen  259 --DLRKEDNCDYVINE----------------------------------HS-PGDKDTCALAGTDSNKGTIFPLVDTSS  301 (376)
T ss_pred             --hHHhhhhhhheeec----------------------------------cc-CCCcceEEEeccccCceeEEEeeeccc
Confidence              000000 0011111                                  11 1122333 334434544444332   3


Q ss_pred             Cce---eeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579          456 GIS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (809)
Q Consensus       456 ~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  503 (809)
                      +..   ...+.       .+|..-|+++.|...+..+.|||.||.+.+|..
T Consensus       302 ~~~~~~~a~l~-------g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  302 GSLLTEPAILQ-------GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ccccCcccccc-------CCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            322   22222       257788999999999999999999999999985

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.2e-20  Score=181.21  Aligned_cols=241  Identities=17%  Similarity=0.315  Sum_probs=182.8

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCccccce--ee-------------e--EEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579          103 GEHILSIDIDGNMFIWAFKGIEENLAP--VG-------------H--VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL  165 (809)
Q Consensus       103 g~~l~s~~~dg~i~vWd~~~~~~~~~~--~~-------------~--~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l  165 (809)
                      |+++|.|+.|..|.|||++-.....+.  +.             .  -..|...+..+.+..... +.|++|+.|.+|.+
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-NVLASGSADKTVKL  270 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-eeEEecCCCceEEE
Confidence            789999999999999998753321111  00             0  011222222333333322 78999999999999


Q ss_pred             EeCCCCceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeCCe-EEEEEeccCCCcEEEEEEecCCCCEEEEE
Q 003579          166 WNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (809)
Q Consensus       166 wd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg  243 (809)
                      ||+.+|++..++..|...|.+++|+|. ..+|++|+.|++|.+.|.+... .-..++.  .+.|-.++|.|.....++++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEEe
Confidence            999999999999999999999999995 5799999999999999998422 2222332  57899999999998888999


Q ss_pred             cCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEE
Q 003579          244 ASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR  321 (809)
Q Consensus       244 ~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~  321 (809)
                      ..||+|+-+|+++. +++.++. +|.++|.++++++.-+ +|++++.|+.|++|+++...+.  ......-.-+...|.+
T Consensus       349 tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~  425 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFA  425 (463)
T ss_pred             cCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecc
Confidence            99999999999986 8899998 9999999999998765 7889999999999999876542  2222222223466777


Q ss_pred             EecCC-CEEEEEECCCCEEEEEeeecccc
Q 003579          322 FYANG-RHILSAGQDRAFRLFSVIQDQQS  349 (809)
Q Consensus       322 ~~~~~-~~l~s~~~dg~i~~wd~~~~~~~  349 (809)
                      +.|+- -.++.||..+.+++||+.+....
T Consensus       426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cCCCcceEEEecCccceEEEeecccChhH
Confidence            77854 35667777888999999776543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=3.9e-19  Score=172.50  Aligned_cols=328  Identities=20%  Similarity=0.231  Sum_probs=213.4

Q ss_pred             CCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCe---------EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEE
Q 003579          181 GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDE---------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (809)
Q Consensus       181 ~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~---------~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~  250 (809)
                      ..+|.++.|.++.. .+|+|+.|..|++|-+..+.         .+..+.. |...|+++.|+|+|. +||+|+.+|.|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~-H~~aVN~vRf~p~ge-lLASg~D~g~v~   90 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR-HTRAVNVVRFSPDGE-LLASGGDGGEVF   90 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccC-CcceeEEEEEcCCcC-eeeecCCCceEE
Confidence            46788888988766 99999999999999987432         1223334 478999999999999 999999999999


Q ss_pred             EEECC--------C--------ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579          251 IWNLE--------K--------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (809)
Q Consensus       251 iwdl~--------~--------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (809)
                      +|-..        +        -.....+. +|...|..++|+|++.++++++.|+++++||+..+    .++....+|.
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G----~l~~~~~dh~  165 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG----QLLAILDDHE  165 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeeeeccceEEEEEeccc----eeEeeccccc
Confidence            99765        2        12233344 89999999999999999999999999999999877    6888889999


Q ss_pred             CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEE
Q 003579          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (809)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  394 (809)
                      .-+..++|.|-++++++-+.|+..+.+++...+.........                                   +..
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~-----------------------------------m~~  210 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI-----------------------------------MPA  210 (434)
T ss_pred             cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE-----------------------------------eee
Confidence            999999999999999999999988888776554443322100                                   000


Q ss_pred             eecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeC----CCcE-----EEEECCCCceeeeeeCc
Q 003579          395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWI-----ERFNLQSGISRGSYLDM  465 (809)
Q Consensus       395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~----~g~i-----~i~~~~~~~~~~~~~~~  465 (809)
                      ........++..+          -.....+.....++|+|||.++++...    +|.+     ++|+-..-.       .
T Consensus       211 ~~~~~~e~~s~rL----------fhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~-------r  273 (434)
T KOG1009|consen  211 KAFNEREGKSTRL----------FHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK-------R  273 (434)
T ss_pred             cccCCCCcceeee----------eecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc-------C
Confidence            0001111111111          011111244566788899988887532    1111     111111000       0


Q ss_pred             ccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (809)
Q Consensus       466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~  545 (809)
                      +...+..-...+..+.++|              ..|.+..-..       .+  .+.--|-+-.+|+++ ...|++||.+
T Consensus       274 P~~~lp~~~k~~lavr~~p--------------Vy~elrp~~~-------~~--~~~~lpyrlvfaiAt-~~svyvydtq  329 (434)
T KOG1009|consen  274 PAARLPSPKKPALAVRFSP--------------VYYELRPLSS-------EK--FLFVLPYRLVFAIAT-KNSVYVYDTQ  329 (434)
T ss_pred             ceeecCCCCcceEEEEeee--------------eEEEeccccc-------cc--cccccccceEEEEee-cceEEEeccc
Confidence            0000011122222222222              1111110000       00  011123344455555 4589999999


Q ss_pred             CCeEEEEEec-CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccE
Q 003579          546 ALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ  591 (809)
Q Consensus       546 ~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~  591 (809)
                      +..++..... |-..|++++|++||..|+..|.||...+-.+...++
T Consensus       330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            9888776654 889999999999999999999999877766665544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.4e-19  Score=177.52  Aligned_cols=281  Identities=20%  Similarity=0.272  Sum_probs=202.0

Q ss_pred             EEEEcCCCCEEEEEeCC---Ce--EEEEEeeCCeEEEEEeccC----CCcEEEEEEecC-------CCCEEEEEcCCCcE
Q 003579          186 SCVSSPALDVVAVGCSD---GK--IHVHNVRYDEELVTFTHSM----RGAVTALAFSSD-------GQPLLASGASSGVI  249 (809)
Q Consensus       186 ~l~~sp~~~~la~g~~d---g~--i~iwd~~~~~~~~~~~~~~----~~~V~~l~fs~d-------g~~~lasg~~dg~I  249 (809)
                      .+..-|..+++++|-.+   ..  +++||-....    +..||    .....|+.|..-       |+ ++|.|+.+..|
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n----lYvHHD~ilpafPLC~ewld~~~~~~~~gN-yvAiGtmdp~I  204 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN----LYVHHDFILPAFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEI  204 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc----eeEecceeccCcchhhhhhhcCCCCCCCcc-eEEEeccCcee
Confidence            44555766666666433   23  4555533211    11122    234456666532       34 99999999999


Q ss_pred             EEEECCCcee--------------------eeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCCCceeEE
Q 003579          250 SIWNLEKRRL--------------------QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLR  308 (809)
Q Consensus       250 ~iwdl~~~~~--------------------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~  308 (809)
                      .|||+.-...                    ......+|+..|.++.|...- +.|++||.|.+|++||++..    .+..
T Consensus       205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g----~p~~  280 (463)
T KOG0270|consen  205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG----KPKS  280 (463)
T ss_pred             EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC----Ccce
Confidence            9999852200                    000112688899999998754 48999999999999999887    4566


Q ss_pred             eccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccccc
Q 003579          309 FRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (809)
Q Consensus       309 ~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  387 (809)
                      ++..|...|.++.|+| ....|++|+.|+++.+.|.+...+...                                    
T Consensus       281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~------------------------------------  324 (463)
T KOG0270|consen  281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK------------------------------------  324 (463)
T ss_pred             ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc------------------------------------
Confidence            6678999999999999 778999999999999999875322111                                    


Q ss_pred             ccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-ceeeeeeCc
Q 003579          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSG-ISRGSYLDM  465 (809)
Q Consensus       388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~~g~i~i~~~~~~-~~~~~~~~~  465 (809)
                                      -|.+                .+.|-.++|.|. .+.+++++.||.++-+|+++. +...+..  
T Consensus       325 ----------------~wk~----------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~--  370 (463)
T KOG0270|consen  325 ----------------EWKF----------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK--  370 (463)
T ss_pred             ----------------eEEe----------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE--
Confidence                            1111                177888999884 467888999999999999876 6666664  


Q ss_pred             ccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEeeCCC-EEEEEeCCCeEE
Q 003579          466 SERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNG-LLATVADDLVIR  540 (809)
Q Consensus       466 ~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~-~la~~~~d~~I~  540 (809)
                            +|.++|.++++++.. .++++++.|+.|++|++..........+.   +...|+++.|+-. .+|+|+..+.++
T Consensus       371 ------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~  444 (463)
T KOG0270|consen  371 ------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLR  444 (463)
T ss_pred             ------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEE
Confidence                  999999999999865 57889999999999999865543333322   4567777777654 677888888999


Q ss_pred             EEEcCCCeEEE
Q 003579          541 LFDVVALRMVR  551 (809)
Q Consensus       541 v~d~~~~~~~~  551 (809)
                      |||+.+...++
T Consensus       445 vwd~~~~~~V~  455 (463)
T KOG0270|consen  445 VWDIFTNSPVR  455 (463)
T ss_pred             EeecccChhHH
Confidence            99998876554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=6.5e-20  Score=167.69  Aligned_cols=308  Identities=16%  Similarity=0.233  Sum_probs=215.7

Q ss_pred             ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i  251 (809)
                      .+.+.+++|.+.|+++.|..++ +|.+|..-|.|++|++.+...+..+...+...|+.+.-.|++.  |.+-+.|+.+.+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~l   81 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLIL   81 (323)
T ss_pred             CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc--hhhcCCCceEEE
Confidence            4567788999999999998876 4899999999999999999999999866688999999999865  788899999999


Q ss_pred             EECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEE
Q 003579          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (809)
Q Consensus       252 wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  331 (809)
                      |++..+..+..    |.-.++++.|.+-.  +...+   ....|-..............  ..+..+.+..-++..    
T Consensus        82 w~ia~s~~i~i----~Si~~nslgFCrfS--l~~~~---k~~eqll~yp~rgsde~h~~--D~g~~tqv~i~dd~~----  146 (323)
T KOG0322|consen   82 WTIAYSAFISI----HSIVVNSLGFCRFS--LVKKP---KNSEQLLEYPSRGSDETHKQ--DGGDTTQVQIADDSE----  146 (323)
T ss_pred             EEccCcceEEE----eeeeccccccccce--eccCC---CcchhheecCCcccchhhhh--ccCccceeEccCchh----
Confidence            99987654432    44455666665432  22211   11112111110000000000  000011111111100    


Q ss_pred             EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (809)
Q Consensus       332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (809)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (323)
T KOG0322|consen  147 --------------------------------------------------------------------------------  146 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecceeeecCCCCCCCeEEEEEc-CCCC--EEEEEeCCCcEEEEECCCCceeeeeeCcccc--cccCccccEEEEEEcCCC
Q 003579          412 LGEHILRPCPENPTAVKACTIS-ACGN--FAVLGTAGGWIERFNLQSGISRGSYLDMSER--SNYAHNGEVVGVACDSTN  486 (809)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~v~~s-~~g~--~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~  486 (809)
                               ....+.+.+..+. .|+.  ++++|+++|.+.+||+.++.....++.....  ....|..+|.++.+.+.-
T Consensus       147 ---------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~  217 (323)
T KOG0322|consen  147 ---------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC  217 (323)
T ss_pred             ---------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence                     0011333333321 1332  5678899999999999988655554432221  234799999999999877


Q ss_pred             CEEEEEeCcCeEEEEECCCC--ce--eeeeec-CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCee
Q 003579          487 TLMISAGYHGDIKVWDFKGR--DL--KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT  561 (809)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~~--~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~  561 (809)
                      ..=++++.+..+..|+++..  .+  ...+.. +..+..+.+-||++.+|+++.|+.||||..++.+++..+.-|.+.|+
T Consensus       218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn  297 (323)
T KOG0322|consen  218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN  297 (323)
T ss_pred             cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence            77788888889999988643  22  222222 36788899999999999999999999999999999999999999999


Q ss_pred             eEEECCCCCEEEEEeCCCeEEEEEc
Q 003579          562 DFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       562 ~l~fspdg~~l~s~s~D~~I~vwd~  586 (809)
                      +++|+||...+|.+|+|++|.+|++
T Consensus       298 ~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999986

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=2.6e-19  Score=171.82  Aligned_cols=195  Identities=20%  Similarity=0.329  Sum_probs=162.3

Q ss_pred             CEEEEEeCCCeEEEEeCCC----------------CceEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeCCe
Q 003579          152 NKVIVGSQEGSLQLWNIST----------------KKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDE  214 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~----------------~~~~~~~~~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~~~  214 (809)
                      ...++-+..|.|+|||+..                .++++++.+|...=.+++|||-. ..|++|..-+.|++|...++.
T Consensus       166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~  245 (440)
T KOG0302|consen  166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS  245 (440)
T ss_pred             ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc
Confidence            3556667889999999842                35789999999999999999943 358888888999999998875


Q ss_pred             EE---EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCCCEEEEEcCCC
Q 003579          215 EL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADN  290 (809)
Q Consensus       215 ~~---~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~  290 (809)
                      -.   ..|.. |...|-.|+|||....++|+|+.||.|+|||++.+ +.......+|.+.|+.+.|+...++|++|+.||
T Consensus       246 W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG  324 (440)
T KOG0302|consen  246 WKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG  324 (440)
T ss_pred             eeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence            32   22334 58899999999998889999999999999999988 222233358999999999999999999999999


Q ss_pred             cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeeccc
Q 003579          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQ  348 (809)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~  348 (809)
                      +++|||++.-... +.+..+.-|..+|+++.|+| +...|+++|.|..|.+||+.-...
T Consensus       325 t~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  325 TLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             eEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            9999999876544 67778889999999999999 566888999999999999976543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=5.7e-19  Score=171.37  Aligned_cols=292  Identities=17%  Similarity=0.174  Sum_probs=214.0

Q ss_pred             ccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCC-----ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEE
Q 003579          268 DNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (809)
Q Consensus       268 ~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~w  341 (809)
                      ..+|.++.|.++.. .++||+.|..|++|.++.....     ...+..+..|...|++++|+|+|..|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45789999998776 9999999999999988765432     34566788999999999999999999999999999999


Q ss_pred             EeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCC
Q 003579          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (809)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (809)
                      -...-...   .......                                        ..-..         ..+.....
T Consensus        93 k~~~~~~~---~~d~e~~----------------------------------------~~ke~---------w~v~k~lr  120 (434)
T KOG1009|consen   93 KQGDVRIF---DADTEAD----------------------------------------LNKEK---------WVVKKVLR  120 (434)
T ss_pred             EecCcCCc---cccchhh----------------------------------------hCccc---------eEEEEEec
Confidence            86531100   0000000                                        00000         11122233


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579          422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (809)
Q Consensus       422 ~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw  501 (809)
                      +|...+..++|+|+++++++|+.|..+++||+..|.....+.        .|...+.+++|+|.++++++-+.|...+.+
T Consensus       121 ~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~--------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~  192 (434)
T KOG1009|consen  121 GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD--------DHEHYVQGVAWDPLNQYVASKSSDRHPEGF  192 (434)
T ss_pred             ccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc--------ccccccceeecchhhhhhhhhccCccccee
Confidence            577899999999999999999999999999999999998876        899999999999999999999999877777


Q ss_pred             ECCCCceeeeee--------------------c----CCCeEEEEEeeCCCEEEEEeC----CC-----eEEEEEcCC-C
Q 003579          502 DFKGRDLKSRWE--------------------V----GCSLVKIVYHRVNGLLATVAD----DL-----VIRLFDVVA-L  547 (809)
Q Consensus       502 d~~~~~~~~~~~--------------------~----~~~i~~~~~s~~~~~la~~~~----d~-----~I~v~d~~~-~  547 (809)
                      .+...+......                    +    ..-...++|+|+|.++++...    .+     ..++|+-.. .
T Consensus       193 ~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~  272 (434)
T KOG1009|consen  193 SAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK  272 (434)
T ss_pred             eeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence            766543332221                    1    123445789999999987643    22     335554432 2


Q ss_pred             eEEEEEecCCCCeeeEEECCC------------------CCEEEEEeCCCeEEEEEcCCccEEEEee--eCcceEEEEEc
Q 003579          548 RMVRKFEGHTDRITDFCFSED------------------GKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLS  607 (809)
Q Consensus       548 ~~~~~~~~h~~~I~~l~fspd------------------g~~l~s~s~D~~I~vwd~~~~~~i~~~~--~~~~v~~l~~s  607 (809)
                      ++...+.+...+...+.|+|-                  +-.++.++. ..|.|||.++-.++....  +-.+++.++|+
T Consensus       273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws  351 (434)
T KOG1009|consen  273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWS  351 (434)
T ss_pred             CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeec
Confidence            445566666666677776651                  123445554 469999999887776653  34569999999


Q ss_pred             CCCCeEEEEEeCC
Q 003579          608 PNMDVLATAHVDQ  620 (809)
Q Consensus       608 pdg~~lat~~~d~  620 (809)
                      +||.+|+..+.||
T Consensus       352 ~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  352 DDGSVLLVSSTDG  364 (434)
T ss_pred             CCCcEEEEeccCC
Confidence            9999999999998

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=2e-18  Score=172.65  Aligned_cols=437  Identities=18%  Similarity=0.201  Sum_probs=271.8

Q ss_pred             ccccccEEEEEEeC-CEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC-------CCCCEEEEEeCCC
Q 003579           90 SRHSAKVNLLLLFG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD-------TYLNKVIVGSQEG  161 (809)
Q Consensus        90 ~~h~~~V~~l~~~g-~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~l~~~~~dg  161 (809)
                      ..|...|.++.+.+ .-++.++.|..+.+|.-.+.+.    ...+.....++.+..+ +.       +....+++++.||
T Consensus        11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s----~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DG   85 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS----VEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDG   85 (737)
T ss_pred             cccceeEEeecccccceEEEeccCceEEEeecccchh----hhhhhCCcccCCcccc-ccccccCCCCCcceEEEEcCCc
Confidence            35777777777643 4455566677777765544333    2223333333333221 21       1125689999999


Q ss_pred             eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (809)
Q Consensus       162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la  241 (809)
                      .+.+.+ +.++.......|.++|.|-.|+|+|.-|++++.||.|++|. ++|-...++.+. ..+|.|++|.|+...++.
T Consensus        86 kf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~-~~~v~c~~W~p~S~~vl~  162 (737)
T KOG1524|consen   86 RFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQN-EESIRCARWAPNSNSIVF  162 (737)
T ss_pred             eEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhc-CceeEEEEECCCCCceEE
Confidence            999998 68888899999999999999999999999999999999998 445444444443 678999999999986776


Q ss_pred             EEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEE
Q 003579          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR  321 (809)
Q Consensus       242 sg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~  321 (809)
                      +.  .+.+.|=-+.....+-..+ +|++-|.++.|++...++++||.|-..++||-..     +.+.....|..+|++++
T Consensus       163 c~--g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~ey~ITSva  234 (737)
T KOG1524|consen  163 CQ--GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAAEEYAITSVA  234 (737)
T ss_pred             ec--CCeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCChhccceeeee
Confidence            54  4678887777776666666 8999999999999999999999999999996432     56777778999999999


Q ss_pred             EecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCce
Q 003579          322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (809)
Q Consensus       322 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  401 (809)
                      |.|+ +.++.++.. ++|+=                                                            
T Consensus       235 ~npd-~~~~v~S~n-t~R~~------------------------------------------------------------  252 (737)
T KOG1524|consen  235 FNPE-KDYLLWSYN-TARFS------------------------------------------------------------  252 (737)
T ss_pred             eccc-cceeeeeee-eeeec------------------------------------------------------------
Confidence            9999 555555532 33310                                                            


Q ss_pred             EEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeeeeCcccc--------
Q 003579          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-----RGSYLDMSER--------  468 (809)
Q Consensus       402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~-----~~~~~~~~~~--------  468 (809)
                                         ....+.|..++||+||..+++|+..|.+.+-..-..+.     ..........        
T Consensus       253 -------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~  313 (737)
T KOG1524|consen  253 -------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATG  313 (737)
T ss_pred             -------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhh
Confidence                               01237899999999999999999999876533221111     1110000000        


Q ss_pred             --cccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee-------------------cCCCeEE------E
Q 003579          469 --SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------------------VGCSLVK------I  521 (809)
Q Consensus       469 --~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~i~~------~  521 (809)
                        ..-.....|...+..  -.+|+++.. ..|++|.-+.....-.++                   ....++-      .
T Consensus       314 v~d~LE~p~rv~k~sL~--Y~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~  390 (737)
T KOG1524|consen  314 VQDILEFPQRVVKFSLG--YGHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRL  390 (737)
T ss_pred             HHHHhhCccceeeeeec--eeEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCce
Confidence              001222334444432  123333322 345555432211000000                   0011110      0


Q ss_pred             EEee-----------------CCCEEEEE--eCCCeEEEEEc-CCCeEEE--EEecCCCCeeeEEECC----CCCEEEEE
Q 003579          522 VYHR-----------------VNGLLATV--ADDLVIRLFDV-VALRMVR--KFEGHTDRITDFCFSE----DGKWLLSS  575 (809)
Q Consensus       522 ~~s~-----------------~~~~la~~--~~d~~I~v~d~-~~~~~~~--~~~~h~~~I~~l~fsp----dg~~l~s~  575 (809)
                      .++|                 ....|+.-  .+...+++||. .+++...  .+-.|...|..++...    +.|.++--
T Consensus       391 ~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFi  470 (737)
T KOG1524|consen  391 HLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFI  470 (737)
T ss_pred             ecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEE
Confidence            1111                 12223332  23345677776 5555432  1223666677776644    44667777


Q ss_pred             eCCCeEEEEEcCC-ccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          576 GMDGSLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       576 s~D~~I~vwd~~~-~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                      ...+.+.|=.+.+ |+.-..++....|..++|+..-+.| .+-.|+ .+.+|-.
T Consensus       471 Dknrdl~ItsvKrfgkee~I~KiGTmVhtLawndttNiL-cglqDt-~fsVWy~  522 (737)
T KOG1524|consen  471 DKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTNIL-CGLQDT-CFSVWYY  522 (737)
T ss_pred             ecCCcEEEEeehhcCchhhhhhhhhhhhhhhhcccccee-eeeccc-eEEEEEc
Confidence            7777777766654 3333444556668999998776655 444566 4889954

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.5e-20  Score=201.63  Aligned_cols=288  Identities=18%  Similarity=0.305  Sum_probs=221.1

Q ss_pred             EEEEEEecCCCCEEEEEc----------CCCcEEEEECCCc--e----eeeeeecccccceEEEEEecCCCE----EEEE
Q 003579          227 VTALAFSSDGQPLLASGA----------SSGVISIWNLEKR--R----LQSVIREAHDNAIISLHFFANEPV----LMSA  286 (809)
Q Consensus       227 V~~l~fs~dg~~~lasg~----------~dg~I~iwdl~~~--~----~~~~~~~~h~~~V~~l~~~~~~~~----l~s~  286 (809)
                      -..++|+|++..+||+|.          .+.++.||.+...  .    .+..+.  -....+.++|.+.+..    ++.|
T Consensus         9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen    9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeecc
Confidence            346789999876777664          2445666654332  2    333332  3456889999987764    8888


Q ss_pred             cCCCcEEEEEeeC--CCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579          287 SADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (809)
Q Consensus       287 s~d~~i~vw~~~~--~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  363 (809)
                      ..||.|.+|+.+.  .+....++.....|.++|..+.|++ .++.|++|+.||.|.+||+.+........          
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~----------  156 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG----------  156 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----------
Confidence            9999999998876  3555567788889999999999999 45599999999999999986533211110          


Q ss_pred             ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (809)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~  443 (809)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (1049)
T KOG0307|consen  157 --------------------------------------------------------------------------------  156 (1049)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeeeecC---CCeE
Q 003579          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLV  519 (809)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~  519 (809)
                                                .......|.+++|+..- ..|++++.+|.+.|||++..+.+-.+...   ..+.
T Consensus       157 --------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S  210 (1049)
T KOG0307|consen  157 --------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS  210 (1049)
T ss_pred             --------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence                                      01344677888887643 56788889999999999988777666554   3478


Q ss_pred             EEEEeeCCC-EEEEEeCC---CeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCccEEE
Q 003579          520 KIVYHRVNG-LLATVADD---LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQID  593 (809)
Q Consensus       520 ~~~~s~~~~-~la~~~~d---~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~  593 (809)
                      .++|||++. .++++++|   -.|.+||++.- ..++++++|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+.
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence            999999765 55555554   47999998753 5688899999999999999966 899999999999999999999999


Q ss_pred             EeeeCcc-eEEEEEcCCCC-eEEEEEeCCCeEEEeecCcccC
Q 003579          594 AIHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNRCMFS  633 (809)
Q Consensus       594 ~~~~~~~-v~~l~~spdg~-~lat~~~d~~~i~lW~~~~~~~  633 (809)
                      .+..... +..+.|+|... .++.++.||. |.|+.+...-.
T Consensus       291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgk-I~I~sl~~~~~  331 (1049)
T KOG0307|consen  291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGK-ISIYSLQGTDT  331 (1049)
T ss_pred             ecCCCCcceeeeeecCCCcchhhhheeccc-eeeeeeecCCc
Confidence            9976544 99999999766 8888899995 99999865543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=4.9e-18  Score=159.86  Aligned_cols=280  Identities=17%  Similarity=0.273  Sum_probs=206.9

Q ss_pred             CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-------ce-----EEEEc-CCCCCEEEEEEc-------CCCCEE
Q 003579          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-------KK-----LYEFK-GWGSSISSCVSS-------PALDVV  196 (809)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~-------~~-----~~~~~-~~~~~I~~l~~s-------p~~~~l  196 (809)
                      ..+...|.++|++  ..|++-+.|+.+.+|++...       ..     ..+++ .....|...+|-       |+..++
T Consensus        49 ~nf~kgckWSPDG--SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~  126 (406)
T KOG2919|consen   49 LNFLKGCKWSPDG--SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF  126 (406)
T ss_pred             hhhhccceeCCCC--ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence            4566788999999  89999999999999998421       11     11111 124556666664       677899


Q ss_pred             EEEeCCCeEEEEEeeCCeEEEEEecc-CC---CcEEEEEEecCCCCEEEEEcCCCcEEEEEC-CCceeee---eee---c
Q 003579          197 AVGCSDGKIHVHNVRYDEELVTFTHS-MR---GAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQS---VIR---E  265 (809)
Q Consensus       197 a~g~~dg~i~iwd~~~~~~~~~~~~~-~~---~~V~~l~fs~dg~~~lasg~~dg~I~iwdl-~~~~~~~---~~~---~  265 (809)
                      |+.+.+.-|++||.-+|+....+..- |.   ....+++|+|||. .|++| ....|+++|+ +.|+...   ++.   .
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEeec-ccceEEEeeccCCCCCCcchhhhhcccc
Confidence            99999999999999999988777642 12   2567999999999 66555 5789999999 4453211   111   1


Q ss_pred             ccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC-CCCEEEEEe
Q 003579          266 AHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSV  343 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~  343 (809)
                      +..+-|.+++|+|-.. .++.++.-.++-++.-+..    +++..+.+|.+.|+.++|.++|+.|++|+. |-.|..||+
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi  280 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI  280 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence            3467899999999665 8999999999999866554    567778899999999999999999999885 678999999


Q ss_pred             eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (809)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (809)
                      +......---.++                                                                .+.
T Consensus       281 R~~~~pv~~L~rh----------------------------------------------------------------v~~  296 (406)
T KOG2919|consen  281 RYSRDPVYALERH----------------------------------------------------------------VGD  296 (406)
T ss_pred             hhccchhhhhhhh----------------------------------------------------------------ccC
Confidence            7654321110000                                                                011


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg  496 (809)
                      ...-.-..+.|+|++|+.|+.+|.|++||++. |.....+.        .|...+++++++|--.++++++...
T Consensus       297 TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  297 TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cccccccceecCcccceeeeccCce
Confidence            12233456788999999999999999999998 65455544        7889999999999988888887643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.5e-18  Score=165.36  Aligned_cols=295  Identities=15%  Similarity=0.182  Sum_probs=209.9

Q ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEee------CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (809)
Q Consensus       176 ~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~------~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I  249 (809)
                      .+.+|.+.|.++.||.++++||+|+.|..+++|++.      +.+++.....+|...|.|++|..... .+.+|..+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCccee
Confidence            356899999999999999999999999999999985      45777777788889999999998777 89999999999


Q ss_pred             EEEECCCceeeeeeecccc---cceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-C
Q 003579          250 SIWNLEKRRLQSVIREAHD---NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N  325 (809)
Q Consensus       250 ~iwdl~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~  325 (809)
                      ...|+++.+.+....  |.   +.|..+..+|-.+.|++.+.++.|.+||......... +............+.|+| .
T Consensus       130 I~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~-~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  130 IKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS-LVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             Eeeecccceeeeeec--ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc-eeeecCCCccceeeeecCCC
Confidence            999999998888775  54   4899999999999999999999999998876542222 222334445678889999 5


Q ss_pred             CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (809)
Q Consensus       326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (809)
                      ..+|++.+..+-+.+||.+..+...-...       .                                           
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~-------~-------------------------------------------  236 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRS-------M-------------------------------------------  236 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhh-------c-------------------------------------------
Confidence            56788888888899999875432110000       0                                           


Q ss_pred             EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (809)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (809)
                                 +.........-.++.|+|.|+.+..                                            
T Consensus       237 -----------~~~L~~~~~~~M~~~~~~~G~Q~ms--------------------------------------------  261 (609)
T KOG4227|consen  237 -----------FKGLPQENTEWMGSLWSPSGNQFMS--------------------------------------------  261 (609)
T ss_pred             -----------cccCcccchhhhheeeCCCCCeehh--------------------------------------------
Confidence                       0000000011133445555554433                                            


Q ss_pred             CCEEEEEeCcCeEEEEECCCCce-eeeeec-------CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC----------
Q 003579          486 NTLMISAGYHGDIKVWDFKGRDL-KSRWEV-------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL----------  547 (809)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-------~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~----------  547 (809)
                            --....-.+||+.+..+ +....+       ...+.+++|.-|-. +++|+++-.|++|.+...          
T Consensus       262 ------iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG  334 (609)
T KOG4227|consen  262 ------IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIG  334 (609)
T ss_pred             ------hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccC
Confidence                  22222222333333111 111111       13455677765444 999999999999987421          


Q ss_pred             -------------eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579          548 -------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       548 -------------~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~  586 (809)
                                   +.+..++||..-++.+.|+|...+|++.+-.+.+++|.-
T Consensus       335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence                         234568999999999999999999999999999999963

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=7.4e-18  Score=156.39  Aligned_cols=289  Identities=17%  Similarity=0.299  Sum_probs=209.1

Q ss_pred             CeEEEEEeccCCCcEEEEEEe--cCCCCEEEEEc----CCCcEEEEEC--CCceeeeeeecccccceEEEEEecCCC---
Q 003579          213 DEELVTFTHSMRGAVTALAFS--SDGQPLLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEP---  281 (809)
Q Consensus       213 ~~~~~~~~~~~~~~V~~l~fs--~dg~~~lasg~----~dg~I~iwdl--~~~~~~~~~~~~h~~~V~~l~~~~~~~---  281 (809)
                      .+.+..+..  .-++.++.|+  ++.+..||.|+    ..+.|.|..+  ++++.+..-...|.-+++.+.|.|+..   
T Consensus        35 ~~eiy~Y~a--p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~  112 (364)
T KOG0290|consen   35 RKEIYTYNA--PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY  112 (364)
T ss_pred             cceEEEecC--CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence            445555555  3578889998  55666899988    3456666544  445555444346999999999999873   


Q ss_pred             --EEEEEcCCCcEEEEEeeCCCCCceeEEe-----ccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecc
Q 003579          282 --VLMSASADNSIKMWIFDTTDGDPRLLRF-----RSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELS  353 (809)
Q Consensus       282 --~l~s~s~d~~i~vw~~~~~~~~~~~~~~-----~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  353 (809)
                        +|+|++  ..+|+|.+...+...++...     -..+.+++++..|+. +-+++.+++-|-+..+||+.++..     
T Consensus       113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-----  185 (364)
T KOG0290|consen  113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-----  185 (364)
T ss_pred             cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----
Confidence              566554  47999988754433222222     234567888888887 777888888898888998865410     


Q ss_pred             hhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc
Q 003579          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  433 (809)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s  433 (809)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (364)
T KOG0290|consen  186 --------------------------------------------------------------------------------  185 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeee
Q 003579          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW  512 (809)
Q Consensus       434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~  512 (809)
                                            +.....+        .+|..+|..++|...+ +.++++|.||.+|++|++..+.-..+
T Consensus       186 ----------------------~~vkTQL--------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII  235 (364)
T KOG0290|consen  186 ----------------------GTVKTQL--------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII  235 (364)
T ss_pred             ----------------------cceeeEE--------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence                                  0011111        3899999999999865 68999999999999999876544333


Q ss_pred             e---c-CCCeEEEEEeeCC-CEEEEEe-CCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEE
Q 003579          513 E---V-GCSLVKIVYHRVN-GLLATVA-DDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIW  584 (809)
Q Consensus       513 ~---~-~~~i~~~~~s~~~-~~la~~~-~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vw  584 (809)
                      -   . ..+...++|++.. +++|+-. +...|.|.|++.. ..+.++++|.+.|+.++|.|.. ..|+||+.|..+.+|
T Consensus       236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW  315 (364)
T KOG0290|consen  236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW  315 (364)
T ss_pred             ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence            2   2 3678889998844 5666644 4568999999864 6789999999999999999954 689999999999999


Q ss_pred             EcCCcc------EEEEeeeCcceEEEEEcC-CCCeEEEEEeCC
Q 003579          585 DVILAR------QIDAIHVDVSITALSLSP-NMDVLATAHVDQ  620 (809)
Q Consensus       585 d~~~~~------~i~~~~~~~~v~~l~~sp-dg~~lat~~~d~  620 (809)
                      |+.+.-      ++-.+.....|..+.|++ .+++++.+....
T Consensus       316 Dl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  316 DLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             ecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence            997632      344455566799999996 677888887654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=7.5e-17  Score=169.80  Aligned_cols=272  Identities=12%  Similarity=0.138  Sum_probs=182.5

Q ss_pred             EEEEEcCCCcEEEEECCC-ce--eeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579          239 LLASGASSGVISIWNLEK-RR--LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (809)
Q Consensus       239 ~lasg~~dg~I~iwdl~~-~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (809)
                      +.++...++.|.+||+.+ ++  .+..+.  +.+....++++|++++|++++ .++.|.+|+++ .++........ ...
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~-~~~   79 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFAAES-PLP   79 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEeeee-cCC
Confidence            344556789999999964 33  344443  446678899999999887654 58899999987 33322223222 233


Q ss_pred             CCCeeEEEecCCCEEEEEEC-CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579          315 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (809)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  393 (809)
                      ..+..+.++|+++++++++. ++.+.+|++.........                                         
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~-----------------------------------------  118 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP-----------------------------------------  118 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc-----------------------------------------
Confidence            45788999999998888764 778888887432110000                                         


Q ss_pred             EeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCc
Q 003579          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH  473 (809)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h  473 (809)
                                                                                       ....         .+
T Consensus       119 -----------------------------------------------------------------~~~~---------~~  124 (330)
T PRK11028        119 -----------------------------------------------------------------IQII---------EG  124 (330)
T ss_pred             -----------------------------------------------------------------eeec---------cC
Confidence                                                                             0000         11


Q ss_pred             cccEEEEEEcCCCCEEEEEe-CcCeEEEEECCCCceee-------eeecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEc
Q 003579          474 NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS-------RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDV  544 (809)
Q Consensus       474 ~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~-------~~~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~  544 (809)
                      .....+++++|+++++++++ .++.|.+||+.+...+.       ..........++|+|+++++++++. ++.|.+||+
T Consensus       125 ~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~  204 (330)
T PRK11028        125 LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL  204 (330)
T ss_pred             CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence            12245677888887775544 56889999987632221       1223456678999999999988876 899999999


Q ss_pred             CC--C--eEEEEEecCC------CCeeeEEECCCCCEEEEEe-CCCeEEEEEcCCcc----EEEEeeeCcceEEEEEcCC
Q 003579          545 VA--L--RMVRKFEGHT------DRITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR----QIDAIHVDVSITALSLSPN  609 (809)
Q Consensus       545 ~~--~--~~~~~~~~h~------~~I~~l~fspdg~~l~s~s-~D~~I~vwd~~~~~----~i~~~~~~~~v~~l~~spd  609 (809)
                      +.  +  +.+..+..+.      .....+.|+|||++|+++. .+++|.+|++....    .+...........++++||
T Consensus       205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d  284 (330)
T PRK11028        205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS  284 (330)
T ss_pred             eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence            73  3  3344443221      1234689999999999885 47899999996432    2333333334678999999


Q ss_pred             CCeEEEEEeCCCeEEEeecC
Q 003579          610 MDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       610 g~~lat~~~d~~~i~lW~~~  629 (809)
                      |++|++++...+.|.+|++.
T Consensus       285 g~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        285 GKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCEEEEEEccCCcEEEEEEc
Confidence            99999998755579999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.3e-18  Score=163.53  Aligned_cols=276  Identities=17%  Similarity=0.264  Sum_probs=194.0

Q ss_pred             CEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-CCCEEEEEcCCCcEEEEECCCceeeeeeec-ccc-cc
Q 003579          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIRE-AHD-NA  270 (809)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-g~~~lasg~~dg~I~iwdl~~~~~~~~~~~-~h~-~~  270 (809)
                      ..+|++..+|.|++||..+++.+..++.+ ...+..+.|..+ +.+.+.+|+.||+|++||++.......+.. +|. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~-~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP-PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCC-CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            57999999999999999999999999987 778889999875 566889999999999999998866555542 343 35


Q ss_pred             eEEEEEecCCCEEEEEc----CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeee
Q 003579          271 IISLHFFANEPVLMSAS----ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       271 V~~l~~~~~~~~l~s~s----~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~  345 (809)
                      ..+++-.-.++++++|.    .|-.|.+||++.....  +-.....|...|++++|+| +.+.|++|+.||-+.+||+..
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            66666655677777775    3678999999877532  2234468999999999999 678999999999999999865


Q ss_pred             cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (809)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (809)
                      +.....+..                                                                       
T Consensus       198 d~EeDaL~~-----------------------------------------------------------------------  206 (376)
T KOG1188|consen  198 DNEEDALLH-----------------------------------------------------------------------  206 (376)
T ss_pred             CcchhhHHH-----------------------------------------------------------------------
Confidence            522111100                                                                       


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECC
Q 003579          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~  504 (809)
                                                                  ...|...|..+.|..++ +.+.+-+..++..+|+++
T Consensus       207 --------------------------------------------viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  207 --------------------------------------------VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             --------------------------------------------hhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence                                                        01455566677776655 346666667777777777


Q ss_pred             CCceeeeeecC-------------CCeEEEEEeeCCCEEEEEeC-CCeEEEEEc---CC---CeEEEEEec-CCCCeeeE
Q 003579          505 GRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVAD-DLVIRLFDV---VA---LRMVRKFEG-HTDRITDF  563 (809)
Q Consensus       505 ~~~~~~~~~~~-------------~~i~~~~~s~~~~~la~~~~-d~~I~v~d~---~~---~~~~~~~~~-h~~~I~~l  563 (809)
                      .+.....++..             ..+.......+....+.++. -+...++-+   .+   .+.+..+.| |..-|.++
T Consensus       243 ~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i  322 (376)
T KOG1188|consen  243 DGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI  322 (376)
T ss_pred             CCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence            66544333221             11111111223445555544 444444433   22   345666776 67788999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcC
Q 003579          564 CFSEDGKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       564 ~fspdg~~l~s~s~D~~I~vwd~~  587 (809)
                      .|...+..+.||++||.+.+|..+
T Consensus       323 ~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  323 LFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             hhhcccceeeccCCCceEEEEecC
Confidence            999889999999999999999974

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.7e-18  Score=173.73  Aligned_cols=251  Identities=15%  Similarity=0.165  Sum_probs=174.0

Q ss_pred             eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-CCCEEEEEcCCCcEEE
Q 003579          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISI  251 (809)
Q Consensus       173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-g~~~lasg~~dg~I~i  251 (809)
                      +...+.||.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|-|. +..++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            445688999999999999999999999999999999999999999999999999999999985 3348999999999999


Q ss_pred             EECCCc----------eeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCC------CceeEEeccCCC
Q 003579          252 WNLEKR----------RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDG------DPRLLRFRSGHS  314 (809)
Q Consensus       252 wdl~~~----------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~------~~~~~~~~~~h~  314 (809)
                      +|+...          ....... .|...|..++-.|++ ..+.+++.||+++.+|+.....      .+..+......-
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999852          2233333 799999999999999 5888999999999999976421      111112222223


Q ss_pred             CCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579          315 APPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (809)
Q Consensus       315 ~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  393 (809)
                      -...|+..+| +..+|++|+.|-..++||.+.......-.              ......+|.                 
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~--------------~~~~~~pp~-----------------  249 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSD--------------GTMNTCPPK-----------------  249 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCC--------------ccccCCCCc-----------------
Confidence            4567899999 66789999999999999964321111000              000000110                 


Q ss_pred             EeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (809)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (809)
                          +.+.++-|...........+   ......++-++|+|+|.-+++....-.|++||+..++....+
T Consensus       250 ----~~~cv~yf~p~hlkn~~gn~---~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  250 ----DCRCVRYFSPGHLKNSQGNL---DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ----ccchhheecCccccCccccc---ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence                00011111100000000000   000134677899999999999999999999999776654433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=8.6e-17  Score=169.33  Aligned_cols=294  Identities=14%  Similarity=0.168  Sum_probs=176.8

Q ss_pred             EEeCCCeEEEEEeeC-Ce--EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC-ceeeeeeecccccceEE
Q 003579          198 VGCSDGKIHVHNVRY-DE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIIS  273 (809)
Q Consensus       198 ~g~~dg~i~iwd~~~-~~--~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~-~~~~~~~~~~h~~~V~~  273 (809)
                      +...++.|.+|++.+ ++  .+..+..  .+....++++|+++.+++++..++.|.+|++.. ++....-.....+....
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            336689999999974 33  3444433  356788999999994444445688999999973 43321111123345778


Q ss_pred             EEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE-CCCCEEEEEeeeccccee
Q 003579          274 LHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRE  351 (809)
Q Consensus       274 l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~  351 (809)
                      ++|+|+++++++++. ++.|.+|+++........+.... +...+.+++++|+++++++++ .++.|.+||+.+......
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            999999998887764 88999999875332222233222 334577889999999886555 568899999864321110


Q ss_pred             cchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE
Q 003579          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (809)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~  431 (809)
                      ...                                                            .....            
T Consensus       164 ~~~------------------------------------------------------------~~~~~------------  171 (330)
T PRK11028        164 QEP------------------------------------------------------------AEVTT------------  171 (330)
T ss_pred             cCC------------------------------------------------------------Cceec------------
Confidence            000                                                            00000            


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cCeEEEEECCC--Cce
Q 003579          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKG--RDL  508 (809)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~--~~~  508 (809)
                                                              ........++|+|++++++++.. ++.|.+|++..  ++.
T Consensus       172 ----------------------------------------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~  211 (330)
T PRK11028        172 ----------------------------------------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI  211 (330)
T ss_pred             ----------------------------------------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence                                                    00011234455555555544443 55555555542  211


Q ss_pred             --eeeeec-------CCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCCeEEEEEecCC---CCeeeEEECCCCCEEEEE
Q 003579          509 --KSRWEV-------GCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHT---DRITDFCFSEDGKWLLSS  575 (809)
Q Consensus       509 --~~~~~~-------~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~~~~~~~~~h~---~~I~~l~fspdg~~l~s~  575 (809)
                        +..+..       ......+.++|++++++++.. ++.|.+|++.......++.+|.   .....+.|+|||++|+++
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence              111110       112346889999999999865 7899999986543222222221   245689999999999987


Q ss_pred             eC-CCeEEEEEcC--CccE--EEEeeeCcceEEEEE
Q 003579          576 GM-DGSLRIWDVI--LARQ--IDAIHVDVSITALSL  606 (809)
Q Consensus       576 s~-D~~I~vwd~~--~~~~--i~~~~~~~~v~~l~~  606 (809)
                      .. +++|.+|++.  +|.+  +..+.......+++|
T Consensus       292 ~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        292 GQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             EccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence            75 8999999874  4443  333433333555554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.81  E-value=5.9e-17  Score=169.31  Aligned_cols=334  Identities=17%  Similarity=0.198  Sum_probs=211.4

Q ss_pred             CEEE-EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579          152 NKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (809)
Q Consensus       152 ~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l  230 (809)
                      +.++ +-..+|.|.+.|..+.+.+..+......-..+.++||++++++++.||.|.++|+.+++.+.++..+  ....++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceE
Confidence            3443 4556899999999999999999875555556789999999999999999999999999999999875  567899


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecc------cccceEEEEEecCCCEEEEEcCC-CcEEEEEeeCCCCC
Q 003579          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA------HDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGD  303 (809)
Q Consensus       231 ~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~d-~~i~vw~~~~~~~~  303 (809)
                      ++++||++++++....+.+.++|.++.+.+..+..+      ....+.++..++..+.++..-.| +  ++|-++..+..
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~--~I~vVdy~d~~  161 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG--EIWVVDYSDPK  161 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT--EEEEEETTTSS
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC--eEEEEEecccc
Confidence            999999955555557899999999999998888732      23467888889999866665554 5  45655544433


Q ss_pred             ceeEEeccCCCCCCeeEEEecCCCEEEEEE-CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (809)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (809)
                      ....... .....+....|+|++++++.+. .+..+.++|..+.+....+..+.                          
T Consensus       162 ~~~~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~--------------------------  214 (369)
T PF02239_consen  162 NLKVTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK--------------------------  214 (369)
T ss_dssp             CEEEEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS--------------------------
T ss_pred             ccceeee-cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc--------------------------
Confidence            2222222 3445678899999999887754 45567777755433221111000                          


Q ss_pred             cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (809)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (809)
                                                 .           .|+.+...                                +
T Consensus       215 ---------------------------~-----------p~~~~~~~--------------------------------~  224 (369)
T PF02239_consen  215 ---------------------------K-----------PHPGPGAN--------------------------------F  224 (369)
T ss_dssp             ---------------------------S-----------BEETTEEE--------------------------------E
T ss_pred             ---------------------------c-----------cccccccc--------------------------------c
Confidence                                       0           00000000                                0


Q ss_pred             eCcccccccCcc--ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEE----eCC
Q 003579          463 LDMSERSNYAHN--GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV----ADD  536 (809)
Q Consensus       463 ~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~----~~d  536 (809)
                               .|.  +.+....  ..+...++.-....+.+||..+.+.++++...+.-..+..||+++++.+.    .+.
T Consensus       225 ---------php~~g~vw~~~--~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~  293 (369)
T PF02239_consen  225 ---------PHPGFGPVWATS--GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA  293 (369)
T ss_dssp             ---------EETTTEEEEEEE--BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH
T ss_pred             ---------cCCCcceEEeec--cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC
Confidence                     111  1222221  22333333333346668999999999999988666889999999999998    456


Q ss_pred             CeEEEEEcCCCeEEEEEecCC-CCeeeEEECCCCCEEEEEe--CCCeEEEEEcCCccEEEEeee
Q 003579          537 LVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLSSG--MDGSLRIWDVILARQIDAIHV  597 (809)
Q Consensus       537 ~~I~v~d~~~~~~~~~~~~h~-~~I~~l~fspdg~~l~s~s--~D~~I~vwd~~~~~~i~~~~~  597 (809)
                      ..|.++|.++.+.+.++.... .++..+.|++||+++..+.  .++.|.|||..+.+++..+..
T Consensus       294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~  357 (369)
T PF02239_consen  294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV  357 (369)
T ss_dssp             T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred             ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence            899999999999888876332 3589999999999766544  344799999999999998873

...

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.7e-19  Score=195.63  Aligned_cols=275  Identities=19%  Similarity=0.273  Sum_probs=207.8

Q ss_pred             eCCCcEEEEEcCCC--ccccceeeeEEcCCccccEEEEeCCCCC--CEEEEEeCCCeEEEEeCCCC------ceEEEEcC
Q 003579          110 DIDGNMFIWAFKGI--EENLAPVGHVKLDDKFTPTCIMHPDTYL--NKVIVGSQEGSLQLWNISTK------KKLYEFKG  179 (809)
Q Consensus       110 ~~dg~i~vWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~l~~~~~dg~i~lwd~~~~------~~~~~~~~  179 (809)
                      +.+.++-+|.++-.  +....++..+.....| ...+|.+.+.-  ..|+.|..||.|.+||...-      ..+.+...
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF-~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~  114 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQSSNRF-NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK  114 (1049)
T ss_pred             ccccccceeeecccCccccccccccccccccc-eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence            34556666655432  2212234444434444 34555554421  24888999999999998642      35667789


Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCeEEEEE-eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc
Q 003579          180 WGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (809)
Q Consensus       180 ~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~  257 (809)
                      |.+.|..+.|++... +||+|+.||.|.|||+.+-+.-.+. .....+.|.+++|+..-.++|++++.+|.+.|||++..
T Consensus       115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK  194 (1049)
T ss_pred             cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence            999999999999765 9999999999999999986665555 23246789999999988889999999999999999999


Q ss_pred             eeeeeeecccc--cceEEEEEecCCC-EEEEEcCC---CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEE
Q 003579          258 RLQSVIREAHD--NAIISLHFFANEP-VLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL  330 (809)
Q Consensus       258 ~~~~~~~~~h~--~~V~~l~~~~~~~-~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~  330 (809)
                      +.+-.+. .|.  ..+..++|+|+.. .+++++.|   -.|.+||++..+   ..++.+.+|...|.++.|++ |.++++
T Consensus       195 ~pii~ls-~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D~~lll  270 (1049)
T KOG0307|consen  195 KPIIKLS-DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQDPRLLL  270 (1049)
T ss_pred             Ccccccc-cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCCchhhh
Confidence            7776666 333  3488999999875 66666654   368999988765   35566689999999999999 558999


Q ss_pred             EEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeee
Q 003579          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (809)
Q Consensus       331 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  410 (809)
                      +++.|+.+.+|+..+++...++..                                                        
T Consensus       271 SsgkD~~ii~wN~~tgEvl~~~p~--------------------------------------------------------  294 (1049)
T KOG0307|consen  271 SSGKDNRIICWNPNTGEVLGELPA--------------------------------------------------------  294 (1049)
T ss_pred             cccCCCCeeEecCCCceEeeecCC--------------------------------------------------------
Confidence            999999999999988766655532                                                        


Q ss_pred             eecceeeecCCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 003579          411 VLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGI  457 (809)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~~  457 (809)
                                  ....+..+.|.|.. ..+++++-+|.|.||+++++.
T Consensus       295 ------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  295 ------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ------------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence                        12567778888865 488889999999999998765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=9.2e-18  Score=162.18  Aligned_cols=233  Identities=15%  Similarity=0.208  Sum_probs=183.6

Q ss_pred             EEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCccc---cceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCC
Q 003579           88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (809)
Q Consensus        88 ~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (809)
                      ...||+++|..+.|   +...|+|||.|.+|.||++....+.   ..++..+.+|...+-.+++||... |.|++++.|+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCc
Confidence            37899999999996   5788999999999999999876553   345778888999999999999875 8899999999


Q ss_pred             eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (809)
Q Consensus       162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la  241 (809)
                      +|.+||+.+|+.+.++. |..-|.++.|+-+|.++++++.|..|+|||.++++.+..-..|....-.-.-|..+|. ++.
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~t  232 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFT  232 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eee
Confidence            99999999999999988 9999999999999999999999999999999999999988666555667778888998 666


Q ss_pred             EEc---CCCcEEEEECCCceeeeee-ecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579          242 SGA---SSGVISIWNLEKRRLQSVI-REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (809)
Q Consensus       242 sg~---~dg~I~iwdl~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (809)
                      +|-   .+..+.+||..+-..-..+ .....++|.---|.+|..++..+| .|+.||.|.+.....-...+..+ ....+
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f-~S~ep  311 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF-SSKEP  311 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc-ccCCc
Confidence            664   5789999987665322222 113456777777888888776655 59999999886553222222222 22344


Q ss_pred             CeeEEEec
Q 003579          317 PLCIRFYA  324 (809)
Q Consensus       317 v~~i~~~~  324 (809)
                      -..+.|.|
T Consensus       312 QRG~g~mP  319 (472)
T KOG0303|consen  312 QRGMGFMP  319 (472)
T ss_pred             cccccccc
Confidence            55666666

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.5e-18  Score=175.41  Aligned_cols=271  Identities=21%  Similarity=0.340  Sum_probs=200.2

Q ss_pred             eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC----CCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579          262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (809)
Q Consensus       262 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~----~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (809)
                      ++. .|...|+.+.|.+..+.|++++.||.+++|++..    .......+.++.+|.+||.|+++.++++++++|+.||+
T Consensus       289 tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            444 7889999999999999999999999999999832    22345667788999999999999999999999999999


Q ss_pred             EEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceee
Q 003579          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (809)
Q Consensus       338 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (809)
                      |+.|++..........                                                       ..   ....
T Consensus       368 I~~w~~p~n~dp~ds~-------------------------------------------------------dp---~vl~  389 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSY-------------------------------------------------------DP---SVLS  389 (577)
T ss_pred             eeeeccCCCCCccccc-------------------------------------------------------Cc---chhc
Confidence            9999875221110000                                                       00   0111


Q ss_pred             ecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcC
Q 003579          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG  496 (809)
Q Consensus       418 ~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg  496 (809)
                      ....+|...+..+++|+...+|+.++.||+++.|+...... ..+..      ....+.-..+.+-... ...++...-+
T Consensus       390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~------~~e~g~Plsvd~~ss~~a~~~~s~~~~  462 (577)
T KOG0642|consen  390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE------PKEHGYPLSVDRTSSRPAHSLASFRFG  462 (577)
T ss_pred             cceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC------ccccCCcceEeeccchhHhhhhhcccc
Confidence            22336778999999999999999999999999999987766 33321      1112223344443222 1222222223


Q ss_pred             eEEEEECCCCceeeeeecC--------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579          497 DIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (809)
Q Consensus       497 ~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd  568 (809)
                      .-.++++.....+..+...        ..+..+..+|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+
T Consensus       463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n  542 (577)
T KOG0642|consen  463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN  542 (577)
T ss_pred             cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence            3333444444333333221        46778899999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCccEEEEeeeC
Q 003579          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD  598 (809)
Q Consensus       569 g~~l~s~s~D~~I~vwd~~~~~~i~~~~~~  598 (809)
                      |-+|++++.||.+++|.+....++.....+
T Consensus       543 g~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  543 GPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             CceEEeecCCceeehhhccchheeeccccc
Confidence            999999999999999999877776655433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.7e-16  Score=143.59  Aligned_cols=269  Identities=17%  Similarity=0.274  Sum_probs=192.7

Q ss_pred             CCcEEEEEeCCeEEEEECCe---EEEEEC-----------Cee-EEEEccccccEEEEEEeCCEEEEEeCCCcEEEEEcC
Q 003579           57 KKIRALASYRDYTFAAYGNH---IAVVKR-----------AHQ-VATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFK  121 (809)
Q Consensus        57 ~~I~~la~~~~~~~~a~g~~---i~vw~~-----------~~~-~~~~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~  121 (809)
                      ..|-+-|++|.++|++.|+.   |.+...           ++. +...++|.++|..+.|..++|++|+ ||.|+=|...
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeeh
Confidence            34556678899999888875   777752           222 3336899999999999999999998 7999999987


Q ss_pred             CCccc---------cceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCC
Q 003579          122 GIEEN---------LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA  192 (809)
Q Consensus       122 ~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~  192 (809)
                      ..+..         ..|...-...-..+..+.+.|..  |-|++++.|+.++-||+++|+..+++++|+..|.+++--..
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            65431         11111111122334566677877  77888889999999999999999999999999999998666


Q ss_pred             CCEEEEEeCCCeEEEEEeeCCeEEEEEecc---------CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeee
Q 003579          193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHS---------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (809)
Q Consensus       193 ~~~la~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~  263 (809)
                      ...+.+|+.||++++||.++++.+..+...         ....|.+++-+.|   .|+.|+ ...+.+|+++..+...++
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse~t~vf  243 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSESTCVF  243 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCCceEEE
Confidence            667999999999999999999988877532         1235777776655   677665 568999999999888888


Q ss_pred             ecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEE
Q 003579          264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLF  341 (809)
Q Consensus       264 ~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~w  341 (809)
                      .  -...+..+.|..+  .+++++..+.+.-|.+...     +.......+...++..+.... ++|-.++....+.++
T Consensus       244 p--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv-----l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  244 P--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV-----LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             e--cccceeEeeeecc--eEEEeccccceeeeeeccE-----EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            6  5677888888755  6788888889999966432     222222333334444444333 233344555555544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=3.5e-19  Score=175.46  Aligned_cols=297  Identities=16%  Similarity=0.235  Sum_probs=229.4

Q ss_pred             CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEE
Q 003579          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (809)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  394 (809)
                      ..+..+.|+.+|++++.++..|.+..+|..+.....++...                                       
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------------------------------------  170 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------------------------------------  170 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh---------------------------------------
Confidence            45788999999999999999999999999888776665431                                       


Q ss_pred             eecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcc
Q 003579          395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  474 (809)
Q Consensus       395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (809)
                                                    ..|..+.|-.+.++++++ ....+++||-.. ..+..+         ...
T Consensus       171 ------------------------------Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-tElHCl---------k~~  209 (545)
T KOG1272|consen  171 ------------------------------ETVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-TELHCL---------KRH  209 (545)
T ss_pred             ------------------------------hhhhhhhhhcchHHHHhh-hhceEEEecCCC-cEEeeh---------hhc
Confidence                                          456666777777777765 556788888553 333333         234


Q ss_pred             ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 003579          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF  553 (809)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~  553 (809)
                      ..|..+.|-|..-+|++++..|.++.-|+.+|+++..+... +.+..|+-+|-+..+-+|..+|+|.+|.....+++..+
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            67889999999999999999999999999999999999776 78889999999999999999999999999999999999


Q ss_pred             ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec-----
Q 003579          554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN-----  628 (809)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~-----  628 (809)
                      -.|.++|.++++.++|+|++|++.|..++|||+..-..+..+..+.+...+++|..| +||.+-.+  .|.+|.-     
T Consensus       290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~--~v~iw~d~~~~s  366 (545)
T KOG1272|consen  290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD--HVQIWKDALKGS  366 (545)
T ss_pred             HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC--eeeeehhhhcCC
Confidence            999999999999999999999999999999999998888888777789999999777 45554444  4999952     


Q ss_pred             -----------------CcccCCCCCCccCCCCCcceeecCCCccCcCCccCCCCCCCCCccCCCCCCCCCCCCCccccc
Q 003579          629 -----------------RCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQI  691 (809)
Q Consensus       629 -----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (809)
                                       .-.|+|......+.....+.++.+|+.....-+..++.--   +.... -.|.+.-.-.+.|.
T Consensus       367 ~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPf---etrKQ-RqE~EVr~LLeKip  442 (545)
T KOG1272|consen  367 GHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPF---ETRKQ-RQEKEVRSLLEKIP  442 (545)
T ss_pred             CCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcc---hhhhH-HhHHHHHHHHhhCC
Confidence                             2345666666666777788889999985554433322110   00000 00112223356688


Q ss_pred             cCceecc
Q 003579          692 PDLVTLS  698 (809)
Q Consensus       692 ~~l~tls  698 (809)
                      ++||+|-
T Consensus       443 pElIsLd  449 (545)
T KOG1272|consen  443 PELISLD  449 (545)
T ss_pred             hHhEEec
Confidence            8899886

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.78  E-value=6.1e-17  Score=152.80  Aligned_cols=395  Identities=12%  Similarity=0.115  Sum_probs=252.4

Q ss_pred             ccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce
Q 003579           94 AKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK  173 (809)
Q Consensus        94 ~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~  173 (809)
                      ++..+++++|+|+++++ +-.+.|-|..+.+.....    .. -.-+.-..+..+.- -.|.+.+.++.|++|++...+-
T Consensus        11 ~~~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~qlf----~c-ldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpew   83 (447)
T KOG4497|consen   11 NPFCSFSPCGNYIASLS-RYRLVIRDSETLQLHQLF----LC-LDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPEW   83 (447)
T ss_pred             CCceeECCCCCeeeeee-eeEEEEeccchhhHHHHH----HH-HHHhhheeeeccce-eeeeeeeccceEEEEEeeccee
Confidence            44667778999999998 558888888776652110    00 01112233444441 3455667888999999988888


Q ss_pred             EEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCc---E
Q 003579          174 LYEFKGWGSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV---I  249 (809)
Q Consensus       174 ~~~~~~~~~~I~~l~~sp~~~~-la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~---I  249 (809)
                      ...+.....++.++.|||||+. |.+..-+-+|.+|.+.+.+....  .+.+..+..++|+|||+ +.+..+.-..   +
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv  160 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--PHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYV  160 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--cccccCceeEEECCCCc-eeeeeecccHHHHH
Confidence            8888888899999999999954 55556688999999987665433  22356779999999999 7777764311   2


Q ss_pred             EEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (809)
Q Consensus       250 ~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (809)
                      .|..-..-.+++.+. -.+-..+.+.|+|||..|+.-..-=.-+++.+              .-.-.+..+.|+|.+++|
T Consensus       161 ~i~~c~~W~ll~~f~-~dT~DltgieWsPdg~~laVwd~~Leykv~aY--------------e~~lG~k~v~wsP~~qfl  225 (447)
T KOG4497|consen  161 QISSCKAWILLKEFK-LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--------------ERGLGLKFVEWSPCNQFL  225 (447)
T ss_pred             HHHhhHHHHHHHhcC-CCcccccCceECCCCcEEEEecchhhheeeee--------------eeccceeEEEeccccceE
Confidence            222112223333343 34456789999999987765322111111111              112357889999999999


Q ss_pred             EEEECCCCEEEEEeeecccceecchhhH---------HHHH-hhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579          330 LSAGQDRAFRLFSVIQDQQSRELSQRHV---------AKRA-RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (809)
Q Consensus       330 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (809)
                      +.|+.|+.+|+.+-.+-+...++.....         .+.. +........+.+.|        .+       +-+|...
T Consensus       226 avGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p--------~~-------~~a~~~~  290 (447)
T KOG4497|consen  226 AVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP--------TD-------LEAHIWE  290 (447)
T ss_pred             EeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC--------Cc-------cccCccc
Confidence            9999999999877655544443321110         0000 00000111111111        00       0011111


Q ss_pred             ceEEEEEeeeeeecceeeecCCCC---CCCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeeeeeCcccccccCcc
Q 003579          400 AQAYVWRLQNFVLGEHILRPCPEN---PTAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHN  474 (809)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~---~~~v~~v~~s~~g~~l~~g~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~h~  474 (809)
                      ..-..|.........+.+++....   .-.+.-++|++|..++++-.++  +.+-+||++..+....+         ...
T Consensus       291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL---------iQk  361 (447)
T KOG4497|consen  291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL---------IQK  361 (447)
T ss_pred             cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh---------hhc
Confidence            111122222222333444433322   3457789999999999987665  68899999988776655         356


Q ss_pred             ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCC
Q 003579          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL  537 (809)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~  537 (809)
                      .+|....|+|....|+.+.....+++|.......+..-..+-.|..+.|+-+|..++..+.|.
T Consensus       362 ~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence            789999999999989888888889999988766666555567899999999999998888775

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=1.6e-17  Score=152.21  Aligned_cols=291  Identities=17%  Similarity=0.224  Sum_probs=200.0

Q ss_pred             eeEEEEccccccEEEEEEe-CCEEEEEeCCCcEEEEEcCCCccccceeeeEEc-CCccccEEEEeCCCCCCEEEEEeCCC
Q 003579           84 HQVATWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-DDKFTPTCIMHPDTYLNKVIVGSQEG  161 (809)
Q Consensus        84 ~~~~~~~~h~~~V~~l~~~-g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~l~~~~~dg  161 (809)
                      .....+++|.+.|+++.|+ ..+|.++...|.|++|++++...    ...+.. +..++...-.-|.   ..+.+-+.|+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~----~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~   77 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD----LPLIRLFGRLFITNLQSIPN---DSLDTQGRDP   77 (323)
T ss_pred             CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCcc----chhhhhhccceeeceeecCC---cchhhcCCCc
Confidence            3456678999999999995 67899999999999999999876    455553 3344434434443   3588888999


Q ss_pred             eEEEEeCCCCceEEEEcCCCCCEEEEEEcCC-----C----CEEEEEeCCC-eEEEEEeeCCeEEEEEec---cCCCcEE
Q 003579          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPA-----L----DVVAVGCSDG-KIHVHNVRYDEELVTFTH---SMRGAVT  228 (809)
Q Consensus       162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~-----~----~~la~g~~dg-~i~iwd~~~~~~~~~~~~---~~~~~V~  228 (809)
                      .+.+|++..+.-+.   .|.-.+.++.|.+.     +    ..++.-+... .+++-|......+.....   ...+.+.
T Consensus        78 ~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm  154 (323)
T KOG0322|consen   78 LLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM  154 (323)
T ss_pred             eEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence            99999997654332   12233344444332     1    1222211110 122222221112221111   1135677


Q ss_pred             EEEEecC--CCCEEEEEcCCCcEEEEECCCcee----------eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579          229 ALAFSSD--GQPLLASGASSGVISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (809)
Q Consensus       229 ~l~fs~d--g~~~lasg~~dg~I~iwdl~~~~~----------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~  296 (809)
                      |..+.-+  ...+|++|..+|.+.+||+.++..          ..... .|..+|.++.|.+.-..=++++.+..+..|+
T Consensus       155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh-hccCcceeeeechhhcCCcCCCccccceeee
Confidence            7764332  334677888999999999999732          22233 6899999999988766678888899999999


Q ss_pred             eeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (809)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (809)
                      ++...+....-..+.-....+..++.-||++.++++|.|+.+|+|+.++......+.                       
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-----------------------  290 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-----------------------  290 (323)
T ss_pred             eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-----------------------
Confidence            987755444433333345568899999999999999999999999988766544432                       


Q ss_pred             eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003579          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (809)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~  453 (809)
                                                                   .|...+.+++|+|+.+.++.++.|++|.+|++
T Consensus       291 ---------------------------------------------yHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  291 ---------------------------------------------YHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ---------------------------------------------hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                                                         35689999999999999999999999999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=6e-16  Score=140.13  Aligned_cols=285  Identities=15%  Similarity=0.170  Sum_probs=205.4

Q ss_pred             ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC------CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  343 (809)
                      .|.+-+++|.+++|+.|..+|.|.+..+....      .....+....+|.++++.++|+  ..+|++|+ ||.|+-|.-
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            46667889999999999999999999876431      1123344557999999999998  34677776 599999987


Q ss_pred             eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (809)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (809)
                      +.......                                                 .-++|.........      .-.
T Consensus        89 ~E~~es~~-------------------------------------------------~K~lwe~~~P~~~~------~~e  113 (325)
T KOG0649|consen   89 NEEEESLA-------------------------------------------------TKRLWEVKIPMQVD------AVE  113 (325)
T ss_pred             hhhhhhcc-------------------------------------------------chhhhhhcCccccC------ccc
Confidence            54432111                                                 01112221110000      011


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  503 (809)
                      -..|.++.+.|..+-++.++.|+.++.||+.+|+....+.        +|...|.+++--..+..+++|+.||++|+||.
T Consensus       114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~  185 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDT  185 (325)
T ss_pred             CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEec
Confidence            2578899999999888888899999999999999999996        99999999998666677999999999999999


Q ss_pred             CCCceeeeeecC-----------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEE
Q 003579          504 KGRDLKSRWEVG-----------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL  572 (809)
Q Consensus       504 ~~~~~~~~~~~~-----------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l  572 (809)
                      ++++.+..++..           ..|.  +..-+...+++|+ ...+.+|.+++.++...|. -..++..+.|-.|  .+
T Consensus       186 kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~v  259 (325)
T KOG0649|consen  186 KTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CV  259 (325)
T ss_pred             cccceeEEeccccChhhcCcccCceeE--EEeccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eE
Confidence            999998887543           2233  3444566776654 5679999999998888776 5567888899765  78


Q ss_pred             EEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          573 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       573 ~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                      ++++..+.|.-|.+. |.+-......++ +++..|+..--.++++....+.+.+..
T Consensus       260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence            888888899999875 555555555444 788887765544444443433466654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=1.4e-16  Score=147.74  Aligned_cols=275  Identities=16%  Similarity=0.261  Sum_probs=199.1

Q ss_pred             EEEEEeC----CCeEEEEEeeCCe--EEEEEeccCCCcEEEEEEecCCCCEEEEEcCC-------CcEEEEECCCc----
Q 003579          195 VVAVGCS----DGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASS-------GVISIWNLEKR----  257 (809)
Q Consensus       195 ~la~g~~----dg~i~iwd~~~~~--~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d-------g~I~iwdl~~~----  257 (809)
                      .+++|+.    |+.|.+.++..+.  .......|+.+.|..++-+|-.+.+|+++..+       -.+.||.+...    
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S  107 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS  107 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence            4455543    5777777776443  33333445589999999999888789887642       24789988654    


Q ss_pred             -----eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEE--eccCCCCCCeeEEEec--CCCE
Q 003579          258 -----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR--FRSGHSAPPLCIRFYA--NGRH  328 (809)
Q Consensus       258 -----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~--~~~~h~~~v~~i~~~~--~~~~  328 (809)
                           +++..+...+-+.|.|+.|.|++..+++-. |+.|.+|+++........+.  ...+|....++-+|+|  +|+.
T Consensus       108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq  186 (370)
T KOG1007|consen  108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ  186 (370)
T ss_pred             ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence                 334445545667999999999999998876 88999999887654211111  1123556677788888  7777


Q ss_pred             EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (809)
Q Consensus       329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  408 (809)
                      +++. .|++++.||+++..+...+.                                                       
T Consensus       187 v~tt-~d~tl~~~D~RT~~~~~sI~-------------------------------------------------------  210 (370)
T KOG1007|consen  187 VATT-SDSTLQFWDLRTMKKNNSIE-------------------------------------------------------  210 (370)
T ss_pred             EEEe-CCCcEEEEEccchhhhcchh-------------------------------------------------------
Confidence            6665 47788888887654322211                                                       


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC-
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-  487 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-  487 (809)
                                                                                    .+|...|..+.|+|+.+ 
T Consensus       211 --------------------------------------------------------------dAHgq~vrdlDfNpnkq~  228 (370)
T KOG1007|consen  211 --------------------------------------------------------------DAHGQRVRDLDFNPNKQH  228 (370)
T ss_pred             --------------------------------------------------------------hhhcceeeeccCCCCceE
Confidence                                                                          27888999999999875 


Q ss_pred             EEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEEEEEeeC-CCEEEEEeCCCeEEEEEcCCC-----------------
Q 003579          488 LMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRV-NGLLATVADDLVIRLFDVVAL-----------------  547 (809)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~-~~~la~~~~d~~I~v~d~~~~-----------------  547 (809)
                      +|++|+.||.|+|||.+.. .++..+..+ ..+.++.|+|. ..++.+++.|..|.+|...+-                 
T Consensus       229 ~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~  308 (370)
T KOG1007|consen  229 ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESED  308 (370)
T ss_pred             EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcc
Confidence            6789999999999998754 456666555 78999999995 568889999999999865321                 


Q ss_pred             ------------eEEEEEecCCCCeeeEEECCCCCEE-EEEeCCCeEEEEEcCC
Q 003579          548 ------------RMVRKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVIL  588 (809)
Q Consensus       548 ------------~~~~~~~~h~~~I~~l~fspdg~~l-~s~s~D~~I~vwd~~~  588 (809)
                                  ..+.++..|.+.|.+++||.-..|+ |+-|.||.+.|=.++.
T Consensus       309 ~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  309 EDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             hhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                        1244577799999999999977776 5778999998877663

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=8.9e-17  Score=149.12  Aligned_cols=296  Identities=18%  Similarity=0.212  Sum_probs=199.7

Q ss_pred             CCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC-------CeEEEEeCCCC---------ceEE
Q 003579          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-------GSLQLWNISTK---------KKLY  175 (809)
Q Consensus       112 dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-------g~i~lwd~~~~---------~~~~  175 (809)
                      |+.|.+-+++.+.-.. .-+.+..+.+.+...+-+|... ..++++..+       -...||++...         +++.
T Consensus        39 dNqVhll~~d~e~s~l-~skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSEL-LSKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             cceeEEEEecCccchh-hhhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            6667777666543211 1233344555666666677652 334444331       23679988532         2333


Q ss_pred             EEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE-EEEEec----cCCCcEEEEEEec--CCCCEEEEEcCCC
Q 003579          176 EFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE-LVTFTH----SMRGAVTALAFSS--DGQPLLASGASSG  247 (809)
Q Consensus       176 ~~~-~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~-~~~~~~----~~~~~V~~l~fs~--dg~~~lasg~~dg  247 (809)
                      .+. .+-+.|.|+.|.|+++.+|+-. |..|.+|++..+.. +..+..    .+....++-+|+|  ||. .+++. .|+
T Consensus       117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt-~d~  193 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATT-SDS  193 (370)
T ss_pred             cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEEe-CCC
Confidence            443 3456899999999999998876 78999999987765 333332    2345688889998  555 55554 489


Q ss_pred             cEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-C
Q 003579          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N  325 (809)
Q Consensus       248 ~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~  325 (809)
                      ++..||+++.+....+..+|...|..+.|.|+.. +|++++.||.|++||.+...   ..+..+.+|...|.+++|+| -
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc
Confidence            9999999999999999999999999999999865 88999999999999887664   56788899999999999999 5


Q ss_pred             CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (809)
Q Consensus       326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (809)
                      .+.++++|.|..+.+|....-.....+.......   .......+.+                                 
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~des---e~e~~dseer---------------------------------  314 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDES---ESEDEDSEER---------------------------------  314 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccc---cCcchhhHHh---------------------------------
Confidence            6788999999999999765432211111000000   0000000000                                 


Q ss_pred             EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 003579          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQ  454 (809)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~g~~~g~i~i~~~~  454 (809)
                         .+.+....+.....|...|.+++||.-..++ ++-+.||.+.+=++.
T Consensus       315 ---~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  315 ---VKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ---cccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence               0011233455666788999999999866555 556778988876654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=2.2e-17  Score=167.22  Aligned_cols=260  Identities=19%  Similarity=0.326  Sum_probs=190.5

Q ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC--------CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (809)
Q Consensus       175 ~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~--------~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d  246 (809)
                      .++..|...|+.++|.|....|++++.||.+.+|++..        -+++.+|..| .++|.|++..+++. .+.+|+.|
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~-~~ysgg~D  365 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGE-HCYSGGID  365 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCce-EEEeeccC
Confidence            36678899999999999999999999999999999932        2478888886 99999999999999 89999999


Q ss_pred             CcEEEEECCCc----------eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579          247 GVISIWNLEKR----------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (809)
Q Consensus       247 g~I~iwdl~~~----------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (809)
                      |+|+.|++...          .+...+. ||.+.|+.+++++....|++++.||+++.|+.....  +...... ...+-
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~--~~~f~~~-~e~g~  441 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES--PCTFGEP-KEHGY  441 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCceEEeeccCCcC--ccccCCc-cccCC
Confidence            99999965421          2344455 999999999999999999999999999999654432  2112222 22233


Q ss_pred             CeeEEEecCC-CEEEEEECCCCEEEEEeeecc---cceecchhhHHHHHhhccchhhhhccCceeEEeecccccccccee
Q 003579          317 PLCIRFYANG-RHILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (809)
Q Consensus       317 v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  392 (809)
                      +.++.+-... ...++   +...+.+++....   ....+...                                     
T Consensus       442 Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~-------------------------------------  481 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLLIFESS-------------------------------------  481 (577)
T ss_pred             cceEeeccchhHhhhh---hcccccccchhhhhhhheeecccc-------------------------------------
Confidence            4555554322 12222   2223333322211   11111000                                     


Q ss_pred             EEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccC
Q 003579          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA  472 (809)
Q Consensus       393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~  472 (809)
                                              ..+.......+.-+...|.+.+.+.+..++.|+++|..++.......        +
T Consensus       482 ------------------------~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--------a  529 (577)
T KOG0642|consen  482 ------------------------ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--------A  529 (577)
T ss_pred             ------------------------CCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee--------e
Confidence                                    00000112456677788889999999999999999999999988876        8


Q ss_pred             ccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeee
Q 003579          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW  512 (809)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  512 (809)
                      |...++++++.|+|.+|++++.|+.+++|.+....++...
T Consensus       530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             ccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            9999999999999999999999999999998776655443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.8e-15  Score=158.24  Aligned_cols=433  Identities=14%  Similarity=0.144  Sum_probs=272.6

Q ss_pred             cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCC------------eEEEEECCe---EEEEECCe--eE
Q 003579           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD------------YTFAAYGNH---IAVVKRAH--QV   86 (809)
Q Consensus        24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~------------~~~~a~g~~---i~vw~~~~--~~   86 (809)
                      .+...+++++.+..|.+-|..+.+++.....|+..|+.+.+.|.            ...+|+++.   |.+||...  .+
T Consensus        23 w~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~  102 (1062)
T KOG1912|consen   23 WSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI  102 (1062)
T ss_pred             cCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh
Confidence            45677899999999999999999999999899999999998753            345677654   99999643  34


Q ss_pred             EEEccccccEEEEEE-----eC-CEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC
Q 003579           87 ATWSRHSAKVNLLLL-----FG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE  160 (809)
Q Consensus        87 ~~~~~h~~~V~~l~~-----~g-~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d  160 (809)
                      ..+..|..+|..+.|     +. +.|+.......|.+|+..+|+.    +-............-+.|-.. ..+.+-+..
T Consensus       103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~  177 (1062)
T KOG1912|consen  103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDS-RHFCVLGSK  177 (1062)
T ss_pred             hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCc-ceEEEEccC
Confidence            448899999999997     23 6788888899999999999987    444333333333333555443 445555566


Q ss_pred             CeEEEEeCC-------CCceEEEEcCCCC------------CE-------------EEEEEcCCCCEEEEEeCCCeEEEE
Q 003579          161 GSLQLWNIS-------TKKKLYEFKGWGS------------SI-------------SSCVSSPALDVVAVGCSDGKIHVH  208 (809)
Q Consensus       161 g~i~lwd~~-------~~~~~~~~~~~~~------------~I-------------~~l~~sp~~~~la~g~~dg~i~iw  208 (809)
                      |.+.+-+.-       .|+..+.-..|..            .+             ..++|+|.-+-+....-...+.++
T Consensus       178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~  257 (1062)
T KOG1912|consen  178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVF  257 (1062)
T ss_pred             ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEE
Confidence            767666542       2344444333322            11             124678876655555667889999


Q ss_pred             EeeCCeEEEEEeccCCCcEEEEEEecCCC-CEEEEEcCCCcEEEEECCCc----------------eeeeeeecccccce
Q 003579          209 NVRYDEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR----------------RLQSVIREAHDNAI  271 (809)
Q Consensus       209 d~~~~~~~~~~~~~~~~~V~~l~fs~dg~-~~lasg~~dg~I~iwdl~~~----------------~~~~~~~~~h~~~V  271 (809)
                      |++-..++...... .+.+.-+.+.|+++ ..|.+.-.||.+.+|--+..                .....+..-.+-.+
T Consensus       258 dle~~~~l~vvpie-r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp  336 (1062)
T KOG1912|consen  258 DLEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRP  336 (1062)
T ss_pred             cchhhceeEEEEec-cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhccc
Confidence            99999988888776 66777888888764 36778889999999975542                11222221112222


Q ss_pred             EEEEEecC-CCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC-----CCEEEEEECCCCEEEEEeee
Q 003579          272 ISLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       272 ~~l~~~~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-----~~~l~s~~~dg~i~~wd~~~  345 (809)
                      ......|. ...++.--.+|.+.+|.+..+.-   ......+...-+..+.|+.+     ...+.+-+.||..     ..
T Consensus       337 ~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri---~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h-----~s  408 (1062)
T KOG1912|consen  337 VIGASCPSTPSALAVLYSSGDSTFWQLSNGRI---HLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSH-----SS  408 (1062)
T ss_pred             ceeecCCCChhhhhhhhhcchhHHHhhhcCCc---CcccccccccccccccccCceeehhhccccchhhcCCC-----CC
Confidence            23333343 23333334567788887764311   11111112222222333221     1123333444410     00


Q ss_pred             cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (809)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (809)
                      +....+.                     .|.                                                .
T Consensus       409 Gs~~~~~---------------------~p~------------------------------------------------p  419 (1062)
T KOG1912|consen  409 GSTCVRM---------------------RPM------------------------------------------------P  419 (1062)
T ss_pred             Cceeeec---------------------ccC------------------------------------------------c
Confidence            0000000                     000                                                0


Q ss_pred             CeEEEEEcCCC-------CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE------
Q 003579          426 AVKACTISACG-------NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA------  492 (809)
Q Consensus       426 ~v~~v~~s~~g-------~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~------  492 (809)
                      ..+-+.-.|-|       ..+++|++.|+|.++|+.++.....+.        .|...|.++.|-...+++-.+      
T Consensus       420 ~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs--------vht~~VkgleW~g~sslvSfsys~~n~  491 (1062)
T KOG1912|consen  420 ELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS--------VHTSLVKGLEWLGNSSLVSFSYSHVNS  491 (1062)
T ss_pred             ccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc--------ccccceeeeeeccceeEEEeeeccccc
Confidence            00011111111       368999999999999999999888876        899999999998766544322      


Q ss_pred             ---eCcCeEEEEECCCCceeeee--e--cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579          493 ---GYHGDIKVWDFKGRDLKSRW--E--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (809)
Q Consensus       493 ---~~dg~i~iwd~~~~~~~~~~--~--~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~  547 (809)
                         +.-+.+.+-|+.+|....--  +  ...+|..+..+..++|++....+.-+.+||+++.
T Consensus       492 ~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  492 ASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             cccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence               22245778888888554332  2  2389999999999999999999999999999764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=3.4e-18  Score=179.65  Aligned_cols=286  Identities=20%  Similarity=0.273  Sum_probs=224.2

Q ss_pred             eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (809)
Q Consensus       173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw  252 (809)
                      .+..+.+|..+|.|..|...|.++++|+.|..++||..+++.++....+| .+.|+.++.+.+.. ++|+++.|..|++|
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdlavs~~n~-~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH-SGDITDLAVSSNNT-MIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-ccccchhccchhhh-hhhhcccCceEEEE
Confidence            34456799999999999999999999999999999999999999999886 89999999998877 89999999999999


Q ss_pred             ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC--CCCceeEEeccCCCCCCeeEEEecCCCEEE
Q 003579          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (809)
Q Consensus       253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~--~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  330 (809)
                      -+..+.++..+. +|++.|++++|+|-.    +.+.||++++||.+..  .-.++.+..-  ...-+.++.|...+..++
T Consensus       260 rl~~~~pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~--~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  260 RLPDGAPVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT--EKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             ecCCCchHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc--cccceeeeeccccccccc
Confidence            999999999999 999999999999965    7788999999988722  1112222211  224566777777888899


Q ss_pred             EEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeee
Q 003579          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (809)
Q Consensus       331 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  410 (809)
                      +++.|+.-..|.........                                                            
T Consensus       333 Tgs~d~ea~n~e~~~l~~~~------------------------------------------------------------  352 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAWRS------------------------------------------------------------  352 (1113)
T ss_pred             cccCCcccccchhhHhhhhc------------------------------------------------------------
Confidence            99999988777643211000                                                            


Q ss_pred             eecceeeecCCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CE
Q 003579          411 VLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TL  488 (809)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~  488 (809)
                                    ..+.-+..+.+ ..+.+++-.+-.+.+||+.+|.......        +|...+..+.++|-+ +.
T Consensus       353 --------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--------ghsd~~yvLd~Hpfn~ri  410 (1113)
T KOG0644|consen  353 --------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--------GHSDEVYVLDVHPFNPRI  410 (1113)
T ss_pred             --------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--------ccccceeeeeecCCCcHh
Confidence                          00000001111 1344555566778899999998777665        899999999999976 45


Q ss_pred             EEEEeCcCeEEEEECCCCceeeeeec-CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE
Q 003579          489 MISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (809)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~  549 (809)
                      ..+++.||...|||+-.|.+++.+.. +..+....||+||..++...+-|.++|.....++.
T Consensus       411 ~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  411 AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            56899999999999999888776653 47788889999999999998899999987655443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=1.4e-15  Score=146.44  Aligned_cols=174  Identities=19%  Similarity=0.261  Sum_probs=143.3

Q ss_pred             CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC----CCeEEE
Q 003579          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI  521 (809)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~~  521 (809)
                      ..+++++...+..+..+         ....+|.++.++.  +.|+++-. ..|+|||+++.++++++...    ..+..+
T Consensus        68 r~Lkv~~~Kk~~~ICe~---------~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEI---------FFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             ceEEEEEcccCceEEEE---------ecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEee
Confidence            35788888877776665         3456788888764  45665555 44999999999999988654    345556


Q ss_pred             EEeeCCCEEEEEe--CCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCe-EEEEEcCCccEEEEeeeC
Q 003579          522 VYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS-LRIWDVILARQIDAIHVD  598 (809)
Q Consensus       522 ~~s~~~~~la~~~--~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~-I~vwd~~~~~~i~~~~~~  598 (809)
                      .+++.+.++|.-+  ..|.|++||..+.+.+..+..|.+++.+++|+++|.+|||||..|+ |||+.+++|+.+..|+-.
T Consensus       136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG  215 (391)
T KOG2110|consen  136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG  215 (391)
T ss_pred             ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence            6666667998754  3699999999999999999999999999999999999999999886 799999999999999743


Q ss_pred             c---ceEEEEEcCCCCeEEEEEeCCCeEEEeecCccc
Q 003579          599 V---SITALSLSPNMDVLATAHVDQNGVYLWVNRCMF  632 (809)
Q Consensus       599 ~---~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~  632 (809)
                      .   .|.+++|+||+++|++++..+ +|+++.+....
T Consensus       216 ~~~~~IySL~Fs~ds~~L~~sS~Te-TVHiFKL~~~~  251 (391)
T KOG2110|consen  216 TYPVSIYSLSFSPDSQFLAASSNTE-TVHIFKLEKVS  251 (391)
T ss_pred             ceeeEEEEEEECCCCCeEEEecCCC-eEEEEEecccc
Confidence            3   399999999999999999888 89999987555

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=2.7e-16  Score=169.74  Aligned_cols=290  Identities=19%  Similarity=0.321  Sum_probs=208.4

Q ss_pred             cEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecc--cccceEEEEEecCC--CEEEEEcCCCcEEEEEeeCCC
Q 003579          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFANE--PVLMSASADNSIKMWIFDTTD  301 (809)
Q Consensus       226 ~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~--h~~~V~~l~~~~~~--~~l~s~s~d~~i~vw~~~~~~  301 (809)
                      +...+.|+|-.. .++++...-.|++||.+.++.+..+..+  ....|+.+.+..+.  .++++++.||.||||+--...
T Consensus      1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            456677888766 7888887789999999999998877632  24579999998744  489999999999999633222


Q ss_pred             -CCceeEEeccCCC-------CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhcc
Q 003579          302 -GDPRLLRFRSGHS-------APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (809)
Q Consensus       302 -~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (809)
                       ..++++....+-+       +.=.-+.|.....+|+++|.-+.|++||.........+..                   
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~------------------- 1205 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY------------------- 1205 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------------------
Confidence             4445554333221       1113455666556777777788899999876655444322                   


Q ss_pred             CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 003579          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFN  452 (809)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~  452 (809)
                                                                      +....++++.-+. .|+.+++|..||.|++||
T Consensus      1206 ------------------------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1206 ------------------------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred             ------------------------------------------------CCCccceeecccccCCceEEEeecCCceEEee
Confidence                                                            1224555554433 479999999999999999


Q ss_pred             CCCCceeeeeeCcccccccCcccc--EEEEEEcCCCC-EEEEEeCcCeEEEEECCCCceeeee------ecCCCeEEEEE
Q 003579          453 LQSGISRGSYLDMSERSNYAHNGE--VVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRW------EVGCSLVKIVY  523 (809)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~i~~~~~  523 (809)
                      .+.........     ....|+..  |..+.+.+.|- .|++|+.||.|++||++.......+      +.++..+++..
T Consensus      1238 ~R~a~~ds~v~-----~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1238 RRMAPPDSLVC-----VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred             cccCCccccce-----eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence            87654421111     12377776  99999988764 5999999999999999874222221      22346999999


Q ss_pred             eeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-------CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCcc
Q 003579          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (809)
Q Consensus       524 s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~-------h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~  590 (809)
                      |++...+|+|+. +.|.||++... .+..++.       ..+.+.+++|+|.--.||.|+.|.+|.||..+.++
T Consensus      1313 H~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1313 HEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            999999999998 99999998743 3333222       23568999999998899999999999999877553

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=4.4e-16  Score=166.71  Aligned_cols=285  Identities=14%  Similarity=0.177  Sum_probs=202.8

Q ss_pred             CcEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCC--ceeEEeccCCCCCCeeEEEe
Q 003579          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRFY  323 (809)
Q Consensus       247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v~~i~~~  323 (809)
                      +.+.+|+++......... .-...|.++.|+|..+ +++.|..+|+|.+||+......  ..+-.....|..+++.+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            479999998873222222 4678899999999654 7777888999999998877552  23334456789999999998


Q ss_pred             cCC--CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCce
Q 003579          324 ANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (809)
Q Consensus       324 ~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  401 (809)
                      .+.  .-+++++.||.|..|+++.-....+........+                                         
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~-----------------------------------------  339 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH-----------------------------------------  339 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccc-----------------------------------------
Confidence            744  4599999999999998765444322211100000                                         


Q ss_pred             EEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEE
Q 003579          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV  480 (809)
Q Consensus       402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  480 (809)
                                     ..........++++.|.+ +-+.+++|+..|.|..-+-+..................|.+.|..+
T Consensus       340 ---------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v  404 (555)
T KOG1587|consen  340 ---------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV  404 (555)
T ss_pred             ---------------cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence                           000011225778888887 5578999999999988555444333311111111234789999999


Q ss_pred             EEcCCCCEEEEEeCcCeEEEEECC-CCceeeeeecC-CCeEEEEEeeCC-CEEEEEeCCCeEEEEEcCCC--eEEEEEec
Q 003579          481 ACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL--RMVRKFEG  555 (809)
Q Consensus       481 ~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d~~I~v~d~~~~--~~~~~~~~  555 (809)
                      .++|-+..++..+.|.++++|... ...++..+..+ ..++.++|||-. ..+|++..||.+.+||+...  +++.+..-
T Consensus       405 ~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~  484 (555)
T KOG1587|consen  405 SRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV  484 (555)
T ss_pred             ecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc
Confidence            999988666655559999999987 66666666655 459999999965 46777788999999998643  45555555


Q ss_pred             CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579          556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       556 h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~  588 (809)
                      +....+.+.|+++|+.|+.|...|++.+|++..
T Consensus       485 ~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  485 CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            667778888999999999999999999999964

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2.7e-16  Score=169.69  Aligned_cols=291  Identities=15%  Similarity=0.224  Sum_probs=209.1

Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCC---CCCEEEEEEcC--CCCEEEEEeCCCeEEEEEeeCC
Q 003579          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYD  213 (809)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~---~~~I~~l~~sp--~~~~la~g~~dg~i~iwd~~~~  213 (809)
                      ....+.+||-.  ..++++...-.|++||.+.++.+..|..+   ...|+.+.+-.  |..++.+|+.||.|+||+--..
T Consensus      1066 ~pk~~~~hpf~--p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFE--PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCceeeecCCC--ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            34566788877  78888887788999999999998888654   46788888865  4468999999999999974322


Q ss_pred             -----eEEEEEec------cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-CCC
Q 003579          214 -----EELVTFTH------SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEP  281 (809)
Q Consensus       214 -----~~~~~~~~------~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-~~~  281 (809)
                           +.+..+..      ...+.=.-+.|..... +|.+++.-..|+|||.........+..+....|+++.-.. .|+
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence                 23332221      1011114456766655 4445555789999999999988888867777788887654 468


Q ss_pred             EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC--CeeEEEecCCC-EEEEEECCCCEEEEEeeecccceecchhhHH
Q 003579          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVA  358 (809)
Q Consensus       282 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  358 (809)
                      .++.|-.||+|++||.+..... ..+.....|...  |..+.+-+.|- .|++|+.||.|++||++.......+.     
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~----- 1296 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT----- 1296 (1387)
T ss_pred             eEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----
Confidence            9999999999999998876544 345555678877  99999988654 59999999999999987531100000     


Q ss_pred             HHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCE
Q 003579          359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  438 (809)
Q Consensus       359 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~  438 (809)
                                                                                            .+        
T Consensus      1297 ----------------------------------------------------------------------iv-------- 1298 (1387)
T KOG1517|consen 1297 ----------------------------------------------------------------------IV-------- 1298 (1387)
T ss_pred             ----------------------------------------------------------------------ee--------
Confidence                                                                                  00        


Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec----
Q 003579          439 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV----  514 (809)
Q Consensus       439 l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----  514 (809)
                                .-|                    .-.+..+++.+++....+++|+. +.|+||++...++......    
T Consensus      1299 ----------~~~--------------------~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1299 ----------AHW--------------------EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred             ----------ecc--------------------ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccc
Confidence                      000                    11125788888888888888888 8899998775443222111    


Q ss_pred             ---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579          515 ---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (809)
Q Consensus       515 ---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~  547 (809)
                         ...+.+++|||..-++|+|+.|..|.||.....
T Consensus      1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence               167799999999999999999999999987654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.1e-16  Score=158.87  Aligned_cols=226  Identities=19%  Similarity=0.279  Sum_probs=162.7

Q ss_pred             cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec--CCCEEEEEcCCCcEEEEEeeC
Q 003579          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDT  299 (809)
Q Consensus       222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~d~~i~vw~~~~  299 (809)
                      +|.+.|.|+.|+.+|. +|++|+.|-.+.|||.-..++++.+..+|...|.++.|.|  +.+++++|..|..|+++|++.
T Consensus        48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             cccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            4589999999999999 9999999999999999999999999999999999999999  456999999999999999985


Q ss_pred             CC------CCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhc
Q 003579          300 TD------GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  372 (809)
Q Consensus       300 ~~------~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (809)
                      ..      +.....+....|...|..++-.|++ +.+.+++.||+++-+|++.......-....                
T Consensus       127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~----------------  190 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP----------------  190 (758)
T ss_pred             ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc----------------
Confidence            32      2234455667899999999999988 788999999999999998754322110000                


Q ss_pred             cCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 003579          373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERF  451 (809)
Q Consensus       373 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~  451 (809)
                                                                ..+.......-...+++++|.. .++++|+++-..++|
T Consensus       191 ------------------------------------------~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLY  228 (758)
T KOG1310|consen  191 ------------------------------------------SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLY  228 (758)
T ss_pred             ------------------------------------------HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhh
Confidence                                                      0000000111467788999954 789999999999999


Q ss_pred             ECCCC--------ce----------eeeeeCcccccccC-cc---ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC
Q 003579          452 NLQSG--------IS----------RGSYLDMSERSNYA-HN---GEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  506 (809)
Q Consensus       452 ~~~~~--------~~----------~~~~~~~~~~~~~~-h~---~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  506 (809)
                      |.+..        ..          ...|.........+ -.   ..++-++|+|+|.-|+..-....|+++|+..+
T Consensus       229 D~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  229 DRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             hhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            94211        10          11111000000001 01   12567889999977776666678999987654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.74  E-value=6.5e-15  Score=154.04  Aligned_cols=327  Identities=13%  Similarity=0.084  Sum_probs=208.1

Q ss_pred             EEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEE
Q 003579          107 LSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISS  186 (809)
Q Consensus       107 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~  186 (809)
                      ++-..+|.|.|.|..+.+.    +.++......-....++|++  +++++++.||.|.++|+.+++.+.+++. .....+
T Consensus        10 V~~~~~~~v~viD~~t~~~----~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~   82 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKV----VARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG   82 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SE----EEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred             EEecCCCEEEEEECCCCeE----EEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence            4455689999999999887    77887655544556789999  8899999999999999999999999986 455788


Q ss_pred             EEEcCCCCEEEEEe-CCCeEEEEEeeCCeEEEEEecc------CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee
Q 003579          187 CVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHS------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (809)
Q Consensus       187 l~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~------~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~  259 (809)
                      +++|+||++++++. ..+.+.++|.++.+.+..+...      ....+.++..++....++++--..+.|.+.|....+.
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            99999999999875 5799999999999999888643      1346888888888874555555668999999877654


Q ss_pred             eeeeecccccceEEEEEecCCCEEEEE-cCCCcEEEEEeeCCCCCceeEEec----cCCCCCCeeEEEecCCCEEEEEEC
Q 003579          260 QSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSAGQ  334 (809)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~~~  334 (809)
                      +...............|.|++++++.+ ..++.|-++|....    .+....    ..|..+...+ .+|....+...+.
T Consensus       163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~----k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~  237 (369)
T PF02239_consen  163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG----KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSG  237 (369)
T ss_dssp             EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEB
T ss_pred             cceeeecccccccccccCcccceeeecccccceeEEEeeccc----eEEEEeeccccccccccccc-cCCCcceEEeecc
Confidence            433222345567789999999977664 55678888875543    222211    1233333322 2232211111111


Q ss_pred             CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecc
Q 003579          335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  414 (809)
Q Consensus       335 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  414 (809)
                      .+.                                                                             
T Consensus       238 ~~~-----------------------------------------------------------------------------  240 (369)
T PF02239_consen  238 LGY-----------------------------------------------------------------------------  240 (369)
T ss_dssp             SSS-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            111                                                                             


Q ss_pred             eeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE--
Q 003579          415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--  492 (809)
Q Consensus       415 ~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--  492 (809)
                                             +.+..-..+.+.+|+..+.+..+.+.        ...+. ..+..+|+++++...  
T Consensus       241 -----------------------~~~~~ig~~~v~v~d~~~wkvv~~I~--------~~G~g-lFi~thP~s~~vwvd~~  288 (369)
T PF02239_consen  241 -----------------------FAIPLIGTDPVSVHDDYAWKVVKTIP--------TQGGG-LFIKTHPDSRYVWVDTF  288 (369)
T ss_dssp             -----------------------SEEEEEE--TTT-STTTBTSEEEEEE---------SSSS---EE--TT-SEEEEE-T
T ss_pred             -----------------------eecccccCCccccchhhcCeEEEEEE--------CCCCc-ceeecCCCCccEEeecc
Confidence                                   11111111233355666666666654        33344 778889999999988  


Q ss_pred             --eCcCeEEEEECCCCceeeeeecCC--CeEEEEEeeCCCEEEEEeC--CCeEEEEEcCCCeEEEEEe
Q 003579          493 --GYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFE  554 (809)
Q Consensus       493 --~~dg~i~iwd~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~--d~~I~v~d~~~~~~~~~~~  554 (809)
                        ...+.|.++|.++.+....+....  .+..+.|+++|+.+.++..  ++.|.+||..+.+.+.++.
T Consensus       289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence              456899999999998888876554  4999999999997766644  3479999999999998887

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.2e-17  Score=163.97  Aligned_cols=293  Identities=20%  Similarity=0.326  Sum_probs=223.1

Q ss_pred             EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC--CCEEEEEcCCCcEEEE
Q 003579          218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMW  295 (809)
Q Consensus       218 ~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~d~~i~vw  295 (809)
                      .+.. |.+.|..+.|...|. .|++|+.|..|.+||+..++....+..+|...|....|.|.  ...+++++.||.+++=
T Consensus       137 kL~~-H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  137 KLNK-HKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             cccC-CCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            3444 489999999999999 99999999999999999999988888899999999999884  4589999999999998


Q ss_pred             EeeCCCCCceeEEeccCCCCCCeeEEEecC-CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579          296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (809)
Q Consensus       296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (809)
                      .+...... .-......|.++|..++..|+ -..|++++.|+.+.-+|++.+.....+..                    
T Consensus       215 ~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c--------------------  273 (559)
T KOG1334|consen  215 EILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC--------------------  273 (559)
T ss_pred             eeccccce-ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee--------------------
Confidence            76654322 223455689999999999994 46788999999999999876543222110                    


Q ss_pred             ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (809)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~  454 (809)
                                           -                                                          
T Consensus       274 ---------------------r----------------------------------------------------------  274 (559)
T KOG1334|consen  274 ---------------------R----------------------------------------------------------  274 (559)
T ss_pred             ---------------------e----------------------------------------------------------
Confidence                                 0                                                          


Q ss_pred             CCceeeeeeCcccccccCccc---cEEEEEEcCCCC-EEEEEeCcCeEEEEECCCCcee------eee-------ecCCC
Q 003579          455 SGISRGSYLDMSERSNYAHNG---EVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLK------SRW-------EVGCS  517 (809)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~------~~~-------~~~~~  517 (809)
                                      ..+..   ....++.+|.+. .+++++.|..+++||...-...      ..+       .....
T Consensus       275 ----------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~  338 (559)
T KOG1334|consen  275 ----------------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVN  338 (559)
T ss_pred             ----------------ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccc
Confidence                            01111   345666677654 6777788888888876532111      111       22367


Q ss_pred             eEEEEEeeCCCEEEEEeCCCeEEEEEcCC--C----------eEEE-EEecCCCC--eeeEE-ECCCCCEEEEEeCCCeE
Q 003579          518 LVKIVYHRVNGLLATVADDLVIRLFDVVA--L----------RMVR-KFEGHTDR--ITDFC-FSEDGKWLLSSGMDGSL  581 (809)
Q Consensus       518 i~~~~~s~~~~~la~~~~d~~I~v~d~~~--~----------~~~~-~~~~h~~~--I~~l~-fspdg~~l~s~s~D~~I  581 (809)
                      |++++|+.++.-+.++..|-.|+++.-.-  +          ..+. .++||...  |..+- |-|...|+++||.=|.|
T Consensus       339 ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI  418 (559)
T KOG1334|consen  339 ITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI  418 (559)
T ss_pred             ceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceE
Confidence            99999998887777777888899995322  2          2233 38899754  55555 47788999999999999


Q ss_pred             EEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          582 RIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       582 ~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      .||+-.+++.|..+.+... |.|+.-+|--..||+++-|. -|+||...
T Consensus       419 FiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~-DVKIWTP~  466 (559)
T KOG1334|consen  419 FIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDH-DVKIWTPL  466 (559)
T ss_pred             EEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCcc-ceeeecCC
Confidence            9999999999998877554 99999999999999999999 59999863

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=2e-14  Score=138.63  Aligned_cols=272  Identities=15%  Similarity=0.243  Sum_probs=196.5

Q ss_pred             cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe---EEEEEC--CeeEEEEccccccEEE
Q 003579           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKR--AHQVATWSRHSAKVNL   98 (809)
Q Consensus        24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---i~vw~~--~~~~~~~~~h~~~V~~   98 (809)
                      ..+..+++.+.-.-.++|.+......+........|--+-|+-..+.++.-.+   +.+.+.  ...+..+. -..+|.+
T Consensus        14 Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~   92 (391)
T KOG2110|consen   14 NQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILA   92 (391)
T ss_pred             ccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEE
Confidence            34455555555555889998875553333334556777778877776666433   666654  33444422 2346889


Q ss_pred             EEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcC-CccccEEEEeCCCCCCEEEEE--eCCCeEEEEeCCCCceEE
Q 003579           99 LLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIVG--SQEGSLQLWNISTKKKLY  175 (809)
Q Consensus        99 l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~~--~~dg~i~lwd~~~~~~~~  175 (809)
                      |...-++|+.+-.+. |.|+|+.+.+.    +.++... ......|+++|+....+++.-  ...|.|.+||..+.+.+.
T Consensus        93 VrmNr~RLvV~Lee~-IyIydI~~Mkl----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~  167 (391)
T KOG2110|consen   93 VRMNRKRLVVCLEES-IYIYDIKDMKL----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN  167 (391)
T ss_pred             EEEccceEEEEEccc-EEEEeccccee----ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence            999999999987544 99999999887    5555544 444457888887744567653  346899999999999999


Q ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEEeeCCeEEEEEeccCC-CcEEEEEEecCCCCEEEEEcCCCcEEEEE
Q 003579          176 EFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSMR-GAVTALAFSSDGQPLLASGASSGVISIWN  253 (809)
Q Consensus       176 ~~~~~~~~I~~l~~sp~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~~-~~V~~l~fs~dg~~~lasg~~dg~I~iwd  253 (809)
                      .+..|.+.+-|++|+++|.+||+++..|+ |||+.+.+|+.+.+|+.+.. ..|.+++|+|+++ +|++.+..++|.+|.
T Consensus       168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFK  246 (391)
T ss_pred             EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEE
Confidence            99999999999999999999999999987 69999999999999997632 4789999999999 888888999999998


Q ss_pred             CCCceee-------------------------------------eeeeccccc--ceEEEEEecCCCEEEEEcCCCcEEE
Q 003579          254 LEKRRLQ-------------------------------------SVIREAHDN--AIISLHFFANEPVLMSASADNSIKM  294 (809)
Q Consensus       254 l~~~~~~-------------------------------------~~~~~~h~~--~V~~l~~~~~~~~l~s~s~d~~i~v  294 (809)
                      ++....-                                     ...+....+  .+..+.-.+..+++..++.||.+..
T Consensus       247 L~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~  326 (391)
T KOG2110|consen  247 LEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYS  326 (391)
T ss_pred             ecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEE
Confidence            8643100                                     000000011  2222222246678888999999999


Q ss_pred             EEeeCCCC
Q 003579          295 WIFDTTDG  302 (809)
Q Consensus       295 w~~~~~~~  302 (809)
                      |.++..++
T Consensus       327 y~l~~~~g  334 (391)
T KOG2110|consen  327 YRLPPKEG  334 (391)
T ss_pred             EEcCCCCC
Confidence            98887643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=1.2e-17  Score=175.59  Aligned_cols=275  Identities=19%  Similarity=0.336  Sum_probs=200.8

Q ss_pred             CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCC
Q 003579          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (809)
Q Consensus       223 ~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~  302 (809)
                      |...|+|+.|...|. ++++|+.|..++||..+++.++...+ +|.+.|+.++.+.+..++++++.|..|++|.+...  
T Consensus       189 H~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--  264 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG--  264 (1113)
T ss_pred             hhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCC--
Confidence            477899999999998 89999999999999999999999999 99999999999999999999999999999977655  


Q ss_pred             CceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579          303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (809)
Q Consensus       303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (809)
                        .++..+.||.+.|++++|+|-.    +.+.||++++||.+-......  .                            
T Consensus       265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~--p----------------------------  308 (1113)
T KOG0644|consen  265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV--P----------------------------  308 (1113)
T ss_pred             --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC--C----------------------------
Confidence              4667778999999999999954    778899999999751100000  0                            


Q ss_pred             cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (809)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (809)
                                                         ++..                                         
T Consensus       309 -----------------------------------rp~~-----------------------------------------  312 (1113)
T KOG0644|consen  309 -----------------------------------RPLK-----------------------------------------  312 (1113)
T ss_pred             -----------------------------------CCCC-----------------------------------------
Confidence                                               0000                                         


Q ss_pred             eCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeC-CCEEEEEeCCCeEEE
Q 003579          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV-NGLLATVADDLVIRL  541 (809)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~~~d~~I~v  541 (809)
                              .....-+.++.+...+..++|++.|+.-..|.+.......     ..+.-+..+.+ +.+.+++-.+..+.+
T Consensus       313 --------~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~v  379 (1113)
T KOG0644|consen  313 --------FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCV  379 (1113)
T ss_pred             --------cccccceeeeeccccccccccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeee
Confidence                    0011222333333444445555555555544433111000     00000000001 134555666788999


Q ss_pred             EEcCCCeEEEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCccEEEEee-eCcceEEEEEcCCCCeEEEEEeC
Q 003579          542 FDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVD  619 (809)
Q Consensus       542 ~d~~~~~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~~~~-~~~~v~~l~~spdg~~lat~~~d  619 (809)
                      |++.++..++.+.+|...+..+.++|-+ +...+++.||...|||+-.|.+++.+. .|..+..-+||+||..++....-
T Consensus       380 wnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~h  459 (1113)
T KOG0644|consen  380 WNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDH  459 (1113)
T ss_pred             eecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCC
Confidence            9999999999999999999999999955 555699999999999999999887765 45668899999999988877655


Q ss_pred             CCeEEEee
Q 003579          620 QNGVYLWV  627 (809)
Q Consensus       620 ~~~i~lW~  627 (809)
                      | .++|..
T Consensus       460 g-ql~i~g  466 (1113)
T KOG0644|consen  460 G-QLYILG  466 (1113)
T ss_pred             C-ceEEec
Confidence            5 577774

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.6e-15  Score=143.93  Aligned_cols=305  Identities=18%  Similarity=0.252  Sum_probs=199.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc---
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---  257 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~---  257 (809)
                      ...+..++|++.-..+|++..|-.|++||-.. +....++...+..|+|++|.|.+...|++|+.. -|.+|.....   
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            34577889999877889999999999999765 666667666677899999999987789999865 4999976532   


Q ss_pred             -ee--------eeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC
Q 003579          258 -RL--------QSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (809)
Q Consensus       258 -~~--------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  327 (809)
                       +.        ...++.....+|++++|.+||..+++++. |.+|.+||.+.+...+  +.  ..-.+.+.-+.|+|||.
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--L~--~~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--LI--PKGLGGFSLLKWSPDGD  251 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--cc--ccCCCceeeEEEcCCCC
Confidence             11        11122112268999999999999999886 6889999988875433  22  23345688999999999


Q ss_pred             EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEe
Q 003579          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (809)
Q Consensus       328 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (809)
                      +|+.+.-|+..++|...+.-                                                          ..
T Consensus       252 ~lfaAt~davfrlw~e~q~w----------------------------------------------------------t~  273 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSW----------------------------------------------------------TK  273 (445)
T ss_pred             EEEEecccceeeeehhcccc----------------------------------------------------------ee
Confidence            99999999999999643221                                                          11


Q ss_pred             eeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC
Q 003579          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (809)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  487 (809)
                      .     ++.+     ..+.|...+|+|||++++...... -                           .+.++.|+....
T Consensus       274 e-----rw~l-----gsgrvqtacWspcGsfLLf~~sgs-p---------------------------~lysl~f~~~~~  315 (445)
T KOG2139|consen  274 E-----RWIL-----GSGRVQTACWSPCGSFLLFACSGS-P---------------------------RLYSLTFDGEDS  315 (445)
T ss_pred             c-----ceec-----cCCceeeeeecCCCCEEEEEEcCC-c---------------------------eEEEEeecCCCc
Confidence            1     1111     125899999999999998775432 2                           233344432221


Q ss_pred             EEE-EEeCcCeEEEEECCCCceee-eeecCCCeEEEEEeeCCCEEEEEeCCC--------eEEEEEcCCCeEEEEE-ecC
Q 003579          488 LMI-SAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADDL--------VIRLFDVVALRMVRKF-EGH  556 (809)
Q Consensus       488 ~l~-s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~d~--------~I~v~d~~~~~~~~~~-~~h  556 (809)
                      .+. .++....+-+-|+..-.... .....+++.+++|.|.|.++|+....+        .|.+||....-.+.-. -|-
T Consensus       316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~  395 (445)
T KOG2139|consen  316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGM  395 (445)
T ss_pred             cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccc
Confidence            111 22222223333433211110 111247889999999999999986644        3566776543332221 111


Q ss_pred             --CCCeeeEEECC---CCCEEEEEeCCCeEEEEEcC
Q 003579          557 --TDRITDFCFSE---DGKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       557 --~~~I~~l~fsp---dg~~l~s~s~D~~I~vwd~~  587 (809)
                        ...-..++|+|   +|++|..+=.-|.+.-|++.
T Consensus       396 i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  396 IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence              11244566766   56777777677777777654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=1.8e-14  Score=136.17  Aligned_cols=229  Identities=15%  Similarity=0.277  Sum_probs=166.8

Q ss_pred             EcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCC--CCcEEEEEeCCeEEEEECCe--------EEEEECCee--EEEEc
Q 003579           23 RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP--KKIRALASYRDYTFAAYGNH--------IAVVKRAHQ--VATWS   90 (809)
Q Consensus        23 ~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~--~~I~~la~~~~~~~~a~g~~--------i~vw~~~~~--~~~~~   90 (809)
                      ...+..-.++..+.-++||+++-.+.......+.  -.+.-|-+--+...+..|+.        +.|||.-++  +.++ 
T Consensus        13 ~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el-   91 (346)
T KOG2111|consen   13 FNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL-   91 (346)
T ss_pred             EccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEE-
Confidence            3345555666677889999998754433322222  33444444444444444433        999995443  3333 


Q ss_pred             cccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEE-EeCCCeEEEEeCC
Q 003579           91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV-GSQEGSLQLWNIS  169 (809)
Q Consensus        91 ~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~-~~~dg~i~lwd~~  169 (809)
                      .-..+|.+|....++|+.+- ++.|.||...+.-..   +..+.......-.|++.|......|+. |-.-|.|+|-|+.
T Consensus        92 ~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~  167 (346)
T KOG2111|consen   92 SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLA  167 (346)
T ss_pred             EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhh
Confidence            35678999999999999997 889999999854332   334433333333666767663233443 4566999999997


Q ss_pred             CCce--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEEeeCCeEEEEEeccC-CCcEEEEEEecCCCCEEEEEcC
Q 003579          170 TKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGAS  245 (809)
Q Consensus       170 ~~~~--~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~-~~~V~~l~fs~dg~~~lasg~~  245 (809)
                      ..+.  ...++.|.+.|.|++.+-+|.+||+++..|+ |||||..+|+.+.++..+. ...|.+|+|||++. +||+++.
T Consensus       168 ~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSd  246 (346)
T KOG2111|consen  168 STKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSD  246 (346)
T ss_pred             hcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcC
Confidence            6655  5778999999999999999999999999987 7999999999999998653 35899999999999 9999999


Q ss_pred             CCcEEEEECCCc
Q 003579          246 SGVISIWNLEKR  257 (809)
Q Consensus       246 dg~I~iwdl~~~  257 (809)
                      .|+|.|+.++..
T Consensus       247 KgTlHiF~l~~~  258 (346)
T KOG2111|consen  247 KGTLHIFSLRDT  258 (346)
T ss_pred             CCeEEEEEeecC
Confidence            999999998764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=1.2e-15  Score=167.37  Aligned_cols=302  Identities=20%  Similarity=0.256  Sum_probs=211.6

Q ss_pred             EEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce-------eeeeeecccccceEEEEEecCC
Q 003579          208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-------LQSVIREAHDNAIISLHFFANE  280 (809)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~-------~~~~~~~~h~~~V~~l~~~~~~  280 (809)
                      |+.+ |..+..+..| ...|..++.+++...++++|+.||+|++||+..-.       ...+.. ...+.+.++...+++
T Consensus      1034 W~p~-G~lVAhL~Eh-s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEH-SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNG 1110 (1431)
T ss_pred             CCcc-ceEeehhhhc-cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCC
Confidence            6654 7777777766 67788888887764599999999999999986431       112222 246789999999999


Q ss_pred             CEEEEEcCCCcEEEEEeeCCCCCc---eeEEeccCCCC-CCee-EEEec-CCC-EEEEEECCCCEEEEEeeecccceecc
Q 003579          281 PVLMSASADNSIKMWIFDTTDGDP---RLLRFRSGHSA-PPLC-IRFYA-NGR-HILSAGQDRAFRLFSVIQDQQSRELS  353 (809)
Q Consensus       281 ~~l~s~s~d~~i~vw~~~~~~~~~---~~~~~~~~h~~-~v~~-i~~~~-~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~  353 (809)
                      ..+|.++.||.|++.+++......   ...+....+.. .+.+ -+|.. .+. .++.+..-+.+..||++.......+.
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence            999999999999999988742221   12222223322 2222 23332 333 67788888899999987654332221


Q ss_pred             hhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc
Q 003579          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  433 (809)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s  433 (809)
                      .                                                                  ....+.|++++++
T Consensus      1191 ~------------------------------------------------------------------~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1191 N------------------------------------------------------------------QLRHGLVTSIVID 1204 (1431)
T ss_pred             c------------------------------------------------------------------CccccceeEEEec
Confidence            1                                                                  0123889999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC---CEEEEEe--CcCeEEEEECCCCce
Q 003579          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN---TLMISAG--YHGDIKVWDFKGRDL  508 (809)
Q Consensus       434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~--~dg~i~iwd~~~~~~  508 (809)
                      |.++++++|++.|.+.+||++-+.......       .++..+++.+..+|-.   ...++++  ..+.|.+|++.+|..
T Consensus      1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             CCceEEEEecCCceEEEEEeecCceeeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            999999999999999999999988888775       3566888888887743   4555554  467899999999866


Q ss_pred             eeeeecC---------C-----------CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEE------------------
Q 003579          509 KSRWEVG---------C-----------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV------------------  550 (809)
Q Consensus       509 ~~~~~~~---------~-----------~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~------------------  550 (809)
                      ...+-..         .           .....++...+..+.+|+.|..||.||....+..                  
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence            6555322         0           1122333444678999999999999997542211                  


Q ss_pred             -----------EE---------------------------EecCCCCeeeEEECCC-CCEEEEEeCCCeEEEEE
Q 003579          551 -----------RK---------------------------FEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       551 -----------~~---------------------------~~~h~~~I~~l~fspd-g~~l~s~s~D~~I~vwd  585 (809)
                                 ..                           -..|..+|+++++... -.+|++++.||.|+||.
T Consensus      1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                       00                           0137788999988664 35889999999999993

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=1.3e-15  Score=167.30  Aligned_cols=266  Identities=17%  Similarity=0.201  Sum_probs=183.7

Q ss_pred             EE-CCeeEEEEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCccccc---eeeeEEcCCccccEEEEeCCCCCC
Q 003579           80 VK-RAHQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLA---PVGHVKLDDKFTPTCIMHPDTYLN  152 (809)
Q Consensus        80 w~-~~~~~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~  152 (809)
                      |+ +|..++++..|+..|..++.   ++.+++|||.||+|++||...-.....   ...++.........+.+-+.+  +
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--D 1111 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--C
Confidence            55 46778889999999998886   468999999999999999876544311   122233233333444455666  7


Q ss_pred             EEEEEeCCCeEEEEeCCCC--c-----eEEEEcCC-CCCEEEE-EEcC-CCC-EEEEEeCCCeEEEEEeeCCeEEEEEec
Q 003579          153 KVIVGSQEGSLQLWNISTK--K-----KLYEFKGW-GSSISSC-VSSP-ALD-VVAVGCSDGKIHVHNVRYDEELVTFTH  221 (809)
Q Consensus       153 ~l~~~~~dg~i~lwd~~~~--~-----~~~~~~~~-~~~I~~l-~~sp-~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~  221 (809)
                      .+|+++.||.|++.++.-.  +     ..+....+ .+.+..| +|.. ++. .|+.+...+.|..||+++...+.+++.
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            8999999999999988652  1     11112222 2334443 4433 233 788888899999999998776655553


Q ss_pred             c-CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC---CEEEEEc--CCCcEEEE
Q 003579          222 S-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSAS--ADNSIKMW  295 (809)
Q Consensus       222 ~-~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s--~d~~i~vw  295 (809)
                      . ..|.|++++.+|.+. .+++|+..|.+.+||++=+.++......+..++..+..+|-.   ...++++  ..+.|.+|
T Consensus      1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             CccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            2 247899999999999 999999999999999999998888887777888888877643   3444444  47899999


Q ss_pred             EeeCCCCCceeEEe---------c------cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccc
Q 003579          296 IFDTTDGDPRLLRF---------R------SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (809)
Q Consensus       296 ~~~~~~~~~~~~~~---------~------~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~  348 (809)
                      ++..+.+...+...         .      ..+.-......+...+..+++|+.|..|+.||......
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            98876432221111         0      01111222333444566899999999999999866543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.7e-15  Score=147.39  Aligned_cols=192  Identities=21%  Similarity=0.267  Sum_probs=154.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCc
Q 003579          428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  507 (809)
Q Consensus       428 ~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  507 (809)
                      .+++++.+|..+++|..||.+++|+..+........        .|.+.|.++.|+||+++|++.+.| ..+||+..++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence            789999999999999999999999988777666554        899999999999999999999999 99999999997


Q ss_pred             eeeeeec---CCCeEEEEEeeCC-----CEEEEEeCCCeEEEEEcCCCeE-----EEEEecCCCCeeeEEECCCCCEEEE
Q 003579          508 LKSRWEV---GCSLVKIVYHRVN-----GLLATVADDLVIRLFDVVALRM-----VRKFEGHTDRITDFCFSEDGKWLLS  574 (809)
Q Consensus       508 ~~~~~~~---~~~i~~~~~s~~~-----~~la~~~~d~~I~v~d~~~~~~-----~~~~~~h~~~I~~l~fspdg~~l~s  574 (809)
                      .+.....   ......+.|+.|+     .+.+....-+.|+.||+..++-     .++...-...|++++.|+||++++.
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            6666542   2566778888887     3333444567788877654322     1122223357999999999999999


Q ss_pred             EeCCCeEEEEEcCCccEEEEeee-Cc-ceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          575 SGMDGSLRIWDVILARQIDAIHV-DV-SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       575 ~s~D~~I~vwd~~~~~~i~~~~~-~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      |+.||.|.|++..+-+.+..++. |. -|+.+.|+||.+++++.+.+. ...|-.+.
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-~~~v~~l~  354 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-EAAVTKLA  354 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-ceeEEEEe
Confidence            99999999999998888877652 33 499999999999999988877 47766654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.7e-15  Score=146.09  Aligned_cols=303  Identities=14%  Similarity=0.148  Sum_probs=218.3

Q ss_pred             EEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCC------CCceEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 003579          133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS------TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKI  205 (809)
Q Consensus       133 ~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~------~~~~~~~~~-~~~~~I~~l~~sp~~~~la~g~~dg~i  205 (809)
                      +..|.+++...-|+.++  ..|++|+.|..+++|++.      +.|++.... .|.+.|.|++|......|.+|..+++|
T Consensus        52 ~~~H~GCiNAlqFS~N~--~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   52 VREHTGCINALQFSHND--RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhccccceeeeccCC--eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            34466777777898888  899999999999999985      456666554 456899999999999999999999999


Q ss_pred             EEEEeeCCeEEEEEecc-CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce-eeeee-ecccccceEEEEEecCCC-
Q 003579          206 HVHNVRYDEELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVI-REAHDNAIISLHFFANEP-  281 (809)
Q Consensus       206 ~iwd~~~~~~~~~~~~~-~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~-~~~~~-~~~h~~~V~~l~~~~~~~-  281 (809)
                      .++|+++.+.+..+... ..+.|+.+..+|... ++++.+.+|.|.+||.+... ....+ ..........+.|.|..+ 
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            99999999999888753 246899999999877 89999999999999998765 22222 112345678899999876 


Q ss_pred             EEEEEcCCCcEEEEEeeCCCCCceeEEeccCC------CCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchh
Q 003579          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGH------SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR  355 (809)
Q Consensus       282 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h------~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  355 (809)
                      +|++++..+-+.+||......   .+..+.+.      ...-.++.|+|+|..+++--....-.+||+....+..-    
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~---~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~----  281 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQAR---PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL----  281 (609)
T ss_pred             eEEeccccCCCCceeeccccc---hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE----
Confidence            667778888899999876542   22111111      22236788999999998877666667777765332110    


Q ss_pred             hHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCC
Q 003579          356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC  435 (809)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~  435 (809)
                                            .++..               ..+.                    -+...+.+++|-.+
T Consensus       282 ----------------------k~D~N---------------~~GY--------------------~N~~T~KS~~F~~D  304 (609)
T KOG4227|consen  282 ----------------------KSDHN---------------PNGY--------------------CNIKTIKSMTFIDD  304 (609)
T ss_pred             ----------------------eccCC---------------CCcc--------------------eeeeeeeeeeeecc
Confidence                                  00000               0000                    01135666777655


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeee---------------eeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          436 GNFAVLGTAGGWIERFNLQSGISRGS---------------YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       436 g~~l~~g~~~g~i~i~~~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                      -. +++|+.+-.|++|.+.......-               +.......+.+|..-+..+.|+|.+.+|++.+-...+++
T Consensus       305 ~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl  383 (609)
T KOG4227|consen  305 YT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKL  383 (609)
T ss_pred             ee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheec
Confidence            44 88888888999998754322211               112222345799999999999999999999999999999


Q ss_pred             EEC
Q 003579          501 WDF  503 (809)
Q Consensus       501 wd~  503 (809)
                      |.-
T Consensus       384 WS~  386 (609)
T KOG4227|consen  384 WSD  386 (609)
T ss_pred             ccc
Confidence            974

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=1.7e-15  Score=151.93  Aligned_cols=263  Identities=19%  Similarity=0.246  Sum_probs=186.9

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-------CCCEEEEEcCCCcEEEEE
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-------NEPVLMSASADNSIKMWI  296 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-------~~~~l~s~s~d~~i~vw~  296 (809)
                      ...+.|+.|+.+.. ++.+++ |..+.+|.-.+......+....+.-.+.+..-+       +...++.++.||.+.+.+
T Consensus        14 ~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   14 SEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            55678999998877 565555 555555543333222222211111111111111       223788888899888773


Q ss_pred             eeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (809)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (809)
                      -     ..+..+....|.+.+.+-+|+|||.-|+++|.||.|++|+-...- ...+                        
T Consensus        92 k-----~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-RStl------------------------  141 (737)
T KOG1524|consen   92 K-----SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-RSTV------------------------  141 (737)
T ss_pred             c-----cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-HHHH------------------------
Confidence            2     226677788999999999999999999999999999999842211 0000                        


Q ss_pred             eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003579          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (809)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~  456 (809)
                                                                  ......|.|++|.|+.+.++.+ ..|++.+=.++..
T Consensus       142 --------------------------------------------~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n  176 (737)
T KOG1524|consen  142 --------------------------------------------VQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAAN  176 (737)
T ss_pred             --------------------------------------------hhcCceeEEEEECCCCCceEEe-cCCeEEEeecccc
Confidence                                                        1223789999999998877664 4566777777666


Q ss_pred             ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC
Q 003579          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD  536 (809)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d  536 (809)
                      ...-...        +|.+-|.++.|++.+.++++||.|-..++||-....+...-.+..+|++++|.|+ ..+++++.+
T Consensus       177 ~k~i~Wk--------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n  247 (737)
T KOG1524|consen  177 SKIIRWR--------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN  247 (737)
T ss_pred             cceeEEe--------ccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee
Confidence            6555554        9999999999999999999999999999999877777666677799999999999 666766542


Q ss_pred             CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEE
Q 003579          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  584 (809)
Q Consensus       537 ~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vw  584 (809)
                       +.|+           -....+.|..++||+||..++.|...|.+.+=
T Consensus       248 -t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  248 -TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             -eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence             3331           12345789999999999999999888877653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=2.6e-15  Score=160.87  Aligned_cols=274  Identities=18%  Similarity=0.199  Sum_probs=196.3

Q ss_pred             CeEEEEEeeCC-eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee-----eeeeecccccceEEEEE
Q 003579          203 GKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-----QSVIREAHDNAIISLHF  276 (809)
Q Consensus       203 g~i~iwd~~~~-~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~-----~~~~~~~h~~~V~~l~~  276 (809)
                      +.+.+|+++.. .+-..+..  ...|+|+.|+|....+++.|..+|.|.+||++.+..     +......|..+++.+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999876 33344433  688999999999888999999999999999988755     23333578999999999


Q ss_pred             ecCCCE--EEEEcCCCcEEEEEeeCCCCCc--eeEEec------cCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeee
Q 003579          277 FANEPV--LMSASADNSIKMWIFDTTDGDP--RLLRFR------SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       277 ~~~~~~--l~s~s~d~~i~vw~~~~~~~~~--~~~~~~------~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~  345 (809)
                      ..+..-  +++++.||.|..|+++.-....  .++...      ..-...++++.|.+ +-..++.|+.+|.|..-+-..
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            886655  9999999999999877543211  011111      12234688999998 667899999999876533211


Q ss_pred             cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (809)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  425 (809)
                      .....+.                                                            ..........|.+
T Consensus       380 ~~~~~~~------------------------------------------------------------~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  380 YTPAPEV------------------------------------------------------------SYKGHSTFITHIG  399 (555)
T ss_pred             Ccccccc------------------------------------------------------------cccccccccccCc
Confidence            1110000                                                            0011112234568


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEEC
Q 003579          426 AVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF  503 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~  503 (809)
                      .|.++.++|=+..++..+.|.++++|... .......+.        .+...|++++|+|.. ..++++..||.|.+||+
T Consensus       400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~--------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD--------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh--------hccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence            99999999988766666669999999987 444444443        566779999999977 46677778999999999


Q ss_pred             CCCce--eeeeec-CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC
Q 003579          504 KGRDL--KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (809)
Q Consensus       504 ~~~~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~  546 (809)
                      .....  ..+... ....+.+.++++|+.|++|...|.+++|++..
T Consensus       472 l~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  472 LQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             hccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            75533  333322 35667788888899999999999999999853

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=9.8e-15  Score=152.84  Aligned_cols=423  Identities=14%  Similarity=0.121  Sum_probs=271.6

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCC------------CEEEEEeCCCeEEE
Q 003579          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL------------DVVAVGCSDGKIHV  207 (809)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~------------~~la~g~~dg~i~i  207 (809)
                      ....-++|.|   .|+.| ....|.+.|..+.+.++.+.-|...|+.+.|.|..            -+||++.-.|.|.+
T Consensus        18 ~~A~Dw~~~G---LiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   18 RNAADWSPSG---LIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccCccc---eEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            3445588887   45555 45679999999999999999999999999998742            26788888899999


Q ss_pred             EEeeCCeEEEEEeccCCCcEEEEEEec---CCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-CCCEE
Q 003579          208 HNVRYDEELVTFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL  283 (809)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~V~~l~fs~---dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l  283 (809)
                      ||...+..+..+.++ ..++..++|-+   +.+.+|++-.....|.+||..+|+...... .......++.+.| |.+.+
T Consensus        94 ~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHF  171 (1062)
T ss_pred             EEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceE
Confidence            999999888888776 78899999876   444577777778899999999999988877 3344566688877 44455


Q ss_pred             EEEcCCCcEEEEEeeCC---CCCceeEEeccCCCC----------------CC---------eeEEEecCCCEEEEEECC
Q 003579          284 MSASADNSIKMWIFDTT---DGDPRLLRFRSGHSA----------------PP---------LCIRFYANGRHILSAGQD  335 (809)
Q Consensus       284 ~s~s~d~~i~vw~~~~~---~~~~~~~~~~~~h~~----------------~v---------~~i~~~~~~~~l~s~~~d  335 (809)
                      ...+..|.+-+-++-..   ....+..+....|+.                ..         ..++|+|.-+.++.....
T Consensus       172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p  251 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP  251 (1062)
T ss_pred             EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence            55555565555544221   111222222223322                11         124567766666666667


Q ss_pred             CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeec--
Q 003579          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG--  413 (809)
Q Consensus       336 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--  413 (809)
                      +.+.++|++-...........               ...++..+-..    .. ...+.|.-.++.+.+|.-+.....  
T Consensus       252 rellv~dle~~~~l~vvpier---------------~~akfv~vlP~----~~-rd~LfclH~nG~ltirvrk~~~~~f~  311 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIER---------------GGAKFVDVLPD----PR-RDALFCLHSNGRLTIRVRKEEPTEFK  311 (1062)
T ss_pred             cceEEEcchhhceeEEEEecc---------------CCcceeEeccC----CC-cceEEEEecCCeEEEEEeeccCcccc
Confidence            789999987665544332110               00111111111    11 234455556677777765542111  


Q ss_pred             -------------ceeeecCCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeCccc------------
Q 003579          414 -------------EHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSE------------  467 (809)
Q Consensus       414 -------------~~~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~------------  467 (809)
                                   .+.+++...  ..+......|. .+.+++-.++|.+.+|++.+|+..........            
T Consensus       312 ~~~~~l~~dl~~Q~~~vr~m~~--~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~  389 (1062)
T KOG1912|consen  312 KPNASLSMDLGEQVHVVRPMEE--FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLST  389 (1062)
T ss_pred             ccchhhccccccceEEEeechh--cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCce
Confidence                         111111111  11222222333 55666677888899999887654332221000            


Q ss_pred             -----------ccccCccccEEEEEEcC-----------CC-------CEEEEEeCcCeEEEEECCCCceeeeeecC-CC
Q 003579          468 -----------RSNYAHNGEVVGVACDS-----------TN-------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS  517 (809)
Q Consensus       468 -----------~~~~~h~~~v~~l~~~~-----------~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  517 (809)
                                 ....+|....++....|           .+       .+++.|...|+|.++|+.++..-+.+..+ +.
T Consensus       390 ~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~  469 (1062)
T KOG1912|consen  390 KLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSL  469 (1062)
T ss_pred             eehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccc
Confidence                       01235666555555443           22       26788899999999999999888777665 77


Q ss_pred             eEEEEEeeCCCEEEEEeC---------CCeEEEEEcCCCeE--EEEEec-CCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          518 LVKIVYHRVNGLLATVAD---------DLVIRLFDVVALRM--VRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       518 i~~~~~s~~~~~la~~~~---------d~~I~v~d~~~~~~--~~~~~~-h~~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      |.++.|-...+++-.+..         -+.+.+-|+++|..  .+.+++ ...+|..+..|..|+||+..-.|.-+-+||
T Consensus       470 VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd  549 (1062)
T KOG1912|consen  470 VKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWD  549 (1062)
T ss_pred             eeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence            888888876666654433         24577889998843  333333 457899999999999999999999999999


Q ss_pred             cCCcc
Q 003579          586 VILAR  590 (809)
Q Consensus       586 ~~~~~  590 (809)
                      +++-.
T Consensus       550 ~kt~~  554 (1062)
T KOG1912|consen  550 LKTLR  554 (1062)
T ss_pred             hccch
Confidence            86544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.2e-16  Score=158.81  Aligned_cols=318  Identities=14%  Similarity=0.163  Sum_probs=236.3

Q ss_pred             eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC-CCEEEEEcCCCcEEE
Q 003579          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISI  251 (809)
Q Consensus       173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg-~~~lasg~~dg~I~i  251 (809)
                      +...+..|.+.|..+.|...|+.|++|+.|..|.+||...++....+..+|...|....|.|.. ..-+++++.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            4566889999999999999999999999999999999999999999999888888888888852 236888999999998


Q ss_pred             EECCCc-eee-eeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCC---CCeeEEEec-
Q 003579          252 WNLEKR-RLQ-SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYA-  324 (809)
Q Consensus       252 wdl~~~-~~~-~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~-  324 (809)
                      =.+... .+. ......|.++|..++.-|+.+ -|.+++.|+.+.-.|+.......... ....+..   ....++..| 
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCCC
Confidence            876443 222 122237999999999999876 68899999999988877664443333 4444444   567888888 


Q ss_pred             CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEE
Q 003579          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (809)
Q Consensus       325 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (809)
                      +...+++++.|..+++||.+.-.....-  +                   ++..|                         
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n--~-------------------~~~~f-------------------------  326 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENN--G-------------------VLDKF-------------------------  326 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhcccc--c-------------------hhhhc-------------------------
Confidence            4558999999999999997643221100  0                   00000                         


Q ss_pred             EEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee--e---CcccccccCccc--cE
Q 003579          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY--L---DMSERSNYAHNG--EV  477 (809)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~--~---~~~~~~~~~h~~--~v  477 (809)
                             ...+...   .....|++++++.+|.-+++.+.|-.|++|+-.-+......  .   .......++|..  .|
T Consensus       327 -------~p~hl~~---d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV  396 (559)
T KOG1334|consen  327 -------CPHHLVE---DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV  396 (559)
T ss_pred             -------CCccccc---cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence                   0011111   23478999999999999999999999999964333221000  0   111112357754  46


Q ss_pred             EEEEE-cCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579          478 VGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (809)
Q Consensus       478 ~~l~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~  547 (809)
                      .++-| -|...++++|+.-|.|.||+-++++++..++.. .-|+|+.-||--..||+.+-|..|+||-..+.
T Consensus       397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             ceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            67765 577899999999999999999999999888765 57889999999999999999999999976443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.70  E-value=2.3e-15  Score=145.73  Aligned_cols=213  Identities=12%  Similarity=0.141  Sum_probs=174.5

Q ss_pred             eeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEe
Q 003579          416 ILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG  493 (809)
Q Consensus       416 ~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~  493 (809)
                      ......+|.+++..++|+| +.+.+++|+.|..|.+|.+..+.....+. .+...+.+|...|.-++|+|.. +.|++++
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-cceEEEeecceeEEEEeecccchhhHhhcc
Confidence            3455678999999999999 55788999999999999998766554433 2223456999999999999964 6889999


Q ss_pred             CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC-eeeEEECCCCCEE
Q 003579          494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGKWL  572 (809)
Q Consensus       494 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~-I~~l~fspdg~~l  572 (809)
                      .|.+|.+||+.+++.+-++.+...|.++.|+.||.++++.+.|..|||||.++++++.+-.+|.+. -..+.|-.+|..+
T Consensus       152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            999999999999999999998899999999999999999999999999999999999999888753 4456788888844


Q ss_pred             EEEe---CCCeEEEEEcCCc---cEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          573 LSSG---MDGSLRIWDVILA---RQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       573 ~s~s---~D~~I~vwd~~~~---~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      -||-   .+..+.+||-.+-   -....+...+.|.---|.||...+..++.....|+-|.+.
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            4442   5788999986553   2344555666788888999999999888766679988763

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=1.3e-14  Score=137.24  Aligned_cols=166  Identities=11%  Similarity=0.148  Sum_probs=138.8

Q ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe---EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (809)
Q Consensus       175 ~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i  251 (809)
                      +.+.....+|+|.+|++|+..+|++..+..|.||.....+   ...++..| ...|+.++|+|..+ .+++++.|..-++
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~sn-rIvtcs~drnayV   81 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSN-RIVTCSHDRNAYV   81 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCC-ceeEccCCCCccc
Confidence            3444456899999999999999999999999999987654   56666665 88999999999987 7899999999999


Q ss_pred             EEC-CCc--eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579          252 WNL-EKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (809)
Q Consensus       252 wdl-~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  328 (809)
                      |.. ..+  +..-.+. .|+...+++.|+|.++.+++|+.-..|.||-++..+.-+........+...|+++.|+|++-.
T Consensus        82 w~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   82 WTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             cccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence            998 444  3333444 588999999999999999999999999999888765443333444567788999999999999


Q ss_pred             EEEEECCCCEEEEEe
Q 003579          329 ILSAGQDRAFRLFSV  343 (809)
Q Consensus       329 l~s~~~dg~i~~wd~  343 (809)
                      |+.|+.|+..++|+.
T Consensus       161 laaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFSA  175 (361)
T ss_pred             ecccccCcceeEEEE
Confidence            999999999999985

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.68  E-value=1.5e-13  Score=149.60  Aligned_cols=272  Identities=15%  Similarity=0.192  Sum_probs=193.9

Q ss_pred             CCcEEEEEeCCeEEEEECCeEEEEECCee--EE------EEccccccEEEE-EEeCCEEEEEeCCCcEEEEEcCCCcccc
Q 003579           57 KKIRALASYRDYTFAAYGNHIAVVKRAHQ--VA------TWSRHSAKVNLL-LLFGEHILSIDIDGNMFIWAFKGIEENL  127 (809)
Q Consensus        57 ~~I~~la~~~~~~~~a~g~~i~vw~~~~~--~~------~~~~h~~~V~~l-~~~g~~l~s~~~dg~i~vWd~~~~~~~~  127 (809)
                      .+.++.++-.+++++++|..|.+||....  +.      -+..|  .+... ...+.+++++..-+.+.+=+......  
T Consensus         8 ~~l~~~~~~~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~--   83 (967)
T KOG0974|consen    8 GPLNLPQLVSDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEVYVKEASNQII--   83 (967)
T ss_pred             ccccchhhccceeeecCCCceEEeeCCchhHhhhhhhhcccccc--cccccceeccceEEEEEeecceeecchhhhhh--
Confidence            44455555558888899999999986432  11      13445  11111 12466777776655544433222111  


Q ss_pred             ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC----EEEEEEcCCCCEEEEEeCCC
Q 003579          128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS----ISSCVSSPALDVVAVGCSDG  203 (809)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~----I~~l~~sp~~~~la~g~~dg  203 (809)
                         ..   -...+..+-+....  .++++++.++.+.+||.+.+............    ..-+.++++.-++++|+.-+
T Consensus        84 ---~~---~s~wi~g~~l~~e~--k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~  155 (967)
T KOG0974|consen   84 ---ER---FSDWIFGAKLFEEN--KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG  155 (967)
T ss_pred             ---hh---ccccccccchhhhc--ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence               11   11122223334444  67999999999999999888877766543221    12234577777999999999


Q ss_pred             eEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE
Q 003579          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL  283 (809)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  283 (809)
                      .|.+|+....+.-..+.+ |.+.|.++.|+-||+ ++++.+.|.++++|++++++.....--+|+..|..+.|+|+  .+
T Consensus       156 ~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i  231 (967)
T KOG0974|consen  156 EIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI  231 (967)
T ss_pred             cEEEEeccccCCcceecc-cCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence            999999984444344444 599999999999999 99999999999999999998877333489999999999998  89


Q ss_pred             EEEcCCCcEEEEEeeCCCCCceeEEeccCCC-CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (809)
Q Consensus       284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  349 (809)
                      +|++.|.+.++|..+..     .+..+.+|. ..+..+...++...+++++.|+.+++|++......
T Consensus       232 ~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e  293 (967)
T KOG0974|consen  232 ITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE  293 (967)
T ss_pred             EEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence            99999999999965543     344566665 46889999999999999999999999998765443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=9.2e-16  Score=150.65  Aligned_cols=203  Identities=22%  Similarity=0.258  Sum_probs=153.0

Q ss_pred             EEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE
Q 003579          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (809)
Q Consensus       228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~  307 (809)
                      .+++|+.+|. .|++|+.||.+|+|+..+...+.... .|...|.++.|+||++.|++.+.| ..+||+.+......+  
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~--  222 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR--  222 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh--
Confidence            7899999998 99999999999999987777666666 799999999999999999999999 999998877632111  


Q ss_pred             EeccCCCCCCeeEEEecCC---C--EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579          308 RFRSGHSAPPLCIRFYANG---R--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (809)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~---~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (809)
                      .....-......++|..|+   .  .++....-+.++.|++........+.                             
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~-----------------------------  273 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR-----------------------------  273 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-----------------------------
Confidence            1112333455677887766   2  22233344556666654322111000                             


Q ss_pred             cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (809)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (809)
                                                        ..........|+++++|.||+++++|+.+|.|.+|+..+.+.....
T Consensus       274 ----------------------------------~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v  319 (398)
T KOG0771|consen  274 ----------------------------------LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV  319 (398)
T ss_pred             ----------------------------------hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence                                              0000111268999999999999999999999999999998888877


Q ss_pred             eCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC
Q 003579          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (809)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  505 (809)
                      +       ..|...|+++.|+|+.+++++.+.|....+..+.-
T Consensus       320 k-------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  320 K-------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             h-------hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            6       49999999999999999999999998888876543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.8e-15  Score=161.59  Aligned_cols=236  Identities=17%  Similarity=0.189  Sum_probs=164.6

Q ss_pred             CCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC
Q 003579          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (809)
Q Consensus       160 dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg  236 (809)
                      +..|.+||..... .+.+..|...+.+.+|||||+.|+.++.+   ..|++||+.+++.......  .+...+++|+|||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPDG  259 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPDG  259 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCCC
Confidence            4689999985544 56677788899999999999999987653   4799999988764322111  2345578999999


Q ss_pred             CCEEEEEcCCCcEEE--EECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCC
Q 003579          237 QPLLASGASSGVISI--WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH  313 (809)
Q Consensus       237 ~~~lasg~~dg~I~i--wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (809)
                      +.++++.+.+|.+.|  ||+.++... .+. .+...+....|+||++.|+.++ .++...+|+++...+..+.+    ++
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~  333 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPS-QLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GG  333 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeE-eec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cC
Confidence            944444456776555  576666543 344 5667788999999999766554 57899999988765433332    33


Q ss_pred             CCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579          314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (809)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  393 (809)
                      ..  ....|+|||++|+..+.++ +..||+.++.... +..                                       
T Consensus       334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~---------------------------------------  370 (429)
T PRK01742        334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSS---------------------------------------  370 (429)
T ss_pred             CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecC---------------------------------------
Confidence            33  4578999999999887765 5568875543211 000                                       


Q ss_pred             EeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeeeeeCccccccc
Q 003579          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ--SGISRGSYLDMSERSNY  471 (809)
Q Consensus       394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~  471 (809)
                                                  .  .....+.|+|+|++++.++.+|.+.+|.+.  +|.....+.        
T Consensus       371 ----------------------------~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--------  412 (429)
T PRK01742        371 ----------------------------T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--------  412 (429)
T ss_pred             ----------------------------C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--------
Confidence                                        0  112346799999999999999988887753  455555553        


Q ss_pred             CccccEEEEEEcCC
Q 003579          472 AHNGEVVGVACDST  485 (809)
Q Consensus       472 ~h~~~v~~l~~~~~  485 (809)
                      .|.+.+...+|+|-
T Consensus       413 ~~~g~~~~p~wsp~  426 (429)
T PRK01742        413 GSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCCCcccCCC
Confidence            77788888999874

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.66  E-value=2.4e-12  Score=140.47  Aligned_cols=256  Identities=15%  Similarity=0.179  Sum_probs=178.3

Q ss_pred             EEEEEcCCeEEEEEcCccEEEEecCC-CCCCcEEEEEeCCeEEEEECCe-EEEEECCee---------EEEEccccccEE
Q 003579           29 FVTVSVGKAFHIYNCAKLNLVLVGPQ-LPKKIRALASYRDYTFAAYGNH-IAVVKRAHQ---------VATWSRHSAKVN   97 (809)
Q Consensus        29 ~i~~~~~~~i~iwd~~~~~~~~~~~~-~~~~I~~la~~~~~~~~a~g~~-i~vw~~~~~---------~~~~~~h~~~V~   97 (809)
                      ++.++.|-.+.+||+..+.++.-..+ +.-++.    .+.++.-+.+.. |........         ...+..+... .
T Consensus        19 ~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~~~s~wi~g-~   93 (967)
T KOG0974|consen   19 YLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIERFSDWIFG-A   93 (967)
T ss_pred             eeeecCCCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchhhhhhhhccccccc-c
Confidence            45566678899999998765543311 111111    222222222222 222221111         1112222211 2


Q ss_pred             EEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCcc----ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce
Q 003579           98 LLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF----TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK  173 (809)
Q Consensus        98 ~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~  173 (809)
                      .+.+....++.++.++.+-+||...+..    ...+......    ...+..+++.  -++++|+.-+.|.+|+....+.
T Consensus        94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~----~~~i~~~er~~l~~~~~~g~s~~~--~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   94 KLFEENKKIALVTSRNSLLIRDSKNSSV----LSKIQSDERCTLYSSLIIGDSAEE--LYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             chhhhcceEEEEEcCceEEEEecccCce----ehhcCCCceEEEEeEEEEeccCcE--EEEEeccccccEEEEeccccCC
Confidence            2334577888888899999999987765    3333222221    2233356666  6799999999999999874444


Q ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE
Q 003579          174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (809)
Q Consensus       174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd  253 (809)
                      -..+.+|.+.|.++.++-+|+++++.+.|.++++|++++.+.......+|...|..+.|.|+   .+++++.|.+.++|+
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~  244 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWG  244 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEe
Confidence            44689999999999999999999999999999999999998877444556899999999998   589999999999997


Q ss_pred             CCCceeeeeeeccc-ccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579          254 LEKRRLQSVIREAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       254 l~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~  300 (809)
                      .+. ..+..+. .| ...|..++..++...++|++.|+.+++|++...
T Consensus       245 ~~~-~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  245 VNG-TQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ccc-ceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            654 4444666 55 457999999999999999999999999987543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.4e-14  Score=157.17  Aligned_cols=237  Identities=11%  Similarity=0.085  Sum_probs=158.7

Q ss_pred             CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC---CCcEEEEECCCceeeeeeecccccceEEEEEec
Q 003579          202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIREAHDNAIISLHFFA  278 (809)
Q Consensus       202 dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~---dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~  278 (809)
                      +..|.+||..... ...+..+ ...+.+.+|+|||+ .|+..+.   +..|++||+.+++......  ..+....++|+|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~--~~g~~~~~~wSP  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRS-SQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVAS--FRGHNGAPAFSP  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccC-CCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEec--CCCccCceeECC
Confidence            4689999986544 4445444 67899999999999 5665543   2479999998875432221  222344689999


Q ss_pred             CCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE-CCCCEEEEEeeecccceecchhh
Q 003579          279 NEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRH  356 (809)
Q Consensus       279 ~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~  356 (809)
                      ||+.|+.++ .+|.+.+|.++...+.   ...+..+...+....|+|||+.|+.++ .++...+|++.........    
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----  330 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----  330 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----
Confidence            999888764 6888888877765443   233445666788899999999877655 5677777775422110000    


Q ss_pred             HHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCC
Q 003579          357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG  436 (809)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g  436 (809)
                                                                                                      
T Consensus       331 --------------------------------------------------------------------------------  330 (429)
T PRK01742        331 --------------------------------------------------------------------------------  330 (429)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCC
Q 003579          437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC  516 (809)
Q Consensus       437 ~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  516 (809)
                                               +         .+..  ....|+|+|++++.++.++ +.+||+.+++....... .
T Consensus       331 -------------------------l---------~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~  372 (429)
T PRK01742        331 -------------------------V---------GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-F  372 (429)
T ss_pred             -------------------------e---------cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-C
Confidence                                     0         0111  2345667777666666544 44477776654322211 2


Q ss_pred             CeEEEEEeeCCCEEEEEeCCCeEEEEEc--CCCeEEEEEecCCCCeeeEEECCC
Q 003579          517 SLVKIVYHRVNGLLATVADDLVIRLFDV--VALRMVRKFEGHTDRITDFCFSED  568 (809)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~d~~I~v~d~--~~~~~~~~~~~h~~~I~~l~fspd  568 (809)
                      ....+.|+|+|++|++++.++.+.+|++  .+++.++++.+|.+.+.+.+|||-
T Consensus       373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            2345779999999999998888888875  357888899999999999999984

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.1e-13  Score=132.83  Aligned_cols=199  Identities=19%  Similarity=0.268  Sum_probs=145.2

Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc-CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeCC---
Q 003579          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYD---  213 (809)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~~---  213 (809)
                      .....++|+-.  ..++++..|-.|++||-+. +....++ ..+..|+|++|-|.+ ..|++|+.. -|.+|....-   
T Consensus       100 dlr~~aWhqH~--~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen  100 DLRGVAWHQHI--IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             ceeeEeechhh--hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            34567788865  7899999999999999766 5544454 346789999999964 578888874 5899986521   


Q ss_pred             -e--------EEEEEeccCCCcEEEEEEecCCCCEEEEEc-CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE
Q 003579          214 -E--------ELVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL  283 (809)
Q Consensus       214 -~--------~~~~~~~~~~~~V~~l~fs~dg~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  283 (809)
                       .        ....+......+|++|.|.+||. .+++++ .+..|.|||..++..+.... ...+.++-+.|+||+.+|
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd~l  253 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGDVL  253 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCCEE
Confidence             1        11122222236899999999999 788777 67899999999998777665 456789999999999999


Q ss_pred             EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccc
Q 003579          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (809)
Q Consensus       284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~  348 (809)
                      +.+.-|+..++|.....   +...+...+ .+.|...+|+|+|++|+.+.. |.-++|++.-..+
T Consensus       254 faAt~davfrlw~e~q~---wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~  313 (445)
T KOG2139|consen  254 FAATCDAVFRLWQENQS---WTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGE  313 (445)
T ss_pred             EEecccceeeeehhccc---ceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCC
Confidence            99999999999954332   122222223 338999999999998876653 3456777654433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=6.4e-13  Score=135.30  Aligned_cols=356  Identities=15%  Similarity=0.201  Sum_probs=227.2

Q ss_pred             EEEEeCCCeEEEEeCCCCceEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579          154 VIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (809)
Q Consensus       154 l~~~~~dg~i~lwd~~~~~~~~~~~~~---~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l  230 (809)
                      +++=+..+ +.+|+....+.......+   ..+.+..++|++|+++|.+. +..+.|++..++..+.+...  . .+.++
T Consensus         5 ~aVRsSe~-~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~-~~~~L   79 (566)
T KOG2315|consen    5 YAVRSSEG-FYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--K-KTYDL   79 (566)
T ss_pred             EEEEccce-eEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--c-eeeee
Confidence            34444444 889987554433332222   45578889999999888876 47899999998875555443  3 79999


Q ss_pred             EEecCCCCEEEEEc----------CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579          231 AFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       231 ~fs~dg~~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~  300 (809)
                      .|+|-|. +|.+--          ..-.+.+|+.+++.....+....... ++..|+.|..+.+-. ..+.+.+|+....
T Consensus        80 ~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f  156 (566)
T KOG2315|consen   80 LFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSF  156 (566)
T ss_pred             eeccccc-ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhh-hcceEEEEecCCc
Confidence            9999998 555421          12458899999977766666334443 689999988643322 2467999977653


Q ss_pred             CCCceeEEeccCCCCCCeeEEEecCC--CEEEE-----EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhcc
Q 003579          301 DGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (809)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (809)
                      ..   ...  .-|...++.+.++|.+  ..+++     .|.-+.+++|......+...+.....                
T Consensus       157 ~~---~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF----------------  215 (566)
T KOG2315|consen  157 KT---IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF----------------  215 (566)
T ss_pred             cc---eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc----------------
Confidence            22   222  2356678888888853  23332     34455677776542222111111000                


Q ss_pred             CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003579          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (809)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~  453 (809)
                                                                       ....-..+.|.+-|+-|++            
T Consensus       216 -------------------------------------------------Fkadkvqm~WN~~gt~LLv------------  234 (566)
T KOG2315|consen  216 -------------------------------------------------FKADKVQMKWNKLGTALLV------------  234 (566)
T ss_pred             -------------------------------------------------cccceeEEEeccCCceEEE------------
Confidence                                                             0011111222222221111            


Q ss_pred             CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEE
Q 003579          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV  533 (809)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  533 (809)
                                             +....++..|+   +--...++++.+++.....-.+...++|.++.|+++++-++++
T Consensus       235 -----------------------LastdVDktn~---SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vv  288 (566)
T KOG2315|consen  235 -----------------------LASTDVDKTNA---SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVV  288 (566)
T ss_pred             -----------------------EEEEeecCCCc---cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEE
Confidence                                   01111222221   1123456888888866666667777999999999999866654


Q ss_pred             --eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC---CCeEEEEEcCCccEEEEeeeCcceEEEEEcC
Q 003579          534 --ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (809)
Q Consensus       534 --~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~---D~~I~vwd~~~~~~i~~~~~~~~v~~l~~sp  608 (809)
                        ..-..+.|||++ ++++..|  ..++=+++-|+|.|++|+.++-   -|.|-|||+.+.+++..+.... .+-+.|+|
T Consensus       289 yGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~P  364 (566)
T KOG2315|consen  289 YGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSP  364 (566)
T ss_pred             EecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcC
Confidence              456789999987 4455544  4577789999999999998884   4789999999999988887543 56689999


Q ss_pred             CCCeEEEEEeC-----CCeEEEeecC
Q 003579          609 NMDVLATAHVD-----QNGVYLWVNR  629 (809)
Q Consensus       609 dg~~lat~~~d-----~~~i~lW~~~  629 (809)
                      ||++++|+...     +++++||+..
T Consensus       365 dGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  365 DGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCcEEEEEeccccEEecCCeEEEEec
Confidence            99999999764     3479999864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1.2e-12  Score=133.47  Aligned_cols=372  Identities=14%  Similarity=0.179  Sum_probs=236.3

Q ss_pred             CCCcEEEEEcCCCccccceeeeEEcC--CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003579          111 IDGNMFIWAFKGIEENLAPVGHVKLD--DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCV  188 (809)
Q Consensus       111 ~dg~i~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~  188 (809)
                      ..-.+.+|........   ..++...  ......+++++++  + +...+.+..+.|++..+++.+.+...-  .+.++.
T Consensus         9 sSe~~~l~~~~~~~~~---~~~f~~~~~~~~~~v~~~S~~G--~-lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~   80 (566)
T KOG2315|consen    9 SSEGFYLFNGPGSKDA---VTVFEQNKTSRPCNVFAYSNNG--R-LFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLL   80 (566)
T ss_pred             ccceeEEeccCCcccc---ccccccCCCCCcceeEEEcCCC--c-EEEEEcCCeEEEEEccCCcEEEEeccc--eeeeee
Confidence            3445778876654331   1222221  2224567788887  4 444456678999999988766666543  889999


Q ss_pred             EcCCCCEEEEE-----eC-----CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579          189 SSPALDVVAVG-----CS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (809)
Q Consensus       189 ~sp~~~~la~g-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~  258 (809)
                      |||.+.+|.+=     ..     .-.+.+|+++++.....+....+.. .++.|+.|..  |+.--..+.+.+|++.+.+
T Consensus        81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~~f~  157 (566)
T KOG2315|consen   81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLGSFK  157 (566)
T ss_pred             ecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchh--hhhhhhcceEEEEecCCcc
Confidence            99999998762     11     2357899999977766666543333 6999999986  4444456789999998854


Q ss_pred             eeeeeecccccceEEEEEecC-CC-EEEE-----EcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEE-
Q 003579          259 LQSVIREAHDNAIISLHFFAN-EP-VLMS-----ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-  330 (809)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~-~~-~l~s-----~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-  330 (809)
                      ....-  -|...|+.+.++|. .+ .+++     .|.-..+++|.+.... ....+....-....=..+.|.+-|.-|+ 
T Consensus       158 ~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~~~a~ksFFkadkvqm~WN~~gt~LLv  234 (566)
T KOG2315|consen  158 TIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQPVANKSFFKADKVQMKWNKLGTALLV  234 (566)
T ss_pred             ceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccchhhhccccccceeEEEeccCCceEEE
Confidence            44333  37888999999998 33 3332     3455678888665221 1111111111122223455555443222 


Q ss_pred             EEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeee
Q 003579          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (809)
Q Consensus       331 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  410 (809)
                      .++.|       +...                                                                
T Consensus       235 Lastd-------VDkt----------------------------------------------------------------  243 (566)
T KOG2315|consen  235 LASTD-------VDKT----------------------------------------------------------------  243 (566)
T ss_pred             EEEEe-------ecCC----------------------------------------------------------------
Confidence            11111       1000                                                                


Q ss_pred             eecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEE
Q 003579          411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (809)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  490 (809)
                                               +   .+=+....+++++++....+..+         ...++|.++.|+|+++-++
T Consensus       244 -------------------------n---~SYYGEq~Lyll~t~g~s~~V~L---------~k~GPVhdv~W~~s~~EF~  286 (566)
T KOG2315|consen  244 -------------------------N---ASYYGEQTLYLLATQGESVSVPL---------LKEGPVHDVTWSPSGREFA  286 (566)
T ss_pred             -------------------------C---ccccccceEEEEEecCceEEEec---------CCCCCceEEEECCCCCEEE
Confidence                                     0   00012234555555522222222         4578999999999997665


Q ss_pred             EEe--CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEE
Q 003579          491 SAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCF  565 (809)
Q Consensus       491 s~~--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~f  565 (809)
                      ++.  .-.++.|+|++. .++..+ ..++-+++-|+|.|++++.++-+   |.+.|||+.+.+++..+....  -+-+.|
T Consensus       287 VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW  362 (566)
T KOG2315|consen  287 VVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEW  362 (566)
T ss_pred             EEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEE
Confidence            543  567899999764 333332 23677889999999999887764   899999999999998887544  345799


Q ss_pred             CCCCCEEEEEeC------CCeEEEEEcCCccEEEEeeeCcceEEEEEcCC
Q 003579          566 SEDGKWLLSSGM------DGSLRIWDVILARQIDAIHVDVSITALSLSPN  609 (809)
Q Consensus       566 spdg~~l~s~s~------D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spd  609 (809)
                      +|||+|++|++.      |+.++||++. |..+......+....+.|-|-
T Consensus       363 ~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  363 SPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPF  411 (566)
T ss_pred             cCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeeec
Confidence            999999998874      6789999975 777766655556777788763

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.63  E-value=1.3e-13  Score=128.51  Aligned_cols=279  Identities=11%  Similarity=0.136  Sum_probs=197.6

Q ss_pred             eeEecCCcceEEEEc----CCeEEEEEEc----CCeEEEEEcC--ccEEEEec-CCCCCCcEEEEEeCCe------EEEE
Q 003579           10 IGYITSSVPFSVQRL----GTENFVTVSV----GKAFHIYNCA--KLNLVLVG-PQLPKKIRALASYRDY------TFAA   72 (809)
Q Consensus        10 ~g~vs~~v~~~~~~~----~~~~~i~~~~----~~~i~iwd~~--~~~~~~~~-~~~~~~I~~la~~~~~------~~~a   72 (809)
                      .+|-+.-.+|++...    .+..++.++.    .+.|+|--++  +++++... -.|+-+++.+.|.|+.      +++.
T Consensus        39 y~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT  118 (364)
T KOG0290|consen   39 YTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT  118 (364)
T ss_pred             EEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence            344444445554432    4667777775    4567776554  35555443 4689999999999984      3445


Q ss_pred             ECCeEEEEECCeeEE------EE-----ccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCc
Q 003579           73 YGNHIAVVKRAHQVA------TW-----SRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK  138 (809)
Q Consensus        73 ~g~~i~vw~~~~~~~------~~-----~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~  138 (809)
                      +|+.+++|+.+.+..      .+     ..+.++++++.+   +-++|.+.|-|-+..|||++++... ..-.++-.|.+
T Consensus       119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~-~vkTQLIAHDK  197 (364)
T KOG0290|consen  119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG-TVKTQLIAHDK  197 (364)
T ss_pred             ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-ceeeEEEecCc
Confidence            577799998763211      12     246778999987   5789999999999999999987321 11234555778


Q ss_pred             cccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc---eEEEEcCCCCCEEEEEEcCC-CCEEEEEeCC-CeEEEEEeeCC
Q 003579          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPA-LDVVAVGCSD-GKIHVHNVRYD  213 (809)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~I~~l~~sp~-~~~la~g~~d-g~i~iwd~~~~  213 (809)
                      .+..++|...+. +.+++.+.||.++++|++..+   .+++-.....+...++|++. -+++|+-..| ..|.|.|++..
T Consensus       198 EV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P  276 (364)
T KOG0290|consen  198 EVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP  276 (364)
T ss_pred             ceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence            888888888554 789999999999999998754   34443443677888899874 5678876555 67999999865


Q ss_pred             e-EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee------eeeeecccccceEEEEEecCCC-EEEE
Q 003579          214 E-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------QSVIREAHDNAIISLHFFANEP-VLMS  285 (809)
Q Consensus       214 ~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~------~~~~~~~h~~~V~~l~~~~~~~-~l~s  285 (809)
                      . .+.++..| ++.|..++|.|.....+++++.|..+.+||+...-.      +...  .-.+.|+.+.|++..+ .++.
T Consensus       277 ~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~Ws~~~~Dwiai  353 (364)
T KOG0290|consen  277 CTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQWSSSQPDWIAI  353 (364)
T ss_pred             CcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh--hccceeeeeeecccCCCEEEE
Confidence            4 56667665 899999999999888999999999999999976422      1111  2457899999997554 5655


Q ss_pred             EcCCCcEEE
Q 003579          286 ASADNSIKM  294 (809)
Q Consensus       286 ~s~d~~i~v  294 (809)
                      +. ++.+.+
T Consensus       354 ~~-~kklei  361 (364)
T KOG0290|consen  354 CF-GKKLEI  361 (364)
T ss_pred             Ee-cCeeeE
Confidence            54 444443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=3.5e-14  Score=137.96  Aligned_cols=295  Identities=18%  Similarity=0.265  Sum_probs=202.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCce---------EEEEcCCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEeeCCeEEEEE-
Q 003579          152 NKVIVGSQEGSLQLWNISTKKK---------LYEFKGWGSSISSCVSSPALD--VVAVGCSDGKIHVHNVRYDEELVTF-  219 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~---------~~~~~~~~~~I~~l~~sp~~~--~la~g~~dg~i~iwd~~~~~~~~~~-  219 (809)
                      ..+.+|..-|.++--.+..+..         +.........|++++|.-+++  .+...+.+..+..+.+..+...... 
T Consensus        17 ~~~~Vg~~tG~lkgi~~~~~t~~~~~~nls~~~s~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~   96 (412)
T KOG3881|consen   17 MPLYVGTHTGQLKGIYLKRNTVISEDENLSALNSGVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD   96 (412)
T ss_pred             cceEEeccccccccceEeeccccccchhhhhhhcccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc
Confidence            4566666666554333322221         111122346678888876553  3333335666777766655544442 


Q ss_pred             ----eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce----eeeeeecccccceEEEEEecCCC-EEEEEcCC-
Q 003579          220 ----THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANEP-VLMSASAD-  289 (809)
Q Consensus       220 ----~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~----~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d-  289 (809)
                          .....++|..++.. ||  .|++|-.+|.+.+|..+.+.    .+..+.  -..++..+.-.+..+ ++++||.. 
T Consensus        97 ~~~~~~l~~~~I~gl~~~-dg--~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~  171 (412)
T KOG3881|consen   97 DAKTVSLGTKSIKGLKLA-DG--TLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKEN  171 (412)
T ss_pred             cccccccccccccchhhc-CC--EEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhc
Confidence                11124567777665 44  57788889999999988542    222222  235566666666655 45558888 


Q ss_pred             -CcEEEEEeeCCCCCceeEEec---cCC--CCCCeeEEEecC--CCEEEEEECCCCEEEEEeeecccceecchhhHHHHH
Q 003579          290 -NSIKMWIFDTTDGDPRLLRFR---SGH--SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  361 (809)
Q Consensus       290 -~~i~vw~~~~~~~~~~~~~~~---~~h--~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  361 (809)
                       +.+++||+......++-....   -+-  .-.++.+.|.+.  ...|++++.-+.+++||.+.++.             
T Consensus       172 ~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-------------  238 (412)
T KOG3881|consen  172 INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-------------  238 (412)
T ss_pred             ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-------------
Confidence             899999887652111100000   011  124578889886  78999999999999999875432             


Q ss_pred             hhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEE
Q 003579          362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (809)
Q Consensus       362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~  441 (809)
                                   |+.+|++                                         ...+++++...|+|+++++
T Consensus       239 -------------PV~~fd~-----------------------------------------~E~~is~~~l~p~gn~Iy~  264 (412)
T KOG3881|consen  239 -------------PVAQFDF-----------------------------------------LENPISSTGLTPSGNFIYT  264 (412)
T ss_pred             -------------ceeEecc-----------------------------------------ccCcceeeeecCCCcEEEE
Confidence                         2333332                                         2378999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEE
Q 003579          442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI  521 (809)
Q Consensus       442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~  521 (809)
                      |...|.+..||++.+.......       .+-.+.|+++..+|..+++++||.|..|||+|+++.+++......+.++++
T Consensus       265 gn~~g~l~~FD~r~~kl~g~~~-------kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~i  337 (412)
T KOG3881|consen  265 GNTKGQLAKFDLRGGKLLGCGL-------KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFI  337 (412)
T ss_pred             ecccchhheecccCceeecccc-------CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEE
Confidence            9999999999999999988743       388999999999999999999999999999999999988888877888877


Q ss_pred             EEee
Q 003579          522 VYHR  525 (809)
Q Consensus       522 ~~s~  525 (809)
                      .+.+
T Consensus       338 l~~~  341 (412)
T KOG3881|consen  338 LLRD  341 (412)
T ss_pred             EecC
Confidence            7754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.4e-13  Score=139.72  Aligned_cols=271  Identities=14%  Similarity=0.188  Sum_probs=198.4

Q ss_pred             ccccceEEEEEecCCCEEE-EEcCCCcEEEEEeeCCCCCceeEEeccCC-CCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579          266 AHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  343 (809)
                      .|....+.+..+|||++++ +|..--.|++||+....     ++.-... ...|.-.-.+.|-..++.--.|++|.+..-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            4677888999999999655 55567889999887542     2222222 233433334445455555556666654321


Q ss_pred             eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (809)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (809)
                      -.                                                                    .|.-.   ..
T Consensus       124 ~G--------------------------------------------------------------------~hy~~---RI  132 (703)
T KOG2321|consen  124 YG--------------------------------------------------------------------RHYRT---RI  132 (703)
T ss_pred             cC--------------------------------------------------------------------eeeee---ec
Confidence            10                                                                    00000   00


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  503 (809)
                      +..-..++++.-..-|+++++...|+.+|+..|..+..+.        ...+.++++.+++...+|++|+.+|.|.+||-
T Consensus       133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~--------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE--------TDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             CcCCccccccCCCccEEEeecCcceEEEEccccccccccc--------cccccceeeeecCccceEEecccCceEEEecc
Confidence            1223344454444556777778889999999999988875        55689999999999999999999999999999


Q ss_pred             CCCceeeeeecCC------------CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-cCCCCeeeEEECCC--
Q 003579          504 KGRDLKSRWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSED--  568 (809)
Q Consensus       504 ~~~~~~~~~~~~~------------~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspd--  568 (809)
                      +....+.++....            .++++.|+.+|-.+++|..+|.+.|||+++.+++..-. +..-+|..+.|.+.  
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            9888877776543            39999999999999999999999999999988765543 33467999999775  


Q ss_pred             CCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCC
Q 003579          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN  621 (809)
Q Consensus       569 g~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~  621 (809)
                      +..|+|.. ...++|||-.+|+....+.....+..+++-|++-++.+|-.+..
T Consensus       285 q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~  336 (703)
T KOG2321|consen  285 QNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK  336 (703)
T ss_pred             CceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc
Confidence            34555543 46799999999999999988888999999999999999887764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=2.1e-15  Score=149.08  Aligned_cols=267  Identities=15%  Similarity=0.201  Sum_probs=205.4

Q ss_pred             CcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCc
Q 003579          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (809)
Q Consensus       225 ~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~  304 (809)
                      .....+.++.+|+ +|+.|+..|.|..+|..++++...+.  -...|..+.|..+..+++++- .+.+.|||-  ..   
T Consensus       130 FGPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~--~G---  200 (545)
T KOG1272|consen  130 FGPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN--NG---  200 (545)
T ss_pred             cCCeeeeecCCcc-EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhh-hceEEEecC--CC---
Confidence            3567899999999 78888999999999999999988876  567799999999988887765 466788843  22   


Q ss_pred             eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (809)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  384 (809)
                      ..+..+..| ..|..+.|.|---.|++++..|.++.-|+..++...++..+                             
T Consensus       201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-----------------------------  250 (545)
T KOG1272|consen  201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-----------------------------  250 (545)
T ss_pred             cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----------------------------
Confidence            344555444 45899999998878889999999999999888776655332                             


Q ss_pred             cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeC
Q 003579          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  464 (809)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~  464 (809)
                                                             .+.+..++-.|-.-.+-+|..+|+|.+|...+...+..+. 
T Consensus       251 ---------------------------------------~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-  290 (545)
T KOG1272|consen  251 ---------------------------------------AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-  290 (545)
T ss_pred             ---------------------------------------CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-
Confidence                                                   1566667777878888999999999999999988887765 


Q ss_pred             cccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEE-
Q 003579          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-  543 (809)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d-  543 (809)
                             .|.++|.+++++++|++++|+|.|..++|||++.-..+.++....+...+++|..| +||.+ ....+.||. 
T Consensus       291 -------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d  361 (545)
T KOG1272|consen  291 -------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALS-YGDHVQIWKD  361 (545)
T ss_pred             -------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeee-cCCeeeeehh
Confidence                   89999999999999999999999999999999998888877777788888888644 44444 445788883 


Q ss_pred             cCCCe--EEEEEecC--CCCeeeEEECCCCCEEEEEeCCC
Q 003579          544 VVALR--MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG  579 (809)
Q Consensus       544 ~~~~~--~~~~~~~h--~~~I~~l~fspdg~~l~s~s~D~  579 (809)
                      .-.+.  .-..+..|  .+.|.++.|.|-...|-.|-.-|
T Consensus       362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             hhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            22211  11111123  35788889988666665554444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.61  E-value=2.9e-14  Score=143.66  Aligned_cols=239  Identities=17%  Similarity=0.334  Sum_probs=173.8

Q ss_pred             eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEE-----eCCCCCCEEEEEeCCCeEEEEeCCCCceEEE
Q 003579          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIM-----HPDTYLNKVIVGSQEGSLQLWNISTKKKLYE  176 (809)
Q Consensus       102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~  176 (809)
                      .|++|+--- ...+.+|+...+.....++....+.......-.|     .|.+  --+++|-..|.+++.|....+....
T Consensus       134 ~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g--~dllIGf~tGqvq~idp~~~~~skl  210 (636)
T KOG2394|consen  134 KGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKG--LDLLIGFTTGQVQLIDPINFEVSKL  210 (636)
T ss_pred             CCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCC--cceEEeeccCceEEecchhhHHHHh
Confidence            377777653 5569999988654433334333332221111112     2333  3588888889999998765332222


Q ss_pred             Ec----CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeC--------------C--------------eEEEEEeccC
Q 003579          177 FK----GWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRY--------------D--------------EELVTFTHSM  223 (809)
Q Consensus       177 ~~----~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~--------------~--------------~~~~~~~~~~  223 (809)
                      |.    -....|+|+.|-|.+ ..++++..+|.+.+||...              +              .++..+... 
T Consensus       211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~-  289 (636)
T KOG2394|consen  211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG-  289 (636)
T ss_pred             hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEec-
Confidence            21    124789999999954 4666778889999997531              1              112222222 


Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      .+.|...+|+|||+ +||+.+.||.++|+|..+.+++..++ ..-+...|++|+|||+++++|+.|--|.||.+...   
T Consensus       290 ~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er---  364 (636)
T KOG2394|consen  290 EGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER---  364 (636)
T ss_pred             cccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccc---
Confidence            46789999999999 99999999999999999999998888 77889999999999999999999999999998766   


Q ss_pred             ceeEEeccCCCCCCeeEEEec-----------------------------------CC-------------CEEEEEECC
Q 003579          304 PRLLRFRSGHSAPPLCIRFYA-----------------------------------NG-------------RHILSAGQD  335 (809)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~-----------------------------------~~-------------~~l~s~~~d  335 (809)
                       +++..-.||...|..++|.|                                   ++             -.+-+.+.|
T Consensus       365 -RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqD  443 (636)
T KOG2394|consen  365 -RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQD  443 (636)
T ss_pred             -eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeeccccc
Confidence             78888899999999999982                                   01             146678899


Q ss_pred             CCEEEEEeeecccce
Q 003579          336 RAFRLFSVIQDQQSR  350 (809)
Q Consensus       336 g~i~~wd~~~~~~~~  350 (809)
                      ..+.+||+..+....
T Consensus       444 TqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  444 TQLCLWDLTEDVLVP  458 (636)
T ss_pred             ceEEEEecchhhccc
Confidence            999999997665433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.61  E-value=4.5e-14  Score=142.29  Aligned_cols=142  Identities=12%  Similarity=0.180  Sum_probs=112.0

Q ss_pred             CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC--------------ceeeeeeCc------ccccccCccccEEEEEEc
Q 003579          425 TAVKACTISACG-NFAVLGTAGGWIERFNLQSG--------------ISRGSYLDM------SERSNYAHNGEVVGVACD  483 (809)
Q Consensus       425 ~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~--------------~~~~~~~~~------~~~~~~~h~~~v~~l~~~  483 (809)
                      ..++++.|-|.+ ..++++..+|.+++||..-.              .........      +.....--.+.|...+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            678888888744 56677788898988865210              000000000      000111234578999999


Q ss_pred             CCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee
Q 003579          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (809)
Q Consensus       484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~  562 (809)
                      |||++||+.+.||.+||+|+.+.+++...+.- +...|++|+|||++|++|++|--|.||.+..++++..-+||...|+.
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~  379 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV  379 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence            99999999999999999999998888776544 88999999999999999999999999999999999999999999999


Q ss_pred             EEEC
Q 003579          563 FCFS  566 (809)
Q Consensus       563 l~fs  566 (809)
                      ++|.
T Consensus       380 VaFD  383 (636)
T KOG2394|consen  380 VAFD  383 (636)
T ss_pred             Eeec
Confidence            9998

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=3.4e-13  Score=127.73  Aligned_cols=207  Identities=13%  Similarity=0.159  Sum_probs=163.7

Q ss_pred             CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC
Q 003579          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD  213 (809)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~---~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~  213 (809)
                      ...+...+++++.  ..++++.....|.||.....   +..++++.|...|+++.|+|..+.|++++.|..-++|....+
T Consensus        10 ~~pitchAwn~dr--t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDR--TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCC--ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            4455667788888  88999999999999987654   578999999999999999999999999999999999998433


Q ss_pred             -e--EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee---eeeeecccccceEEEEEecCCCEEEEEc
Q 003579          214 -E--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSAS  287 (809)
Q Consensus       214 -~--~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s  287 (809)
                       +  +...+... ...++++.|+|.+. .+|+|+....|.||-++...-   -+.++..+.+.|.++.|+|++-+|++|+
T Consensus        88 ~~WkptlvLlRi-NrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   88 GTWKPTLVLLRI-NRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CeeccceeEEEe-ccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence             2  33344443 67899999999998 899999999999998765532   2223336788999999999999999999


Q ss_pred             CCCcEEEEEeeCCCC--------------CceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579          288 ADNSIKMWIFDTTDG--------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (809)
Q Consensus       288 ~d~~i~vw~~~~~~~--------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~  347 (809)
                      .|+..+++..-...-              ...++.......+.+..+.|+|+|..|+-.+.|.++.+-|...+.
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            999999986422110              012222333456789999999999999999999999998876554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.60  E-value=1.6e-12  Score=130.63  Aligned_cols=359  Identities=14%  Similarity=0.187  Sum_probs=238.9

Q ss_pred             EEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEE
Q 003579          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (809)
Q Consensus       164 ~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg  243 (809)
                      .+|+..+...-..+....-++...++||.|.+|++....| |.+|.-.....+..+.+   ..|..+.|+|.++ +|.+-
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~k-YL~tw   89 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH---PDVKYLDFSPNEK-YLVTW   89 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeeec---CCceecccCcccc-eeeee
Confidence            3455555544445554677899999999999999987754 89999888777777765   3699999999999 88876


Q ss_pred             cCCC---------------cEEEEECCCceeeeeeecccccc--eE-EEEEecCCCEEEEEcCCCcEEEEEeeCCCCCce
Q 003579          244 ASSG---------------VISIWNLEKRRLQSVIREAHDNA--II-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPR  305 (809)
Q Consensus       244 ~~dg---------------~I~iwdl~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~  305 (809)
                      +..+               .+.+||+.++.++..+. .-..+  .. -+.|+-+..+++-.. ..++.++++ +..-...
T Consensus        90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~  166 (561)
T COG5354          90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEH  166 (561)
T ss_pred             ccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccC
Confidence            5433               49999999999998887 44433  44 678888887666543 357889876 3322212


Q ss_pred             eEEeccCCCCCCeeEEEecCC--CEEEE-----EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeE
Q 003579          306 LLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (809)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (809)
                      ....+.  ...+....++|.+  ..|+.     .+.++.+++|.+..........                         
T Consensus       167 p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-------------------------  219 (561)
T COG5354         167 PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-------------------------  219 (561)
T ss_pred             chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------------------------
Confidence            222211  3457777888853  23332     2445566666654322211100                         


Q ss_pred             EeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe-----------CCCc
Q 003579          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-----------AGGW  447 (809)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~-----------~~g~  447 (809)
                                               ++.                  ..-..+.|.+.|+++++-.           ....
T Consensus       220 -------------------------lfk------------------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn  256 (561)
T COG5354         220 -------------------------LFK------------------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN  256 (561)
T ss_pred             -------------------------eEe------------------ecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence                                     000                  1122344555566554421           1245


Q ss_pred             EEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe--CcCeEEEEECCCCceeeeeecCCCeEEEEEee
Q 003579          448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  525 (809)
Q Consensus       448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~  525 (809)
                      +++++++.......         ..-.++|...+|.|.++.+++++  .+..+.++|++..  +...-....-..+.|+|
T Consensus       257 Lyl~~~~e~~i~V~---------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp  325 (561)
T COG5354         257 LYLLRITERSIPVE---------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP  325 (561)
T ss_pred             EEEEeeccccccee---------ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC
Confidence            77777774333332         14578999999999987766554  7788999998876  44444455667788999


Q ss_pred             CCCEEEEEeCC---CeEEEEEcCCCeEEE-EEecCCCCeeeEEECCCCCEEEEEe------CCCeEEEEEcCCccEEEEe
Q 003579          526 VNGLLATVADD---LVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSG------MDGSLRIWDVILARQIDAI  595 (809)
Q Consensus       526 ~~~~la~~~~d---~~I~v~d~~~~~~~~-~~~~h~~~I~~l~fspdg~~l~s~s------~D~~I~vwd~~~~~~i~~~  595 (809)
                      .++++++++-|   |.|.+||......+. .+.+..  .+-+.|+|||+++.++.      .|..|.+||+......   
T Consensus       326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---  400 (561)
T COG5354         326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---  400 (561)
T ss_pred             cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---
Confidence            99999887665   789999988765444 676544  34467999999988764      4788999998744322   


Q ss_pred             eeCcceEEEEEcCCCCeEEEEEeCC
Q 003579          596 HVDVSITALSLSPNMDVLATAHVDQ  620 (809)
Q Consensus       596 ~~~~~v~~l~~spdg~~lat~~~d~  620 (809)
                          ..+.+.|.|.|++.-|.+...
T Consensus       401 ----el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 ----ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ----hhhhccccCCcccceeeccCC
Confidence                567788999998887776654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.60  E-value=1.7e-10  Score=114.94  Aligned_cols=437  Identities=13%  Similarity=0.127  Sum_probs=263.3

Q ss_pred             EcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEE-------eCCCeEE
Q 003579          134 KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-------CSDGKIH  206 (809)
Q Consensus       134 ~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g-------~~dg~i~  206 (809)
                      .+|.-+.......|+-|-..|+..+.|- +..+++++|+..+ +..|-+-|+...|+|+|+.+|..       ...+.+.
T Consensus        33 ~~h~~cM~n~~l~PDI~GD~IiFt~~Dd-lWe~slk~g~~~r-itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly  110 (668)
T COG4946          33 GFHEFCMKNYYLNPDIYGDRIIFTCCDD-LWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLY  110 (668)
T ss_pred             hhhhhhhhhhhcCCcccCcEEEEEechH-HHHhhhccCCeeE-EecccceeccccCCCCCcEEEEEEEEecCCCccccEE
Confidence            3444344444577887777777776665 5556777887765 44567889999999999988872       2235678


Q ss_pred             EEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCc----EEEEECCCcee-eeeeecccccceEEEEEecCCC
Q 003579          207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV----ISIWNLEKRRL-QSVIREAHDNAIISLHFFANEP  281 (809)
Q Consensus       207 iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~----I~iwdl~~~~~-~~~~~~~h~~~V~~l~~~~~~~  281 (809)
                      +.+.+.|+..+.---+ ..--.-.-|.|||+ ++++...-.-    -.+|.+..... ...   -.-++.+.+.+- || 
T Consensus       111 ~v~~e~Ge~kRiTyfG-r~fT~VaG~~~dg~-iiV~TD~~tPF~q~~~lYkv~~dg~~~e~---LnlGpathiv~~-dg-  183 (668)
T COG4946         111 VVPSEDGEAKRITYFG-RRFTRVAGWIPDGE-IIVSTDFHTPFSQWTELYKVNVDGIKTEP---LNLGPATHIVIK-DG-  183 (668)
T ss_pred             EEeCCCCcEEEEEEec-cccceeeccCCCCC-EEEEeccCCCcccceeeeEEccCCceeee---ccCCceeeEEEe-CC-
Confidence            8888888754433222 22233455899998 6665542211    12222221111 111   122444455443 33 


Q ss_pred             EEEEEcCCC------------cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579          282 VLMSASADN------------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (809)
Q Consensus       282 ~l~s~s~d~------------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  349 (809)
                      .++.|-.--            .=++|.-.......+....+.+|-..+.   .-. ++..+....||.=.+|++.-...-
T Consensus       184 ~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~Pm---IV~-~RvYFlsD~eG~GnlYSvdldGkD  259 (668)
T COG4946         184 IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPM---IVG-ERVYFLSDHEGVGNLYSVDLDGKD  259 (668)
T ss_pred             EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCce---EEc-ceEEEEecccCccceEEeccCCch
Confidence            333321111            1245543332222333334445443322   221 222223334544444444321110


Q ss_pred             eecchhhHHHHHhhccchhhhhccCceeEEeecc--ccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC-CCCC
Q 003579          350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE--IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE-NPTA  426 (809)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~  426 (809)
                             +.+                -+.|.--.  ....|+..++..  ..+.++++|..+..+.+..+..... ....
T Consensus       260 -------lrr----------------HTnFtdYY~R~~nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~  314 (668)
T COG4946         260 -------LRR----------------HTNFTDYYPRNANSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQ  314 (668)
T ss_pred             -------hhh----------------cCCchhccccccCCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCcccccccc
Confidence                   000                00111111  122344455543  4567888888776654433331111 1111


Q ss_pred             eEEE-------EEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC-e
Q 003579          427 VKAC-------TISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-D  497 (809)
Q Consensus       427 v~~v-------~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~  497 (809)
                      ...+       .+++ +|++++..+ .|...+.+...+-.++          .+|.+.|.-..+..+++-++.|..|| .
T Consensus       315 ~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq----------v~~~~~VrY~r~~~~~e~~vigt~dgD~  383 (668)
T COG4946         315 PKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ----------VGKKGGVRYRRIQVDPEGDVIGTNDGDK  383 (668)
T ss_pred             ccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE----------cCCCCceEEEEEccCCcceEEeccCCce
Confidence            1111       1232 567776664 4566777666555444          27788898888888888899999999 8


Q ss_pred             EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC
Q 003579          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (809)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~  577 (809)
                      +-++|..+++.......-+.|.++..+++|++++++.+...+.++|+++++....=+...+-|++++|||+++|+|.+--
T Consensus       384 l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP  463 (668)
T COG4946         384 LGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP  463 (668)
T ss_pred             EEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecC
Confidence            99999999887776666699999999999999999999999999999999876555556788999999999999998866


Q ss_pred             CC----eEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeC
Q 003579          578 DG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  619 (809)
Q Consensus       578 D~----~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d  619 (809)
                      +|    .|+++|+..++..+.-.....=.+-+|.|||++|..-+..
T Consensus       464 ~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~R  509 (668)
T COG4946         464 EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSAR  509 (668)
T ss_pred             cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEecc
Confidence            55    6999999998887766555556778999999988776553

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=1.4e-13  Score=133.85  Aligned_cols=274  Identities=13%  Similarity=0.163  Sum_probs=195.1

Q ss_pred             CCcEEEEEEecCCCCEEEEEc-CCCcEEEEECCCceeeeeee-----cccccceEEEEEecCCCEEEEEcCCCcEEEEEe
Q 003579          224 RGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~-~dg~I~iwdl~~~~~~~~~~-----~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~  297 (809)
                      ...|++++|..+++.-+..+. .+-.+..+......+...+.     .....+|..+... |+ .|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence            357889999877764444444 67777777777766555431     1345677777764 33 6888888999999987


Q ss_pred             eCCCCCceeEEeccCCCCCCeeEEEecCCC-EEEEEECC--CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579          298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (809)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (809)
                      ..++.....+..+..+ .++..+.-++... .+++||..  ..+.+||+.+.+++.+                       
T Consensus       133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~-----------------------  188 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS-----------------------  188 (412)
T ss_pred             cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeee-----------------------
Confidence            6544211222222222 3455566666333 44557777  6788888765532221                       


Q ss_pred             ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (809)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~  454 (809)
                                                      ..+-..                        ++     -+=.|-     
T Consensus       189 --------------------------------aKNvpn------------------------D~-----L~LrVP-----  202 (412)
T KOG3881|consen  189 --------------------------------AKNVPN------------------------DR-----LGLRVP-----  202 (412)
T ss_pred             --------------------------------ccCCCC------------------------cc-----ccceee-----
Confidence                                            111000                        00     000111     


Q ss_pred             CCceeeeeeCcccccccCccccEEEEEEcCC--CCEEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEEEEEeeCCCEE
Q 003579          455 SGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLL  530 (809)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~l  530 (809)
                                          -.++++.|-+.  ...+++++.-+.+++||.+.+ +++..+... .+++++...|.++++
T Consensus       203 --------------------vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~I  262 (412)
T KOG3881|consen  203 --------------------VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFI  262 (412)
T ss_pred             --------------------eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEE
Confidence                                22455666665  788999999999999999854 566777655 899999999999999


Q ss_pred             EEEeCCCeEEEEEcCCCeEEEE-EecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCC
Q 003579          531 ATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN  609 (809)
Q Consensus       531 a~~~~d~~I~v~d~~~~~~~~~-~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spd  609 (809)
                      ++|..-+.+..||+++++.... +.|..+.|+++..+|.+++|+++|.|+.|||+|+.+.+++......+.++++.+.++
T Consensus       263 y~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  263 YTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             EEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            9999999999999999998777 899999999999999999999999999999999999999888888888888888654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.59  E-value=1e-11  Score=130.58  Aligned_cols=281  Identities=15%  Similarity=0.214  Sum_probs=188.1

Q ss_pred             EEEEcCC----CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC----CCCEEEEEeeec-ccceecc
Q 003579          283 LMSASAD----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ----DRAFRLFSVIQD-QQSRELS  353 (809)
Q Consensus       283 l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~----dg~i~~wd~~~~-~~~~~~~  353 (809)
                      ++.|+..    +.|.+|.++..++....+... .-...+..++++|++++|++...    ++.|..|++... .....+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            3445544    789999998777665555543 24455678999999999999877    467888877654 2221111


Q ss_pred             hhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc
Q 003579          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  433 (809)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s  433 (809)
                      .                                                             ..    ........++++
T Consensus        81 ~-------------------------------------------------------------~~----~~g~~p~~i~~~   95 (345)
T PF10282_consen   81 S-------------------------------------------------------------VP----SGGSSPCHIAVD   95 (345)
T ss_dssp             E-------------------------------------------------------------EE----ESSSCEEEEEEC
T ss_pred             e-------------------------------------------------------------ec----cCCCCcEEEEEe
Confidence            0                                                             00    012566789999


Q ss_pred             CCCCEEEEEe-CCCcEEEEECCC-CceeeeeeCc-----ccccccCccccEEEEEEcCCCCEEEEEe-CcCeEEEEECCC
Q 003579          434 ACGNFAVLGT-AGGWIERFNLQS-GISRGSYLDM-----SERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG  505 (809)
Q Consensus       434 ~~g~~l~~g~-~~g~i~i~~~~~-~~~~~~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~  505 (809)
                      |++++++++. .+|.|.+|++.. |.........     .............++.++|++++++++. ....|.+|++..
T Consensus        96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~  175 (345)
T PF10282_consen   96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD  175 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred             cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            9999998886 589999999987 4433321100     0000112235578899999999888775 345799999976


Q ss_pred             Cc--eee----eeecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcC--CCe--EEEEEecC------CCCeeeEEECCC
Q 003579          506 RD--LKS----RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALR--MVRKFEGH------TDRITDFCFSED  568 (809)
Q Consensus       506 ~~--~~~----~~~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~--~~~--~~~~~~~h------~~~I~~l~fspd  568 (809)
                      ..  +..    .+........++|+|+++++.+.++ ++.|.++++.  +++  .+..+...      ......|+++||
T Consensus       176 ~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd  255 (345)
T PF10282_consen  176 DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD  255 (345)
T ss_dssp             TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred             CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence            65  422    2344588999999999998877765 7889999988  443  23333321      125778999999


Q ss_pred             CCEEEEEe-CCCeEEEEEcC--CccE--EEEeeeCc-ceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          569 GKWLLSSG-MDGSLRIWDVI--LARQ--IDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       569 g~~l~s~s-~D~~I~vwd~~--~~~~--i~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      |++|.++. .+.+|.+|++.  +|++  +..+.... ....++++|+|++|+++..+++.|.+|++.
T Consensus       256 g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  256 GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            99987665 56789999993  3443  44444433 389999999999999999888889999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=8.7e-13  Score=142.78  Aligned_cols=236  Identities=13%  Similarity=0.146  Sum_probs=158.0

Q ss_pred             eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (809)
Q Consensus       162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~  238 (809)
                      .|.+||...... +.+..+...+.+.+|||||+.|+..+.   +..|.+|++.+++.......  .+.+.+.+|+|||+.
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~  256 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSK  256 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCE
Confidence            699999865544 344456778999999999999987642   45799999988764332221  344567899999994


Q ss_pred             EEEEEcCCC--cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579          239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (809)
Q Consensus       239 ~lasg~~dg--~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (809)
                      ++++.+.+|  .|.+||+++++......  +...+....|+||++.|+.++. ++...+|.++..++..+.+   ..+..
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t~~~~  331 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---TWEGS  331 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---ecCCC
Confidence            554545555  59999999887654433  4456789999999998876665 4667888777655443333   22334


Q ss_pred             CCeeEEEecCCCEEEEEECCC---CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccccccccee
Q 003579          316 PPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (809)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  392 (809)
                      ......|+|||++|+..+.++   .+.+||+.++.. ..+                                        
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~L----------------------------------------  370 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL----------------------------------------  370 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEe----------------------------------------
Confidence            456789999999998766542   366666543321 111                                        


Q ss_pred             EEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEECCCCceeeeeeCccccc
Q 003579          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW---IERFNLQSGISRGSYLDMSERS  469 (809)
Q Consensus       393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~---i~i~~~~~~~~~~~~~~~~~~~  469 (809)
                                               ..  .  .......|+|||++++.++.++.   +.++++. |.....+.      
T Consensus       371 -------------------------t~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~------  414 (429)
T PRK03629        371 -------------------------TD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP------  414 (429)
T ss_pred             -------------------------CC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc------
Confidence                                     00  0  11234679999999999988764   5666764 44444443      


Q ss_pred             ccCccccEEEEEEcC
Q 003579          470 NYAHNGEVVGVACDS  484 (809)
Q Consensus       470 ~~~h~~~v~~l~~~~  484 (809)
                        .|.+.+...+|+|
T Consensus       415 --~~~~~~~~p~Wsp  427 (429)
T PRK03629        415 --ATDGQVKFPAWSP  427 (429)
T ss_pred             --cCCCCcCCcccCC
Confidence              6777888888887

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=7.8e-13  Score=134.50  Aligned_cols=271  Identities=12%  Similarity=0.198  Sum_probs=196.6

Q ss_pred             cCCcceEEEEcCCeEEEEEEc-CCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCe---EEEEECCeEEEEECCeeEEEE
Q 003579           14 TSSVPFSVQRLGTENFVTVSV-GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDY---TFAAYGNHIAVVKRAHQVATW   89 (809)
Q Consensus        14 s~~v~~~~~~~~~~~~i~~~~-~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~---~~~a~g~~i~vw~~~~~~~~~   89 (809)
                      |+.+..+   +++++++++++ --.|++||+.++.+.|.-.-....|.-.-++.|.   +++-....|..-.....    
T Consensus        54 st~ik~s---~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~----  126 (703)
T KOG2321|consen   54 STRIKVS---PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR----  126 (703)
T ss_pred             cceeEec---CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe----
Confidence            4555555   88888888877 6689999999999999875445555555556552   22222222322211110    


Q ss_pred             ccccccEEEEEEe------CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeE
Q 003579           90 SRHSAKVNLLLLF------GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (809)
Q Consensus        90 ~~h~~~V~~l~~~------g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i  163 (809)
                       .+..+|.....|      .--|+.++....|.-.+++.+..    +..+....+....+-+++-.  ..|++|+.+|.|
T Consensus       127 -hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~h--gLla~Gt~~g~V  199 (703)
T KOG2321|consen  127 -HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEH--GLLACGTEDGVV  199 (703)
T ss_pred             -eeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc----ccccccccccceeeeecCcc--ceEEecccCceE
Confidence             112223222211      22344555577799999999887    56666666777788888887  789999999999


Q ss_pred             EEEeCCCCceEEEEc------CCCC-----CEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEE
Q 003579          164 QLWNISTKKKLYEFK------GWGS-----SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF  232 (809)
Q Consensus       164 ~lwd~~~~~~~~~~~------~~~~-----~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~f  232 (809)
                      ..||.++...+.++.      .|.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.+...-+|..+.|
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~  279 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW  279 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence            999998877665553      2333     49999999999999999999999999999999998888777789999999


Q ss_pred             ecCC-CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC
Q 003579          233 SSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (809)
Q Consensus       233 s~dg-~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~  301 (809)
                      .+.+ +..+++. ....++|||-.+|+....+.  ....+..+++.|++.+++++-.+..+..|-+....
T Consensus       280 ~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  280 QDTDQQNKVVSM-DKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             cccCCCceEEec-chHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence            7753 2245554 46789999999999998887  45569999999999999999888877777554443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.57  E-value=8.8e-11  Score=123.60  Aligned_cols=306  Identities=16%  Similarity=0.184  Sum_probs=199.3

Q ss_pred             EEEEcCC----CcEEEEEC--CCceeeeeeecccccceEEEEEecCCCEEEEEcC----CCcEEEEEeeCCCCCceeEEe
Q 003579          240 LASGASS----GVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRF  309 (809)
Q Consensus       240 lasg~~d----g~I~iwdl--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----d~~i~vw~~~~~~~~~~~~~~  309 (809)
                      +++|+..    +.|.+|++  +++++...-...-......++++|++++|.++..    ++.|..|.++...+....+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            3445544    68888887  5554433222234456778999999999998876    578999998877555555555


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEEE-CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccc
Q 003579          310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (809)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  388 (809)
                      .......+..++++|++++|+++. .+|++.++++...........                                  
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~----------------------------------  127 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ----------------------------------  127 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE----------------------------------
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee----------------------------------
Confidence            544556678899999999999887 588999999876433222110                                  


Q ss_pred             cceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCc--eee--eee
Q 003579          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGI--SRG--SYL  463 (809)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~-g~i~i~~~~~~~--~~~--~~~  463 (809)
                                     ++....     .-..+.........++.++|+|+++++.... ..|.+|++....  ...  .+.
T Consensus       128 ---------------~~~~~g-----~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~  187 (345)
T PF10282_consen  128 ---------------TVRHEG-----SGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK  187 (345)
T ss_dssp             ---------------EEESEE-----EESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred             ---------------ecccCC-----CCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence                           000000     0001112334678899999999999886543 589999987665  222  111


Q ss_pred             CcccccccCccccEEEEEEcCCCCEEEEEe-CcCeEEEEECC--CCce--eeeeec-------CCCeEEEEEeeCCCEEE
Q 003579          464 DMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK--GRDL--KSRWEV-------GCSLVKIVYHRVNGLLA  531 (809)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~--~~~~--~~~~~~-------~~~i~~~~~s~~~~~la  531 (809)
                             .......+.++|+|+++++.... .++.|.++++.  ++.+  +..+..       ......++++|||++|.
T Consensus       188 -------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly  260 (345)
T PF10282_consen  188 -------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY  260 (345)
T ss_dssp             -------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred             -------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence                   14456788999999998876655 67889999988  4432  222211       12578899999999988


Q ss_pred             EEeC-CCeEEEEEcC--CC--eEEEEEecCCCCeeeEEECCCCCEEEEEe-CCCeEEEEEc--CCccEEEEee--eCcce
Q 003579          532 TVAD-DLVIRLFDVV--AL--RMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQIDAIH--VDVSI  601 (809)
Q Consensus       532 ~~~~-d~~I~v~d~~--~~--~~~~~~~~h~~~I~~l~fspdg~~l~s~s-~D~~I~vwd~--~~~~~i~~~~--~~~~v  601 (809)
                      ++.. +..|.+|++.  ++  +.+..+.........++++|+|++|+++. .++.|.+|++  .+|.+...-.  .-...
T Consensus       261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p  340 (345)
T PF10282_consen  261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSP  340 (345)
T ss_dssp             EEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSE
T ss_pred             EEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCC
Confidence            8764 6789999993  33  34455554445588999999999999877 5678999976  5676654442  12236


Q ss_pred             EEEEE
Q 003579          602 TALSL  606 (809)
Q Consensus       602 ~~l~~  606 (809)
                      .|+.|
T Consensus       341 ~ci~f  345 (345)
T PF10282_consen  341 VCIVF  345 (345)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            66665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=5.4e-12  Score=119.71  Aligned_cols=239  Identities=13%  Similarity=0.209  Sum_probs=169.4

Q ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEE-EeCC------CeEEEEEeeCCe
Q 003579          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAV-GCSD------GKIHVHNVRYDE  214 (809)
Q Consensus       142 ~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~-g~~d------g~i~iwd~~~~~  214 (809)
                      .+.|..+.  ..+++|..+| .++|+.+--+...+-..+.+.+.-+..--..++||. |+.+      ..|.|||-...+
T Consensus        10 svs~NQD~--ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen   10 SVSFNQDH--SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             EEEEccCC--ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            36677777  6788887777 999998765443332222232222222222345554 4333      479999977778


Q ss_pred             EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECC-Cceeeeeeecc-cccceEEEEEecCCCEEEEEc-CCCc
Q 003579          215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREA-HDNAIISLHFFANEPVLMSAS-ADNS  291 (809)
Q Consensus       215 ~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~-~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s-~d~~  291 (809)
                      ++.++..  ..+|.++.++++   .+++.- .+.|.+|... +.+.++.+... ...+..+++-..+..+|+.-| .-|+
T Consensus        87 ~i~el~f--~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   87 CIIELSF--NSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             EEEEEEe--ccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            8888876  588999999987   344443 5789999987 44666665522 234455554444444566544 4689


Q ss_pred             EEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC-EEEEEeeecccceecchhhHHHHHhhccchhhh
Q 003579          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA-FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE  370 (809)
Q Consensus       292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (809)
                      |++-++......  .-.....|...|.|++.+-+|..++|+|..|+ ||+||..++....++..+.              
T Consensus       161 vQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~--------------  224 (346)
T KOG2111|consen  161 VQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV--------------  224 (346)
T ss_pred             EEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC--------------
Confidence            999988765431  23445699999999999999999999999998 6999999998888875532              


Q ss_pred             hccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003579          371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER  450 (809)
Q Consensus       371 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i  450 (809)
                                                                          ....+.+++|||++.++++++..|++++
T Consensus       225 ----------------------------------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHi  252 (346)
T KOG2111|consen  225 ----------------------------------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHI  252 (346)
T ss_pred             ----------------------------------------------------chheEEEEEeCCCccEEEEEcCCCeEEE
Confidence                                                                1278999999999999999999999999


Q ss_pred             EECCCCc
Q 003579          451 FNLQSGI  457 (809)
Q Consensus       451 ~~~~~~~  457 (809)
                      |.+....
T Consensus       253 F~l~~~~  259 (346)
T KOG2111|consen  253 FSLRDTE  259 (346)
T ss_pred             EEeecCC
Confidence            9987643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.2e-12  Score=141.65  Aligned_cols=170  Identities=13%  Similarity=0.054  Sum_probs=119.7

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCc-C--eEEE
Q 003579          427 VKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-G--DIKV  500 (809)
Q Consensus       427 v~~v~~s~~g~~l~~g-~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g--~i~i  500 (809)
                      .....|+|||+.++.. ..+|  .|++||+.++......         .+...+....|+|+|+.|+.++.+ +  .|..
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~  315 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK  315 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence            4467999999988875 3445  5889999888654432         334567889999999988877654 4  4555


Q ss_pred             EECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC
Q 003579          501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (809)
Q Consensus       501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~  577 (809)
                      +|+.+++...............|+|||++++..+.+   ..|++||+.+++.. .+... .......|+|||++|+.++.
T Consensus       316 ~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        316 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             EECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEc
Confidence            577776554333333455678999999999887653   46889999888643 34322 23456889999999999887


Q ss_pred             CCe---EEEEEcCCccEEEEeee-CcceEEEEEcC
Q 003579          578 DGS---LRIWDVILARQIDAIHV-DVSITALSLSP  608 (809)
Q Consensus       578 D~~---I~vwd~~~~~~i~~~~~-~~~v~~l~~sp  608 (809)
                      ++.   +.++++. |.....+.. ...+...+|+|
T Consensus       394 ~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        394 QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence            764   6777874 555555554 44588899987

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.56  E-value=3.6e-09  Score=123.12  Aligned_cols=478  Identities=14%  Similarity=0.099  Sum_probs=276.2

Q ss_pred             ccccEEEEEE--eCCEEEEEeCCCcEEEE----EcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579           92 HSAKVNLLLL--FGEHILSIDIDGNMFIW----AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL  165 (809)
Q Consensus        92 h~~~V~~l~~--~g~~l~s~~~dg~i~vW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l  165 (809)
                      ..+.|.++.+  +...|+.+..+|.|.+.    +..+...     .....-...+..+.|+||.  ..|+..+.+|++.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-----E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~  146 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-----EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLL  146 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-----EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEE
Confidence            3467888886  57788888899999998    3333322     1222234456677899999  88999999999888


Q ss_pred             EeCCCCceEE------------------------EEcC------------------------CCCCEEEEEEcCCCCEEE
Q 003579          166 WNISTKKKLY------------------------EFKG------------------------WGSSISSCVSSPALDVVA  197 (809)
Q Consensus       166 wd~~~~~~~~------------------------~~~~------------------------~~~~I~~l~~sp~~~~la  197 (809)
                      .+- +..++.                        .|+|                        +...-..++|-.||.++|
T Consensus       147 mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA  225 (928)
T PF04762_consen  147 MTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA  225 (928)
T ss_pred             Eec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence            742 222221                        1111                        122445788999999999


Q ss_pred             EEeC---C---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC---CCcEEEEECCCceeeeeeec---
Q 003579          198 VGCS---D---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIRE---  265 (809)
Q Consensus       198 ~g~~---d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~---dg~I~iwdl~~~~~~~~~~~---  265 (809)
                      +.+.   .   ..++||+-+ |+...+-. .-.+--.+++|.|.|. ++|+...   ...|.+|.- +|-....+..   
T Consensus       226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~  301 (928)
T PF04762_consen  226 VSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFD  301 (928)
T ss_pred             EEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCC
Confidence            9875   2   579999965 55333332 3245556899999999 7776653   456778874 3422222221   


Q ss_pred             ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEecc-CCCCCCeeEEEec-CCCEEEEEECCCCEEEEEe
Q 003579          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~  343 (809)
                      .....|..+.|++|+..|+..-.|. |.+|-..  +..+-+.+.+. .....+..+.|+| +...|.....+|.+..++.
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~--NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS--NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEecCC-ceEEEee--CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            3456899999999999999977665 9999543  22222222222 2233455699999 5566777777777776665


Q ss_pred             eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (809)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (809)
                      .-......                                ... ..+.-.++--+...+.+-.++...++..........
T Consensus       379 ~~~v~~s~--------------------------------~~~-~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~  425 (928)
T PF04762_consen  379 AWDVSRSP--------------------------------GSS-PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL  425 (928)
T ss_pred             EEEEEecC--------------------------------CCC-ccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence            32211100                                000 001112222334444444444433322222222233


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee--------eeeCc--ccccccCccccEEEEEEcCCCCEEEEEe
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--------SYLDM--SERSNYAHNGEVVGVACDSTNTLMISAG  493 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~--------~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~  493 (809)
                      +..|.+++|++++..+++-..+|.+.+|.........        .+...  .......-...+..++|..++..++...
T Consensus       426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (928)
T PF04762_consen  426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD  505 (928)
T ss_pred             CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence            5889999999999999999999999999965543221        11100  0000112245678888888887776666


Q ss_pred             Cc---CeEEEEECCCCc---eeeee-ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE-EEEEecCCCCeeeEEE
Q 003579          494 YH---GDIKVWDFKGRD---LKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCF  565 (809)
Q Consensus       494 ~d---g~i~iwd~~~~~---~~~~~-~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~-~~~~~~h~~~I~~l~f  565 (809)
                      .+   ..+.++++...+   ..... .....+..+...++...++.-..+|.+..++...... +..|..-...+..+.+
T Consensus       506 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~  585 (928)
T PF04762_consen  506 SDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQI  585 (928)
T ss_pred             cCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEE
Confidence            54   678888874332   22222 2234555555555555577777788888666554322 2223222222222222


Q ss_pred             CCCC--CEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          566 SEDG--KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       566 spdg--~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      ....  ..++.-+..|.+++    +++.+     ...|++.+.+  +.+|+.+.... .+++..+.
T Consensus       586 ~~~~~~~~~~GLs~~~~Ly~----n~~~l-----a~~~tSF~v~--~~~Ll~TT~~h-~l~fv~L~  639 (928)
T PF04762_consen  586 NGSEDKRVLFGLSSNGRLYA----NSRLL-----ASNCTSFAVT--DSFLLFTTTQH-TLKFVHLN  639 (928)
T ss_pred             CCccceeEEEEECCCCEEEE----CCEEE-----ecCCceEEEE--cCEEEEEecCc-eEEEEECc
Confidence            2221  13333344444432    22222     2568888874  55777666666 48888776

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.56  E-value=5.7e-13  Score=127.17  Aligned_cols=330  Identities=16%  Similarity=0.232  Sum_probs=212.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE----EE-EEeccC-----------CCcEEEEEEecCCC-CEEEEE
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE----LV-TFTHSM-----------RGAVTALAFSSDGQ-PLLASG  243 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~----~~-~~~~~~-----------~~~V~~l~fs~dg~-~~lasg  243 (809)
                      ..-|.++.|...|.+||+|..+|.|.++.-.....    .. .+..|.           ..+|..+.|.+++. ..+...
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            56789999999999999999999999997543221    22 222211           24788999988764 244455


Q ss_pred             cCCCcEEEEECCCcee-----------------------------------eeeeecccccceEEEEEecCCCEEEEEcC
Q 003579          244 ASSGVISIWNLEKRRL-----------------------------------QSVIREAHDNAIISLHFFANEPVLMSASA  288 (809)
Q Consensus       244 ~~dg~I~iwdl~~~~~-----------------------------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  288 (809)
                      +.|.+|++|-+.....                                   .+....+|.--|.++.+..|+..++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            6799999998754311                                   1222357888999999999999888875 


Q ss_pred             CCcEEEEEeeCCCCCceeEEeccC----CCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579          289 DNSIKMWIFDTTDGDPRLLRFRSG----HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (809)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~----h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  363 (809)
                      |=.|.+|+++..++...++.....    -..-|++..|+| .-+.++..+..|+|++.|++.....-....         
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK---------  254 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK---------  254 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh---------
Confidence            778999998877655544433221    123577888888 455777778889999998864322111000         


Q ss_pred             ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (809)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~  443 (809)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (433)
T KOG1354|consen  255 --------------------------------------------------------------------------------  254 (433)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC-CCceeeeeecC-------
Q 003579          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-------  515 (809)
Q Consensus       444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-------  515 (809)
                            +|..........+       ..+--..|..+.|++.|+++++-.. -+|++||+. ..+++.+++.+       
T Consensus       255 ------lfEepedp~~rsf-------fseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  255 ------LFEEPEDPSSRSF-------FSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             ------hhccccCCcchhh-------HHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence                  0000000000000       0134467889999999999998765 789999994 55666666543       


Q ss_pred             ---------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE-EEEEecCCCC--eeeEEECCCCCEEEEEeCCCeEEE
Q 003579          516 ---------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRI  583 (809)
Q Consensus       516 ---------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~-~~~~~~h~~~--I~~l~fspdg~~l~s~s~D~~I~v  583 (809)
                               -.-..++|+-++.++++|+.....++|+...|.. -.++......  ...+   ..-+.+.+++.....  
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~--  395 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRD--  395 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCcccc--
Confidence                     1223578998899999999999999999766533 2233322222  1111   112344444444331  


Q ss_pred             EEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEe
Q 003579          584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW  626 (809)
Q Consensus       584 wd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW  626 (809)
                           .-.+..+.....+...+|+|..+.+|.+..+.  ++++
T Consensus       396 -----~~~vd~ldf~kkilh~aWhp~en~ia~aatnn--lyif  431 (433)
T KOG1354|consen  396 -----EISVDALDFRKKILHTAWHPKENSIAVAATNN--LYIF  431 (433)
T ss_pred             -----ccccchhhhhhHHHhhccCCccceeeeeecCc--eEEe
Confidence                 22223344445577889999999999998875  6765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=3.2e-12  Score=139.18  Aligned_cols=232  Identities=15%  Similarity=0.072  Sum_probs=154.3

Q ss_pred             cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECC---CCEEEEEeeecccceecchhhHHHHHhhccch
Q 003579          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (809)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  367 (809)
                      .|.+||.+..  ..+   .+..+...+.+.+|+|||+.|+..+.+   ..|++|++..+.... +               
T Consensus       185 ~l~i~D~~g~--~~~---~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l---------------  243 (433)
T PRK04922        185 ALQVADSDGY--NPQ---TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V---------------  243 (433)
T ss_pred             EEEEECCCCC--Cce---EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e---------------
Confidence            5677765432  222   233566789999999999999987643   357788775432211 0               


Q ss_pred             hhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-eCCC
Q 003579          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG  446 (809)
Q Consensus       368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-~~~g  446 (809)
                                                                        .   ...+...+..|+|+|+.+++. +.+|
T Consensus       244 --------------------------------------------------~---~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        244 --------------------------------------------------A---SFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             --------------------------------------------------c---cCCCCccCceECCCCCEEEEEEeCCC
Confidence                                                              0   011334467999999987654 4455


Q ss_pred             --cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cCe--EEEEECCCCceeeeeecCCCeEEE
Q 003579          447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGD--IKVWDFKGRDLKSRWEVGCSLVKI  521 (809)
Q Consensus       447 --~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~i~~~  521 (809)
                        .|++||+.++......         .+.......+|+|+|+.++.++. +|.  |.++++.+++..............
T Consensus       271 ~~~Iy~~d~~~g~~~~lt---------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~  341 (433)
T PRK04922        271 NPEIYVMDLGSRQLTRLT---------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA  341 (433)
T ss_pred             CceEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence              6999999888754321         44445567899999998887763 444  777777777654433333445578


Q ss_pred             EEeeCCCEEEEEeCCC---eEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCC---CeEEEEEcCCccEEEEe
Q 003579          522 VYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAI  595 (809)
Q Consensus       522 ~~s~~~~~la~~~~d~---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D---~~I~vwd~~~~~~i~~~  595 (809)
                      +|+|+|++++..+.++   .|++||+.+++.. .+. +........|+|||++|+..+.+   +.|.++++. |.....+
T Consensus       342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l  418 (433)
T PRK04922        342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL  418 (433)
T ss_pred             EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence            9999999998876543   6999999888754 343 33345678999999998877653   468888885 4445555


Q ss_pred             ee-CcceEEEEEcC
Q 003579          596 HV-DVSITALSLSP  608 (809)
Q Consensus       596 ~~-~~~v~~l~~sp  608 (809)
                      .. ...+...+|+|
T Consensus       419 ~~~~g~~~~p~wsp  432 (433)
T PRK04922        419 VSADGEVREPAWSP  432 (433)
T ss_pred             ccCCCCCCCCccCC
Confidence            43 34577788887

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.9e-11  Score=127.24  Aligned_cols=519  Identities=12%  Similarity=0.118  Sum_probs=318.8

Q ss_pred             CCCCcEEEEEeCCeEEEEECCe---EEEEECCee-----------------EEEEccccccEEEEEEe--CCEEEEEeCC
Q 003579           55 LPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ-----------------VATWSRHSAKVNLLLLF--GEHILSIDID  112 (809)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~~-----------------~~~~~~h~~~V~~l~~~--g~~l~s~~~d  112 (809)
                      ......|+++..+.-|+|+|+.   +.|.+.++.                 -.++.||++.|.-+.|+  .+.|-+.+.+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            3456789999999999999876   677753221                 12378999999999995  5678888889


Q ss_pred             CcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEE--EEcCCCCCEEEEEEc
Q 003579          113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY--EFKGWGSSISSCVSS  190 (809)
Q Consensus       113 g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~--~~~~~~~~I~~l~~s  190 (809)
                      |.|.||=+-.+.-.-..+.  .-....+.++.|..+|  .+|.....||.|.+=.++. ..+.  .+++  .....+.|+
T Consensus        93 GlIiVWmlykgsW~EEMiN--nRnKSvV~SmsWn~dG--~kIcIvYeDGavIVGsvdG-NRIwgKeLkg--~~l~hv~ws  165 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMIN--NRNKSVVVSMSWNLDG--TKICIVYEDGAVIVGSVDG-NRIWGKELKG--QLLAHVLWS  165 (1189)
T ss_pred             ceEEEEeeecccHHHHHhh--CcCccEEEEEEEcCCC--cEEEEEEccCCEEEEeecc-ceecchhcch--heccceeec
Confidence            9999998876653111010  0123445666777788  7888888888887766643 3332  1222  334578899


Q ss_pred             CCCCEEEEEeCCCeEEEEEeeCCe-------EEEEEec---cCCCcEEEEEEe--------cCCCCEEEEEcCCCcEEEE
Q 003579          191 PALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTH---SMRGAVTALAFS--------SDGQPLLASGASSGVISIW  252 (809)
Q Consensus       191 p~~~~la~g~~dg~i~iwd~~~~~-------~~~~~~~---~~~~~V~~l~fs--------~dg~~~lasg~~dg~I~iw  252 (809)
                      +|.+.+..+-.+|.++++|-...-       +.....+   .....|..+.|.        ||.. .|+++..+|.+.|.
T Consensus       166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIM  244 (1189)
T ss_pred             ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhh
Confidence            999999999999999999975321       1111111   112245666664        3444 89999999999988


Q ss_pred             ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCC---------cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEe
Q 003579          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (809)
Q Consensus       253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~---------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (809)
                      .-++......+.  ..-.+....|+++|..|+.+|.|.         .|.++.     .-...+..+.-....|++++|-
T Consensus       245 R~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvpg~~It~lsWE  317 (1189)
T KOG2041|consen  245 RSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVPGSCITGLSWE  317 (1189)
T ss_pred             hhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecCCceeeeeEEc
Confidence            766554444444  235689999999999999998653         344431     1224566666677889999998


Q ss_pred             cCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec----CC
Q 003579          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM----DT  399 (809)
Q Consensus       324 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~  399 (809)
                      ..|-.++.+ .|+.|.+=+++..-.-..+.                                    ..++....    -.
T Consensus       318 g~gLriA~A-vdsfiyfanIRP~ykWgy~e------------------------------------~TvVy~y~~~e~p~  360 (1189)
T KOG2041|consen  318 GTGLRIAIA-VDSFIYFANIRPEYKWGYIE------------------------------------ETVVYVYQKEELPQ  360 (1189)
T ss_pred             CCceEEEEE-ecceEEEEeecccceEEEee------------------------------------eEEEEEEccCCCcc
Confidence            877666655 46677766654332111110                                    01111111    12


Q ss_pred             ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee---CcccccccCcccc
Q 003579          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL---DMSERSNYAHNGE  476 (809)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~---~~~~~~~~~h~~~  476 (809)
                      ..+..||..+...-...       -....++++..+--.++.-..+|.+.-++.-....+.-+.   ......+...-..
T Consensus       361 y~i~Fwdtk~nek~vK~-------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytd  433 (1189)
T KOG2041|consen  361 YGIMFWDTKTNEKTVKT-------VTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTD  433 (1189)
T ss_pred             eEEEEEecccChhhhhh-------hcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcce
Confidence            45667777654321111       1334456666666666666677777665322111111110   0000000111112


Q ss_pred             EEEEEEcCCCCEEEEEeCcCeEEEEECCCCcee-------------------------eee--------ecCCCeEEEEE
Q 003579          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-------------------------SRW--------EVGCSLVKIVY  523 (809)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~--------~~~~~i~~~~~  523 (809)
                      |.-.-+.-++..++.++.+ .+.+|.+...+..                         ..+        ....+|..++.
T Consensus       434 irP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~  512 (1189)
T KOG2041|consen  434 IRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCI  512 (1189)
T ss_pred             eeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeee
Confidence            2222222345566666664 5678865432111                         011        11256666666


Q ss_pred             eeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcC---CccEEEEee-eC-
Q 003579          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAIH-VD-  598 (809)
Q Consensus       524 s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~---~~~~i~~~~-~~-  598 (809)
                      +  .+++.++-..|.|+-|.+...-+..... -...|..+...-+...++.-..-|.+.+.|+.   +|..+..+. .. 
T Consensus       513 s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~er  589 (1189)
T KOG2041|consen  513 S--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSER  589 (1189)
T ss_pred             c--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhh
Confidence            5  6788899999999999998776555443 34678899998888888887778888888886   466665443 33 


Q ss_pred             cceEEEEEcCCCCeEEEEEeCCCeEEEeecCcccCCCCC
Q 003579          599 VSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN  637 (809)
Q Consensus       599 ~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~  637 (809)
                      ..|+.+.|..|+..|..--... .+++++....-.|++.
T Consensus       590 rDVWd~~Wa~dNp~llAlmeKt-rmyifrgndpeEp~s~  627 (1189)
T KOG2041|consen  590 RDVWDYEWAQDNPNLLALMEKT-RMYIFRGNDPEEPSSV  627 (1189)
T ss_pred             hhhhhhhhccCCchHHhhhhhc-eEEEecCcCccccccc
Confidence            3499999999887666555444 4999988766666653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=6.3e-11  Score=115.39  Aligned_cols=273  Identities=14%  Similarity=0.234  Sum_probs=189.7

Q ss_pred             CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECC---CCEEEEEeeec-ccceecchhhHHHHHhhc
Q 003579          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQD-QQSRELSQRHVAKRARKL  364 (809)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~~wd~~~~-~~~~~~~~~~~~~~~~~~  364 (809)
                      +.-|.+|++++..+....+.. ..+...++-++++|++++|.++..+   |.+..|.+... .....+            
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l------------   81 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL------------   81 (346)
T ss_pred             CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe------------
Confidence            567999999977765444433 3567788999999999999988655   55666665432 111111            


Q ss_pred             cchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe-
Q 003579          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-  443 (809)
Q Consensus       365 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~-  443 (809)
                                                               +            .......+.+.++++++|++++++. 
T Consensus        82 -----------------------------------------n------------~~~~~g~~p~yvsvd~~g~~vf~AnY  108 (346)
T COG2706          82 -----------------------------------------N------------RQTLPGSPPCYVSVDEDGRFVFVANY  108 (346)
T ss_pred             -----------------------------------------e------------ccccCCCCCeEEEECCCCCEEEEEEc
Confidence                                                     0            0001113448899999999998875 


Q ss_pred             CCCcEEEEECCC-CceeeeeeCcccccccCcccc----------EEEEEEcCCCCEEEEEeC-cCeEEEEECCCCceeee
Q 003579          444 AGGWIERFNLQS-GISRGSYLDMSERSNYAHNGE----------VVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKSR  511 (809)
Q Consensus       444 ~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~  511 (809)
                      ..|.|.++-++. |........      ..|.+.          +....+.|++++|+++.. --.|.+|++..+++...
T Consensus       109 ~~g~v~v~p~~~dG~l~~~v~~------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~  182 (346)
T COG2706         109 HSGSVSVYPLQADGSLQPVVQV------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA  182 (346)
T ss_pred             cCceEEEEEcccCCccccceee------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence            458999999966 443332211      123333          788899999999998873 34699999998876543


Q ss_pred             e----ecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCC-eEEEEEec---------CCCCeeeEEECCCCCEEEEEe
Q 003579          512 W----EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVAL-RMVRKFEG---------HTDRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       512 ~----~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~-~~~~~~~~---------h~~~I~~l~fspdg~~l~s~s  576 (809)
                      -    +.+.....++|||++++..+.++ +++|-+|..+.. ..+..++.         -.....+|..+||||+|.++.
T Consensus       183 ~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN  262 (346)
T COG2706         183 DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN  262 (346)
T ss_pred             cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence            3    44588899999999999888776 899999998873 22333322         234567899999999998775


Q ss_pred             C-CCeEEEEEcCCc-cEEEEe---eeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEeecCcccC
Q 003579          577 M-DGSLRIWDVILA-RQIDAI---HVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS  633 (809)
Q Consensus       577 ~-D~~I~vwd~~~~-~~i~~~---~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~  633 (809)
                      . ...|-++.+... ..+...   ..+.. .....|+|+|++|+.++.++..|.++.....-.
T Consensus       263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG  325 (346)
T COG2706         263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG  325 (346)
T ss_pred             CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence            2 336888877542 223222   22333 889999999999999999988899998764443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.4e-12  Score=141.30  Aligned_cols=178  Identities=15%  Similarity=0.141  Sum_probs=123.2

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCC
Q 003579          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (809)
Q Consensus       161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~  237 (809)
                      ..|.++|. +|+....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +... .+.+.+.+|+|||+
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~-~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF-KGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC-CCCccceEECCCCC
Confidence            36777786 455555666778899999999999999887643   469999999887543 3222 45677899999998


Q ss_pred             CEEEEEcCCCcEEEE--ECCCceeeeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCC
Q 003579          238 PLLASGASSGVISIW--NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS  314 (809)
Q Consensus       238 ~~lasg~~dg~I~iw--dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (809)
                      .++++.+.+|...||  |+.++. ...+. .+........|+|||+.|+..+. ++...+|.++...+..+.+. ..+  
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g--  327 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTG--  327 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCC--
Confidence            555567777775555  555554 33443 35555677899999998776554 57888998876554433332 222  


Q ss_pred             CCCeeEEEecCCCEEEEEECCC---CEEEEEeeec
Q 003579          315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD  346 (809)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg---~i~~wd~~~~  346 (809)
                      .......|+|||++|+..+.++   .|.+||+.++
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            2334678999999998777654   4777776543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=9e-13  Score=125.16  Aligned_cols=148  Identities=20%  Similarity=0.354  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCEEEEEeC----------cCeEEEEECC-CCceeeeeec--CCCeEEEEEeeCCCEEEEEe--CCCeEEEE
Q 003579          478 VGVACDSTNTLMISAGY----------HGDIKVWDFK-GRDLKSRWEV--GCSLVKIVYHRVNGLLATVA--DDLVIRLF  542 (809)
Q Consensus       478 ~~l~~~~~~~~l~s~~~----------dg~i~iwd~~-~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~--~d~~I~v~  542 (809)
                      ..+.|+++|.+|+.-..          -|...+|.++ .......+..  ..+|..++|+|+|+.+|+..  .+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45778888876664432          1334455542 2234444443  35799999999999876653  56799999


Q ss_pred             EcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC---CCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeC
Q 003579          543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  619 (809)
Q Consensus       543 d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~---D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d  619 (809)
                      |++ ++.+..+.  ...++.+.|||+|++|++++.   .|.|.+||+.+.+.+..+.+. .++.++|||||++|+++...
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence            997 66666664  567889999999999999874   467999999999998887654 47899999999999999863


Q ss_pred             -----CCeEEEeecC
Q 003579          620 -----QNGVYLWVNR  629 (809)
Q Consensus       620 -----~~~i~lW~~~  629 (809)
                           +++++||+..
T Consensus       165 ~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cceeccccEEEEEec
Confidence                 3479999964

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.53  E-value=7.9e-13  Score=126.36  Aligned_cols=336  Identities=15%  Similarity=0.192  Sum_probs=223.8

Q ss_pred             CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEe-eCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV-RYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (809)
Q Consensus       171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~-~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I  249 (809)
                      ..+++.++||...|+....-|...-+.+.+.|.+++||-- ..++.-..+.+....+++++++.++.. .|++|-.+|++
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv   92 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV   92 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence            3456678899999999988898888999999999999953 455655555555568999999999988 89999999999


Q ss_pred             EEEECCCc----eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC
Q 003579          250 SIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (809)
Q Consensus       250 ~iwdl~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (809)
                      .-+.+...    ...+... .|...+..+-|+-...++++.+.|..+.---.+.+.........     .+.+++.+.-.
T Consensus        93 tefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-----~~~t~~~~d~~  166 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-----TPASALQFDAL  166 (404)
T ss_pred             EEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-----ccCCCCceeeE
Confidence            98876543    3444444 89999999999998889999999987653322222211111110     11111111111


Q ss_pred             CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (809)
Q Consensus       326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (809)
                        +...|...|.+....+....                                                          
T Consensus       167 --~~fvGd~~gqvt~lr~~~~~----------------------------------------------------------  186 (404)
T KOG1409|consen  167 --YAFVGDHSGQITMLKLEQNG----------------------------------------------------------  186 (404)
T ss_pred             --EEEecccccceEEEEEeecC----------------------------------------------------------
Confidence              33344444444444332211                                                          


Q ss_pred             EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (809)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  485 (809)
                              -..+....+|...+++++|.+....+.+|.+|..+.+||+..........       .+|...|..+...+-
T Consensus       187 --------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------~gh~~kV~~l~~~~~  251 (404)
T KOG1409|consen  187 --------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------QGHNDKVQALSYAQH  251 (404)
T ss_pred             --------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee-------ccchhhhhhhhhhhh
Confidence                    11122233567899999999999999999999999999998776655443       599999999999888


Q ss_pred             CCEEEEEeCcCeEEEEECCCCceee------------------------------eeecC----CCeEEEEEeeCCCEEE
Q 003579          486 NTLMISAGYHGDIKVWDFKGRDLKS------------------------------RWEVG----CSLVKIVYHRVNGLLA  531 (809)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~~~~~------------------------------~~~~~----~~i~~~~~s~~~~~la  531 (809)
                      -+.+++++.||.|.+|+.+......                              ...++    +...+..-+.......
T Consensus       252 t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p  331 (404)
T KOG1409|consen  252 TRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYP  331 (404)
T ss_pred             heeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccc
Confidence            8999999999999999987432110                              00011    1111111122222222


Q ss_pred             EEeCCCeEEEEEcCC-------CeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579          532 TVADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       532 ~~~~d~~I~v~d~~~-------~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~  588 (809)
                      +.+....+|+-|.--       ...+..+..-...|+.+.+..+-.+|+|++.|+.|+|||+..
T Consensus       332 ~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  332 TMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            223334555544321       123444443345699999998888999999999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.7e-12  Score=141.28  Aligned_cols=178  Identities=16%  Similarity=0.137  Sum_probs=123.9

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCC
Q 003579          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (809)
Q Consensus       161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~  237 (809)
                      ..|.+||.. +...+.+..+...+.+.+|+||++.|+..+.+   ..|.+||+.+++.... ... .+...+.+|+|||+
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~-~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASF-RGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccC-CCCccCceECCCCC
Confidence            368999985 44455566677889999999999999987643   4799999988765432 222 44566899999999


Q ss_pred             CEEEEEcCCC--cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579          238 PLLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (809)
Q Consensus       238 ~~lasg~~dg--~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (809)
                      .++++.+.+|  .|.+||+.+++... +. .+.......+|+||++.|+.++ .++...+|.++..++..+.+. .  +.
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~--~g  335 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-F--QG  335 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-c--CC
Confidence            5555656555  69999999887543 33 4555567889999999887766 456666776665444333332 2  22


Q ss_pred             CCCeeEEEecCCCEEEEEECCC---CEEEEEeeec
Q 003579          315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD  346 (809)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg---~i~~wd~~~~  346 (809)
                      ......+|+|||++|+..+.++   .|.+|++.++
T Consensus       336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            3345789999999998765443   4777776443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=6e-12  Score=136.47  Aligned_cols=239  Identities=12%  Similarity=0.104  Sum_probs=154.0

Q ss_pred             CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEc-C--CCcEEEEECCCceeeeeeecccccceEEEEEecC
Q 003579          203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA-S--SGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (809)
Q Consensus       203 g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~-~--dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~  279 (809)
                      ..|.++|.. +.....+..+ ...+.+.+|+|||+ .|+..+ .  ...|.+||+.+++.... . ...+.+.+..|+||
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l-~-~~~g~~~~~~~SPD  250 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSS-PEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVV-A-NFKGSNSAPAWSPD  250 (427)
T ss_pred             cEEEEECCC-CCCceEeccC-CCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEe-e-cCCCCccceEECCC
Confidence            457777764 4444444443 57899999999998 555544 2  24699999998865433 2 23455678999999


Q ss_pred             CCEEE-EEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC-CCCEEEEEeeecccceecchhhH
Q 003579          280 EPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHV  357 (809)
Q Consensus       280 ~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~  357 (809)
                      ++.|+ +.+.++...+|.++...+..   +.+..+........|+|||+.|+..+. ++...+|.+....          
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~----------  317 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG----------  317 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC----------
Confidence            98776 56778989999887654432   333445555677889999998886654 4555565542110          


Q ss_pred             HHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCC
Q 003579          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (809)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~  437 (809)
                                                                                                      
T Consensus       318 --------------------------------------------------------------------------------  317 (427)
T PRK02889        318 --------------------------------------------------------------------------------  317 (427)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC---eEEEEECCCCceeeeeec
Q 003579          438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEV  514 (809)
Q Consensus       438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~  514 (809)
                                        +......         .+.......+|+|+|++++..+.++   .|.+||+.+++..... .
T Consensus       318 ------------------g~~~~lt---------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~  369 (427)
T PRK02889        318 ------------------GAAQRVT---------FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D  369 (427)
T ss_pred             ------------------CceEEEe---------cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C
Confidence                              0000000         0001112346677777766555443   5888888877654332 2


Q ss_pred             CCCeEEEEEeeCCCEEEEEeCCC---eEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579          515 GCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (809)
Q Consensus       515 ~~~i~~~~~s~~~~~la~~~~d~---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd  568 (809)
                      ........|+|||+.|+.++.++   .+++.+. +++..+.+..+.+.+...+|+|-
T Consensus       370 ~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        370 TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            33346779999999998887654   4666677 46667777777788888999884

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=7.7e-12  Score=136.43  Aligned_cols=175  Identities=13%  Similarity=0.118  Sum_probs=122.2

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCC
Q 003579          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (809)
Q Consensus       161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~  237 (809)
                      ..|.++|.. +.....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+... .+.+.+.+|+|||+
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~-~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNF-PGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecC-CCcccCcEECCCCC
Confidence            378899974 4555667778889999999999999988763   468999999888653 33332 56788999999999


Q ss_pred             CEEEEEcCCCc--EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579          238 PLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (809)
Q Consensus       238 ~~lasg~~dg~--I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (809)
                      .++++.+.+|.  |.+||+.++.... +. .+........|+||++.|+..+ .++...+|.++...+..+.+.   .+.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---~~~  333 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---FGG  333 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---cCC
Confidence            55566665554  8888998876544 33 4556677899999999887766 345445555554443333332   233


Q ss_pred             CCCeeEEEecCCCEEEEEECCC---CEEEEEe
Q 003579          315 APPLCIRFYANGRHILSAGQDR---AFRLFSV  343 (809)
Q Consensus       315 ~~v~~i~~~~~~~~l~s~~~dg---~i~~wd~  343 (809)
                      ..+....|+|+|+.|+..+.++   .|.+|++
T Consensus       334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             CcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence            4466788999999998776542   3555554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.50  E-value=4.3e-11  Score=120.60  Aligned_cols=334  Identities=15%  Similarity=0.213  Sum_probs=219.1

Q ss_pred             EEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEE
Q 003579          206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS  285 (809)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  285 (809)
                      ..|+-.+...-..+.. ..-++...+|||.|. +|++... ..|.+|.-.....+..+.  | ..|..+.|+|++++|++
T Consensus        15 ~f~~~~s~~~~~~~~~-~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~t   88 (561)
T COG5354          15 VFWNSQSEVIHTRFES-ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVT   88 (561)
T ss_pred             EeecCccccccccccc-cCcchhheeecCcch-heehhhc-cceEEccccchhheeeee--c-CCceecccCcccceeee
Confidence            4455544444444443 256899999999999 7776554 459999988777555554  3 46899999999999998


Q ss_pred             EcC---------------CCcEEEEEeeCCCCCceeEEeccCCCCC--Ce-eEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579          286 ASA---------------DNSIKMWIFDTTDGDPRLLRFRSGHSAP--PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (809)
Q Consensus       286 ~s~---------------d~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~-~i~~~~~~~~l~s~~~dg~i~~wd~~~~~  347 (809)
                      =+.               ++.+.+||...+    .++..+.+-..+  .. -+.|+-+.++++-.. ...+.++++ ++.
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg----~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n  162 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASG----MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDN  162 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCc----eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCc
Confidence            653               335889987765    677777666555  44 567777776666442 235788876 221


Q ss_pred             cceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCe
Q 003579          348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  427 (809)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v  427 (809)
                      .. ....              ..++                                                   ...+
T Consensus       163 ~~-~~p~--------------~~lr---------------------------------------------------~~gi  176 (561)
T COG5354         163 IE-EHPF--------------KNLR---------------------------------------------------PVGI  176 (561)
T ss_pred             cc-cCch--------------hhcc---------------------------------------------------ccce
Confidence            11 0000              0000                                                   1445


Q ss_pred             EEEEEcCCCCE--EEE-----EeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe-------
Q 003579          428 KACTISACGNF--AVL-----GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-------  493 (809)
Q Consensus       428 ~~v~~s~~g~~--l~~-----g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-------  493 (809)
                      ....++|.|+.  ++.     +...+.+++|.+..+..+..-.        -....=..+.|.+.|++++.--       
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--------lfk~~~~qLkW~~~g~~ll~l~~t~~ksn  248 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--------LFKVSGVQLKWQVLGKYLLVLVMTHTKSN  248 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--------eEeecccEEEEecCCceEEEEEEEeeecc
Confidence            55566665432  222     3455678888887665554332        1222234566777777665321       


Q ss_pred             ----CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEe--CCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC
Q 003579          494 ----YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (809)
Q Consensus       494 ----~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp  567 (809)
                          ....++++++............++|...+|.|.++.+++.+  .+..+.++|++.. ++  +......=+.+.|||
T Consensus       249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp  325 (561)
T COG5354         249 KSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP  325 (561)
T ss_pred             cceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC
Confidence                23568888888665555556679999999999998777665  6788999999865 33  334455667789999


Q ss_pred             CCCEEEEEeCC---CeEEEEEcCCccEEE-EeeeCcceEEEEEcCCCCeEEEEEeC-----CCeEEEeecC
Q 003579          568 DGKWLLSSGMD---GSLRIWDVILARQID-AIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVNR  629 (809)
Q Consensus       568 dg~~l~s~s~D---~~I~vwd~~~~~~i~-~~~~~~~v~~l~~spdg~~lat~~~d-----~~~i~lW~~~  629 (809)
                      .++|++.++-|   |.|-+||......+. .+. ....+-+.|||||+|+-++...     +++|.||++-
T Consensus       326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             cccEEEEecCCccccceEEeccCCceEEEEEee-cCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            99999998865   679999987654444 333 3346677899999998887542     2379999974

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=8.7e-12  Score=136.00  Aligned_cols=233  Identities=15%  Similarity=0.133  Sum_probs=155.9

Q ss_pred             cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC---CCCEEEEEeeecccceecchhhHHHHHhhccch
Q 003579          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (809)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  367 (809)
                      .|.+||.+..  .   .+.+..|...+.+.+|+|||+.|+..+.   +..|.+|++.++... .+               
T Consensus       183 ~l~~~d~dg~--~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l---------------  241 (435)
T PRK05137        183 RLAIMDQDGA--N---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV---------------  241 (435)
T ss_pred             EEEEECCCCC--C---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee---------------
Confidence            4555554332  2   2334467788999999999999887763   356888887544221 00               


Q ss_pred             hhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-eCCC
Q 003579          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG  446 (809)
Q Consensus       368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-~~~g  446 (809)
                                                                        .   .....+.+.+|+|||+.++.. +.+|
T Consensus       242 --------------------------------------------------~---~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        242 --------------------------------------------------G---NFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             --------------------------------------------------e---cCCCcccCcEECCCCCEEEEEEecCC
Confidence                                                              0   112455678999999987654 4454


Q ss_pred             --cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cC--eEEEEECCCCceeeeeecCCCeEEE
Q 003579          447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKI  521 (809)
Q Consensus       447 --~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~  521 (809)
                        .|+++|+.++.... +        ..+........|+|+|+.++..+. +|  .|+++|+.+++..............
T Consensus       269 ~~~Iy~~d~~~~~~~~-L--------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~  339 (435)
T PRK05137        269 NTDIYTMDLRSGTTTR-L--------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP  339 (435)
T ss_pred             CceEEEEECCCCceEE-c--------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence              47788988876543 2        245555677899999998887763 33  6888898877665444444556778


Q ss_pred             EEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCC------CeEEEEEcCCccEE
Q 003579          522 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD------GSLRIWDVILARQI  592 (809)
Q Consensus       522 ~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D------~~I~vwd~~~~~~i  592 (809)
                      .|+|+|+.|+....+   ..|.+||+.++.. +.+. +...+....|+|||++|+..+.+      ..+.++|+..+.. 
T Consensus       340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-  416 (435)
T PRK05137        340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-  416 (435)
T ss_pred             EECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence            899999999887653   4688899866543 3333 23357789999999998866543      2578888876554 


Q ss_pred             EEeeeCcceEEEEEcCC
Q 003579          593 DAIHVDVSITALSLSPN  609 (809)
Q Consensus       593 ~~~~~~~~v~~l~~spd  609 (809)
                      ..+.....+...+|+|-
T Consensus       417 ~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        417 REVPTPGDASDPAWSPL  433 (435)
T ss_pred             EEccCCCCccCcccCCC
Confidence            44444444777788763

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.50  E-value=2.6e-12  Score=121.97  Aligned_cols=159  Identities=18%  Similarity=0.265  Sum_probs=116.5

Q ss_pred             CeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCC-ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE--
Q 003579          426 AVKACTISACGNFAVLGTA----------GGWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--  492 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g~~----------~g~i~i~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--  492 (809)
                      .-..+.|+++|++|++-..          -|...+|.+... .....+.       ....++|.+++|+|+|+.+++.  
T Consensus         7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-------l~~~~~I~~~~WsP~g~~favi~g   79 (194)
T PF08662_consen    7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-------LKKEGPIHDVAWSPNGNEFAVIYG   79 (194)
T ss_pred             ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-------ccCCCceEEEEECcCCCEEEEEEc
Confidence            3356788999988877554          133445544221 2222221       1345679999999999887654  


Q ss_pred             eCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeC---CCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCC
Q 003579          493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG  569 (809)
Q Consensus       493 ~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~---d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg  569 (809)
                      ..++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++.   .|.|.+||+++.+.+.++. |. .++.++|||||
T Consensus        80 ~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG  155 (194)
T PF08662_consen   80 SMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG  155 (194)
T ss_pred             cCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence            367899999997 56666554 467789999999999999874   4679999999999888775 33 47899999999


Q ss_pred             CEEEEEeC------CCeEEEEEcCCccEEEEee
Q 003579          570 KWLLSSGM------DGSLRIWDVILARQIDAIH  596 (809)
Q Consensus       570 ~~l~s~s~------D~~I~vwd~~~~~~i~~~~  596 (809)
                      ++|++++.      |..++||+.. |+++....
T Consensus       156 r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  156 RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            99998863      7889999985 77766543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.48  E-value=4.4e-10  Score=114.63  Aligned_cols=278  Identities=9%  Similarity=-0.007  Sum_probs=179.5

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEEeeCCeEEEEEeccCC------
Q 003579          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS----------DGKIHVHNVRYDEELVTFTHSMR------  224 (809)
Q Consensus       161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~----------dg~i~iwd~~~~~~~~~~~~~~~------  224 (809)
                      ++|.+.|..+++.+..+..-..+- .+ +|||++.|+++..          +..|.+||..+.+.+.++..+..      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999999887533333 24 9999999988866          68999999999999999886422      


Q ss_pred             CcEEEEEEecCCCCEEEEEc-C-CCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCC
Q 003579          225 GAVTALAFSSDGQPLLASGA-S-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (809)
Q Consensus       225 ~~V~~l~fs~dg~~~lasg~-~-dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~  302 (809)
                      .....++++|||+ +|++.. . +..|.+.|+.+++.+..+..  .+...-...+++. .+ +-+.||......++....
T Consensus       105 ~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       105 TYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGN  179 (352)
T ss_pred             CccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCc-cE-EEeecCceEEEEecCCCc
Confidence            1234889999999 555444 4 78999999999999998873  1111212222222 22 223455555444433221


Q ss_pred             CceeEE--eccCCCCCC-eeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeE
Q 003579          303 DPRLLR--FRSGHSAPP-LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (809)
Q Consensus       303 ~~~~~~--~~~~h~~~v-~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (809)
                       .....  .+.+...++ ..-.|.+ +|+++..... |.|.+.|+.........                          
T Consensus       180 -~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------------------------  231 (352)
T TIGR02658       180 -PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------------------------  231 (352)
T ss_pred             -eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------------------------
Confidence             11110  111100000 0004566 7877777666 99999996543321110                          


Q ss_pred             EeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe----------CCCcE
Q 003579          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----------AGGWI  448 (809)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~----------~~g~i  448 (809)
                                               .|..-......     ..-.+....-++++++|+.+++..          ..+.|
T Consensus       232 -------------------------~~~~~~~~~~~-----~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V  281 (352)
T TIGR02658       232 -------------------------AIEAFTEAEKA-----DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL  281 (352)
T ss_pred             -------------------------eeeeccccccc-----cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence                                     01110000000     001124455599999999999853          22479


Q ss_pred             EEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC-EEEEEe-CcCeEEEEECCCCceeeee
Q 003579          449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRW  512 (809)
Q Consensus       449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  512 (809)
                      .++|..+++....+.         -...+.+++++||++ +|++.. .++.|.+.|..+++.+..+
T Consensus       282 ~ViD~~t~kvi~~i~---------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       282 FVVDAKTGKRLRKIE---------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEECCCCeEEEEEe---------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            999999999998875         245789999999999 777666 6788999999999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.47  E-value=5.2e-12  Score=120.84  Aligned_cols=248  Identities=18%  Similarity=0.290  Sum_probs=182.1

Q ss_pred             EEEEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeE
Q 003579           86 VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (809)
Q Consensus        86 ~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i  163 (809)
                      +..++||.+.|+....  -...+++++.|.+++||--.........+...  -........+++..  .+|++|-..|++
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e~--~~L~vg~~ngtv   92 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSES--RRLYVGQDNGTV   92 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh--CCCCceEeeeeccc--eEEEEEEecceE
Confidence            3447899888887653  56789999999999999654433322222111  12233445577777  789999999999


Q ss_pred             EEEeCC----CCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCE
Q 003579          164 QLWNIS----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL  239 (809)
Q Consensus       164 ~lwd~~----~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~  239 (809)
                      .-+.+.    ....++....|...|..+-|+....++++.+.|..+.-.-.+.+..+..+...  ...+++.|.-.   +
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~---~  167 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL---Y  167 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE---E
Confidence            888653    34456667789999999999999999999999988877667777665544432  12222322222   4


Q ss_pred             EEEEcCCCcEEEEECCC--ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579          240 LASGASSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (809)
Q Consensus       240 lasg~~dg~I~iwdl~~--~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (809)
                      ...|...|.|.+-.+..  -.++.++. +|.+.+.+++|.+...+|+++..|..+.+||+-...+   ......+|...|
T Consensus       168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~~kV  243 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG---TAYELQGHNDKV  243 (404)
T ss_pred             EEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc---eeeeeccchhhh
Confidence            45566667666655443  35666666 9999999999999999999999999999999876653   344567999999


Q ss_pred             eeEEEecCCCEEEEEECCCCEEEEEeeec
Q 003579          318 LCIRFYANGRHILSAGQDRAFRLFSVIQD  346 (809)
Q Consensus       318 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~  346 (809)
                      ..+.+.+--+.+++++.||.|.+|+....
T Consensus       244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  244 QALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            99999998899999999999999998644

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=1.3e-09  Score=111.27  Aligned_cols=281  Identities=13%  Similarity=0.111  Sum_probs=181.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEc---------CCCcEEEEECCCc
Q 003579          192 ALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEKR  257 (809)
Q Consensus       192 ~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~---------~dg~I~iwdl~~~  257 (809)
                      ++.++.+....     ++|.+.|..+++.+.++..+. .+ ..+ ++|||+.+.++.+         .+..|.+||..+.
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~-~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~   87 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGF-LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH   87 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccC-CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence            44455554433     899999999999999998763 22 235 9999995555556         6889999999999


Q ss_pred             eeeeeeeccc------ccceEEEEEecCCCEEEEEc-C-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579          258 RLQSVIREAH------DNAIISLHFFANEPVLMSAS-A-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (809)
Q Consensus       258 ~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~s-~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (809)
                      +.+..+..+-      ......++++|||++|+... . ++.|.+.|+...    +.+....-           |++..+
T Consensus        88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~----kvv~ei~v-----------p~~~~v  152 (352)
T TIGR02658        88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK----AFVRMMDV-----------PDCYHI  152 (352)
T ss_pred             cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC----cEEEEEeC-----------CCCcEE
Confidence            9998887321      12334789999999888765 3 789999988766    34443322           333333


Q ss_pred             EEE--------ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCce
Q 003579          330 LSA--------GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (809)
Q Consensus       330 ~s~--------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  401 (809)
                      +..        +.||......+........-                                                .
T Consensus       153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~------------------------------------------------~  184 (352)
T TIGR02658       153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIK------------------------------------------------P  184 (352)
T ss_pred             EEecCCccEEEeecCceEEEEecCCCceEEe------------------------------------------------e
Confidence            332        23444433332221110000                                                0


Q ss_pred             EEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcee-----eeeeCcccccccCccc
Q 003579          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISR-----GSYLDMSERSNYAHNG  475 (809)
Q Consensus       402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~-----~~~~~~~~~~~~~h~~  475 (809)
                      ..+++..+    ...+    .  .+    .+++ +|+++.+... |.|.+.|+......     ..+.. ......-..+
T Consensus       185 ~~vf~~~~----~~v~----~--rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~~wrP~  248 (352)
T TIGR02658       185 TEVFHPED----EYLI----N--HP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKADGWRPG  248 (352)
T ss_pred             eeeecCCc----cccc----c--CC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc-cccccccCCC
Confidence            00000000    0000    0  11    3455 8888888877 99999996543322     11110 0000011334


Q ss_pred             cEEEEEEcCCCCEEEEEe----------CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCC-EEEEEe-CCCeEEEEE
Q 003579          476 EVVGVACDSTNTLMISAG----------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFD  543 (809)
Q Consensus       476 ~v~~l~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~d~~I~v~d  543 (809)
                      .+..++++++++.+....          ..+.|.++|..+++.+..+.....+..++++||++ +|++.+ .++.|.++|
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            455599999998888743          22579999999999999999999999999999999 777776 578899999


Q ss_pred             cCCCeEEEEEe
Q 003579          544 VVALRMVRKFE  554 (809)
Q Consensus       544 ~~~~~~~~~~~  554 (809)
                      ..+++.++++.
T Consensus       329 ~~t~k~i~~i~  339 (352)
T TIGR02658       329 AETGKELSSVN  339 (352)
T ss_pred             CcCCeEEeeec
Confidence            99999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=4.7e-11  Score=121.23  Aligned_cols=328  Identities=10%  Similarity=0.102  Sum_probs=205.0

Q ss_pred             EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEE
Q 003579          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (809)
Q Consensus       163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~las  242 (809)
                      ...||.........-...+-.=+-+.|||.|.||++-...| |.+|--++-..++.|.+.   .|.-+.|||..+ +|++
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp---~Vq~idfSP~Ek-YLVT  266 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP---GVQFIDFSPNEK-YLVT  266 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC---CceeeecCCccc-eEEE
Confidence            45677554332222122223346789999999999988766 889987777777777653   589999999998 7887


Q ss_pred             EcC-----------CCcEEEEECCCceeeeeeec--ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEe
Q 003579          243 GAS-----------SGVISIWNLEKRRLQSVIRE--AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (809)
Q Consensus       243 g~~-----------dg~I~iwdl~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~  309 (809)
                      -+.           ...++|||+.+|.+...+..  .....-.-..||.|+++++.-.. ++|.|++...    ..++..
T Consensus       267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps----f~lld~  341 (698)
T KOG2314|consen  267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS----FMLLDK  341 (698)
T ss_pred             ecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc----eeeecc
Confidence            652           25799999999988887762  11122235689999999998776 5788884332    233333


Q ss_pred             ccCCCCCCeeEEEecCCCEEEEEECC-----CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579          310 RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (809)
Q Consensus       310 ~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  384 (809)
                      ..-.-..|....|+|.++.|+.-...     ..+.+..+.+.+.++..                                
T Consensus       342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~--------------------------------  389 (698)
T KOG2314|consen  342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK--------------------------------  389 (698)
T ss_pred             cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec--------------------------------
Confidence            33345678888999987766643211     11222222222111110                                


Q ss_pred             cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE----------eCCCcEEEEECC
Q 003579          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG----------TAGGWIERFNLQ  454 (809)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g----------~~~g~i~i~~~~  454 (809)
                                        .++++                  .=..+-|-.+|.+|++-          +.-..+.||.+.
T Consensus       390 ------------------nlfnV------------------sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir  433 (698)
T KOG2314|consen  390 ------------------NLFNV------------------SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR  433 (698)
T ss_pred             ------------------cceee------------------eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence                              01111                  11123344555555542          112245566655


Q ss_pred             CCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC---cCeEEEEECCCC----ceeeeeecCCCeEEEEEeeCC
Q 003579          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKGR----DLKSRWEVGCSLVKIVYHRVN  527 (809)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~----~~~~~~~~~~~i~~~~~s~~~  527 (809)
                      .........        .-...|...+|.|.|..+++-+.   ..++.+|.+++.    +++..+.. ...+.+.|+|.|
T Consensus       434 eKdIpve~v--------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG  504 (698)
T KOG2314|consen  434 EKDIPVEVV--------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKG  504 (698)
T ss_pred             ccCCCceee--------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCC
Confidence            443332222        45678899999999987776553   356889988732    23333333 567889999999


Q ss_pred             CEEEEE---eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC
Q 003579          528 GLLATV---ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (809)
Q Consensus       528 ~~la~~---~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~  577 (809)
                      ++++++   +..|.+..+|+.-..+...-.......+.+.|.|.|||++|++.
T Consensus       505 ~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  505 RFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             cEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence            988876   45789999998753332222222234678999999999999874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.9e-10  Score=120.00  Aligned_cols=404  Identities=12%  Similarity=0.133  Sum_probs=260.0

Q ss_pred             EEeCCCCCCEEEEEeCCCeEEEEeCCCCc---------------eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 003579          144 IMHPDTYLNKVIVGSQEGSLQLWNISTKK---------------KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVH  208 (809)
Q Consensus       144 ~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---------------~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iw  208 (809)
                      .|+...  ++|++|+.||.+++..+.+..               .-+++.||...|..+.|..+.+.|-+...+|.|.+|
T Consensus        21 ~WNke~--gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW   98 (1189)
T KOG2041|consen   21 EWNKES--GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW   98 (1189)
T ss_pred             EEcccC--CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence            366666  889999999999999876432               235678999999999999999999999999999999


Q ss_pred             EeeCCeEEEEEe-ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc
Q 003579          209 NVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS  287 (809)
Q Consensus       209 d~~~~~~~~~~~-~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  287 (809)
                      -+-.|.-...+. ...++.|.+++|..||. .++....||.|.+=.++..+.-..-.  ...-...+.|++|...++.+-
T Consensus        99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~~~Lf~~  175 (1189)
T KOG2041|consen   99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLEQALFKK  175 (1189)
T ss_pred             eeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhc--chheccceeecccHHHHHhhh
Confidence            998776433322 22356899999999999 77888889998887776654432211  112244788999999888888


Q ss_pred             CCCcEEEEEeeCCCCC---cee-EE---eccCCCCCCeeEEEe--------cCCCEEEEEECCCCEEEEEeeecccceec
Q 003579          288 ADNSIKMWIFDTTDGD---PRL-LR---FRSGHSAPPLCIRFY--------ANGRHILSAGQDRAFRLFSVIQDQQSREL  352 (809)
Q Consensus       288 ~d~~i~vw~~~~~~~~---~~~-~~---~~~~h~~~v~~i~~~--------~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  352 (809)
                      .+|.+.++|....-..   ..+ +.   .+......+..+.|.        ||-..|+.+..+|.+.+..-.++.....+
T Consensus       176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~  255 (1189)
T KOG2041|consen  176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV  255 (1189)
T ss_pred             cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence            8899999975432100   001 10   111112224455553        36678888888888777654333221111


Q ss_pred             chhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEE
Q 003579          353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI  432 (809)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~  432 (809)
                      .                                                                     ..-.+....|
T Consensus       256 d---------------------------------------------------------------------tgm~~vgakW  266 (1189)
T KOG2041|consen  256 D---------------------------------------------------------------------TGMKIVGAKW  266 (1189)
T ss_pred             e---------------------------------------------------------------------cccEeeccee
Confidence            1                                                                     1145677889


Q ss_pred             cCCCCEEEEEeCCC---------cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC---------
Q 003579          433 SACGNFAVLGTAGG---------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---------  494 (809)
Q Consensus       433 s~~g~~l~~g~~~g---------~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---------  494 (809)
                      +++|.++++++.+.         .|.+|. .-|.....+.        -....|++++|-..|-.++.+-.         
T Consensus       267 nh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk--------vpg~~It~lsWEg~gLriA~AvdsfiyfanIR  337 (1189)
T KOG2041|consen  267 NHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK--------VPGSCITGLSWEGTGLRIAIAVDSFIYFANIR  337 (1189)
T ss_pred             cCCCcEEEEccCcccccCccccceEEEec-cchhheEEEe--------cCCceeeeeEEcCCceEEEEEecceEEEEeec
Confidence            99999999886542         344443 3355555554        45567888887766644443211         


Q ss_pred             ----------------------cCeEEEEECCCCcee-eeee------------------------------cCCCeEEE
Q 003579          495 ----------------------HGDIKVWDFKGRDLK-SRWE------------------------------VGCSLVKI  521 (809)
Q Consensus       495 ----------------------dg~i~iwd~~~~~~~-~~~~------------------------------~~~~i~~~  521 (809)
                                            .-.|.+||..+.+.. +...                              ..+.+..+
T Consensus       338 P~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l  417 (1189)
T KOG2041|consen  338 PEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFL  417 (1189)
T ss_pred             ccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEE
Confidence                                  113667777654211 0000                              00111111


Q ss_pred             E--------------------EeeCCCEEEEEeCCCeEEEEEcCCCeE--------------------------------
Q 003579          522 V--------------------YHRVNGLLATVADDLVIRLFDVVALRM--------------------------------  549 (809)
Q Consensus       522 ~--------------------~s~~~~~la~~~~d~~I~v~d~~~~~~--------------------------------  549 (809)
                      .                    ..-++..++.++.+ .+.+|.....+.                                
T Consensus       418 ~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys  496 (1189)
T KOG2041|consen  418 QLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYS  496 (1189)
T ss_pred             eeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeecc
Confidence            1                    11124455555544 567776432211                                


Q ss_pred             EEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       550 ~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      ..++.|..++|.+++.|  .++|+.+-..|.|.-|.++++-+...+.....+.+++.+-+...+|....-| .+-+.++.
T Consensus       497 ~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~g-v~tf~dLd  573 (1189)
T KOG2041|consen  497 TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVG-VVTFQDLD  573 (1189)
T ss_pred             ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhc-eeeeeecc
Confidence            12345667788888886  4588899999999999999999988888887899999988888888776666 36666665


Q ss_pred             cccCC
Q 003579          630 CMFSG  634 (809)
Q Consensus       630 ~~~~~  634 (809)
                      ..|..
T Consensus       574 ~d~~g  578 (1189)
T KOG2041|consen  574 YDFDG  578 (1189)
T ss_pred             cccCc
Confidence            54443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.43  E-value=7.4e-08  Score=112.35  Aligned_cols=479  Identities=11%  Similarity=0.090  Sum_probs=273.1

Q ss_pred             eEEEE-cCCeEEEEEEcCCeEEEE----EcCccEEEEecCCCCCCcEEEEEeCCeEEEE--ECCe-EEEEEC--------
Q 003579           19 FSVQR-LGTENFVTVSVGKAFHIY----NCAKLNLVLVGPQLPKKIRALASYRDYTFAA--YGNH-IAVVKR--------   82 (809)
Q Consensus        19 ~~~~~-~~~~~~i~~~~~~~i~iw----d~~~~~~~~~~~~~~~~I~~la~~~~~~~~a--~g~~-i~vw~~--------   82 (809)
                      .++.+ .+.+.++++..+|.|.++    |......-.++ .....|.|+++|||...+|  +|.. +.+..+        
T Consensus        79 vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~  157 (928)
T PF04762_consen   79 VSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG-SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEV  157 (928)
T ss_pred             EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE-EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEe
Confidence            34444 456678888888999898    77766665555 3588999999999965554  4543 333210        


Q ss_pred             -----------------CeeEEEEcc------------------------ccccEEEEEE--eCCEEEEEeC---C---C
Q 003579           83 -----------------AHQVATWSR------------------------HSAKVNLLLL--FGEHILSIDI---D---G  113 (809)
Q Consensus        83 -----------------~~~~~~~~~------------------------h~~~V~~l~~--~g~~l~s~~~---d---g  113 (809)
                                       |++.-+++|                        +...-..|+|  ||.++|+.+.   .   .
T Consensus       158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R  237 (928)
T PF04762_consen  158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRR  237 (928)
T ss_pred             ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence                             111111221                        1223345666  7999988764   3   3


Q ss_pred             cEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeC---CCeEEEEeCCCCceEEEEc----CCCCCEEE
Q 003579          114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ---EGSLQLWNISTKKKLYEFK----GWGSSISS  186 (809)
Q Consensus       114 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~----~~~~~I~~  186 (809)
                      .++||+.+ +.+    ..+-+.-.+.....+|-|.|  +.|++...   ...|.+|. ++|-.-..|.    .....|..
T Consensus       238 ~iRVy~Re-G~L----~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  238 VIRVYSRE-GEL----QSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             EEEEECCC-ceE----EeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence            59999987 333    22222233445567899999  77887654   34567776 4554444443    34678999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEeeCCeE--EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeee
Q 003579          187 CVSSPALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (809)
Q Consensus       187 l~~sp~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~  264 (809)
                      ++|++++..||+-..|. |.+|-..+-.-  .+.+.......+..+.|+|.....|...+.+|.+..+++.-........
T Consensus       310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~  388 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS  388 (928)
T ss_pred             EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence            99999999999988765 99999887652  2333332234566699999877678888877888777653211111100


Q ss_pred             cccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579          265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       265 ~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  343 (809)
                                  .|+.. .+++. ....+++-.+....-.|..-...-....+|.+++|++++..+++-..||.+.+|..
T Consensus       389 ------------~~~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  389 ------------SPNDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             ------------CccCceEEEEE-eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence                        11111 12222 12345555555443322222222244678999999998888999999999999986


Q ss_pred             eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (809)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  423 (809)
                      ........ .........                  .                          ..     ..........
T Consensus       456 ~~~~~~~~-~~~~~~~~~------------------~--------------------------~~-----~~~~~~~~~~  485 (928)
T PF04762_consen  456 DLKNMWSV-KPPKLLSSI------------------S--------------------------LD-----SMDISDSELP  485 (928)
T ss_pred             cCCCcccc-cCcchhhhc------------------c--------------------------cc-----cccccccccc
Confidence            54322110 000000000                  0                          00     0000000111


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                      ...+..++|..+..++++...+   +.+.+++............     ...-.+.+..+...+....++.-..+|.+..
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~  560 (928)
T PF04762_consen  486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVES-----STEVDGVVLIISSSPDSGSLYIQTNDGKVFQ  560 (928)
T ss_pred             cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEE-----EeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence            2567778888877777766654   6777787743332111110     0123345555555555554666677888886


Q ss_pred             EECCCCcee-eeeecCCCeEEEEEeeCCC--EEEEE-eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe
Q 003579          501 WDFKGRDLK-SRWEVGCSLVKIVYHRVNG--LLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       501 wd~~~~~~~-~~~~~~~~i~~~~~s~~~~--~la~~-~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s  576 (809)
                      .+....... ..+....+-..++...+..  .++.| +..|.+++    .++.+.      ..+++++++  +.+|+...
T Consensus       561 ~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------~~~tSF~v~--~~~Ll~TT  628 (928)
T PF04762_consen  561 LSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------SNCTSFAVT--DSFLLFTT  628 (928)
T ss_pred             eecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe------cCCceEEEE--cCEEEEEe
Confidence            665543222 2233333333344333333  23444 44455543    223222      567888875  44788777


Q ss_pred             CCCeEEEEEcC
Q 003579          577 MDGSLRIWDVI  587 (809)
Q Consensus       577 ~D~~I~vwd~~  587 (809)
                      ....+++.++.
T Consensus       629 ~~h~l~fv~L~  639 (928)
T PF04762_consen  629 TQHTLKFVHLN  639 (928)
T ss_pred             cCceEEEEECc
Confidence            78889999988

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=2.6e-10  Score=115.97  Aligned_cols=337  Identities=13%  Similarity=0.163  Sum_probs=218.1

Q ss_pred             EEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEE
Q 003579          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM  284 (809)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  284 (809)
                      ...||.........-... .=.=+-+.|||.|. +|++--..| |.+|--++-..++.+.  |. .|.-+.|||+.++|+
T Consensus       192 svfwN~~~n~p~~ie~Re-nWTetyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLV  265 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERE-NWTETYVRWSPKGT-YLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLV  265 (698)
T ss_pred             EEEccccCCchhhhhhhh-cceeeeEEecCCce-EEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCccceEE
Confidence            566776544322211111 22457899999999 888876554 8899876666666654  65 589999999999999


Q ss_pred             EEcC-----------CCcEEEEEeeCCCCCceeEEeccC---CCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccce
Q 003579          285 SASA-----------DNSIKMWIFDTTDGDPRLLRFRSG---HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (809)
Q Consensus       285 s~s~-----------d~~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  350 (809)
                      |-+.           -..+.|||+.++.    +.+.+..   ....-.-..|+.|+++++--..+ +|.+|+..+-..  
T Consensus       266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~----lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~l--  338 (698)
T KOG2314|consen  266 TYSPEPIIVEEDDNEGQQLIIWDIATGL----LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFML--  338 (698)
T ss_pred             EecCCccccCcccCCCceEEEEEccccc----hhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceee--
Confidence            9653           2579999998773    3333322   22222356899999999977765 588887543111  


Q ss_pred             ecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEE
Q 003579          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (809)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v  430 (809)
                                                                            .+...            -....|...
T Consensus       339 ------------------------------------------------------ld~Ks------------lki~gIr~F  352 (698)
T KOG2314|consen  339 ------------------------------------------------------LDKKS------------LKISGIRDF  352 (698)
T ss_pred             ------------------------------------------------------ecccc------------cCCccccCc
Confidence                                                                  00000            112567777


Q ss_pred             EEcCCCCEEEEEeCC-----CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe----------Cc
Q 003579          431 TISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG----------YH  495 (809)
Q Consensus       431 ~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d  495 (809)
                      .|+|.++.|+.=+..     ..+.+..+.+++.++.-.        -|+-.=..+.|-.+|.+|+.--          .-
T Consensus       353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n--------lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f  424 (698)
T KOG2314|consen  353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN--------LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF  424 (698)
T ss_pred             ccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------ceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence            888887777654322     245566666665555432        2333333455666677665421          11


Q ss_pred             CeEEEEECCCC-ceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCC----CeEEEEEecCCCCeeeEEECC
Q 003579          496 GDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVA----LRMVRKFEGHTDRITDFCFSE  567 (809)
Q Consensus       496 g~i~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~----~~~~~~~~~h~~~I~~l~fsp  567 (809)
                      ..+.|+.+... -++...+....+...+|-|.|+.+++-+.+   .++.+|.+++    .+++..+..  ...+.+.|+|
T Consensus       425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP  502 (698)
T KOG2314|consen  425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP  502 (698)
T ss_pred             eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC
Confidence            23556666543 345666777899999999999988876543   5788888773    234444443  4567899999


Q ss_pred             CCCEEEEEe---CCCeEEEEEcCCccEEEE-eeeCcceEEEEEcCCCCeEEEEEeCC-----CeEEEeecCc
Q 003579          568 DGKWLLSSG---MDGSLRIWDVILARQIDA-IHVDVSITALSLSPNMDVLATAHVDQ-----NGVYLWVNRC  630 (809)
Q Consensus       568 dg~~l~s~s---~D~~I~vwd~~~~~~i~~-~~~~~~v~~l~~spdg~~lat~~~d~-----~~i~lW~~~~  630 (809)
                      .|++++.+.   ..|.+..+|..-..+... ...|...+.+.|.|.|+|++|++.-.     ++-+||+.+.
T Consensus       503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            999998764   578899999885433332 23355689999999999999987632     3688888653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2.2e-09  Score=104.81  Aligned_cols=302  Identities=13%  Similarity=0.156  Sum_probs=202.5

Q ss_pred             CCcEEEEECCCc--eeeeeeecccccceEEEEEecCCCEEEEEcC---CCcEEEEEeeCCCCCceeEEeccCCCCCCeeE
Q 003579          246 SGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (809)
Q Consensus       246 dg~I~iwdl~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (809)
                      +.-|.+|++.+.  ++.......+.+.++-|+|+|+++.|.++..   +|.|-.|.++..++....+........+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            567999998743  3222222357788999999999999988755   58899999998777666665555556677999


Q ss_pred             EEecCCCEEEEEEC-CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579          321 RFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (809)
Q Consensus       321 ~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (809)
                      +.+++|++++++.. -|.|.++-+..........+.                                      ..|.+.
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~--------------------------------------~~h~g~  136 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV--------------------------------------VKHTGS  136 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceee--------------------------------------eecCCC
Confidence            99999999998864 578888887664433322110                                      000000


Q ss_pred             ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeeeeeCcccccccCccccEE
Q 003579          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (809)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (809)
                                   +    ...+.....+....++|+++++++..-. -.|.+|++..|.........     ......-+
T Consensus       137 -------------~----p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-----v~~G~GPR  194 (346)
T COG2706         137 -------------G----PHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-----VKPGAGPR  194 (346)
T ss_pred             -------------C----CCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-----cCCCCCcc
Confidence                         0    0011122447888999999999887654 58999999987765433211     13345678


Q ss_pred             EEEEcCCCCEEEEEe-CcCeEEEEECCCC-ceeeee----------ecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcC
Q 003579          479 GVACDSTNTLMISAG-YHGDIKVWDFKGR-DLKSRW----------EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV  545 (809)
Q Consensus       479 ~l~~~~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~  545 (809)
                      .|+|+|++++..... .+++|.+|.++.. ..+..+          ........+.+++||++|.++.. ...|.+|.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            999999999887665 6899999998873 222222          22366778899999999998765 3477777665


Q ss_pred             C--CeE--EEEEecCCCCeeeEEECCCCCEEEEEeCC-CeEEEEEcC--CccEEEEeee--CcceEEEEEc
Q 003579          546 A--LRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI--LARQIDAIHV--DVSITALSLS  607 (809)
Q Consensus       546 ~--~~~--~~~~~~h~~~I~~l~fspdg~~l~s~s~D-~~I~vwd~~--~~~~i~~~~~--~~~v~~l~~s  607 (809)
                      .  +++  +.....+...-.++.|+|+|++|+++..| ..|.+|.+.  +|++-.....  -....||.|.
T Consensus       275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            3  332  22233344557899999999999999865 468888654  5665444331  1226666664

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=5.1e-11  Score=122.76  Aligned_cols=197  Identities=17%  Similarity=0.258  Sum_probs=153.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEE-------------------EEeCCCCCCEEEEEeCCCeE
Q 003579          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-------------------IMHPDTYLNKVIVGSQEGSL  163 (809)
Q Consensus       103 g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~p~~~~~~l~~~~~dg~i  163 (809)
                      +.++|..+.||.+++|+...++.+.............+...                   ..+.++  ..++.|...|.|
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t--~~lvlgt~~g~v   82 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT--SMLVLGTPQGSV   82 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc--eEEEeecCCccE
Confidence            56788888889999999888776322111111111111110                   112233  468889999999


Q ss_pred             EEEeCCCCceEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579          164 QLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (809)
Q Consensus       164 ~lwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la  241 (809)
                      .+|++..|+..+.+.  .|.+.|.++.++.+...+.+++.|+.+..|+...++.++.+... +..+.+++.+|||. +|+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D~~-~l~  160 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPDGK-ILL  160 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCCCC-EEE
Confidence            999999999998886  68999999999999999999999999999999999999999887 77899999999998 888


Q ss_pred             EEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC-----CCEEE-EEcCCCcEEEEEeeCCCCCcee
Q 003579          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-----EPVLM-SASADNSIKMWIFDTTDGDPRL  306 (809)
Q Consensus       242 sg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~-s~s~d~~i~vw~~~~~~~~~~~  306 (809)
                      +++  +.|.+||+++++.+..+. +|.++|++++|..+     |.+++ +...+.-+.+|-.+........
T Consensus       161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~  228 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSL  228 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchh
Confidence            876  689999999999999999 99999999999887     55444 4555777889988765443333

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.35  E-value=1.1e-09  Score=117.84  Aligned_cols=300  Identities=12%  Similarity=0.094  Sum_probs=186.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~  231 (809)
                      +++++++.+|.|..+|..+|+.+..+...........  .++..+++++.+|.+..+|..+|+.+.+....  +.+.+..
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p  141 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPP  141 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCC
Confidence            6799999999999999999999988765433222222  24678889999999999999999988776643  3333222


Q ss_pred             EecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccce-----EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCcee
Q 003579          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI-----ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL  306 (809)
Q Consensus       232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~  306 (809)
                      ...++  .++.++.+|.|..||.++|+.+.... .....+     .+.... + ..++.+..++.+..+|...+...++.
T Consensus       142 ~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       142 LVANG--LVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             EEECC--EEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence            22233  46667789999999999998877765 211111     111121 2 36777777888877766544321111


Q ss_pred             EEe-ccCCCC--CCeeEEEec--CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEee
Q 003579          307 LRF-RSGHSA--PPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (809)
Q Consensus       307 ~~~-~~~h~~--~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (809)
                      ... ..+...  ....+.-.|  .+..++.++.+|.+..+|..+++..                                
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~--------------------------------  264 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL--------------------------------  264 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE--------------------------------
Confidence            000 000000  000010111  3457778888899999987655322                                


Q ss_pred             ccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 003579          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (809)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (809)
                                             |....               .....  ....++.+++++.+|.++.+|..+|+.+..
T Consensus       265 -----------------------W~~~~---------------~~~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~  304 (377)
T TIGR03300       265 -----------------------WKRDA---------------SSYQG--PAVDDNRLYVTDADGVVVALDRRSGSELWK  304 (377)
T ss_pred             -----------------------Eeecc---------------CCccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence                                   22110               00011  112467888889999999999999987765


Q ss_pred             eeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCC-CeEEEEEeeCCCEEEEEeCCCeEE
Q 003579          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIR  540 (809)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~~~~s~~~~~la~~~~d~~I~  540 (809)
                      ...       ..........+  .+..+++++.+|.|.++|..+++.+..+..+. .+..--... ++.|++++.||.|+
T Consensus       305 ~~~-------~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~  374 (377)
T TIGR03300       305 NDE-------LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLY  374 (377)
T ss_pred             ccc-------ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEE
Confidence            421       11111222222  35688889999999999999999999888654 333222222 34578888999887


Q ss_pred             EE
Q 003579          541 LF  542 (809)
Q Consensus       541 v~  542 (809)
                      .|
T Consensus       375 ~~  376 (377)
T TIGR03300       375 AF  376 (377)
T ss_pred             Ee
Confidence            65

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.35  E-value=1.9e-10  Score=125.82  Aligned_cols=186  Identities=15%  Similarity=0.062  Sum_probs=137.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE-EeCcC--eE
Q 003579          425 TAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS-AGYHG--DI  498 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg--~i  498 (809)
                      ..+.+.+|+|+|++++.....   ..|++|++.++......         .+.+.+.+++|+|+++.|+. .+.++  .|
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------cCCCCccceEECCCCCEEEEEECCCCCccE
Confidence            467888999999999987654   47999999988654322         34456677899999987764 44444  58


Q ss_pred             EEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC-C--eEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEE
Q 003579          499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  575 (809)
Q Consensus       499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-~--~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~  575 (809)
                      ++||+.+++...............|+|+++.|+..+.. +  .|+++|+.+++.. .+..+...+....|+|||++|+.+
T Consensus       261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEE
Confidence            89999887665444444445577899999988877653 2  6888898877643 444456677889999999999988


Q ss_pred             eCCC---eEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCC
Q 003579          576 GMDG---SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN  621 (809)
Q Consensus       576 s~D~---~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~  621 (809)
                      +.++   .|.+||+.++... .+..........|+|||++|+.+..++.
T Consensus       340 ~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       340 HREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             EccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCC
Confidence            8776   7999999886543 3332333556789999999999888763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=1.2e-10  Score=111.46  Aligned_cols=274  Identities=16%  Similarity=0.231  Sum_probs=180.9

Q ss_pred             cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC-CCceeEEeccCCC------------CCCeeEEEecCC--CEEEE
Q 003579          267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYANG--RHILS  331 (809)
Q Consensus       267 h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~~--~~l~s  331 (809)
                      ...-|.++.|...|.+|++|..+|.|.++.-+... +.......+..|.            ..|..++|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            44568999999999999999999999998543332 2333444444453            468889999854  56778


Q ss_pred             EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (809)
Q Consensus       332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (809)
                      .+.|.++++|.+.......+-..                  ++.                                    
T Consensus       104 stNdktiKlWKi~er~~k~~~~~------------------~~~------------------------------------  129 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYN------------------LPE------------------------------------  129 (433)
T ss_pred             ecCCcceeeeeeecccccccccc------------------ccc------------------------------------
Confidence            88999999999865433221000                  000                                    


Q ss_pred             ecceeeecCCCCCCCeEEE---EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579          412 LGEHILRPCPENPTAVKAC---TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (809)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~v---~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  488 (809)
                               ......++++   .+.++...+..               .+++.+.       .+|...|.++.++.|+..
T Consensus       130 ---------~~~~~~~~~lr~p~~~~~~~~vea---------------~prRv~a-------NaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen  130 ---------EGPPGTITSLRLPVEGRHDLEVEA---------------SPRRVYA-------NAHTYHINSISVNSDKET  178 (433)
T ss_pred             ---------cCCCCccceeeceeeccccceeee---------------eeeeecc-------ccceeEeeeeeecCccce
Confidence                     0000111111   11111111111               1222332       389999999999999998


Q ss_pred             EEEEeCcCeEEEEECCCCc-eeeeee--------cCCCeEEEEEeeC-CCEEEEEeCCCeEEEEEcCCCeEE----EE--
Q 003579          489 MISAGYHGDIKVWDFKGRD-LKSRWE--------VGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMV----RK--  552 (809)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~-~~~~~~--------~~~~i~~~~~s~~-~~~la~~~~d~~I~v~d~~~~~~~----~~--  552 (809)
                      ++++. |=.|.+|++.-.. ......        ...-|++..|||. ..+++..+..|+|++-|++...+-    ..  
T Consensus       179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence            88764 5789999986322 211111        1256888999995 567888889999999999853221    11  


Q ss_pred             ----------EecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc-CCccEEEEeeeCcc----------------eEEEE
Q 003579          553 ----------FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV-ILARQIDAIHVDVS----------------ITALS  605 (809)
Q Consensus       553 ----------~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~-~~~~~i~~~~~~~~----------------v~~l~  605 (809)
                                |.+--..|.++.||++|+|+++-+. -+|++||+ ...+++..+..|..                -..++
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~  336 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS  336 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence                      1222346899999999999998654 57999999 45677777765431                35689


Q ss_pred             EcCCCCeEEEEEeCCCeEEEeec
Q 003579          606 LSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       606 ~spdg~~lat~~~d~~~i~lW~~  628 (809)
                      ||.++.+++||+-... ++++++
T Consensus       337 ~sg~~~~v~TGsy~n~-frvf~~  358 (433)
T KOG1354|consen  337 WSGNDSYVMTGSYNNV-FRVFNL  358 (433)
T ss_pred             EcCCcceEecccccce-EEEecC
Confidence            9999999999999884 888884

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=2.6e-10  Score=124.68  Aligned_cols=176  Identities=16%  Similarity=0.143  Sum_probs=121.0

Q ss_pred             eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (809)
Q Consensus       162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~  238 (809)
                      .|.++|... ...+.+..+...+.+.+|+|+|++|+.+...   ..|++||+.+++...... . .+.+.+++|+|||+.
T Consensus       171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~-~~~~~~~~~spDg~~  247 (417)
T TIGR02800       171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-F-PGMNGAPAFSPDGSK  247 (417)
T ss_pred             eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-C-CCCccceEECCCCCE
Confidence            688888754 4445555667789999999999999987654   479999998876543322 2 456778999999985


Q ss_pred             EEEEEcCCC--cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579          239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (809)
Q Consensus       239 ~lasg~~dg--~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (809)
                      ++++.+.++  .|.+||+.++......  .+........|+|+++.|+.++. ++...+|.++...+..+.   +..+..
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~---l~~~~~  322 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR---LTFRGG  322 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---eecCCC
Confidence            555555544  5999999887654333  34455567899999998776554 455455555544433222   223445


Q ss_pred             CCeeEEEecCCCEEEEEECCC---CEEEEEeee
Q 003579          316 PPLCIRFYANGRHILSAGQDR---AFRLFSVIQ  345 (809)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg---~i~~wd~~~  345 (809)
                      ......|+|+|++++.++.++   .|.+|++.+
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence            667889999999999888765   566666543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=3.6e-10  Score=122.91  Aligned_cols=172  Identities=16%  Similarity=0.176  Sum_probs=114.4

Q ss_pred             eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (809)
Q Consensus       162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~  238 (809)
                      .|.++|...... +.+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +... .+.....+|+|||+.
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-PGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-CCCcCCeeECCCCCE
Confidence            677778654433 4455567789999999999999876543   368889998876533 2221 344567899999995


Q ss_pred             EEEEEcCCCc--EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579          239 LLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (809)
Q Consensus       239 ~lasg~~dg~--I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (809)
                      ++++.+.+|.  |.++|+.+++.... . .+........|+||++.|+..+ .++...+|.++..++..+.+. ..++  
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~l-t-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~--  350 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRI-T-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGE--  350 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEEC-c-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCC--
Confidence            5556666664  88889988765443 3 3555667889999999776654 456677777776554433332 2222  


Q ss_pred             CCeeEEEecCCCEEEEEEC-CCCEEEE
Q 003579          316 PPLCIRFYANGRHILSAGQ-DRAFRLF  341 (809)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~-dg~i~~w  341 (809)
                      ......|+|||++|+..+. ++...+|
T Consensus       351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~  377 (448)
T PRK04792        351 QNLGGSITPDGRSMIMVNRTNGKFNIA  377 (448)
T ss_pred             CCcCeeECCCCCEEEEEEecCCceEEE
Confidence            2345689999999887655 3434443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=7.2e-10  Score=119.56  Aligned_cols=133  Identities=9%  Similarity=-0.006  Sum_probs=91.1

Q ss_pred             EEEEEEcCCCCEEEEEe-CcCeEEEE--ECCC-Cceeeeeec-CCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCe
Q 003579          477 VVGVACDSTNTLMISAG-YHGDIKVW--DFKG-RDLKSRWEV-GCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALR  548 (809)
Q Consensus       477 v~~l~~~~~~~~l~s~~-~dg~i~iw--d~~~-~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~  548 (809)
                      ....+|+|||+.|+..+ .+|...+|  ++.. +.....+.. ...+....|+|||+.|+....+   ..|++||+.+++
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            34568899988777655 45654444  4432 222233322 3466788999999999887653   479999999887


Q ss_pred             EEEEEecCCCCeeeEEECCCCCEEEEEeC---CCeEEEEEcCCccEEEEeeeCcceEEEEEcCCC
Q 003579          549 MVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNM  610 (809)
Q Consensus       549 ~~~~~~~h~~~I~~l~fspdg~~l~s~s~---D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg  610 (809)
                      ... +......+....|+|||++|+..+.   ...|.+||+.+++..........+...+|+|-.
T Consensus       363 ~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        363 DYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             eEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            643 4333446778999999999885443   357899999988776655555557788888854

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.32  E-value=2.5e-10  Score=117.70  Aligned_cols=190  Identities=14%  Similarity=0.271  Sum_probs=158.0

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEE--------------------cCCCCEEEEEe
Q 003579          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--------------------DSTNTLMISAG  493 (809)
Q Consensus       434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------------------~~~~~~l~s~~  493 (809)
                      |-+.+++..+.||.+++|+...++....|.+...     -.+..++..|                    +.+...++-|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-----~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-----LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchh-----ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            4567899999999999999999999988864221     1222233332                    11234677788


Q ss_pred             CcCeEEEEECCCCceeeeeec---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCC
Q 003579          494 YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  570 (809)
Q Consensus       494 ~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~  570 (809)
                      ..|.|.+|+...++....+..   .+++.++.++.+-..+.+++.|+.+..|+...++.++.+++....+.+++.+|||+
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            899999999999999988863   38899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCC-----CCeEEEEEeCCCeEEEeecCc
Q 003579          571 WLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-----MDVLATAHVDQNGVYLWVNRC  630 (809)
Q Consensus       571 ~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spd-----g~~lat~~~d~~~i~lW~~~~  630 (809)
                      .|++|+  +.|++||+.+++.+..|.+|.. |.+++|-.+     |.++.++..-..++.+|-...
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999997  7899999999999999998865 999999877     778777766555799997754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.32  E-value=3.3e-09  Score=113.97  Aligned_cols=299  Identities=15%  Similarity=0.185  Sum_probs=187.3

Q ss_pred             EEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc
Q 003579           99 LLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK  178 (809)
Q Consensus        99 l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~  178 (809)
                      ....++.++.++.+|.|..+|..+++.    +-+...........+.  ++  +.+++++.+|.+..+|..+|+.+....
T Consensus        61 p~v~~~~v~v~~~~g~v~a~d~~tG~~----~W~~~~~~~~~~~p~v--~~--~~v~v~~~~g~l~ald~~tG~~~W~~~  132 (377)
T TIGR03300        61 PAVAGGKVYAADADGTVVALDAETGKR----LWRVDLDERLSGGVGA--DG--GLVFVGTEKGEVIALDAEDGKELWRAK  132 (377)
T ss_pred             eEEECCEEEEECCCCeEEEEEccCCcE----eeeecCCCCcccceEE--cC--CEEEEEcCCCEEEEEECCCCcEeeeec
Confidence            345688999999899999999998887    3333333332222222  33  679999999999999999999998776


Q ss_pred             CCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcE-----EEEEEecCCCCEEEEEcCCCcEEEE
Q 003579          179 GWGSSISS-CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV-----TALAFSSDGQPLLASGASSGVISIW  252 (809)
Q Consensus       179 ~~~~~I~~-l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V-----~~l~fs~dg~~~lasg~~dg~I~iw  252 (809)
                      ... .+.+ ...  .++.+++++.+|.+..||.++|+.+-++.... ..+     .+.... ++  .++.+..+|.+..+
T Consensus       133 ~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~-~~--~v~~~~~~g~v~al  205 (377)
T TIGR03300       133 LSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVT-PALTLRGSASPVIA-DG--GVLVGFAGGKLVAL  205 (377)
T ss_pred             cCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEE-CC--EEEEECCCCEEEEE
Confidence            432 2221 111  34578888889999999999999887776531 111     111222 33  56778888999999


Q ss_pred             ECCCceeeeeeeccccc---c------e-EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEE
Q 003579          253 NLEKRRLQSVIREAHDN---A------I-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (809)
Q Consensus       253 dl~~~~~~~~~~~~h~~---~------V-~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (809)
                      |+++|+.+.........   .      + ....+  .+..++.++.+|.+..||..+..    .+-... .. ...... 
T Consensus       206 d~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~----~~W~~~-~~-~~~~p~-  276 (377)
T TIGR03300       206 DLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR----VLWKRD-AS-SYQGPA-  276 (377)
T ss_pred             EccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc----EEEeec-cC-CccCce-
Confidence            99999876654311110   0      1 11111  24477778889999999876542    221111 11 111112 


Q ss_pred             ecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceE
Q 003579          323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (809)
Q Consensus       323 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (809)
                       ..+..++.++.||.+..+|..+++...+.                                                  
T Consensus       277 -~~~~~vyv~~~~G~l~~~d~~tG~~~W~~--------------------------------------------------  305 (377)
T TIGR03300       277 -VDDNRLYVTDADGVVVALDRRSGSELWKN--------------------------------------------------  305 (377)
T ss_pred             -EeCCEEEEECCCCeEEEEECCCCcEEEcc--------------------------------------------------
Confidence             24567888889999999998665432211                                                  


Q ss_pred             EEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEE-EEE
Q 003579          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVA  481 (809)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~  481 (809)
                           ...          ..  ....+..+  .++.+++++.+|.++++|..+|+.+..+.        .+...+. ..+
T Consensus       306 -----~~~----------~~--~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~--------~~~~~~~~sp~  358 (377)
T TIGR03300       306 -----DEL----------KY--RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK--------TDGSGIASPPV  358 (377)
T ss_pred             -----ccc----------cC--CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE--------cCCCccccCCE
Confidence                 000          00  01111111  36789999999999999999999988775        3332222 222


Q ss_pred             EcCCCCEEEEEeCcCeEEEE
Q 003579          482 CDSTNTLMISAGYHGDIKVW  501 (809)
Q Consensus       482 ~~~~~~~l~s~~~dg~i~iw  501 (809)
                      +. + ..|+.++.||.|..+
T Consensus       359 ~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       359 VV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EE-C-CEEEEEeCCceEEEe
Confidence            32 3 358888899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.2e-09  Score=119.64  Aligned_cols=171  Identities=15%  Similarity=0.021  Sum_probs=113.3

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cC--eEE
Q 003579          426 AVKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIK  499 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g-~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~i~  499 (809)
                      ......|+|+|+.++.. ..+|  .|+++|+.++.... +.        .+........|+|+++.++..+. +|  .|.
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy  314 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT--------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIY  314 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc--------cCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            34467899999988754 3444  68888998876543 21        34445667889999998776653 33  577


Q ss_pred             EEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCC---eEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe
Q 003579          500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s  576 (809)
                      ++++.+++...............|+|+|+.++....++   .|.++|+.+++.. .+. +........|+|||++|+.++
T Consensus       315 ~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        315 KVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             EEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEE
Confidence            78888777544332223345678999999998876532   5889999887643 332 222334568999999998776


Q ss_pred             CC---CeEEEEEcCCccEEEEeeeC-cceEEEEEcC
Q 003579          577 MD---GSLRIWDVILARQIDAIHVD-VSITALSLSP  608 (809)
Q Consensus       577 ~D---~~I~vwd~~~~~~i~~~~~~-~~v~~l~~sp  608 (809)
                      .+   ..|.++++. |.....+..+ ..+...+|||
T Consensus       393 ~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        393 RQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             ecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence            44   347777775 4444444333 3467777776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=9.8e-10  Score=120.22  Aligned_cols=194  Identities=18%  Similarity=0.041  Sum_probs=133.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEE-EEeCcC--e
Q 003579          424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHG--D  497 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg--~  497 (809)
                      ...+....|+|||+.++..+.+   ..|.+|++.++......         ...+.+...+|+|+|+.++ +...+|  .
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---------~~~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---------NFEGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------CCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence            3568899999999998776543   36899999888654422         2233455789999998877 444455  6


Q ss_pred             EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (809)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s  574 (809)
                      |++||+.+++...............|+|||+.++..+..   ..|+++|+.+++..+.. ..........|+|||++|+.
T Consensus       269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEE
Confidence            888899988765544444556678899999988777642   36888888887654322 22233446789999999987


Q ss_pred             EeCC-C--eEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCe--EEEeec
Q 003579          575 SGMD-G--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG--VYLWVN  628 (809)
Q Consensus       575 ~s~D-~--~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~--i~lW~~  628 (809)
                      .+.+ +  .|.+||+.+++... +..........|+|||++|+.+..+++.  |++++.
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             EEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            7643 3  58899999886533 2222233467899999999888766433  444443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.28  E-value=2.4e-08  Score=100.05  Aligned_cols=290  Identities=16%  Similarity=0.160  Sum_probs=186.7

Q ss_pred             eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCceEEEEcCC
Q 003579          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG-SLQLWNISTKKKLYEFKGW  180 (809)
Q Consensus       102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg-~i~lwd~~~~~~~~~~~~~  180 (809)
                      +|++++.+| -|...|.+...+-.     -.+. +...+.-.-+.-++  +.++.|..|| .+-++|..+++... +...
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~-----iqv~-~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr-~e~~  400 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYS-----IQVG-KKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKR-IEKD  400 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCee-----EEcC-CCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEE-eeCC
Confidence            599999998 56666665544332     1111 12223333344455  6799999999 89999988776554 4455


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC----cEEEEECCC
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG----VISIWNLEK  256 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg----~I~iwdl~~  256 (809)
                      -+.|.++..+|+|++++++.....+.+.|+.+|.....-+. ..+-|+...|+|+++ ++|-+-.+|    .|+++|+.+
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS-~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC
Confidence            78899999999999999999999999999999886554433 368899999999999 888776554    799999999


Q ss_pred             ceeeeeeecccccceEEEEEecCCCEEEEEcC-------CCcEEEEEeeCCCCCceeEEeccCCCCCCeeE---------
Q 003579          257 RRLQSVIREAHDNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI---------  320 (809)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-------d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i---------  320 (809)
                      ++......  ..+.=.+-+|.|++++|.--+.       |..+.=+.+..-. .+-++....+...|....         
T Consensus       479 ~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vs-kPylv~L~~g~~sP~~q~p~~~~~ea~  555 (668)
T COG4946         479 GKIYDVTT--PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVS-KPYLVVLGRGYYSPFNQPPDEANSEAG  555 (668)
T ss_pred             CeEEEecC--CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeec-cceEEEecCCCCChhhcCchhcCcccc
Confidence            88766554  3333456788899997766542       3333323222211 111111111221111100         


Q ss_pred             -----------EEec--CCCE-EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccc
Q 003579          321 -----------RFYA--NGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (809)
Q Consensus       321 -----------~~~~--~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  386 (809)
                                 .-.|  .+.+ -+++-.+|.|.+++..-....                                     
T Consensus       556 e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gef-------------------------------------  598 (668)
T COG4946         556 EVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEF-------------------------------------  598 (668)
T ss_pred             ceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchh-------------------------------------
Confidence                       0011  2222 334445565666665322211                                     


Q ss_pred             cccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003579          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (809)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~  455 (809)
                         .....+....+.+..++++++...+.        ...++++.+|+||..+.+ -.+|.++++++..
T Consensus       599 ---s~yy~gq~~kG~l~~ydletkk~~e~--------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         599 ---SQYYWGQPEKGRLEKYDLETKKVEEY--------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             ---hhhhcCCCccceEEEEecchhhHHHH--------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence               11222344567778888887655332        278899999999999999 8899999999875

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.26  E-value=1.5e-09  Score=102.21  Aligned_cols=271  Identities=14%  Similarity=0.156  Sum_probs=181.7

Q ss_pred             CCeEEEEEeeCCeEEE--EEeccCCCcEEEEEEec---CCCCEEEEEcCCCcEEEEECCCceeeeeeeccc-----ccce
Q 003579          202 DGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAH-----DNAI  271 (809)
Q Consensus       202 dg~i~iwd~~~~~~~~--~~~~~~~~~V~~l~fs~---dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h-----~~~V  271 (809)
                      .|.+.+|++...+.+.  ++.......+..+.|+-   +|...++-+...|.|.++..........++.-.     ....
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            4678899987665433  33322245677777763   444466777788999999876654444444111     1124


Q ss_pred             EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccce
Q 003579          272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSR  350 (809)
Q Consensus       272 ~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~  350 (809)
                      .++.|++.+..++++-.+|.+.+-+....  ..+..+..++|..+.....|+. +.+.+.+||.|+.+..||++.+..  
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--  200 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEM--VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--  200 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEeccee--eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--
Confidence            57889999999999999999885433322  1222347789999999999987 556888999999999999863210  


Q ss_pred             ecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEE
Q 003579          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (809)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v  430 (809)
                                                                                                      
T Consensus       201 --------------------------------------------------------------------------------  200 (339)
T KOG0280|consen  201 --------------------------------------------------------------------------------  200 (339)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC-CCCEEEEEeCcCeEEEEECC-CCce
Q 003579          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFK-GRDL  508 (809)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~-~~~~  508 (809)
                             +           +|.-                ..-|...|.++.-+| ...++++|+.|..|++||.+ -+++
T Consensus       201 -------~-----------i~~n----------------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  201 -------F-----------IWHN----------------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             -------e-----------eeec----------------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence                   0           0000                025777888888775 56799999999999999998 5788


Q ss_pred             eeeeecCCCeEEEEEeeCCC-EEEEEeCCCeEEEEEcCCC--e---EEEEEecCCCCeeeEEECCCCCEEEEEe-CCCeE
Q 003579          509 KSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--R---MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSL  581 (809)
Q Consensus       509 ~~~~~~~~~i~~~~~s~~~~-~la~~~~d~~I~v~d~~~~--~---~~~~~~~h~~~I~~l~fspdg~~l~s~s-~D~~I  581 (809)
                      +..-...+.|+.+..+|.-. .+.+++.-.-.+|.++..+  +   .....+.|.+-+..-.|.....+|+|++ .|+.+
T Consensus       247 l~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~  326 (339)
T KOG0280|consen  247 LFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKI  326 (339)
T ss_pred             cccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccce
Confidence            87777889999999999433 3333333344566666543  2   3445566776666666744445788876 67775


Q ss_pred             E-EEEcCCcc
Q 003579          582 R-IWDVILAR  590 (809)
Q Consensus       582 ~-vwd~~~~~  590 (809)
                      + +|-.-++.
T Consensus       327 ~~~Wl~~t~~  336 (339)
T KOG0280|consen  327 RQLWLHITGE  336 (339)
T ss_pred             eeeeeeccCC
Confidence            5 77655443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=2.1e-09  Score=116.03  Aligned_cols=196  Identities=13%  Similarity=0.036  Sum_probs=130.7

Q ss_pred             CCeEEEEEcCCCCE---EEEEeCCC--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cC--
Q 003579          425 TAVKACTISACGNF---AVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--  496 (809)
Q Consensus       425 ~~v~~v~~s~~g~~---l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--  496 (809)
                      ....+-.|||||+.   +++...+|  .|++.++.+|......         ...+.....+|+|||+.|+..+. +|  
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------~~~g~~~~p~wSPDG~~Laf~s~~~g~~  255 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------ALQGNQLMPTFSPRKKLLAFISDRYGNP  255 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------cCCCCccceEECCCCCEEEEEECCCCCc
Confidence            45567799999974   33555554  6888888887654432         23444567899999988886653 22  


Q ss_pred             --eEEEEECCCC---ceeeeeecC-CCeEEEEEeeCCCEEEEEeC-CCe--EEEEEcCC-CeEEEEEecCCCCeeeEEEC
Q 003579          497 --DIKVWDFKGR---DLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLV--IRLFDVVA-LRMVRKFEGHTDRITDFCFS  566 (809)
Q Consensus       497 --~i~iwd~~~~---~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d~~--I~v~d~~~-~~~~~~~~~h~~~I~~l~fs  566 (809)
                        .+..|++..+   +........ ......+|+|||+.|+..++ ++.  |+++++.. +...+.+..+...+....||
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence              3444776653   333333222 34467899999998887764 554  55555542 23345555556677889999


Q ss_pred             CCCCEEEEEeCC---CeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCC--CeEEEeecC
Q 003579          567 EDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ--NGVYLWVNR  629 (809)
Q Consensus       567 pdg~~l~s~s~D---~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~--~~i~lW~~~  629 (809)
                      |||++|+..+.+   ..|.+||+.+++..........+.+..|+|||++|+....++  ..|++|++.
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            999999876643   469999999987755444434578899999999988665432  247777764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.9e-09  Score=117.28  Aligned_cols=194  Identities=11%  Similarity=0.014  Sum_probs=130.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE-EeCcCe--
Q 003579          424 PTAVKACTISACGNFAVLGTAG-G--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS-AGYHGD--  497 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~-g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg~--  497 (809)
                      ...+.+..|||||+.++..+.+ +  .|+++|+.++......         ...+.....+|+|+|+.|+. .+.+|.  
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt---------~~~g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT---------SFPGINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec---------CCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence            3577889999999998876543 3  6889999887653321         11223346899999997765 455664  


Q ss_pred             EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeC-C--CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-D--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (809)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-d--~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s  574 (809)
                      |+++|+.+++..............+|+|||+.++..+. +  ..|+++|+.+++..+. ..+.......+|+|||++|+.
T Consensus       288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        288 IYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEE
Confidence            88889888876554444455677899999998887664 2  3677788887765432 222223446799999999987


Q ss_pred             EeCC-C--eEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCe--EEEeec
Q 003579          575 SGMD-G--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG--VYLWVN  628 (809)
Q Consensus       575 ~s~D-~--~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~--i~lW~~  628 (809)
                      .+.+ +  .|.++|+.+++... +.......+..|+|||++|+.+..++..  +++++.
T Consensus       367 ~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             EEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            6643 3  46667888876533 2222223356899999999887766533  444443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=1.6e-10  Score=121.12  Aligned_cols=287  Identities=16%  Similarity=0.265  Sum_probs=188.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCC-CEEEEEcCCCcEEEEECCCc-
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR-  257 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~-~~lasg~~dg~I~iwdl~~~-  257 (809)
                      .+++.++..+|.|+-+|.++.-|.+ +.|+.. +.+.+-+.+...-.|-...|++... .+-++......-.+|++... 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            5678889999999999999887754 455543 3444444333334677888887642 24444455566678998643 


Q ss_pred             -eeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECC
Q 003579          258 -RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (809)
Q Consensus       258 -~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d  335 (809)
                       +.+..+..+|...|+.+.|.|..+ .+++++.|-.+..||+....   +.+.....-...-..+.|+-....++..+..
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vlasshg  179 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVLASSHG  179 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchhhhccC
Confidence             444444459999999999999776 88999999999999887654   3343333334445567776633344444445


Q ss_pred             CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecce
Q 003579          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (809)
Q Consensus       336 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  415 (809)
                      +.+++||++.+...                                                                  
T Consensus       180 ~~i~vwd~r~gs~p------------------------------------------------------------------  193 (1081)
T KOG0309|consen  180 NDIFVWDLRKGSTP------------------------------------------------------------------  193 (1081)
T ss_pred             CceEEEeccCCCcc------------------------------------------------------------------
Confidence            55777776543211                                                                  


Q ss_pred             eeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC-CCEEEEEeC
Q 003579          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGY  494 (809)
Q Consensus       416 ~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~  494 (809)
                                                                 +..+        ++|...|.+++|..- ...+.+++.
T Consensus       194 -------------------------------------------l~s~--------K~~vs~vn~~~fnr~~~s~~~s~~~  222 (1081)
T KOG0309|consen  194 -------------------------------------------LCSL--------KGHVSSVNSIDFNRFKYSEIMSSSN  222 (1081)
T ss_pred             -------------------------------------------eEEe--------cccceeeehHHHhhhhhhhhcccCC
Confidence                                                       1111        256667777777542 346788999


Q ss_pred             cCeEEEEECCCC--ceeeeeecCCCeEEEEEeeCCCEEEEEe--CCCeEEEEEcC---------C-CeEEEEEecCCCCe
Q 003579          495 HGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVV---------A-LRMVRKFEGHTDRI  560 (809)
Q Consensus       495 dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~I~v~d~~---------~-~~~~~~~~~h~~~I  560 (809)
                      ||+|++||....  +..++.....++..-++.|-|.-..+--  .+..+.+++.+         + .+.+.+|.||.+.|
T Consensus       223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence            999999998754  3445555668888888888655333221  12244444332         2 36799999999999


Q ss_pred             eeEEECCCC----------CEEEEEeCCCeEEEEEcCC
Q 003579          561 TDFCFSEDG----------KWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       561 ~~l~fspdg----------~~l~s~s~D~~I~vwd~~~  588 (809)
                      ....|-..+          -.|+|-|.|.++|+|-+.+
T Consensus       303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            887774422          1699999999999998754

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=2.8e-11  Score=128.97  Aligned_cols=269  Identities=16%  Similarity=0.195  Sum_probs=192.9

Q ss_pred             eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC--C
Q 003579          260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--A  337 (809)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~  337 (809)
                      ..+++ .|+...++++|+.+.+.|+.|+..|.|+++++.++.    ......+|..+|+.+.-+.+|..+++.+.-.  -
T Consensus      1094 w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1094 WRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             chhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccCch
Confidence            34455 678899999999999999999999999999998873    4556679999999999998998877665433  2


Q ss_pred             EEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceee
Q 003579          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (809)
Q Consensus       338 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (809)
                      ..+|++..-...                                                                .|. 
T Consensus      1169 saLW~~~s~~~~----------------------------------------------------------------~Hs- 1183 (1516)
T KOG1832|consen 1169 SALWDASSTGGP----------------------------------------------------------------RHS- 1183 (1516)
T ss_pred             HHHhccccccCc----------------------------------------------------------------ccc-
Confidence            456765321100                                                                111 


Q ss_pred             ecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCe
Q 003579          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (809)
Q Consensus       418 ~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~  497 (809)
                            -..-.++.|+..-.+-++|+......+||++++....++.....    +....-+...|+|+.++++   .||.
T Consensus      1184 ------f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----~~~y~~n~a~FsP~D~LIl---ndGv 1250 (1516)
T KOG1832|consen 1184 ------FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----TSSYSNNLAHFSPCDTLIL---NDGV 1250 (1516)
T ss_pred             ------ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----hhhhhccccccCCCcceEe---eCce
Confidence                  13445677777777778888888999999999998877542211    2223337788999988776   4553


Q ss_pred             EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe-
Q 003579          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-  576 (809)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s-  576 (809)
                        +||.+..+.++.+..-..-..-.|||.|.-++..+     .|||++|.++++....-.  -..+.|...|..+...- 
T Consensus      1251 --LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~~~ 1321 (1516)
T KOG1832|consen 1251 --LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAMLN 1321 (1516)
T ss_pred             --eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhhhh
Confidence              69999887777775544334457999999888765     489999988776554322  24567777776543221 


Q ss_pred             ----C------------CCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCC
Q 003579          577 ----M------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (809)
Q Consensus       577 ----~------------D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~  620 (809)
                          .            -...|.+|..+...+.++.....+..++-+|...+|+..-..+
T Consensus      1322 ~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~~ 1381 (1516)
T KOG1832|consen 1322 IEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEMED 1381 (1516)
T ss_pred             hhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEeccC
Confidence                0            1245777878888889999888899999999999988775544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=2.1e-10  Score=131.34  Aligned_cols=225  Identities=15%  Similarity=0.264  Sum_probs=171.4

Q ss_pred             CEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEE
Q 003579          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS  273 (809)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~  273 (809)
                      +.......++...-|..+-+....   .++-..|.++.=+|... +.++|+.||.+++|....+..+...+.+-...|+.
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~~---k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMI---KHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred             ccCCcccCCccccceecccceeEe---ecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence            344444445555555544332222   22345788888888877 77899999999999999998888888666789999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE---CCCCEEEEEeeecccce
Q 003579          274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQDQQSR  350 (809)
Q Consensus       274 l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~~  350 (809)
                      +.|+.+|+.+..+..||.+.+|...     ++.......|......++|-.  ..+++++   .++.+.+||......  
T Consensus      2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-- 2327 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-- 2327 (2439)
T ss_pred             hhhcccCCceeeeccCCceeecccC-----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc--
Confidence            9999999999999999999999765     356777778999899999876  4566654   356777887422110  


Q ss_pred             ecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEE
Q 003579          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (809)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v  430 (809)
                                                                                                      
T Consensus      2328 -------------------------------------------------------------------------------- 2327 (2439)
T KOG1064|consen 2328 -------------------------------------------------------------------------------- 2327 (2439)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceee
Q 003579          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (809)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  510 (809)
                            +.++                             ...|.+.++++++.|..+++++||.+|.|++||++..++++
T Consensus      2328 ------~s~v-----------------------------~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2328 ------NSLV-----------------------------HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             ------ccee-----------------------------eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence                  0000                             02788999999999999999999999999999999988888


Q ss_pred             eeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 003579          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG  555 (809)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~  555 (809)
                      +++.        ++ ...++.+|+..|.|+||++.....+..+..
T Consensus      2373 ~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2373 TFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             Hhhh--------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            7765        34 577899999999999999998877777653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=6e-10  Score=127.72  Aligned_cols=180  Identities=16%  Similarity=0.254  Sum_probs=143.1

Q ss_pred             CCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (809)
Q Consensus       159 ~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~  238 (809)
                      .++...-|..+.+...  ++.+-..|.++.-+|...+-++|+.||.+++|....++.+..+.......|+.+.|+.+|. 
T Consensus      2188 ~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn- 2264 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN- 2264 (2439)
T ss_pred             CCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-
Confidence            3444455554433322  2334567888888999899999999999999999999999999876678999999999998 


Q ss_pred             EEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc---CCCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (809)
Q Consensus       239 ~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (809)
                      -...+..||.+.+|... .+.....+ .|........|..  ..+++++   .++.+.+||....... .++.  ..|.+
T Consensus      2265 k~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDG 2337 (2439)
T ss_pred             ceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCC
Confidence            67778889999999987 55555555 7998999999986  5677765   4788999986655432 2333  68999


Q ss_pred             CCeeEEEecCCCEEEEEECCCCEEEEEeeeccc
Q 003579          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (809)
Q Consensus       316 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~  348 (809)
                      .+++++|.|..+.|++||.+|.+++||++..+.
T Consensus      2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             CceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence            999999999999999999999999999876544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.13  E-value=5.6e-09  Score=98.41  Aligned_cols=237  Identities=13%  Similarity=0.109  Sum_probs=160.3

Q ss_pred             EEEEEeCCCcEEEEEcCCCcc--ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce--EEEEcCC
Q 003579          105 HILSIDIDGNMFIWAFKGIEE--NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK--LYEFKGW  180 (809)
Q Consensus       105 ~l~s~~~dg~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~  180 (809)
                      .|+-+..+|.|.++..+..+.  ...++...+.......+.-+++.+  ..++++-.+|.+.+-+.....+  +++.+.|
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~--~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H  164 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG--TKIFVSDSRGSISGVYETEMVLEKVQTWKVH  164 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC--ceEEEEcCCCcEEEEecceeeeeeccccccc
Confidence            455566788899988765443  111222222222223445588888  7899999999999777655544  4488999


Q ss_pred             CCCEEEEEEcC-CCCEEEEEeCCCeEEEEEee-CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC-c
Q 003579          181 GSSISSCVSSP-ALDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-R  257 (809)
Q Consensus       181 ~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~-~  257 (809)
                      ..+...+.|+. +.+++.+|+.|+.+.-||++ .++.+.+-..-|...|.+|.-+|...+++++|+.|-.|++||.++ +
T Consensus       165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence            99999999986 44789999999999999999 444555433344678999999988777999999999999999984 4


Q ss_pred             eeeeeeecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCC-ceeEEeccCCCCCCeeEEEecCCCEEEEEE-
Q 003579          258 RLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAG-  333 (809)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-  333 (809)
                      +.+..-.  -.++|+.+.++|.-.  +|+++- -+-.++-+.+....+ ...+.....|.+-...-.|......|++|+ 
T Consensus       245 kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF  321 (339)
T KOG0280|consen  245 KPLFKAK--VGGGVWRIKHHPEIFHRLLAACM-HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF  321 (339)
T ss_pred             CccccCc--cccceEEEEecchhhhHHHHHHH-hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeec
Confidence            5555443  458999999998533  344433 344666665544332 224455566766555555644445688875 


Q ss_pred             CCCCEE-EEEeeec
Q 003579          334 QDRAFR-LFSVIQD  346 (809)
Q Consensus       334 ~dg~i~-~wd~~~~  346 (809)
                      .|+.++ +|-..++
T Consensus       322 YDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  322 YDKKIRQLWLHITG  335 (339)
T ss_pred             cccceeeeeeeccC
Confidence            466645 7755443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.12  E-value=2.8e-08  Score=92.46  Aligned_cols=272  Identities=11%  Similarity=0.080  Sum_probs=178.2

Q ss_pred             CCCeEEEEeCCCCc--eEEEEcCCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579          159 QEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (809)
Q Consensus       159 ~dg~i~lwd~~~~~--~~~~~~~~~~~I~~l~~sp-----~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~  231 (809)
                      ....+-+|++-+..  .+...       +.+.|.|     .-.+||.|+..|...+|...+.+....+...+...|+-..
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~  122 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK  122 (344)
T ss_pred             ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence            44457777764432  22222       2344544     3458999999999999999977765555443333333322


Q ss_pred             EecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEE-ec
Q 003579          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-FR  310 (809)
Q Consensus       232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~-~~  310 (809)
                      =..|.+.-+..++.|.++++.+++.+......... .-.+.++.++++++++++.+....|..|.++....  .+++ ..
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--y~~~~~~  199 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--YIENIYE  199 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCcccceeecc-ccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--eeeeeEe
Confidence            22233334666788899999988766544333211 12388999999999999999999999998876543  2333 33


Q ss_pred             cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579          311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (809)
Q Consensus       311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  390 (809)
                      ......-.+..|+.....++++.+||++.+||++.........                                     
T Consensus       200 a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~-------------------------------------  242 (344)
T KOG4532|consen  200 APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI-------------------------------------  242 (344)
T ss_pred             cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh-------------------------------------
Confidence            3444556788899988899999999999999998764322110                                     


Q ss_pred             eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeeeeCcccc
Q 003579          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMSER  468 (809)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~  468 (809)
                                                -...+.|.+.++.+.|++-|  .+|+..-.-+.+.+.|++++............
T Consensus       243 --------------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~  296 (344)
T KOG4532|consen  243 --------------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV  296 (344)
T ss_pred             --------------------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence                                      11122467899999999876  46666667789999999998776655432222


Q ss_pred             cccCccc-cEEEEEEcCCCCEEEEEeCcCeEEEEECCC
Q 003579          469 SNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (809)
Q Consensus       469 ~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~  505 (809)
                       ...|.. .|.+-.|+.++..+.+...+ .+.=|++.+
T Consensus       297 -~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  297 -ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             -cccccccccccccccCCCcccccccch-hhheeeccc
Confidence             223443 48888888888766665543 234455443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.12  E-value=7.7e-08  Score=114.49  Aligned_cols=75  Identities=9%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             eEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-------------cCCCCeeeEEECCCCCEEEEEeCCCeEEEE
Q 003579          518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIW  584 (809)
Q Consensus       518 i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-------------~h~~~I~~l~fspdg~~l~s~s~D~~I~vw  584 (809)
                      ...++++++|.++++-..++.|++||..++.......             ++-.....++++++|+.+++-+.++.|++|
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            4688999999988888899999999998876553321             112357789999999999988999999999


Q ss_pred             EcCCccEE
Q 003579          585 DVILARQI  592 (809)
Q Consensus       585 d~~~~~~i  592 (809)
                      |+.+++.+
T Consensus       886 d~~~~~~~  893 (1057)
T PLN02919        886 DLNKGEAA  893 (1057)
T ss_pred             ECCCCccc
Confidence            99998763

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.12  E-value=6.7e-08  Score=104.20  Aligned_cols=304  Identities=13%  Similarity=0.102  Sum_probs=182.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCC--CEE-----EEEEcC--CCCEEEEEeCCCeEEEEEeeCCeEEEEEecc
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS--SIS-----SCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHS  222 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~--~I~-----~l~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~  222 (809)
                      +++++++.+|.+.-+|.++|+.+........  ...     .+.-+|  +++.+++++.+|.+.-+|.++|+.+-+....
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  149 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA  149 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence            6799999999999999999999988753220  000     001111  3567888889999999999999988877653


Q ss_pred             CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeeccccc----ceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSIKMWIFD  298 (809)
Q Consensus       223 ~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~----~V~~l~~~~~~~~l~s~s~d~~i~vw~~~  298 (809)
                        +.+.+--...++  .+++++.+|.|..+|.++|+.+.........    ...+....  +..++.++.++.+...+..
T Consensus       150 --~~~~ssP~v~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        150 --GEALSRPVVSDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             --CceecCCEEECC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEEEEcc
Confidence              233221111244  4667788999999999999988777622110    00111111  2346666778887777655


Q ss_pred             CCCCCceeEEec-cC-CC-CCCeeEEEec--CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhcc
Q 003579          299 TTDGDPRLLRFR-SG-HS-APPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (809)
Q Consensus       299 ~~~~~~~~~~~~-~~-h~-~~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (809)
                      .+...++..... .+ +. .....+..+|  .+..++.++.+|.+..+|..+++..                        
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------------------------  279 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------------------------  279 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------------------------
Confidence            443222211000 00 00 0000111122  2446777778888888887665432                        


Q ss_pred             CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003579          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (809)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~  453 (809)
                                                     |....               .....+  ...+..+++++.+|.+..+|.
T Consensus       280 -------------------------------W~~~~---------------~~~~~~--~~~~~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        280 -------------------------------WKREY---------------GSVNDF--AVDGGRIYLVDQNDRVYALDT  311 (394)
T ss_pred             -------------------------------EeecC---------------CCccCc--EEECCEEEEEcCCCeEEEEEC
Confidence                                           22110               000011  124678888889999999999


Q ss_pred             CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEE-EEEeeCCCEEE
Q 003579          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVK-IVYHRVNGLLA  531 (809)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~-~~~s~~~~~la  531 (809)
                      .+|+.+......      .+ ....+..+  .+.+++.++.||.|...|..+|+.+...+.. ..+.+ ..+  .+..|+
T Consensus       312 ~tG~~~W~~~~~------~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~  380 (394)
T PRK11138        312 RGGVELWSQSDL------LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLL  380 (394)
T ss_pred             CCCcEEEccccc------CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEE
Confidence            999876543210      11 11222222  2456788899999999999999998887654 22322 122  356788


Q ss_pred             EEeCCCeEEEEEc
Q 003579          532 TVADDLVIRLFDV  544 (809)
Q Consensus       532 ~~~~d~~I~v~d~  544 (809)
                      +++.||.++.++.
T Consensus       381 v~t~~G~l~~~~~  393 (394)
T PRK11138        381 IQARDGTVYAITR  393 (394)
T ss_pred             EEeCCceEEEEeC
Confidence            8899999988764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=99.10  E-value=5.2e-05  Score=83.94  Aligned_cols=521  Identities=14%  Similarity=0.078  Sum_probs=281.7

Q ss_pred             CCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEE----Eec--CCCCCCcEEEEEeC-----CeEEEEE-CC----eEE
Q 003579           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLV----LVG--PQLPKKIRALASYR-----DYTFAAY-GN----HIA   78 (809)
Q Consensus        15 ~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~----~~~--~~~~~~I~~la~~~-----~~~~~a~-g~----~i~   78 (809)
                      ..++-++.+.+..++.++|.-+.=++-.+.+..-.    -..  -.--++|..|.+-.     .+.++.| |.    .++
T Consensus       306 ~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLR  385 (1096)
T KOG1897|consen  306 TSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLR  385 (1096)
T ss_pred             cchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEE
Confidence            55667777888889999888443355555432111    111  11234777777543     2555555 32    288


Q ss_pred             EEECCee---EEE--EccccccEEEEE--E---eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC
Q 003579           79 VVKRAHQ---VAT--WSRHSAKVNLLL--L---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD  148 (809)
Q Consensus        79 vw~~~~~---~~~--~~~h~~~V~~l~--~---~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  148 (809)
                      +.+.+-.   .+.  +.| -..+..+.  +   ..++|+.+- -+.-++..+...-.    ......-..-..+.+++.-
T Consensus       386 iiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eTrvl~i~~e~e----e~~~~gf~~~~~Tif~S~i  459 (1096)
T KOG1897|consen  386 IIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISETRVLNISEEVE----ETEDPGFSTDEQTIFCSTI  459 (1096)
T ss_pred             EEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccceEEEEEccceE----EeccccccccCceEEEEcc
Confidence            8876532   222  455 23344444  2   234555443 33334444433211    0111111122234444444


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEE
Q 003579          149 TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT  228 (809)
Q Consensus       149 ~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~  228 (809)
                      .+ +.|+-... ..|++++-.  .....+.. .+.++....+.+...+++++.++.+...++..+.............|.
T Consensus       460 ~g-~~lvQvTs-~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~eva  534 (1096)
T KOG1897|consen  460 NG-NQLVQVTS-NSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVA  534 (1096)
T ss_pred             CC-ceEEEEec-ccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeE
Confidence            43 44554433 358888754  34444443 455666666666667888887788877777766633333333356899


Q ss_pred             EEEEecC--CCC---EEEEEcCCCcEEEE-ECCCceeeeeeeccc---ccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579          229 ALAFSSD--GQP---LLASGASSGVISIW-NLEKRRLQSVIREAH---DNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (809)
Q Consensus       229 ~l~fs~d--g~~---~lasg~~dg~I~iw-dl~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~  299 (809)
                      |+.++|-  ++.   ++++|..+..+.+. -+.+...+.....+-   ...|.-.++-.|..+|.++..||.+..+.++.
T Consensus       535 CLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  535 CLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             EEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence            9999975  333   88888866555443 333333333221111   23455555666688999999999999999998


Q ss_pred             CCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEE
Q 003579          300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  379 (809)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  379 (809)
                      .++...-.+...--..|+.--.|+..++.-+.+..|+-..+|.....-....++....                      
T Consensus       615 ~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev----------------------  672 (1096)
T KOG1897|consen  615 NTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEV----------------------  672 (1096)
T ss_pred             ccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHh----------------------
Confidence            8765444443333456777777877666556666677766766433221111111100                      


Q ss_pred             eeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--
Q 003579          380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI--  457 (809)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~--  457 (809)
                                                                   ..+....-...+..++.+ ..+.+.+.-+..-.  
T Consensus       673 ---------------------------------------------~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl  706 (1096)
T KOG1897|consen  673 ---------------------------------------------NHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKL  706 (1096)
T ss_pred             ---------------------------------------------hhhcccccccCCceEEEe-cCCceEEEEecchhhc
Confidence                                                         000000001112233332 22333333332211  


Q ss_pred             eeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-----------c---CeEEEEECCCCceeeeeecC-----CCe
Q 003579          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----------H---GDIKVWDFKGRDLKSRWEVG-----CSL  518 (809)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----------d---g~i~iwd~~~~~~~~~~~~~-----~~i  518 (809)
                      +.++.         .-......+++.+....+.+.+.           .   ..++++|-++.+.++..+..     ..+
T Consensus       707 ~irtv---------pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si  777 (1096)
T KOG1897|consen  707 HIRTV---------PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSI  777 (1096)
T ss_pred             ceeee---------cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeee
Confidence            11111         11223344444443333332221           1   24778887777776665544     455


Q ss_pred             EEEEEeeC-CCEEEEEeC----------CCeEEEEEcCCCeEEEEEecC--CCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          519 VKIVYHRV-NGLLATVAD----------DLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       519 ~~~~~s~~-~~~la~~~~----------d~~I~v~d~~~~~~~~~~~~h--~~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      .++.|..| +.++++|..          .|.|.||....++.++....+  .+.+.++.-- +|++||.  -...||+|+
T Consensus       778 ~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye  854 (1096)
T KOG1897|consen  778 ISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYE  854 (1096)
T ss_pred             eeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEE
Confidence            66668887 778888753          578888888774433333322  3555555432 5776654  457899999


Q ss_pred             cCCccEEE-EeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          586 VILARQID-AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       586 ~~~~~~i~-~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                      ..+.+.++ .-....++..+...-.|+.++.|..-+ ++.+-.
T Consensus       855 ~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~  896 (1096)
T KOG1897|consen  855 WTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQ  896 (1096)
T ss_pred             ccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEE
Confidence            99885543 334556788888888999999998766 465543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=4.8e-08  Score=104.65  Aligned_cols=190  Identities=11%  Similarity=-0.018  Sum_probs=129.1

Q ss_pred             CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE-eC--cCeE
Q 003579          426 AVKACTISACGNF-AVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GY--HGDI  498 (809)
Q Consensus       426 ~v~~v~~s~~g~~-l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~--dg~i  498 (809)
                      ......|+|||+. ++..+..   ..|+++|+.+++.....         ...+......|+|||+.++.. +.  +..|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence            5678899999985 5544333   57999999888765543         234455677899999876644 33  3568


Q ss_pred             EEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEE
Q 003579          499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  575 (809)
Q Consensus       499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~  575 (809)
                      .++|+.+++...............|+|||+.|+..++.   ..|+++|+.+++..+.... ..  ....|||||++|+..
T Consensus       260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~  336 (419)
T PRK04043        260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYS  336 (419)
T ss_pred             EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEE
Confidence            88898888755433333334566899999988887653   2788899988876444332 11  124899999999876


Q ss_pred             eCC---------CeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          576 GMD---------GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       576 s~D---------~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                      +..         ..|.+.|+.++.... +..........|||||++|+.....+..-.||-+
T Consensus       337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        337 SRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             EcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence            643         368888998886543 3323334468999999999888766544445543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=1.9e-09  Score=109.39  Aligned_cols=287  Identities=17%  Similarity=0.202  Sum_probs=194.0

Q ss_pred             ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC---ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  342 (809)
                      +|...|..+.-..+.+-+++++.|++|++|.+......   ..+..+...|..+|..+.|..+.++++++  ||.+.+||
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWD  810 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWD  810 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeec
Confidence            89999999998889999999999999999998765432   34667788999999999999998888765  78899999


Q ss_pred             eeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC
Q 003579          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (809)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  422 (809)
                      .-.+.....+...                                                               +..+
T Consensus       811 PFigr~Laq~~da---------------------------------------------------------------pk~~  827 (1034)
T KOG4190|consen  811 PFIGRLLAQMEDA---------------------------------------------------------------PKEG  827 (1034)
T ss_pred             ccccchhHhhhcC---------------------------------------------------------------cccC
Confidence            7655433221100                                                               0001


Q ss_pred             CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579          423 NPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (809)
Q Consensus       423 ~~~~v~~v~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw  501 (809)
                      ..+.|.++. +-+...++.| +...+|+++|.+++.-...+....   ..+.+.-+.++++.+.|++++.+-..|.|.+.
T Consensus       828 a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L  903 (1034)
T KOG4190|consen  828 AGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAIL  903 (1034)
T ss_pred             CCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence            112233322 1133444444 678899999999988777665221   13556779999999999999999999999999


Q ss_pred             ECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEE-EEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCC
Q 003579          502 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL-FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (809)
Q Consensus       502 d~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v-~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~  579 (809)
                      |.++|+.+..+... .....++ .|....++....|.++.| |..-.+....+.+....+..-+  -.-|.-|+++....
T Consensus       904 DaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn  980 (1034)
T KOG4190|consen  904 DARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGN  980 (1034)
T ss_pred             ecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCc
Confidence            99999988776543 3333333 244556777777888888 8777776655555433332211  22466788888888


Q ss_pred             eEEEEEcC-C---ccEEEEe---eeCcceEEEEEcCCCCeEEEEEeCCCeEEE
Q 003579          580 SLRIWDVI-L---ARQIDAI---HVDVSITALSLSPNMDVLATAHVDQNGVYL  625 (809)
Q Consensus       580 ~I~vwd~~-~---~~~i~~~---~~~~~v~~l~~spdg~~lat~~~d~~~i~l  625 (809)
                      .+.||.-. .   -..+..+   ......++++.-|-+.-+..+...|. |.+
T Consensus       981 ~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~-IaL 1032 (1034)
T KOG4190|consen  981 ILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA-IAL 1032 (1034)
T ss_pred             EEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc-eee
Confidence            88888421 1   1112222   23445888888886655555655553 544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.05  E-value=2.2e-07  Score=110.66  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=86.0

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeCcc-----ccc--------ccCccccEEEEEEcCCCCEEE
Q 003579          425 TAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMS-----ERS--------NYAHNGEVVGVACDSTNTLMI  490 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~-----~~~--------~~~h~~~v~~l~~~~~~~~l~  490 (809)
                      .....++++|+|+.++++ +.++.|++||+.++..........     ...        ....-....+++++++|.+++
T Consensus       740 ~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV  819 (1057)
T PLN02919        740 AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV  819 (1057)
T ss_pred             cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence            345678888888755444 455788888887665321110000     000        001112346899999999989


Q ss_pred             EEeCcCeEEEEECCCCceeeeeecC--------------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE
Q 003579          491 SAGYHGDIKVWDFKGRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (809)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~  549 (809)
                      +-..++.|++||..++.........              .....++++++|+++++-+.++.|++||+.+++.
T Consensus       820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            8899999999999887665433211              2577899999999888888999999999998865

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.99  E-value=7.9e-07  Score=95.93  Aligned_cols=307  Identities=13%  Similarity=0.059  Sum_probs=179.9

Q ss_pred             CCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcE----------EEEEEecCCCCEEEEEcCCCcEEEEECCCceeee
Q 003579          192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV----------TALAFSSDGQPLLASGASSGVISIWNLEKRRLQS  261 (809)
Q Consensus       192 ~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V----------~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~  261 (809)
                      .+..+++++.+|.+.-+|.++|+.+-+.........          ..+..  ++. .++.++.+|.+..+|.++|+.+.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~v~v~~~~g~l~ald~~tG~~~W  144 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGG-KVYIGSEKGQVYALNAEDGEVAW  144 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECC-EEEEEcCCCEEEEEECCCCCCcc
Confidence            356788888889999999999998877654321101          01111  233 46677889999999999999888


Q ss_pred             eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEec-----cCCCCCCeeEEEecCCCEEEEEECCC
Q 003579          262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPLCIRFYANGRHILSAGQDR  336 (809)
Q Consensus       262 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (809)
                      ... .. +.+.+--.. .+..++.+..++.+..+|..++...++.....     .+...|    ..  .+..++.++.++
T Consensus       145 ~~~-~~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP----~v--~~~~v~~~~~~g  215 (394)
T PRK11138        145 QTK-VA-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP----AT--AFGGAIVGGDNG  215 (394)
T ss_pred             ccc-CC-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC----EE--ECCEEEEEcCCC
Confidence            776 22 222221111 13356667778887777665553222211000     001111    11  123566677788


Q ss_pred             CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeeccee
Q 003579          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (809)
Q Consensus       337 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  416 (809)
                      .+..++..+++...+.......                                                      +...
T Consensus       216 ~v~a~d~~~G~~~W~~~~~~~~------------------------------------------------------~~~~  241 (394)
T PRK11138        216 RVSAVLMEQGQLIWQQRISQPT------------------------------------------------------GATE  241 (394)
T ss_pred             EEEEEEccCChhhheeccccCC------------------------------------------------------Cccc
Confidence            8888887666543221100000                                                      0000


Q ss_pred             eecCCCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC
Q 003579          417 LRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  494 (809)
Q Consensus       417 ~~~~~~~~~~v~~v~~s~--~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~  494 (809)
                      +       .....+..+|  .+..+++++.+|.+..+|..+|+.+.....       +.   ...+..  .+..++.++.
T Consensus       242 ~-------~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-------~~---~~~~~~--~~~~vy~~~~  302 (394)
T PRK11138        242 I-------DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-------GS---VNDFAV--DGGRIYLVDQ  302 (394)
T ss_pred             h-------hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-------CC---ccCcEE--ECCEEEEEcC
Confidence            0       0000000111  256777788899999999999987765431       11   112222  3556777888


Q ss_pred             cCeEEEEECCCCceeeeeec-C-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee-EEECCCCCE
Q 003579          495 HGDIKVWDFKGRDLKSRWEV-G-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKW  571 (809)
Q Consensus       495 dg~i~iwd~~~~~~~~~~~~-~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~-l~fspdg~~  571 (809)
                      +|.+..+|..+++.+..... . ....+...  .+..+++++.+|.++.+|..+++.+.+.+-+...+.+ ..+  .+..
T Consensus       303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~  378 (394)
T PRK11138        303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDK  378 (394)
T ss_pred             CCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCE
Confidence            99999999999987654432 1 11222222  2677888999999999999999988877644333332 222  2346


Q ss_pred             EEEEeCCCeEEEEEcC
Q 003579          572 LLSSGMDGSLRIWDVI  587 (809)
Q Consensus       572 l~s~s~D~~I~vwd~~  587 (809)
                      |+.++.||.|+.++++
T Consensus       379 l~v~t~~G~l~~~~~~  394 (394)
T PRK11138        379 LLIQARDGTVYAITRP  394 (394)
T ss_pred             EEEEeCCceEEEEeCC
Confidence            7788999999887753

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.96  E-value=5.2e-09  Score=103.18  Aligned_cols=171  Identities=17%  Similarity=0.218  Sum_probs=122.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      .....+..++.+++++++..+....+++.........+....  ........++.+..+........++....+.+|...
T Consensus        63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence            345566778899999999999988777775544322111000  001122233333333333333344555667777777


Q ss_pred             CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE-ecCCCCeeeEEECCCCCEEEEEeCCCeEEE
Q 003579          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (809)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~~l~s~s~D~~I~v  583 (809)
                      .+.....+.+-+.++.++++||++.++++..|..|||-.....-.+..| -||+.-|..++.-++ +.|+++|.|++||+
T Consensus       141 ~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  141 SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            6777777777799999999999999999999999999887766555554 479999999999865 56899999999999


Q ss_pred             EEcCCccEEEEeeeC
Q 003579          584 WDVILARQIDAIHVD  598 (809)
Q Consensus       584 wd~~~~~~i~~~~~~  598 (809)
                      ||+.+|++++++...
T Consensus       220 Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  220 WDITSGKLLDTCDLS  234 (390)
T ss_pred             EecccCCcccccchh
Confidence            999999999877643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.95  E-value=2.5e-08  Score=98.52  Aligned_cols=171  Identities=13%  Similarity=0.194  Sum_probs=123.5

Q ss_pred             ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (809)
Q Consensus       270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  349 (809)
                      ....+..++++++++.+..+....+++++......+++..... ....+.+.|..+......+..-|.+..+|+-.... 
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-  141 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-  141 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence            3445566788888998888888888888776543344443322 33345666666555555554444444444322110 


Q ss_pred             eecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEE
Q 003579          350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  429 (809)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~  429 (809)
                                                                                       ....+..+|-+.++.
T Consensus       142 -----------------------------------------------------------------~~~~~~lGhvSml~d  156 (390)
T KOG3914|consen  142 -----------------------------------------------------------------GRCEPILGHVSMLLD  156 (390)
T ss_pred             -----------------------------------------------------------------cCcchhhhhhhhhhe
Confidence                                                                             111223356689999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCcee
Q 003579          430 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK  509 (809)
Q Consensus       430 v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  509 (809)
                      ++++||+++++++..|+.|++-.......+..+.       -+|..-|..+++-++ +.|+++|.|++|++||+.+|+.+
T Consensus       157 VavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-------lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  157 VAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-------LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeecCCCCEEEEecCCceEEEEecCcccchhhhc-------cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            9999999999999999999999988887777776       389999999999754 56999999999999999999999


Q ss_pred             eeeecC
Q 003579          510 SRWEVG  515 (809)
Q Consensus       510 ~~~~~~  515 (809)
                      .++...
T Consensus       229 ~t~dl~  234 (390)
T KOG3914|consen  229 DTCDLS  234 (390)
T ss_pred             cccchh
Confidence            877654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=5.1e-09  Score=106.38  Aligned_cols=288  Identities=14%  Similarity=0.209  Sum_probs=179.2

Q ss_pred             EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc-------eeeeeeecccccceEEEEEecCCCEEEEEcC
Q 003579          216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (809)
Q Consensus       216 ~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  288 (809)
                      +..+.+| ...|..++-..+.+ -+++++.|.+|++|.++..       .+..+.. +|..+|.++.|..+.+.++++  
T Consensus       728 L~nf~GH-~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~Sc--  802 (1034)
T KOG4190|consen  728 LCNFTGH-QEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASC--  802 (1034)
T ss_pred             eecccCc-HHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeec--
Confidence            3444444 67777776655554 6889999999999998642       3556666 899999999999998888775  


Q ss_pred             CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec--CCCEEEE-EECCCCEEEEEeeecccceecchhhHHHHHhhcc
Q 003579          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (809)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  365 (809)
                      |+.|.+||--.+....+.... ..| +.+..+...+  +...++. |+...+++++|.+...-..++..           
T Consensus       803 D~giHlWDPFigr~Laq~~da-pk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV-----------  869 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDA-PKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV-----------  869 (1034)
T ss_pred             cCcceeecccccchhHhhhcC-ccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe-----------
Confidence            789999975443211111111 112 2233333333  3333333 46788999999876654443211           


Q ss_pred             chhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC
Q 003579          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  445 (809)
Q Consensus       366 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~  445 (809)
                                                                          ....+....++++++.+.|+++++|-++
T Consensus       870 ----------------------------------------------------cna~~Pna~~R~iaVa~~GN~lAa~LSn  897 (1034)
T KOG4190|consen  870 ----------------------------------------------------CNAPGPNALTRAIAVADKGNKLAAALSN  897 (1034)
T ss_pred             ----------------------------------------------------ccCCCCchheeEEEeccCcchhhHHhcC
Confidence                                                                1111233678899999999999999999


Q ss_pred             CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE-EECCCCceeeeeecCCCeEEEEEe
Q 003579          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV-WDFKGRDLKSRWEVGCSLVKIVYH  524 (809)
Q Consensus       446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~i~~~~~s  524 (809)
                      |.|.+.|.++|..+..+.        ...-....++ .|..+.++....|.++.+ |....+....+.+........ ..
T Consensus       898 Gci~~LDaR~G~vINswr--------pmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahf-lq  967 (1034)
T KOG4190|consen  898 GCIAILDARNGKVINSWR--------PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHF-LQ  967 (1034)
T ss_pred             CcEEEEecCCCceeccCC--------cccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhh-hh
Confidence            999999999999887664        2222333333 355677888888888888 877666554444322111110 11


Q ss_pred             eCCCEEEEEeCCCeEEEEEcCC----CeEEEEEe--cCCCCeeeEEECCCCCEEEEEeCCCeEEE
Q 003579          525 RVNGLLATVADDLVIRLFDVVA----LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (809)
Q Consensus       525 ~~~~~la~~~~d~~I~v~d~~~----~~~~~~~~--~h~~~I~~l~fspdg~~l~s~s~D~~I~v  583 (809)
                      .-|..++++.....+.||--..    ...+.+++  ...+..++++--|-++-+..|...|.|++
T Consensus       968 svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  968 SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            1244556665555666663110    01122222  23466788888887766667888888765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.3e-08  Score=99.65  Aligned_cols=254  Identities=16%  Similarity=0.229  Sum_probs=179.1

Q ss_pred             ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC-CCCEEEEEee
Q 003579          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVI  344 (809)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~  344 (809)
                      -|...|+.+... -.+++++++.||.++.|.-... .....+..+..|...+.+++.+-++..+.|.+. |..++++|+.
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            377777776654 3458999999999999943321 222455666788899999999999999999777 9999999987


Q ss_pred             ecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCC
Q 003579          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (809)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (809)
                      +-....-+....+                                                                  +
T Consensus        85 n~DminmiKL~~l------------------------------------------------------------------P   98 (558)
T KOG0882|consen   85 NFDMINMIKLVDL------------------------------------------------------------------P   98 (558)
T ss_pred             ccchhhhcccccC------------------------------------------------------------------C
Confidence            6433221111000                                                                  0


Q ss_pred             CCeEEEEEcCCC----CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          425 TAVKACTISACG----NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       425 ~~v~~v~~s~~g----~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                      +.+.  .+...|    ...+..-.+|.+.++|-........+.      ..-|..+|..+.+.+-+..+++....|.|..
T Consensus        99 g~a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f------kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy  170 (558)
T KOG0882|consen   99 GFAE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF------KKLHFSPVKKIRYNQAGDSAVSIDISGMVEY  170 (558)
T ss_pred             CceE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee------cccccCceEEEEeeccccceeeccccceeEe
Confidence            1111  111111    122233456888999876665333332      1479999999999999999999999999999


Q ss_pred             EECCC------Cceeeee----------ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec---------
Q 003579          501 WDFKG------RDLKSRW----------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG---------  555 (809)
Q Consensus       501 wd~~~------~~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~---------  555 (809)
                      |....      .++...+          .......++.|+|++..+++-+.|..|++++..++++++.+..         
T Consensus       171 Ws~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~  250 (558)
T KOG0882|consen  171 WSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP  250 (558)
T ss_pred             ecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence            98773      1111111          2236788999999999999999999999999999887665431         


Q ss_pred             -----------------------CC-CCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee
Q 003579          556 -----------------------HT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  596 (809)
Q Consensus       556 -----------------------h~-~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~  596 (809)
                                             |. ..-+.+.|...|++|+.++.=| |+|.++.++.+++.+.
T Consensus       251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                                   21 1245678999999999998877 8999999998887764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=3.8e-06  Score=84.20  Aligned_cols=184  Identities=15%  Similarity=0.083  Sum_probs=125.2

Q ss_pred             eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCc--------Ce
Q 003579          427 VKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------GD  497 (809)
Q Consensus       427 v~~v~~s-~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--------g~  497 (809)
                      ...+++. ++ ..++++...+ +.++|..++..........   ........+.++++++|++.++....        |.
T Consensus        42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~---~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD---GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEET---TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred             CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC---CCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence            6667777 55 4555555544 5566998886655443100   01145678999999999988776643        56


Q ss_pred             EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEE-EEeCCCeEEEEEcCCC-e-E--EEEE---ecCCCCeeeEEECCCC
Q 003579          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDVVAL-R-M--VRKF---EGHTDRITDFCFSEDG  569 (809)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~d~~I~v~d~~~~-~-~--~~~~---~~h~~~I~~l~fspdg  569 (809)
                      |..++.. ++.......-...+.++|+|+++.|. +-+..+.|..+++... . .  .+.+   ....+..-.+++..+|
T Consensus       117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            7777777 56555555557789999999999776 4566789999998632 1 1  2222   2223347789999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCccEEEEeeeC-cceEEEEEc-CCCCeEEEEE
Q 003579          570 KWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLS-PNMDVLATAH  617 (809)
Q Consensus       570 ~~l~s~s~D~~I~vwd~~~~~~i~~~~~~-~~v~~l~~s-pdg~~lat~~  617 (809)
                      ++.++....+.|.++|.. |+++..+..+ ..+++++|. ++.+.|..++
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            988887788999999966 9999999887 569999994 6766665544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.90  E-value=1.5e-08  Score=106.74  Aligned_cols=198  Identities=17%  Similarity=0.269  Sum_probs=147.0

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-ce---EEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEEeeC-
Q 003579          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KK---LYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRY-  212 (809)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~---~~~~~~~~~~I~~l~~sp--~~~~la~g~~dg~i~iwd~~~-  212 (809)
                      ...+.++|.+  .-++.++..| +.+.|+... .+   ++.+..  -.|-...|+|  ..++-++......-.+|++.. 
T Consensus        27 ~~a~si~p~g--rdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp--w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   27 FNAVSINPSG--RDIVLASRQG-LYIIDLDDPFTPPRWLHHITP--WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             ccceeecccc--chhhhhhhcC-eEEEeccCCCCCceeeeccCc--chhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            3456688888  7799998888 777777543 22   222222  2345556665  456777777777788999863 


Q ss_pred             -CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce-eeeeeecccccceEEEEEecCCCEEEEEcCCC
Q 003579          213 -DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSASADN  290 (809)
Q Consensus       213 -~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~  290 (809)
                       .+.+.-+.++|...|+.+.|.|....++++++.|-.+..||+++.. .+.... .-...-..++|+...+.+...+..+
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlasshg~  180 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSHGN  180 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCcchhhhccCC
Confidence             3455555566688999999999998899999999999999998874 344444 4445678899988776666667778


Q ss_pred             cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeec
Q 003579          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQD  346 (809)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~  346 (809)
                      .|++||...+.   ..+...++|...|+.+.|.. ....+.+++.||+++.||....
T Consensus       181 ~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  181 DIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            89999987664   45667778999999999876 3457889999999999997654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.89  E-value=3.9e-07  Score=85.02  Aligned_cols=235  Identities=9%  Similarity=0.003  Sum_probs=148.2

Q ss_pred             eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEE-EEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCC
Q 003579          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW  180 (809)
Q Consensus       102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~  180 (809)
                      .-.+|+.++..|...+|...+.+.....   ...+...+... -.....  -.+..++.|.++++.+++.+..-......
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~---cd~snn~v~~~~r~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~~  157 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQ---CDVSNNDVTLVKRYCDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHNQ  157 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceee---ecccccchhhhhhhcccc--cceeeccCCcceeEEEEecCcccceeecc
Confidence            3568999989999999999877653211   11111110000 000111  24777788888888887654332222221


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe--EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~  258 (809)
                      .-.+.+++++++++++++.+....|..|.+....  .+........+.-.+.+|+.... .+|++..||++.|||++...
T Consensus       158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccc
Confidence            2338899999999999999999999999987543  23323344455667889998887 89999999999999998763


Q ss_pred             e----eeeeecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCCceeEE---eccCCC-CCCeeEEEecCCCE
Q 003579          259 L----QSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLR---FRSGHS-APPLCIRFYANGRH  328 (809)
Q Consensus       259 ~----~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~---~~~~h~-~~v~~i~~~~~~~~  328 (809)
                      .    ....+..|.+.+..+.|++.|.  +|+..-.-+.+.+-|++....-..++.   ....|. ..+....|+.++..
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence            2    2223346999999999998775  444444456677776655432211111   111233 33777778777766


Q ss_pred             EEEEECCCCEEEEEe
Q 003579          329 ILSAGQDRAFRLFSV  343 (809)
Q Consensus       329 l~s~~~dg~i~~wd~  343 (809)
                      +.+...+. +.-|++
T Consensus       317 ~~v~~e~~-~ae~ni  330 (344)
T KOG4532|consen  317 NDVKNELQ-GAEYNI  330 (344)
T ss_pred             cccccchh-hheeec
Confidence            66665543 344444

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.89  E-value=1.1e-07  Score=90.35  Aligned_cols=335  Identities=14%  Similarity=0.192  Sum_probs=200.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe-----EEEEEeccC-----------CCcEEEEEEecCC-CCEEEEE
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-----ELVTFTHSM-----------RGAVTALAFSSDG-QPLLASG  243 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~-----~~~~~~~~~-----------~~~V~~l~fs~dg-~~~lasg  243 (809)
                      ...|+++.|...|.|||+|...|+|.+|.-....     -...|..+.           ...|..+.|..++ +..+...
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            5679999999999999999999999999765332     111222221           2467888887553 3455556


Q ss_pred             cCCCcEEEEECCCcee------------------------------------------eeeeecccccceEEEEEecCCC
Q 003579          244 ASSGVISIWNLEKRRL------------------------------------------QSVIREAHDNAIISLHFFANEP  281 (809)
Q Consensus       244 ~~dg~I~iwdl~~~~~------------------------------------------~~~~~~~h~~~V~~l~~~~~~~  281 (809)
                      +.|.+|++|.+....+                                          .+....+|.--|.++.|..|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            7799999998754310                                          0111136778889999999988


Q ss_pred             EEEEEcCCCcEEEEEeeCCCCCceeEEeccCC-----CCCCeeEEEecC-CCEEEEEECCCCEEEEEeeecccceecchh
Q 003579          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-----SAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQR  355 (809)
Q Consensus       282 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-----~~~v~~i~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  355 (809)
                      .++++. |=.|.+|+++..++...++... .|     ..-|++..|+|. ...+...+..|.|++-|+++......-.  
T Consensus       186 t~lSaD-dLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~--  261 (460)
T COG5170         186 TLLSAD-DLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK--  261 (460)
T ss_pred             eeeecc-ceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch--
Confidence            888764 6789999988877655544332 33     235778888883 4456667778899998886432110000  


Q ss_pred             hHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCC
Q 003579          356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC  435 (809)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~  435 (809)
                                                                                            ..-...    
T Consensus       262 ----------------------------------------------------------------------klfe~~----  267 (460)
T COG5170         262 ----------------------------------------------------------------------KLFELT----  267 (460)
T ss_pred             ----------------------------------------------------------------------hhhhhc----
Confidence                                                                                  000000    


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-ceeeeeec
Q 003579          436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEV  514 (809)
Q Consensus       436 g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~  514 (809)
                              .||          ....-        ..+-...|..+.|+++|+++++-.. -+|++||.+.. .++.++..
T Consensus       268 --------~D~----------v~~~f--------f~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         268 --------IDG----------VDVDF--------FEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             --------cCc----------ccchh--------HHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence                    000          00000        0144567889999999999988766 68999998753 45555533


Q ss_pred             C-------------C---CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-----eEEEEEecCCC----------CeeeE
Q 003579          515 G-------------C---SLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----RMVRKFEGHTD----------RITDF  563 (809)
Q Consensus       515 ~-------------~---~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-----~~~~~~~~h~~----------~I~~l  563 (809)
                      +             .   .--.+.|+-|.+.+.+|+.....-+|-..+.     -.+..+..|..          .|...
T Consensus       321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kk  400 (460)
T COG5170         321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKK  400 (460)
T ss_pred             HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccc
Confidence            2             1   1234678888888999888777777754321     12222222221          11111


Q ss_pred             EE-CCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579          564 CF-SEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       564 ~f-spdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (809)
                      .- ..+....++.+.+|.+..-.=+     +.+.....|....|+|-.+-+|.+..+.  ++++.
T Consensus       401 d~~kn~~~rs~ss~a~g~~~~~eD~-----d~ld~~k~ilh~sWhp~e~svaiaatnn--lfvfs  458 (460)
T COG5170         401 DKLKNNDWRSVSSSADGFVVACEDP-----DNLDLLKKILHRSWHPFEDSVAIAATNN--LFVFS  458 (460)
T ss_pred             cccccccccccccccCcceeeccCc-----chhHHHHHHHhhccCCcccceeeeecCc--eEEEe
Confidence            11 1111224444445544332111     2223333466778999888888887665  66654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.88  E-value=2.2e-06  Score=81.64  Aligned_cols=146  Identities=19%  Similarity=0.167  Sum_probs=96.8

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEeeCCe--EEEE--EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeee
Q 003579          187 CVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVT--FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV  262 (809)
Q Consensus       187 l~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~--~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~  262 (809)
                      ++.+++|++||+.- |..|.|-..+.+-  .+.+  +..+..-.=.-++||||+. +||.+...|+|+++|+.... +..
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~-lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSE-LFV   79 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccce-eEE
Confidence            56788999888764 5677776655431  2222  2233234568899999999 99999999999999997643 334


Q ss_pred             eeccc------ccceEEEEEecCC------CEEEEEcCCCcEEEEEeeCCC-CCceeEEe--c-cCCCCCCeeEEEecCC
Q 003579          263 IREAH------DNAIISLHFFANE------PVLMSASADNSIKMWIFDTTD-GDPRLLRF--R-SGHSAPPLCIRFYANG  326 (809)
Q Consensus       263 ~~~~h------~~~V~~l~~~~~~------~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~--~-~~h~~~v~~i~~~~~~  326 (809)
                      +..++      ...|.++.|.+..      ..|+....+|.++-|-+...+ ...+....  + ..+...|.++.|+|.-
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            43233      3567778886532      156666778888888775431 12222222  2 2346789999999998


Q ss_pred             CEEEEEECC
Q 003579          327 RHILSAGQD  335 (809)
Q Consensus       327 ~~l~s~~~d  335 (809)
                      +.|+.||..
T Consensus       160 ~LLlVgG~~  168 (282)
T PF15492_consen  160 RLLLVGGCE  168 (282)
T ss_pred             CEEEEeccC
Confidence            888887753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=1.5e-06  Score=93.22  Aligned_cols=164  Identities=12%  Similarity=0.077  Sum_probs=104.4

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCE-EEEEeC---CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC
Q 003579          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDV-VAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (809)
Q Consensus       161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~-la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg  236 (809)
                      ..|.+-|..... .+.+.... .+....|+|||+. ++..+.   +..|.++|+.+++...... . .+......|+|||
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~-~g~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S-QGMLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C-CCcEEeeEECCCC
Confidence            356666764443 33343333 7889999999984 664433   3569999998887554433 2 5667788999999


Q ss_pred             CCEEEEEcCC--CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCC
Q 003579          237 QPLLASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH  313 (809)
Q Consensus       237 ~~~lasg~~d--g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (809)
                      +.++++.+.+  ..|.++|+.+++... +. .+........|+|||+.|+..+ ..+.-.+|.++..++..+.+.. .+.
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~  321 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK  321 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEE-cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC
Confidence            8566665544  568888988876443 33 2333344568999998666555 4565566666665544422221 122


Q ss_pred             CCCCeeEEEecCCCEEEEEECC
Q 003579          314 SAPPLCIRFYANGRHILSAGQD  335 (809)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~~~d  335 (809)
                      .    ...|+|||+.|+..+..
T Consensus       322 ~----~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        322 N----NSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             c----CceECCCCCEEEEEEcC
Confidence            1    24899999998876643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.87  E-value=1.6e-05  Score=74.20  Aligned_cols=109  Identities=18%  Similarity=0.220  Sum_probs=84.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~  231 (809)
                      ..++.|+..+.+.-.|..+|+++.+-.- ...|.+-+.- -|++++.|+..|.+.+.+.++|.....+..-..-.+ ...
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~  100 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQ  100 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceE
Confidence            6789999999999999999999876432 2334333322 578899999999999999999988887775312222 233


Q ss_pred             EecCCCCEEEEEcCCCcEEEEECCCceeeeeee
Q 003579          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (809)
Q Consensus       232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~  264 (809)
                      ..+++. ++..|+.|++.+..|..+...+...+
T Consensus       101 ~d~~~g-lIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  101 CDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             EcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence            456777 89999999999999999998888766

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.84  E-value=6.1e-06  Score=78.76  Aligned_cols=43  Identities=28%  Similarity=0.449  Sum_probs=38.1

Q ss_pred             CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeC
Q 003579          556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD  598 (809)
Q Consensus       556 h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~  598 (809)
                      ....|..|..||||+.||+...+|.|.+|++++-++...+..+
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            4577999999999999999999999999999998887776544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.83  E-value=5.3e-08  Score=90.31  Aligned_cols=187  Identities=12%  Similarity=0.165  Sum_probs=114.6

Q ss_pred             EEEEEeCCCeEEEEeCCCCce------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE-E
Q 003579          153 KVIVGSQEGSLQLWNISTKKK------------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-F  219 (809)
Q Consensus       153 ~l~~~~~dg~i~lwd~~~~~~------------~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~  219 (809)
                      .++++..++.+...+.-++.+            .+.+..|.++-.+-+.+--+..+++++.||.+.+++.+....+.. +
T Consensus        49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i  128 (319)
T KOG4714|consen   49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI  128 (319)
T ss_pred             eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc
Confidence            355555555555554433332            333333433333333344466899999999999999875322211 1


Q ss_pred             eccCCCcEEEEEEecCCCCEEEEEc-----CCCcEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEE
Q 003579          220 THSMRGAVTALAFSSDGQPLLASGA-----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIK  293 (809)
Q Consensus       220 ~~~~~~~V~~l~fs~dg~~~lasg~-----~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~  293 (809)
                      ...+. .-.+.+....+. ++.++.     .-+..+.|+++..+.+..-. .....|.+++-.|.++ ++++|+.||.+.
T Consensus       129 ~~~~~-~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~  205 (319)
T KOG4714|consen  129 PSIHS-GSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVG  205 (319)
T ss_pred             ccccc-cccccceeeccc-EEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEE
Confidence            11111 112222333444 333322     23456667665543332222 1223489999888654 677788899999


Q ss_pred             EEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeee
Q 003579          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~  345 (809)
                      +||.+...   .+...+..|..++..+.|+| ++..|+++++||+++.||..+
T Consensus       206 l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  206 LWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99988763   34455678999999999999 788999999999999999753

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.3e-07  Score=94.32  Aligned_cols=275  Identities=15%  Similarity=0.119  Sum_probs=180.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC--Ce-EEEEEeccCCCcEEEEEEecCCCCEEEEEcC-CCcEEEEECC
Q 003579          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--DE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLE  255 (809)
Q Consensus       180 ~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~--~~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~-dg~I~iwdl~  255 (809)
                      |...|+.+..+. .+++.+++.||.++.|.-..  +. .+..+.. |-+.|.+++.+-+|. ++.+.+. |..++++|++
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccce-eEeeccCcccceeEEEee
Confidence            667777766554 47999999999999997542  22 2223333 367899999999998 8888776 9999999998


Q ss_pred             CceeeeeeecccccceEEEEEecCCC--EEE-EEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579          256 KRRLQSVIREAHDNAIISLHFFANEP--VLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (809)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~  332 (809)
                      +-..+..++...--.-.+...+++..  .++ +.-.++.+.++|  ......+....-.-|..+|.++.+.+-+..+++.
T Consensus        85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD--~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD--GFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEEC--CcCCcCccceecccccCceEEEEeeccccceeec
Confidence            87666555422211122222233221  232 233467777774  3333334555566799999999999999999999


Q ss_pred             ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (809)
Q Consensus       333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  412 (809)
                      ...|.|..|.....-+.   ....                                              ..|.+..   
T Consensus       163 D~~gmVEyWs~e~~~qf---Pr~~----------------------------------------------l~~~~K~---  190 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQF---PRTN----------------------------------------------LNFELKH---  190 (558)
T ss_pred             cccceeEeecCCCcccC---cccc----------------------------------------------ccccccc---
Confidence            99999999987531100   0000                                              0011100   


Q ss_pred             cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccc------------------------
Q 003579          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER------------------------  468 (809)
Q Consensus       413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~------------------------  468 (809)
                       +..+-.........+++.++|+|..+..-..|..|++++..+|...+.+......                        
T Consensus       191 -eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaver  269 (558)
T KOG0882|consen  191 -ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVER  269 (558)
T ss_pred             -cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHh
Confidence             0011111123477889999999999999999999999999999887766433211                        


Q ss_pred             cccCccc-cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee
Q 003579          469 SNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE  513 (809)
Q Consensus       469 ~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  513 (809)
                      .+..|.. .-+.+.|+..+.+|+-++.=| |++.++.+++..+.+.
T Consensus       270 elek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  270 ELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence            1122322 345678899999998887644 8899999888777664

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.82  E-value=2.1e-06  Score=92.49  Aligned_cols=188  Identities=10%  Similarity=-0.000  Sum_probs=124.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---C-cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579          426 AVKACTISACGNFAVLGTAG---G-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g~~~---g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw  501 (809)
                      ....++++++|+++++.+.+   | .+...+.........+..          ..  ..++.++|++...  .++.|.+.
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni----------~~--iea~vkdGK~~~V--~gn~V~VI  301 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI----------AR--IEEAVKAGKFKTI--GGSKVPVV  301 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch----------HH--HHHhhhCCCEEEE--CCCEEEEE
Confidence            44567889999999888632   1 222222211111111100          00  0023446776655  36789999


Q ss_pred             ECCC-----CceeeeeecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCCe------------EEEEEecCCCCeeeE
Q 003579          502 DFKG-----RDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALR------------MVRKFEGHTDRITDF  563 (809)
Q Consensus       502 d~~~-----~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~~------------~~~~~~~h~~~I~~l  563 (809)
                      |..+     .+.+..+........+.++|||+++++++. +.++.|+|+.+.+            ++.+..--.+ -...
T Consensus       302 D~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHT  380 (635)
T PRK02888        302 DGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHT  380 (635)
T ss_pred             ECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceE
Confidence            9998     577888888899999999999998887765 8899999998855            2444443233 3457


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCC----------ccEEEEeeeCcceEEEEE------cCCCCeEEEEEeCCCeEEEee
Q 003579          564 CFSEDGKWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSITALSL------SPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       564 ~fspdg~~l~s~s~D~~I~vwd~~~----------~~~i~~~~~~~~v~~l~~------spdg~~lat~~~d~~~i~lW~  627 (809)
                      +|.++|....|-..|..|..||+.+          ...++.+..+-.+-.+.-      .|||+||++...-.       
T Consensus       381 aFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~s-------  453 (635)
T PRK02888        381 AFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFS-------  453 (635)
T ss_pred             EECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccc-------
Confidence            8999999888888999999999987          345566655544444444      68999998875433       


Q ss_pred             cCcccCCCC
Q 003579          628 NRCMFSGDS  636 (809)
Q Consensus       628 ~~~~~~~~~  636 (809)
                       +.+|-|+.
T Consensus       454 -kdrfl~vg  461 (635)
T PRK02888        454 -KDRFLPVG  461 (635)
T ss_pred             -cccccCCC
Confidence             35566554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.81  E-value=6.3e-08  Score=89.83  Aligned_cols=166  Identities=19%  Similarity=0.295  Sum_probs=109.1

Q ss_pred             eeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc-eEEEEcCCCCCEEEEEEcCCCCEEEEEe-----CCC
Q 003579          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFKGWGSSISSCVSSPALDVVAVGC-----SDG  203 (809)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~la~g~-----~dg  203 (809)
                      ...+..+.+......++..+  +.+++++.||.+.+.+.+.-. ..+....-...-.+.+....+..+.++.     .-+
T Consensus        82 ~~~~a~~sep~p~~~~s~~~--t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTD--NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD  159 (319)
T ss_pred             eeeeeccCCCCCcccccccC--CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence            34444444444444455555  789999999999999875411 1111111111111222333444444432     123


Q ss_pred             eEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC-CE
Q 003579          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PV  282 (809)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~-~~  282 (809)
                      ..+.|+++..+.+..-... ...|++++-+|..++++++|+.||.+.+||.++......+..+|..+++.+.|+|.. ..
T Consensus       160 ~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             ceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            4566666544433333333 345999999999888999999999999999999866555555999999999999954 58


Q ss_pred             EEEEcCCCcEEEEEee
Q 003579          283 LMSASADNSIKMWIFD  298 (809)
Q Consensus       283 l~s~s~d~~i~vw~~~  298 (809)
                      |++++.||++..||-.
T Consensus       239 Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAS  254 (319)
T ss_pred             eeEecCCCcEEEEcCC
Confidence            9999999999999765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.78  E-value=1.9e-07  Score=88.76  Aligned_cols=192  Identities=19%  Similarity=0.295  Sum_probs=129.7

Q ss_pred             CCCCCCEEEEEeCCCeEEEEeCCCCc--e-----------------E-----------------------EEE-cCCCCC
Q 003579          147 PDTYLNKVIVGSQEGSLQLWNISTKK--K-----------------L-----------------------YEF-KGWGSS  183 (809)
Q Consensus       147 p~~~~~~l~~~~~dg~i~lwd~~~~~--~-----------------~-----------------------~~~-~~~~~~  183 (809)
                      .++..+.++..+.|.+|++|.+....  .                 +                       +.. ..|.-.
T Consensus        95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh  174 (460)
T COG5170          95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH  174 (460)
T ss_pred             cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence            34444778888899999999874320  0                 0                       001 346667


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE---EEEEeccC----CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC
Q 003579          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTFTHSM----RGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (809)
Q Consensus       184 I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~---~~~~~~~~----~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~  256 (809)
                      |.++.|..|...++++. |-.|.+|++.--..   +..++.+.    ..-|++..|+|....++.-.+..|.|++-|++.
T Consensus       175 iNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         175 INSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             eeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            88899999888887764 57899999874332   22222221    246899999998765777777899999999984


Q ss_pred             ceee------ee--ee-------cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC-------
Q 003579          257 RRLQ------SV--IR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-------  314 (809)
Q Consensus       257 ~~~~------~~--~~-------~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~-------  314 (809)
                      ..+.      ..  +.       ..-...|..+.|+++|+++++-+. .++++||++...   .++.+..-|.       
T Consensus       254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k---~pikTi~~h~~l~~~l~  329 (460)
T COG5170         254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK---NPIKTIPMHCDLMDELN  329 (460)
T ss_pred             hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc---CCceeechHHHHHHHHH
Confidence            3211      00  00       122367889999999999887664 689999998765   3344433331       


Q ss_pred             -----CCC---eeEEEecCCCEEEEEECCCCEEEEEe
Q 003579          315 -----APP---LCIRFYANGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       315 -----~~v---~~i~~~~~~~~l~s~~~dg~i~~wd~  343 (809)
                           ..|   ..+.|+.|.+.+++|+......++-+
T Consensus       330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence                 122   35778889999999998888887764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.77  E-value=2.4e-05  Score=78.17  Aligned_cols=291  Identities=13%  Similarity=0.135  Sum_probs=167.0

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEEeeCCeEEEEEeccCCCc----
Q 003579          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHNVRYDEELVTFTHSMRGA----  226 (809)
Q Consensus       161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~----------~dg~i~iwd~~~~~~~~~~~~~~~~~----  226 (809)
                      +++.++|.++++.+-.+..  +-.-.+..+|+++.++++.          ..-.|.+||..+-.....+....+..    
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4799999999998877764  2334467899999888753          23469999999998888777553212    


Q ss_pred             --EEEEEEecCCCCEEEEE--cCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCC
Q 003579          227 --VTALAFSSDGQPLLASG--ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (809)
Q Consensus       227 --V~~l~fs~dg~~~lasg--~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~  302 (809)
                        ...++++.||+ ++.+.  +....|.|-|+..++.+..+..   ..+..+--+. ...+.+.+.||++....++....
T Consensus        95 ~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~---PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   95 PYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDT---PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGK  169 (342)
T ss_dssp             --GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEG---TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSS
T ss_pred             ccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecC---CCEEEEEecC-CCceEEEecCCceEEEEECCCCC
Confidence              23467888998 54443  3556899999999999888762   2222222222 24577888899999998886543


Q ss_pred             Ccee-EEeccCCCCCCe-eEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579          303 DPRL-LRFRSGHSAPPL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (809)
Q Consensus       303 ~~~~-~~~~~~h~~~v~-~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (809)
                      ..+. ...+.....++. .-.+...+..++--+.+|.|+-.++........                             
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~-----------------------------  220 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG-----------------------------  220 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-----------------------------
T ss_pred             EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc-----------------------------
Confidence            2211 112222222222 333444555566677888877777654432111                             


Q ss_pred             eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcee
Q 003579          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISR  459 (809)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~  459 (809)
                                            .-|++-.....               .-.|-|.|-.++.. -..+.+++.- ..+.  
T Consensus       221 ----------------------~~~~~~t~~e~---------------~~~WrPGG~Q~~A~~~~~~rlyvLM-h~g~--  260 (342)
T PF06433_consen  221 ----------------------KPWSLLTDAEK---------------ADGWRPGGWQLIAYHAASGRLYVLM-HQGG--  260 (342)
T ss_dssp             ----------------------EEEESS-HHHH---------------HTTEEE-SSS-EEEETTTTEEEEEE-EE----
T ss_pred             ----------------------CcccccCcccc---------------ccCcCCcceeeeeeccccCeEEEEe-cCCC--
Confidence                                  01111000000               00122222111111 1122222210 0000  


Q ss_pred             eeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCC-EEEEE-eCCC
Q 003579          460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATV-ADDL  537 (809)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~-~~d~  537 (809)
                                ...|+.+                  ...|.++|+.+++.+.++....++.++..+.+.+ +|++. ..++
T Consensus       261 ----------~gsHKdp------------------gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  261 ----------EGSHKDP------------------GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             ----------TT-TTS-------------------EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTT
T ss_pred             ----------CCCccCC------------------ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCC
Confidence                      0123221                  1247889999999999999998999999999877 55444 4579


Q ss_pred             eEEEEEcCCCeEEEEEec
Q 003579          538 VIRLFDVVALRMVRKFEG  555 (809)
Q Consensus       538 ~I~v~d~~~~~~~~~~~~  555 (809)
                      .+.+||..+++.++++.+
T Consensus       313 ~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  313 TLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEETTT--EEEEE--
T ss_pred             eEEEEeCcCCcEEeehhc
Confidence            999999999999998874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.76  E-value=7.7e-05  Score=69.84  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=79.0

Q ss_pred             eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCC
Q 003579          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG  181 (809)
Q Consensus       102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~  181 (809)
                      -|++++.|...|.+.+-+.++++.    +..+...........+.+++  ..|+.|+.|++.+..|.++..+++..+...
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQ----IWNFVILETVKVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhh----eeeeeehhhhccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCC
Confidence            588899999999999999999987    45555555555566678888  789999999999999999999999987655


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC
Q 003579          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD  213 (809)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~  213 (809)
                      +.-.+-+..|-...|..+...|.+.--+.+..
T Consensus       136 ~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  136 GTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            44445556663334555555566665555544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.72  E-value=1.3e-05  Score=80.08  Aligned_cols=216  Identities=14%  Similarity=0.105  Sum_probs=138.1

Q ss_pred             CCeEEEEEcCccEEEEecCCC--CCCcEEEEE-eCCeEEEEECC-eEEEEEC--CeeEEEEccccccEEEEEEeCCEEEE
Q 003579           35 GKAFHIYNCAKLNLVLVGPQL--PKKIRALAS-YRDYTFAAYGN-HIAVVKR--AHQVATWSRHSAKVNLLLLFGEHILS  108 (809)
Q Consensus        35 ~~~i~iwd~~~~~~~~~~~~~--~~~I~~la~-~~~~~~~a~g~-~i~vw~~--~~~~~~~~~h~~~V~~l~~~g~~l~s  108 (809)
                      +++|..||..+++.+-....-  .....+.++ .....|++.++ .++.||.  ++.+-+..............++.++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v   81 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV   81 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence            578999999999988877431  233333344 66677777544 4999995  66665543211111113567888888


Q ss_pred             EeCCCcEEEEEcCCCccccceeeeE-EcCC---ccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC-
Q 003579          109 IDIDGNMFIWAFKGIEENLAPVGHV-KLDD---KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-  183 (809)
Q Consensus       109 ~~~dg~i~vWd~~~~~~~~~~~~~~-~~~~---~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~-  183 (809)
                      ++.++.|..+|..+++.    .-+. ....   ...........+  +.++++..++.|..+|+++|+.+......... 
T Consensus        82 ~~~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   82 GTSDGSLYALDAKTGKV----LWSIYLTSSPPAGVRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EETTSEEEEEETTTSCE----EEEEEE-SSCTCSTB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccceeeeEecccCCcce----eeeeccccccccccccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            88899999999999887    3332 2111   111222222234  67999988999999999999999988764322 


Q ss_pred             ---------EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEEC
Q 003579          184 ---------ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (809)
Q Consensus       184 ---------I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl  254 (809)
                               +.+-....++ .+.++..+|.+.-+|+.+++.+....   ...+..+ ...++. .|++++.++.|..||+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL-PSVDGG-TLYVTSSDGRLYALDL  229 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC-EECCCT-EEEEEETTTEEEEEET
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC-ceeeCC-EEEEEeCCCEEEEEEC
Confidence                     1222222344 77777777854444999999764333   2223332 345565 6676778999999999


Q ss_pred             CCceeeee
Q 003579          255 EKRRLQSV  262 (809)
Q Consensus       255 ~~~~~~~~  262 (809)
                      ++++.+..
T Consensus       230 ~tG~~~W~  237 (238)
T PF13360_consen  230 KTGKVVWQ  237 (238)
T ss_dssp             TTTEEEEE
T ss_pred             CCCCEEeE
Confidence            99987653

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.69  E-value=5.9e-06  Score=82.54  Aligned_cols=220  Identities=19%  Similarity=0.172  Sum_probs=137.8

Q ss_pred             CCcEEEEEcCCCccccceeeeEEcCCccccEE-EEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEc
Q 003579          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS  190 (809)
Q Consensus       112 dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~s  190 (809)
                      +|+|..||..+++.    +-+........... ...+++  +++++++.++.|..||..+|+.+.++.. ...+.... .
T Consensus         2 ~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKE----LWSYDLGPGIGGPVATAVPDG--GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-V   73 (238)
T ss_dssp             TSEEEEEETTTTEE----EEEEECSSSCSSEEETEEEET--TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-E
T ss_pred             CCEEEEEECCCCCE----EEEEECCCCCCCccceEEEeC--CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-e
Confidence            67889999988877    44444422122222 133344  6788889999999999999999998875 22222211 2


Q ss_pred             CCCCEEEEEeCCCeEEEEEeeCCeEEEEE-eccC--CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeeccc
Q 003579          191 PALDVVAVGCSDGKIHVHNVRYDEELVTF-THSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH  267 (809)
Q Consensus       191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~-~~~~--~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h  267 (809)
                      .++..+++++.++.+..+|..+|+.+.+. ....  ......+....++. .++++..++.|..+|+++|+.+..... .
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~-~  151 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPV-G  151 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEES-S
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeec-C
Confidence            34567788888899999999999999885 3221  11122333333355 677777799999999999999888773 3


Q ss_pred             ccc----------eEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579          268 DNA----------IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (809)
Q Consensus       268 ~~~----------V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (809)
                      ...          +.+-....++ .++.++.++.+..+|+....    .+-...  ...+.. ....++..++.++.++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~----~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~  223 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE----KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGR  223 (238)
T ss_dssp             TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE----EEEEEC--SS-ECE-CEECCCTEEEEEETTTE
T ss_pred             CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC----EEEEec--CCCccC-CceeeCCEEEEEeCCCE
Confidence            321          1222222344 67777777753333555442    222221  111111 13457778888889999


Q ss_pred             EEEEEeeecccc
Q 003579          338 FRLFSVIQDQQS  349 (809)
Q Consensus       338 i~~wd~~~~~~~  349 (809)
                      +..||+.+++..
T Consensus       224 l~~~d~~tG~~~  235 (238)
T PF13360_consen  224 LYALDLKTGKVV  235 (238)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCCEE
Confidence            999999887654

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.68  E-value=6.5e-08  Score=65.06  Aligned_cols=39  Identities=41%  Similarity=0.868  Sum_probs=37.3

Q ss_pred             CeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      +++++++.+|.+.|++++|+|++++|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            468899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.67  E-value=7.7e-05  Score=74.75  Aligned_cols=191  Identities=15%  Similarity=0.124  Sum_probs=122.4

Q ss_pred             EEEeCCCCCCEEE-EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579          143 CIMHPDTYLNKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS-PALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (809)
Q Consensus       143 ~~~~p~~~~~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~s-p~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (809)
                      .++.+..  +.|+ +-...+.|..|+..+++... +....  ...+++. ++ ..++++...+ +.++|..+++......
T Consensus         5 p~~d~~~--g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    5 PVWDPRD--GRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEETTT--TEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             eEEECCC--CEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence            4566634  3444 44468899999988876543 22212  6677777 56 5566666544 5556988886544443


Q ss_pred             c--c--CCCcEEEEEEecCCCCEEEEEcCC--------CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEE-EEc
Q 003579          221 H--S--MRGAVTALAFSSDGQPLLASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SAS  287 (809)
Q Consensus       221 ~--~--~~~~V~~l~fs~dg~~~lasg~~d--------g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s  287 (809)
                      .  .  .....+.+++.++|+ +.++....        |.|..++.. ++......  .-...+.++|+|+++.|+ +-+
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEET
T ss_pred             ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeeccc
Confidence            3  1  345789999999998 66655433        568888877 55444333  455678999999998665 556


Q ss_pred             CCCcEEEEEeeCCCCCc---eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579          288 ADNSIKMWIFDTTDGDP---RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       288 ~d~~i~vw~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  344 (809)
                      ..+.|..++++......   +.........+.+-.+++..+|+..++....+.|.+++..
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            67888888877554421   2222233333347889999999887777778888888854

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=3.6e-06  Score=83.35  Aligned_cols=165  Identities=11%  Similarity=0.129  Sum_probs=115.1

Q ss_pred             EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (809)
Q Consensus       163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la  241 (809)
                      +++.+..+.+....+.+|...|..++|||..+ ++..++.+..|.|.|+++...+..+..+  ..+.+++|.-|..+++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeE
Confidence            66676666666777788999999999999877 7888999999999999999999988875  78999999999988999


Q ss_pred             EEcCCCcEEEEECCCceee-eeeec-ccccceEEEEEec------CCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCC
Q 003579          242 SGASSGVISIWNLEKRRLQ-SVIRE-AHDNAIISLHFFA------NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH  313 (809)
Q Consensus       242 sg~~dg~I~iwdl~~~~~~-~~~~~-~h~~~V~~l~~~~------~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (809)
                      .|..+|.|.|||++..+-. ..+.. -...+|..++..+      .+.+|+..+.+  +..|.+....+.+.++.. .+.
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle-le~  329 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE-LEP  329 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc-cCC
Confidence            9999999999999865321 11110 1234555555443      34455555443  567766554433333222 234


Q ss_pred             CCCCeeEEEecCCCEEEEE
Q 003579          314 SAPPLCIRFYANGRHILSA  332 (809)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~  332 (809)
                      .+...++.+++-.+.++..
T Consensus       330 pG~cismqy~~~snh~l~t  348 (463)
T KOG1645|consen  330 PGICISMQYHGVSNHLLLT  348 (463)
T ss_pred             CcceeeeeecCccceEEEE
Confidence            5556667777744444443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=9.8e-08  Score=92.12  Aligned_cols=155  Identities=19%  Similarity=0.275  Sum_probs=123.2

Q ss_pred             eCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-----ceeeeeecCCC
Q 003579          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCS  517 (809)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~  517 (809)
                      +.+-.+.+-|+.+|.... |         ...+.|.++.|...+.++..|...|.|..+|++.+     .+...+-+.+.
T Consensus       231 G~sqqv~L~nvetg~~qs-f---------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss  300 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGHQQS-F---------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS  300 (425)
T ss_pred             cccceeEEEEeecccccc-c---------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence            344457777877765432 1         45678889999988899999999999999999854     56677788899


Q ss_pred             eEEEEEee-CCCEEEEEeCCCeEEEEEcCCCeE---EEEEecCCCCeeeE--EECCCCCEEEEEeCCCeEEEEEcCCccE
Q 003579          518 LVKIVYHR-VNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDF--CFSEDGKWLLSSGMDGSLRIWDVILARQ  591 (809)
Q Consensus       518 i~~~~~s~-~~~~la~~~~d~~I~v~d~~~~~~---~~~~~~h~~~I~~l--~fspdg~~l~s~s~D~~I~vwd~~~~~~  591 (809)
                      ++++..-. ++.+|.+.+.+|.|.+||.+--++   +.++.||...-.-+  -..+....+++++.|...|||.+.+|++
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence            99998777 788999999999999999987776   99999997654433  3456677899999999999999999999


Q ss_pred             EEEeeeCcc-----eEEEEEc
Q 003579          592 IDAIHVDVS-----ITALSLS  607 (809)
Q Consensus       592 i~~~~~~~~-----v~~l~~s  607 (809)
                      +..+..+..     +.+++|.
T Consensus       381 l~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  381 LCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eeccCCCCccccccccceehh
Confidence            998876543     4555554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.64  E-value=2.2e-05  Score=77.59  Aligned_cols=217  Identities=12%  Similarity=0.124  Sum_probs=149.9

Q ss_pred             ceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEECC-CCceeeeee
Q 003579          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-----AGGWIERFNLQ-SGISRGSYL  463 (809)
Q Consensus       390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~-----~~g~i~i~~~~-~~~~~~~~~  463 (809)
                      ..++.+..-...+.+||..+.............  ..--..+||+||++|++.-     ..|.|-+||.. +-..+.++.
T Consensus        18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~   95 (305)
T PF07433_consen   18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP   95 (305)
T ss_pred             eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence            446666677778888888877664433222211  2223568999999999864     45899999999 556666665


Q ss_pred             CcccccccCccccEEEEEEcCCCCEEEEEe------------------CcCeEEEEECCCCceeeeeecC-----CCeEE
Q 003579          464 DMSERSNYAHNGEVVGVACDSTNTLMISAG------------------YHGDIKVWDFKGRDLKSRWEVG-----CSLVK  520 (809)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~~-----~~i~~  520 (809)
                              .|.-.-..+.+.||++.|+.+-                  .+-.+.+.|..+|+++.+....     ..|..
T Consensus        96 --------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   96 --------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             --------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence                    6666667788999997777652                  2234667788899988886542     57999


Q ss_pred             EEEeeCCCEEEEEeCCC-------eEEEEEcCCCeEEEEEe-------cCCCCeeeEEECCCCCEEEEEe-CCCeEEEEE
Q 003579          521 IVYHRVNGLLATVADDL-------VIRLFDVVALRMVRKFE-------GHTDRITDFCFSEDGKWLLSSG-MDGSLRIWD  585 (809)
Q Consensus       521 ~~~s~~~~~la~~~~d~-------~I~v~d~~~~~~~~~~~-------~h~~~I~~l~fspdg~~l~s~s-~D~~I~vwd  585 (809)
                      +++.++|..++..-..|       -+-+++..  +.+..+.       .-.+.|-+|+++++|++++.+| .-+.+.+||
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d  245 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD  245 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence            99999987666554433       23333322  2222222       2346789999999998886555 788999999


Q ss_pred             cCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCC
Q 003579          586 VILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (809)
Q Consensus       586 ~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~  620 (809)
                      ..+|+++...... .+..++-.+++ |++|.+...
T Consensus       246 ~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  246 AATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             CCCCCEeeccccC-ceeeeeecCCc-eEEeCCCcc
Confidence            9999999887654 36677777777 787776543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=1.6e-06  Score=93.23  Aligned_cols=181  Identities=14%  Similarity=0.156  Sum_probs=137.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      ..++|++++  +++++.|+.+|.|++++.+... ...+         .|...      +.+|.+++||+.||+|.|-.+-
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------~~s~~------~~~Gey~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------DHSSS------ILEGEYVASCSDDGKVVIGSLF  101 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------ccccc------ccCCceEEEecCCCcEEEeecc
Confidence            344555554  6899999999999999987654 2222         34333      6689999999999999999999


Q ss_pred             CCceeeeeecCCCeEEEEEeeC-----CCEEEEEeCCCeEEEEEcCC--CeEEEEEecCCCCeeeEEECCCCCEEEEEeC
Q 003579          505 GRDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVVA--LRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (809)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~-----~~~la~~~~d~~I~v~d~~~--~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~  577 (809)
                      +.+...++..+.++.+++++|+     .+.+++|+.-| +.++.-.=  .+.-..+..-.++|.++.|.  |.++|-++.
T Consensus       102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence            9999999999999999999998     56888888888 77764321  11111455567899999995  669999988


Q ss_pred             CCeEEEEEcCCccEEEEeeeCcc-------eEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579          578 DGSLRIWDVILARQIDAIHVDVS-------ITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (809)
Q Consensus       578 D~~I~vwd~~~~~~i~~~~~~~~-------v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (809)
                      +| |+|||+.+++.+..+..+..       ...+.|.++. .|+.|-.|  +|+|-.++.
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d--~v~i~~I~~  234 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD--SVKICSIKK  234 (846)
T ss_pred             CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC--eEEEEEEec
Confidence            88 89999999998877764332       5678887655 56666556  489988873

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.60  E-value=4.4e-05  Score=76.35  Aligned_cols=273  Identities=13%  Similarity=0.185  Sum_probs=154.1

Q ss_pred             CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc----------CCCcEEEEEeeCCCCCceeEEeccCC---
Q 003579          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSGH---  313 (809)
Q Consensus       247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~h---  313 (809)
                      +.+.++|..+++.+..+..+..   -.+..+|+++.+++++          ..-.|.+||..+-.....+. ...+|   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~-iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE-IPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-ETTS-B--
T ss_pred             ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-cCCcchhe
Confidence            4799999999999999884443   3466789999888754          23468889766543222111 11111   


Q ss_pred             -CCCCeeEEEecCCCEEEEEE--CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579          314 -SAPPLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (809)
Q Consensus       314 -~~~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  390 (809)
                       ......++++.||++++...  -..+|.+.|+...+...++...                                   
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-----------------------------------  137 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-----------------------------------  137 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------------------------------
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------------------------------
Confidence             12334567777888777643  2345666776655544443221                                   


Q ss_pred             eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeeeeCccccc
Q 003579          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERS  469 (809)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~  469 (809)
                               ++..+|.                          +.. +-+..-+.||.+..+.+. .|+.......   .-
T Consensus       138 ---------GC~~iyP--------------------------~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~---~F  178 (342)
T PF06433_consen  138 ---------GCWLIYP--------------------------SGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK---VF  178 (342)
T ss_dssp             ---------SEEEEEE--------------------------EET-TEEEEEETTSCEEEEEETSTSSEEEEEEE---ES
T ss_pred             ---------CEEEEEe--------------------------cCC-CceEEEecCCceEEEEECCCCCEeEeecc---cc
Confidence                     1111111                          111 234455666766666665 3333211110   00


Q ss_pred             ccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceee--eeec-----------CCCeEEEEEeeCCCEEEEEeCC
Q 003579          470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV-----------GCSLVKIVYHRVNGLLATVADD  536 (809)
Q Consensus       470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~-----------~~~i~~~~~s~~~~~la~~~~d  536 (809)
                      ...+..-...-++...+..++-.+.+|.|+--|+.......  .+..           .+.-.-+++++..+.|.+....
T Consensus       179 ~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~  258 (342)
T PF06433_consen  179 DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ  258 (342)
T ss_dssp             STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred             CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence            01111122233444455555557788888888887664322  2211           1344567888877666554321


Q ss_pred             ----------CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCC-EEEEE-eCCCeEEEEEcCCccEEEEeeeC
Q 003579          537 ----------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS-GMDGSLRIWDVILARQIDAIHVD  598 (809)
Q Consensus       537 ----------~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~-~l~s~-s~D~~I~vwd~~~~~~i~~~~~~  598 (809)
                                ..|.++|+.+++.++++.. ..++.+|+.+.|.+ +|++. ..++.+.+||..+|+++..+..-
T Consensus       259 g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  259 GGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             --TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             CCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence                      2688999999999999874 24688999999876 56554 46899999999999999988743

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.60  E-value=8.6e-06  Score=87.83  Aligned_cols=104  Identities=21%  Similarity=0.261  Sum_probs=75.1

Q ss_pred             ccccEEEEEEcCCCCEEEEEe-CcCeEEEEECCCCc------------eeeeeecCCCeEEEEEeeCCCEEEEEeCCCeE
Q 003579          473 HNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRD------------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVI  539 (809)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~------------~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I  539 (809)
                      -.....++.++|||+++++++ .+.+|.+.|+.+.+            ...+.+........+|.++|....+-.-|..|
T Consensus       319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv  398 (635)
T PRK02888        319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQI  398 (635)
T ss_pred             CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeeccee
Confidence            345567788888888777665 57888888887754            35556666677788999999888888889999


Q ss_pred             EEEEcCC----------CeEEEEEecCCCCee-----eEEECCCCCEEEEEe
Q 003579          540 RLFDVVA----------LRMVRKFEGHTDRIT-----DFCFSEDGKWLLSSG  576 (809)
Q Consensus       540 ~v~d~~~----------~~~~~~~~~h~~~I~-----~l~fspdg~~l~s~s  576 (809)
                      ..||+.+          ...+.++.-|-.+..     .=.-.|||+||++..
T Consensus       399 ~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        399 VKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             EEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            9999986          345665654443322     223478999999874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.58  E-value=2.1e-05  Score=77.62  Aligned_cols=197  Identities=12%  Similarity=0.155  Sum_probs=143.8

Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCC-cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-----cCe
Q 003579          425 TAVKACTISA-CGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGD  497 (809)
Q Consensus       425 ~~v~~v~~s~-~g~~l~~g~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~  497 (809)
                      .....++.+| .+..++++-.-| ...+||.+++.....+.....+-+++|      -+|++||++|++.-.     .|.
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~   78 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV   78 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence            4556778888 567777777776 567899999999888775554445555      479999999998753     488


Q ss_pred             EEEEECC-CCceeeeeecC-CCeEEEEEeeCCCEEEEEeC------------------CCeEEEEEcCCCeEEEE--E--
Q 003579          498 IKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD------------------DLVIRLFDVVALRMVRK--F--  553 (809)
Q Consensus       498 i~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~------------------d~~I~v~d~~~~~~~~~--~--  553 (809)
                      |-|||.. +-+.+.++..+ -....+.+.||++.|+++..                  +-++...|..+|+++.+  +  
T Consensus        79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence            9999999 55666666554 45677889999988887632                  23567778889988877  4  


Q ss_pred             ecCCCCeeeEEECCCCCEEEEEeCCC-------eEEEEEcCCccEEEEee--------eCcceEEEEEcCCCCeEEEEEe
Q 003579          554 EGHTDRITDFCFSEDGKWLLSSGMDG-------SLRIWDVILARQIDAIH--------VDVSITALSLSPNMDVLATAHV  618 (809)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s~D~-------~I~vwd~~~~~~i~~~~--------~~~~v~~l~~spdg~~lat~~~  618 (809)
                      .-|...|..+++.++|..++..-..|       .|.+++-  ++.+..+.        ....+-+|+++++|.+++.++-
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence            33788999999999998666543332       2334443  33333333        2345999999999999999888


Q ss_pred             CCCeEEEeecC
Q 003579          619 DQNGVYLWVNR  629 (809)
Q Consensus       619 d~~~i~lW~~~  629 (809)
                      -++.+.+|+..
T Consensus       237 rGg~~~~~d~~  247 (305)
T PF07433_consen  237 RGGRVAVWDAA  247 (305)
T ss_pred             CCCEEEEEECC
Confidence            88889999764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=2e-06  Score=92.49  Aligned_cols=112  Identities=21%  Similarity=0.313  Sum_probs=89.7

Q ss_pred             EEEEEEcCCCCEEEEEeC----CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee
Q 003579          184 ISSCVSSPALDVVAVGCS----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (809)
Q Consensus       184 I~~l~~sp~~~~la~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~  259 (809)
                      -+-..|+|...++|+++-    .|.|.||- ++|++-.....  .-.+++++|+|..- +|+.|-.-|.+.+|...+.+.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHH-HHhhccccceeEEEecCCcee
Confidence            344578999999998864    48888885 56665444332  23578899999876 899999999999999877666


Q ss_pred             eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579          260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~  300 (809)
                      ..... .|..+|..+.|+++|..|+++..-|.+.+|.++..
T Consensus        94 htv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   94 HTVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             eeecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            55554 89999999999999999999999999999988754

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.51  E-value=0.00012  Score=81.04  Aligned_cols=194  Identities=13%  Similarity=0.166  Sum_probs=113.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCC------CEEE--EEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccC
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS------SISS--CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM  223 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~------~I~~--l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~  223 (809)
                      +++++++.++.|.-.|.++|+.+.++.....      .+..  +... ++..+++++.+|.|.-+|.++|+.+-++....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            5788898999999999999999988764332      0100  1111 22688889999999999999999998877542


Q ss_pred             CC----cE-EEEEEecCCCCEEEEEc---------CCCcEEEEECCCceeeeeeeccccc-------------------c
Q 003579          224 RG----AV-TALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAHDN-------------------A  270 (809)
Q Consensus       224 ~~----~V-~~l~fs~dg~~~lasg~---------~dg~I~iwdl~~~~~~~~~~~~h~~-------------------~  270 (809)
                      ..    .+ .+..+. ++  +++.++         .+|.+..+|.++|+.+......+..                   .
T Consensus       141 ~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         141 QVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            11    01 112222 23  455554         3678999999999988877632211                   0


Q ss_pred             e-EEEEEecCCCEEEEEcCCC------------------cEEEEEeeCCCCCceeEEeccCCCC----CCeeEEEe----
Q 003579          271 I-ISLHFFANEPVLMSASADN------------------SIKMWIFDTTDGDPRLLRFRSGHSA----PPLCIRFY----  323 (809)
Q Consensus       271 V-~~l~~~~~~~~l~s~s~d~------------------~i~vw~~~~~~~~~~~~~~~~~h~~----~v~~i~~~----  323 (809)
                      + .+..+.+.+..++.++.++                  .|.-.|..+.  ...-......|..    ......+.    
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG--~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG--KVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC--CEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence            1 1234444556777776555                  4554444433  2222221122211    00001111    


Q ss_pred             cCCC---EEEEEECCCCEEEEEeeeccccee
Q 003579          324 ANGR---HILSAGQDRAFRLFSVIQDQQSRE  351 (809)
Q Consensus       324 ~~~~---~l~s~~~dg~i~~wd~~~~~~~~~  351 (809)
                      -++.   .++.++.+|.+..+|..+++..-+
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            1332   567777889899888887765443

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.50  E-value=0.00043  Score=76.62  Aligned_cols=176  Identities=16%  Similarity=0.147  Sum_probs=110.8

Q ss_pred             EEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeeeeeCccccc--ccCccccE-EEEEEcCCCC
Q 003579          429 ACTISACGNFAVLGTAGG------------------WIERFNLQSGISRGSYLDMSERS--NYAHNGEV-VGVACDSTNT  487 (809)
Q Consensus       429 ~v~~s~~g~~l~~g~~~g------------------~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v-~~l~~~~~~~  487 (809)
                      +.++.+.+..+++++.++                  .+.-+|..+|+.+..+.......  ......++ ..+. .-++.
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~  299 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGK  299 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCC
Confidence            345666778888888765                  79999999999998875311100  00111111 1111 11232


Q ss_pred             ---EEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEE------------------eCCCeEEEEEcCC
Q 003579          488 ---LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV------------------ADDLVIRLFDVVA  546 (809)
Q Consensus       488 ---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~------------------~~d~~I~v~d~~~  546 (809)
                         .++.++.+|.+...|..+|+.+.......  ..++.+|  ..+.++                  ..+|.+.-+|..+
T Consensus       300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t  375 (488)
T cd00216         300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT  375 (488)
T ss_pred             eeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence               57778889999999999999987765431  1223333  333332                  2367899999999


Q ss_pred             CeEEEEEecCC--------CCe--eeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEE--EEEcCCCC
Q 003579          547 LRMVRKFEGHT--------DRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD  611 (809)
Q Consensus       547 ~~~~~~~~~h~--------~~I--~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~--l~~spdg~  611 (809)
                      ++.+-+.....        .+.  ..+..  .+..|+.++.||.|+.+|..+|+.+-.++....+.+  +.+..+|+
T Consensus       376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~  450 (488)
T cd00216         376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK  450 (488)
T ss_pred             CcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence            98877765331        111  11222  456888889999999999999999998887665432  23344554

The alignment model contains an 8-bladed beta-propeller.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=4.9e-07  Score=87.43  Aligned_cols=123  Identities=15%  Similarity=0.223  Sum_probs=99.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeeeeCcccccccCccccEEEEEEcC-CCCEEEEEeCcCeE
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGI-----SRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDI  498 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~-----~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i  498 (809)
                      +.|-++.|...++.+..|+.+|.|..+|++.+.     ....+         -|...|+++..-. ++++|++.+.+|+|
T Consensus       253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl---------yh~Ssvtslq~Lq~s~q~LmaS~M~gki  323 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL---------YHDSSVTSLQILQFSQQKLMASDMTGKI  323 (425)
T ss_pred             hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE---------EcCcchhhhhhhccccceEeeccCcCce
Confidence            567777788889999999999999999998762     22222         6899999999877 78999999999999


Q ss_pred             EEEECCCCce---eeeeecC---CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 003579          499 KVWDFKGRDL---KSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  556 (809)
Q Consensus       499 ~iwd~~~~~~---~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h  556 (809)
                      ++||.+--++   +.+++.+   ..-.-+..++....++++++|...|||.++.+.++.++.-.
T Consensus       324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            9999986666   6677665   23334456677889999999999999999999999887643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.49  E-value=0.0019  Score=73.77  Aligned_cols=277  Identities=12%  Similarity=0.105  Sum_probs=167.3

Q ss_pred             CCCCCCcEEEEEeCCeEEEEECCe-----EEEEEC---Ce---eEEEEc--cccccEEEEEE--eCCEEEEEeCCCcEEE
Q 003579           53 PQLPKKIRALASYRDYTFAAYGNH-----IAVVKR---AH---QVATWS--RHSAKVNLLLL--FGEHILSIDIDGNMFI  117 (809)
Q Consensus        53 ~~~~~~I~~la~~~~~~~~a~g~~-----i~vw~~---~~---~~~~~~--~h~~~V~~l~~--~g~~l~s~~~dg~i~v  117 (809)
                      ..++..-.+...+|...++|++..     +..+..   ++   ....+.  .-.+.|.++.+  ++..++.+..+|.|.+
T Consensus        15 ~~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iil   94 (1265)
T KOG1920|consen   15 VAGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIIL   94 (1265)
T ss_pred             cCCCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEE
Confidence            345555667788888888888843     333322   22   111121  22358888887  6788888889999998


Q ss_pred             EEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeC----CC-------------------CceE
Q 003579          118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI----ST-------------------KKKL  174 (809)
Q Consensus       118 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~----~~-------------------~~~~  174 (809)
                      -|.++...     .....-...+..+.++|+.  ..++..+..+++.+-.-    -.                   |+.-
T Consensus        95 vd~et~~~-----eivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrke  167 (1265)
T KOG1920|consen   95 VDPETLEL-----EIVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKE  167 (1265)
T ss_pred             Ecccccce-----eeeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccc
Confidence            87776544     1222234556677799999  78888888887776532    01                   1111


Q ss_pred             EEEcCC---------------------CCCEEEEEEcCCCCEEEEE-----eCCCeEEEEEeeCCeEEEEEeccCCCcEE
Q 003579          175 YEFKGW---------------------GSSISSCVSSPALDVVAVG-----CSDGKIHVHNVRYDEELVTFTHSMRGAVT  228 (809)
Q Consensus       175 ~~~~~~---------------------~~~I~~l~~sp~~~~la~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~V~  228 (809)
                      ..|.|.                     .+.=+++.|--||+++|+.     .....|++||-+ | .+........+.-.
T Consensus       168 Tqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~  245 (1265)
T KOG1920|consen  168 TQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQH  245 (1265)
T ss_pred             eeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCccccccc
Confidence            122211                     1122458899999999984     223789999976 3 33333333245567


Q ss_pred             EEEEecCCCCEEEEEc---CCCcEEEEECCCc---eeeeeeecccccceEEEEEecCCCEEEE---EcCCCcEEEEEeeC
Q 003579          229 ALAFSSDGQPLLASGA---SSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMS---ASADNSIKMWIFDT  299 (809)
Q Consensus       229 ~l~fs~dg~~~lasg~---~dg~I~iwdl~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s---~s~d~~i~vw~~~~  299 (809)
                      +++|.|.|. ++|+-.   +++.|.++.-+.-   ....... .....|..++|+.++..|++   ......|++|-+. 
T Consensus       246 ~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~-  322 (1265)
T KOG1920|consen  246 SLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG-  322 (1265)
T ss_pred             ceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCceeeeecccccceEEEEEec-
Confidence            999999998 666543   5668999984332   2222222 23344999999999998887   4444559999543 


Q ss_pred             CCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEee
Q 003579          300 TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~  344 (809)
                       +-.+-+...+.-.....  +.|+| ....+..-..+|...+++..
T Consensus       323 -NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  323 -NYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             -CeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence             33333333332222222  78888 33344444467776666653

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.47  E-value=0.0052  Score=68.76  Aligned_cols=560  Identities=13%  Similarity=0.105  Sum_probs=278.2

Q ss_pred             CCeEEEEEEc---CCeEEEEEcCcc-EEEEec--CCCCCCcEEEE--Ee---CCeEEEEECCeEEEEECCeeEEE--Ecc
Q 003579           25 GTENFVTVSV---GKAFHIYNCAKL-NLVLVG--PQLPKKIRALA--SY---RDYTFAAYGNHIAVVKRAHQVAT--WSR   91 (809)
Q Consensus        25 ~~~~~i~~~~---~~~i~iwd~~~~-~~~~~~--~~~~~~I~~la--~~---~~~~~~a~g~~i~vw~~~~~~~~--~~~   91 (809)
                      +...+++++.   |+++++..-.=+ .-+...  ++ ...+..+.  ++   +++.+++.-+.=++...+.++..  ..+
T Consensus       368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~g  446 (1096)
T KOG1897|consen  368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPG  446 (1096)
T ss_pred             CCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccceEEEEEccceEEecccc
Confidence            3444555554   788988864432 111111  22 34444444  22   23667776666555555444333  334


Q ss_pred             ccccEEEEE---EeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeC
Q 003579           92 HSAKVNLLL---LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI  168 (809)
Q Consensus        92 h~~~V~~l~---~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~  168 (809)
                      -......+.   ..|+.|+=+. ...|++.+-+.  .    ...+....+.....+. .+.  ..+++++.++.+...++
T Consensus       447 f~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~~--~----~~~W~~p~~~ti~~~~-~n~--sqVvvA~~~~~l~y~~i  516 (1096)
T KOG1897|consen  447 FSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSAG--L----RSEWRPPGKITIGVVS-ANA--SQVVVAGGGLALFYLEI  516 (1096)
T ss_pred             ccccCceEEEEccCCceEEEEe-cccEEEEcchh--h----hhcccCCCceEEEEEe-ecc--eEEEEecCccEEEEEEe
Confidence            333333333   3577776665 55688877551  1    2233333333333332 222  35777777777777777


Q ss_pred             CCCceEEEE-cCCCCCEEEEEEcCCC------CEEEEEeCCCeEEEEEee-CCeEEEEEeccCC---CcEEEEEEecCCC
Q 003579          169 STKKKLYEF-KGWGSSISSCVSSPAL------DVVAVGCSDGKIHVHNVR-YDEELVTFTHSMR---GAVTALAFSSDGQ  237 (809)
Q Consensus       169 ~~~~~~~~~-~~~~~~I~~l~~sp~~------~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~~---~~V~~l~fs~dg~  237 (809)
                      ..+.+.... +.....|.|+.++|-+      +++|+|..+..+.+.-.. ....+........   ..|.-..|-.|..
T Consensus       517 ~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~  596 (1096)
T KOG1897|consen  517 EDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIH  596 (1096)
T ss_pred             eccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccce
Confidence            666522221 2336789999999853      389999887766555443 3333333322212   2455555655555


Q ss_pred             CEEEEEcCCCcEEEEEC--CCceeeeeee-cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579          238 PLLASGASSGVISIWNL--EKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (809)
Q Consensus       238 ~~lasg~~dg~I~iwdl--~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (809)
                       +|.++..||.+.-+.+  .++.....-+ .--..++.=-.|+..++.-+-+..|.-..+|..+..     +....- .-
T Consensus       597 -yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-----Lv~spl-s~  669 (1096)
T KOG1897|consen  597 -YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-----LVYSPL-SL  669 (1096)
T ss_pred             -EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-----EEEecc-ch
Confidence             8888899999876654  4443322221 012334544455554443333333454445532211     111110 00


Q ss_pred             CCCeeE-EEec--CCCEEEEEECCCCEEEEEeeeccc--ceecchhhHHHHHhhccchhhhhccCc-eeEEeeccccccc
Q 003579          315 APPLCI-RFYA--NGRHILSAGQDRAFRLFSVIQDQQ--SRELSQRHVAKRARKLKMKEEELKLKP-VIAFDCAEIRERD  388 (809)
Q Consensus       315 ~~v~~i-~~~~--~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~  388 (809)
                      ..+..+ .|+.  -...++++..+ .+++.-+..-+.  .+.++.+...+          .+...+ -..+.....|...
T Consensus       670 kev~~~c~f~s~a~~d~l~~~~~~-~l~i~tid~iqkl~irtvpl~~~pr----------rI~~q~~sl~~~v~s~r~e~  738 (1096)
T KOG1897|consen  670 KEVNHMCPFNSDAYPDSLASANGG-ALTIGTIDEIQKLHIRTVPLGESPR----------RICYQESSLTFGVLSNRIES  738 (1096)
T ss_pred             HHhhhhcccccccCCceEEEecCC-ceEEEEecchhhcceeeecCCCChh----------heEecccceEEEEEeccccc
Confidence            111111 1221  12245555433 455554432211  11122111111          111111 1111122222111


Q ss_pred             cceeEEeecCCceEEEEEeeeeeecce-eeecCCCCCCCeEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCC
Q 003579          389 WCNVVTCHMDTAQAYVWRLQNFVLGEH-ILRPCPENPTAVKACTISAC-GNFAVLGTA----------GGWIERFNLQSG  456 (809)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~----------~g~i~i~~~~~~  456 (809)
                      ......--..-..++++|-++...-.. .+.. ......+.++.+..| +.++++|+.          .|.|.+|....+
T Consensus       739 ~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~  817 (1096)
T KOG1897|consen  739 SAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL  817 (1096)
T ss_pred             chhhcCCcceEEEEEEecCCceeEEeeccccc-cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC
Confidence            111000011123344444444332111 1110 011134555567777 788888864          588888888774


Q ss_pred             ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceee-eeecCCCeEEEEEeeCCCEEEEEeC
Q 003579          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVAD  535 (809)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~  535 (809)
                      ........      ..-.+.+.++..- +|+++|  +-...|++|++.+.+.++ .-....++..+...-.+..+++|.-
T Consensus       818 ~~L~~v~e------~~v~Gav~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl  888 (1096)
T KOG1897|consen  818 NSLELVAE------TVVKGAVYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL  888 (1096)
T ss_pred             Cceeeeee------eeeccceeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec
Confidence            33333210      1223444444432 466655  445689999999884443 3445588889999999999999987


Q ss_pred             CCeEEEEEcC--CCeEEEEEe-cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC-------------------ccEEE
Q 003579          536 DLVIRLFDVV--ALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL-------------------ARQID  593 (809)
Q Consensus       536 d~~I~v~d~~--~~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~-------------------~~~i~  593 (809)
                      -+++.+.-.+  .+.....-+ -|...++++.+-.+..++. +..+|.+.+-..++                   |+.+.
T Consensus       889 m~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylg-ae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn  967 (1096)
T KOG1897|consen  889 MRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLG-AENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVN  967 (1096)
T ss_pred             cceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEe-ecccccEEEEEecCCCCchhhhhcccceeeEEecccee
Confidence            7777665443  333433322 3667788888876655544 55667777665432                   33444


Q ss_pred             EeeeCcceEE--EEEcCCCCeEEEEEeCCCeEEE
Q 003579          594 AIHVDVSITA--LSLSPNMDVLATAHVDQNGVYL  625 (809)
Q Consensus       594 ~~~~~~~v~~--l~~spdg~~lat~~~d~~~i~l  625 (809)
                      .|++..-|..  -..+|-+.-+..|..+| +|-+
T Consensus       968 ~f~hg~lv~~~~~s~~~~~~~vlfgTv~G-sIG~ 1000 (1096)
T KOG1897|consen  968 KFRHGSLVMQLGDSMIPLEPKVLFGTVNG-SIGI 1000 (1096)
T ss_pred             eeeecceEeeccccccCCCCcEEEEEccc-eEEE
Confidence            4444333444  24455555677777777 3543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.46  E-value=7.1e-06  Score=88.39  Aligned_cols=114  Identities=16%  Similarity=0.156  Sum_probs=86.0

Q ss_pred             cEEEEEEecCCCCEEEEEc----CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC
Q 003579          226 AVTALAFSSDGQPLLASGA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (809)
Q Consensus       226 ~V~~l~fs~dg~~~lasg~----~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~  301 (809)
                      .-+-.+|+|... ++|+++    ..|.|.||- ++|++.....  ..-.+++++|+|..-.|+.|=.-|.+.+|.-... 
T Consensus        17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-   91 (1416)
T KOG3617|consen   17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-   91 (1416)
T ss_pred             cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCc-
Confidence            344567888777 888776    468888885 5565443332  2223567999999989999988999999965543 


Q ss_pred             CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (809)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~  347 (809)
                         ..-.....|..++..+.|+++|..++++..-|.+.+|....-.
T Consensus        92 ---e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   92 ---ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             ---eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence               3334456799999999999999999999999999999886443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.46  E-value=2.2e-05  Score=83.72  Aligned_cols=197  Identities=19%  Similarity=0.247  Sum_probs=124.4

Q ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe-----E
Q 003579          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY-EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-----E  215 (809)
Q Consensus       142 ~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~-----~  215 (809)
                      -.++....  ++++.|+.-|.+++|+-..++... ...+-.+.+..+..+++..++|.|+..|.|.++-+..+.     .
T Consensus        38 lTc~dst~--~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   38 LTCVDATE--EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEEeecCC--ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            33444455  789999999999999966555432 233345667778899999999999999999999887543     2


Q ss_pred             EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc----eeeeeeecccccceEEEEEecCCCEEEEEcCCCc
Q 003579          216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNS  291 (809)
Q Consensus       216 ~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~  291 (809)
                      +......|+..|++++|++|+. .+.+|...|.|..-.+...    .....+. .-.+.|..+.+.. +.+|++... ..
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q-~~LLVStl~-r~  191 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQ-SYLLVSTLT-RC  191 (726)
T ss_pred             eccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeeccc-ceehHhhhh-hh
Confidence            2233334578999999999999 8999999999999988872    1111222 3457788887763 334444332 22


Q ss_pred             EEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC----CCEEEEEECCCCEEEEEeeeccc
Q 003579          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQ  348 (809)
Q Consensus       292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~dg~i~~wd~~~~~~  348 (809)
                       .+++.+..+  .+.+-......-.-...+|.|.    .+-.+.|+.-| .|+|...-...
T Consensus       192 -~Lc~tE~et--i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~  248 (726)
T KOG3621|consen  192 -ILCQTEAET--ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGE  248 (726)
T ss_pred             -heeecchhH--HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeeccee
Confidence             233333221  1111111111112345566663    45566777776 68888765443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.45  E-value=6.3e-07  Score=60.17  Aligned_cols=39  Identities=41%  Similarity=0.536  Sum_probs=37.2

Q ss_pred             CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (809)
Q Consensus       171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd  209 (809)
                      +++++++.+|.+.|++++|+|++++|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            468899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=2.5e-07  Score=99.66  Aligned_cols=169  Identities=18%  Similarity=0.172  Sum_probs=119.0

Q ss_pred             ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC-cEE
Q 003579          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG-VIS  250 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg-~I~  250 (809)
                      +...+|..|....+|++|+-+.+.|++|+..|.|+++|+.+|........| ...|+-+.=+.||...|.+++... ...
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchHH
Confidence            455667888999999999999999999999999999999999999888887 889999999999984444444333 678


Q ss_pred             EEECCC-ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579          251 IWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (809)
Q Consensus       251 iwdl~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (809)
                      +|++.+ +...+.+.     .-.++.|+.....-+.|..-....+||+.+.......+.-..+.+..-++..|+|+...+
T Consensus      1171 LW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             HhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            999865 23333333     456778877544334444445678998887653322222222333334788899988777


Q ss_pred             EEEECCCCEEEEEeeeccccee
Q 003579          330 LSAGQDRAFRLFSVIQDQQSRE  351 (809)
Q Consensus       330 ~s~~~dg~i~~wd~~~~~~~~~  351 (809)
                      +   .||  .+||++..+.+..
T Consensus      1246 l---ndG--vLWDvR~~~aIh~ 1262 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHR 1262 (1516)
T ss_pred             e---eCc--eeeeeccHHHHhh
Confidence            6   355  4799876644433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=7.2e-05  Score=81.57  Aligned_cols=197  Identities=13%  Similarity=0.225  Sum_probs=135.3

Q ss_pred             cEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC-EEEEEEcCCCCEEEEEeCCC-----eEEEEEeeCC-
Q 003579          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSPALDVVAVGCSDG-----KIHVHNVRYD-  213 (809)
Q Consensus       141 ~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~-I~~l~~sp~~~~la~g~~dg-----~i~iwd~~~~-  213 (809)
                      ...++++.+  ..++.|+.+|.|.+.| +..+.++.|+.+... |..+-...+..+|++.+.|+     .++||+++.- 
T Consensus        27 ~isc~~s~~--~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISCCSSST--GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeEEcCCC--ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            455677787  7899999999999998 466677888888777 55554444446777766653     5999999733 


Q ss_pred             -----eEE---EEEe--cc-CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECC--Ccee-eeeeecccccceEEEEEecC
Q 003579          214 -----EEL---VTFT--HS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLE--KRRL-QSVIREAHDNAIISLHFFAN  279 (809)
Q Consensus       214 -----~~~---~~~~--~~-~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~--~~~~-~~~~~~~h~~~V~~l~~~~~  279 (809)
                           .++   +.+.  .+ ...++.+++.+.+-+ .+|+|-.+|.|..+.-+  ..+- ...+.....++|+++.+..+
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                 233   1122  11 246899999999877 89999999999988422  1111 12222234579999999999


Q ss_pred             CCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeee
Q 003579          280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       280 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  345 (809)
                      +..++-+..-..|.+|.+...+   ..+.....|..++.|..+++....++.++.. .+.+|+...
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~  244 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG  244 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence            8863333344679999887433   2345567888899999999866556666544 488888643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.43  E-value=0.00014  Score=77.12  Aligned_cols=304  Identities=10%  Similarity=0.050  Sum_probs=154.1

Q ss_pred             cCCCCEEEEEe---------CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee
Q 003579          190 SPALDVVAVGC---------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (809)
Q Consensus       190 sp~~~~la~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~  260 (809)
                      |||+++++...         ..+.+.|+|+.+++.......  ...+....|+|+|+ .+|... ++.|.++++.++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeE
Confidence            68888888742         246789999998765444333  46789999999999 555544 678999998887554


Q ss_pred             eeeeccc----------------ccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEe
Q 003579          261 SVIREAH----------------DNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (809)
Q Consensus       261 ~~~~~~h----------------~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (809)
                      +....+-                -+.-.++-|+||++.|+.... +..|+.+.+........       -...+..+.+-
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP  149 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP  149 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccC
Confidence            4333220                012245677787776666543 34444443221111000       00012222321


Q ss_pred             cCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEE
Q 003579          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (809)
Q Consensus       324 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (809)
                      --|.-....    .+.++++.+++... +....                                               
T Consensus       150 k~G~~np~v----~l~v~~~~~~~~~~-~~~~~-----------------------------------------------  177 (353)
T PF00930_consen  150 KAGDPNPRV----SLFVVDLASGKTTE-LDPPN-----------------------------------------------  177 (353)
T ss_dssp             BTTS---EE----EEEEEESSSTCCCE-E---H-----------------------------------------------
T ss_pred             CCCCcCCce----EEEEEECCCCcEEE-eeecc-----------------------------------------------
Confidence            122111111    24455554333211 00000                                               


Q ss_pred             EEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeeeeCcccccccCccccEE
Q 003579          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (809)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (809)
                                     ........+..+.|+++++.+++...+     -.+.++|..++..........    .+.-..-.
T Consensus       178 ---------------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~  238 (353)
T PF00930_consen  178 ---------------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS----DGWVDVYD  238 (353)
T ss_dssp             ---------------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES----SSSSSSSS
T ss_pred             ---------------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC----Ccceeeec
Confidence                           000112567788888888844443322     256677877776655443111    11111222


Q ss_pred             EEEEc-CCC-CEEEEEeCcCe--EEEEECCCCceeeeeecCCCeEE-EEEeeCCCEEEEE-eC----CCeEEEEEcCCCe
Q 003579          479 GVACD-STN-TLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLLATV-AD----DLVIRLFDVVALR  548 (809)
Q Consensus       479 ~l~~~-~~~-~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~-~~~s~~~~~la~~-~~----d~~I~v~d~~~~~  548 (809)
                      ...+. +++ .++.....||.  |.+++..++.........-.|.. +.+.++++.|... ..    ...++..++..+.
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            44443 555 44445556665  55556666665443344455644 6778887766544 33    2367777777334


Q ss_pred             EEEEEecCCCCeeeEEECCCCCEEEEE
Q 003579          549 MVRKFEGHTDRITDFCFSEDGKWLLSS  575 (809)
Q Consensus       549 ~~~~~~~h~~~I~~l~fspdg~~l~s~  575 (809)
                      .+..+....+.-..+.|||+|++++-.
T Consensus       319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  319 EPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             CeEeccCCCCCceEEEECCCCCEEEEE
Confidence            455555443333689999999988743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.6e-05  Score=78.96  Aligned_cols=93  Identities=14%  Similarity=0.103  Sum_probs=71.6

Q ss_pred             EEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC-
Q 003579          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-  326 (809)
Q Consensus       249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-  326 (809)
                      +++.+..+-+....+. .|...|..++|+|..+ ++..++.++.|++.|+.+..    .......| .++.+++|.-|. 
T Consensus       175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCc
Confidence            5666655555555444 7888999999999877 78889999999999998763    44444455 789999998854 


Q ss_pred             CEEEEEECCCCEEEEEeeecc
Q 003579          327 RHILSAGQDRAFRLFSVIQDQ  347 (809)
Q Consensus       327 ~~l~s~~~dg~i~~wd~~~~~  347 (809)
                      ++|..|-..|.|.+||++..+
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ceeEEeccCceEEEEEccCCC
Confidence            566677788999999987654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.43  E-value=8.8e-05  Score=78.29  Aligned_cols=202  Identities=13%  Similarity=0.117  Sum_probs=116.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC-----CC---CEEEEEeCc
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TN---TLMISAGYH  495 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~---~~l~s~~~d  495 (809)
                      .++|++++.| +=-|+++|+.+|.+.+.|++....+..-..............++++.|.-     |+   -.+++|...
T Consensus        86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            4899999997 56799999999999999998777665532111111123345677887752     33   478888899


Q ss_pred             CeEEEEECCC---Cce----eeee-ecCCCeEEEE-EeeCC--------------------CEEEEEeCCCeEEEEEcCC
Q 003579          496 GDIKVWDFKG---RDL----KSRW-EVGCSLVKIV-YHRVN--------------------GLLATVADDLVIRLFDVVA  546 (809)
Q Consensus       496 g~i~iwd~~~---~~~----~~~~-~~~~~i~~~~-~s~~~--------------------~~la~~~~d~~I~v~d~~~  546 (809)
                      |.+.+|.+.-   +..    .... ...+++..+. ++.+.                    .-+++.+.+..+|++...+
T Consensus       165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~  244 (395)
T PF08596_consen  165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK  244 (395)
T ss_dssp             SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred             CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence            9999998751   211    1111 2335555544 32221                    1244555678899999988


Q ss_pred             CeEEEEEecCCCCeeeEEEC-----CCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-----eEEEEEcCCCCeEEEE
Q 003579          547 LRMVRKFEGHTDRITDFCFS-----EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-----ITALSLSPNMDVLATA  616 (809)
Q Consensus       547 ~~~~~~~~~h~~~I~~l~fs-----pdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-----v~~l~~spdg~~lat~  616 (809)
                      .+...+.....-....+.+-     ..+..|++-..+|.|+++.++.-+.+..+..+..     +....++++|+.++-.
T Consensus       245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~  324 (395)
T PF08596_consen  245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWT  324 (395)
T ss_dssp             --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred             CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEe
Confidence            87766555332233344552     3566788888999999999999999988876432     6677889999988887


Q ss_pred             EeCCCeEEEeec
Q 003579          617 HVDQNGVYLWVN  628 (809)
Q Consensus       617 ~~d~~~i~lW~~  628 (809)
                      +...  +.++.+
T Consensus       325 gpsE--~~l~sv  334 (395)
T PF08596_consen  325 GPSE--IQLFSV  334 (395)
T ss_dssp             SSSE--EEEEEE
T ss_pred             Cccc--EEEEEE
Confidence            6653  555543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.40  E-value=5.3e-06  Score=90.41  Aligned_cols=183  Identities=14%  Similarity=0.187  Sum_probs=137.6

Q ss_pred             eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCC
Q 003579          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG  181 (809)
Q Consensus       102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~  181 (809)
                      .+..++.|+-...+...|+.+.+.    .+........  ..++--++  +.+.+|...|+|.+-|.++.+.++++..|.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e----~r~~~v~a~~--v~imR~Nn--r~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKE----TRTTNVSASG--VTIMRYNN--RNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             CCcceeecchhhheeeeeccccee----eeeeeccCCc--eEEEEecC--cEEEeecccceEEeecCCcCceeeeeeccc
Confidence            467788888888899999988776    4444433322  22233344  578899999999999999999999999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeC---------CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579          182 SSISSCVSSPALDVVAVGCS---------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (809)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw  252 (809)
                      +.|..+..  .|+.|++++.         |.-|+|||++.-+.+.-+..+ .+ ..-+.|.|.=...+++.+..|...+-
T Consensus       218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~-P~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YG-PQFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cC-chhhhhcccccceEEEEecccceeec
Confidence            99987655  4778888765         345899999987776666553 23 36678888766678999999999999


Q ss_pred             E---CCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579          253 N---LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (809)
Q Consensus       253 d---l~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~  296 (809)
                      |   +.+...-........+.+.++.+++++..++.+..+|.|.+|.
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            9   4443222222224456699999999999999999999999996

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.37  E-value=0.0017  Score=71.99  Aligned_cols=109  Identities=12%  Similarity=0.143  Sum_probs=73.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCC-CCEE---E-------EEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSIS---S-------CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~I~---~-------l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (809)
                      ++|++++.++.|.-.|.++|+.+.++.... ..+.   +       +++  .+..+++++.|+.+.-.|.++|+.+-...
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            578888889999999999999998876421 1111   1       111  23568888899999999999999987765


Q ss_pred             ccCCC---cEEEEEEecCCCCEEEEEc------CCCcEEEEECCCceeeeeee
Q 003579          221 HSMRG---AVTALAFSSDGQPLLASGA------SSGVISIWNLEKRRLQSVIR  264 (809)
Q Consensus       221 ~~~~~---~V~~l~fs~dg~~~lasg~------~dg~I~iwdl~~~~~~~~~~  264 (809)
                      .....   .+++--..-++.  ++++.      .+|.|.-+|.++|+.+....
T Consensus       148 ~~~~~~~~~~tssP~v~~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKGK--VITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             cccccccccccCCcEEECCE--EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            32111   122211112443  44443      26899999999999887765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.33  E-value=0.00052  Score=78.03  Aligned_cols=242  Identities=14%  Similarity=0.183  Sum_probs=141.9

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      .+.|.++.|..++. -++.+...|.|.+-|.++......-  .-.++|.+++|+||+..++..+.++++.+-..+-.   
T Consensus        68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~---  141 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPDEELLALITGRQTLLFMTKDFE---  141 (1265)
T ss_pred             CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCCCcEEEEEeCCcEEEEEecccc---
Confidence            35899999999988 6677788999999988877543222  35678999999999999999888887776533211   


Q ss_pred             ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecc
Q 003579          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (809)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  383 (809)
                        ++....-|      ..-.+.++ .+..|..+.=.-+.-..+++...           .   ....             
T Consensus       142 --~i~E~~L~------~d~~~~sk-~v~VGwGrkeTqfrgs~gr~~~~-----------~---~~~~-------------  185 (1265)
T KOG1920|consen  142 --PIAEKPLD------ADDERKSK-FVNVGWGRKETQFRGSEGRQAAR-----------Q---KIEK-------------  185 (1265)
T ss_pred             --chhccccc------cccccccc-cceecccccceeeecchhhhccc-----------c---cccc-------------
Confidence              11100000      01111222 22222222111111100000000           0   0000             


Q ss_pred             ccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCce
Q 003579          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGIS  458 (809)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-----~~~g~i~i~~~~~~~~  458 (809)
                                                    ...+. .......-++++|--||.++++.     .....|++||-. |..
T Consensus       186 ------------------------------ek~~~-~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L  233 (1265)
T KOG1920|consen  186 ------------------------------EKALE-QIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL  233 (1265)
T ss_pred             ------------------------------ccccc-chhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh
Confidence                                          00000 00111445678999999999883     333689999987 433


Q ss_pred             eeeeeCcccccccCccccEEEEEEcCCCCEEEEEe---CcCeEEEEECCC---CceeeeeecC-CCeEEEEEeeCCCEEE
Q 003579          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKG---RDLKSRWEVG-CSLVKIVYHRVNGLLA  531 (809)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~dg~i~iwd~~~---~~~~~~~~~~-~~i~~~~~s~~~~~la  531 (809)
                      ...-.        ...+.-.+++|-|.|.++++-.   .|+.|.++.-+.   +...-.+... .++..++|+.++..||
T Consensus       234 ns~se--------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  234 NSTSE--------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             hcccC--------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence            22211        2334456899999999888765   566799987442   2222223333 3489999999999999


Q ss_pred             E---EeCCCeEEEEEcCCC
Q 003579          532 T---VADDLVIRLFDVVAL  547 (809)
Q Consensus       532 ~---~~~d~~I~v~d~~~~  547 (809)
                      +   ......|++|-+.+-
T Consensus       306 v~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecccccceEEEEEecCe
Confidence            8   455566999987764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.33  E-value=0.00041  Score=73.46  Aligned_cols=287  Identities=11%  Similarity=0.079  Sum_probs=157.0

Q ss_pred             CCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccC-------C-----
Q 003579          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG-------H-----  313 (809)
Q Consensus       246 dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~-------h-----  313 (809)
                      .+.+.++|+++++...... . ...+....|+|+|+.++... ++.|.+++....  ....+.. .|       -     
T Consensus        22 ~~~y~i~d~~~~~~~~l~~-~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~~~lT~-dg~~~i~nG~~dwvy   95 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTP-P-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QETQLTT-DGEPGIYNGVPDWVY   95 (353)
T ss_dssp             EEEEEEEETTTTEEEESS--E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EEEESES---TTTEEESB--HHH
T ss_pred             ceeEEEEecCCCceEECcC-C-ccccccceeecCCCeeEEEe-cCceEEEECCCC--CeEEecc-ccceeEEcCccceec
Confidence            4679999999987766554 2 67889999999999988886 566777744332  1111111 11       0     


Q ss_pred             ----CCCCeeEEEecCCCEEEEEEC-CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccc
Q 003579          314 ----SAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (809)
Q Consensus       314 ----~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  388 (809)
                          -+.-..+.|+|||++|+.... +..+..+.+........                    ..               
T Consensus        96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------------------~y---------------  140 (353)
T PF00930_consen   96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------------------QY---------------  140 (353)
T ss_dssp             HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--------------------SS---------------
T ss_pred             cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--------------------cC---------------
Confidence                123467889999999987654 45566555433211100                    00               


Q ss_pred             cceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeeeCcc
Q 003579          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMS  466 (809)
Q Consensus       389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~  466 (809)
                                                          ..+..+.+-.      .|..+-  .+.++++.+++....-..  
T Consensus       141 ------------------------------------p~~~~~~YPk------~G~~np~v~l~v~~~~~~~~~~~~~~--  176 (353)
T PF00930_consen  141 ------------------------------------PEVESIRYPK------AGDPNPRVSLFVVDLASGKTTELDPP--  176 (353)
T ss_dssp             -------------------------------------EEEEEE--B------TTS---EEEEEEEESSSTCCCEE-----
T ss_pred             ------------------------------------CcccccccCC------CCCcCCceEEEEEECCCCcEEEeeec--
Confidence                                                0000111000      001111  356677777765421110  


Q ss_pred             cccccCccccEEEEEEcCCCCEEEEEe--Cc---CeEEEEECCCCceeeeeec--C---CCeEEEEEe-eCCC-EEEEEe
Q 003579          467 ERSNYAHNGEVVGVACDSTNTLMISAG--YH---GDIKVWDFKGRDLKSRWEV--G---CSLVKIVYH-RVNG-LLATVA  534 (809)
Q Consensus       467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~--~d---g~i~iwd~~~~~~~~~~~~--~---~~i~~~~~s-~~~~-~la~~~  534 (809)
                       .....-...+..+.|.++++.++..-  .+   ..+.+.|..+++.......  .   .......+. +++. ++....
T Consensus       177 -~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~  255 (353)
T PF00930_consen  177 -NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE  255 (353)
T ss_dssp             -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred             -cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence             00013356788999999998444433  22   2466778877655433322  2   223355554 5554 555555


Q ss_pred             CCC--eEEEEEcCCCeEEEEEecCCCCeee-EEECCCCCEEE-EEeCC----CeEEEEEcCCccEEEEeeeCcce-EEEE
Q 003579          535 DDL--VIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKWLL-SSGMD----GSLRIWDVILARQIDAIHVDVSI-TALS  605 (809)
Q Consensus       535 ~d~--~I~v~d~~~~~~~~~~~~h~~~I~~-l~fspdg~~l~-s~s~D----~~I~vwd~~~~~~i~~~~~~~~v-~~l~  605 (809)
                      .+|  .|++++..++. .+.+....-.|+. +.++++++.|. +|..+    ..|..-++..+..+..+...... ..+.
T Consensus       256 ~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~  334 (353)
T PF00930_consen  256 RDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS  334 (353)
T ss_dssp             TTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred             cCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence            666  45566666665 4455555566755 67888877665 55542    35666677734555666555544 4999


Q ss_pred             EcCCCCeEEEEEeC
Q 003579          606 LSPNMDVLATAHVD  619 (809)
Q Consensus       606 ~spdg~~lat~~~d  619 (809)
                      |||+|++++-.+..
T Consensus       335 ~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  335 FSPDGKYYVDTYSG  348 (353)
T ss_dssp             E-TTSSEEEEEEES
T ss_pred             ECCCCCEEEEEEcC
Confidence            99999999877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00018  Score=78.66  Aligned_cols=207  Identities=14%  Similarity=0.161  Sum_probs=137.2

Q ss_pred             EecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccc-eEEEEEecCCCEEEEEcCCCc-----EEEEEeeCCCC-C-
Q 003579          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-IISLHFFANEPVLMSASADNS-----IKMWIFDTTDG-D-  303 (809)
Q Consensus       232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~d~~-----i~vw~~~~~~~-~-  303 (809)
                      |++.+. .++.|+.+|.|.+.+- .-+.+..++ ++... |..+....+..+|++.+.|+.     +++|+++..++ . 
T Consensus        31 ~~s~~~-~vvigt~~G~V~~Ln~-s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   31 CSSSTG-SVVIGTADGRVVILNS-SFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EcCCCc-eEEEeeccccEEEecc-cceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            455565 8999999999988873 345556666 67666 566655556678999887754     89999987632 2 


Q ss_pred             ceeE--EeccC-----CCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579          304 PRLL--RFRSG-----HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (809)
Q Consensus       304 ~~~~--~~~~~-----h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (809)
                      |.++  .....     ...|+.+++.+.+-+.++.|-.+|.|..+.-.   ..+....                      
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs----------------------  162 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS----------------------  162 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc----------------------
Confidence            4444  11112     35578899999998899999999988876421   1110000                      


Q ss_pred             eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003579          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (809)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~  456 (809)
                                                             ..........+|+.+++..++..++.......|.+|.+...
T Consensus       163 ---------------------------------------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  163 ---------------------------------------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             ---------------------------------------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence                                                   00001122379999999999988555556677999999844


Q ss_pred             ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee
Q 003579          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE  513 (809)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  513 (809)
                      .......       ..|...+.|..+++....+++++. ..+.+|+....++...+.
T Consensus       204 ~p~~~~l-------d~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  204 TPSLKVL-------DNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             Ccceeee-------ccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            4222211       377888999999876654555554 579999988766655555

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.27  E-value=0.00013  Score=78.07  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=90.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee-
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-  259 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~-  259 (809)
                      ...|.--+++..+++++.|+..|.+.+|+-..++....-.....+.+..++.+++.. ++|.|+..|.|.++-+..+.. 
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCC
Confidence            344555566777899999999999999997766544433333356677777888776 899999999999998876522 


Q ss_pred             ----eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579          260 ----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (809)
Q Consensus       260 ----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~  299 (809)
                          +......|...|++++|++++..+++|...|.|..-.++.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                2222234778999999999999999999999999888776

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.25  E-value=2.5e-05  Score=85.37  Aligned_cols=184  Identities=15%  Similarity=0.188  Sum_probs=139.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~  231 (809)
                      ..++.|+-+..+..+|+++.+..+...-..+.|+-|+.  +++++.+|...|+|.+-|..+.+.+.++..| .+.|.++.
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH-s~siSDfD  224 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH-SGSISDFD  224 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc-ccceeeee
Confidence            44888889999999999999988887765666777765  4789999999999999999999999999987 78887766


Q ss_pred             EecCCCCEEEEEcC---------CCcEEEEECCCceeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCC
Q 003579          232 FSSDGQPLLASGAS---------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTD  301 (809)
Q Consensus       232 fs~dg~~~lasg~~---------dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~  301 (809)
                      ..  |+ +|++++.         |..|+|||++.-+.+.-+. -+.++ .-+.|.|.- ..++.++..|...+-|...-.
T Consensus       225 v~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  225 VQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             cc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcc-cccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence            54  66 7777764         4568999999887776665 34433 566777753 367777888888887632222


Q ss_pred             CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~  343 (809)
                      ..+.-..........+..+.++++|+.++.+..+|.|.+|.-
T Consensus       300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            111222223344455899999999999999999999999983

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=0.0039  Score=66.55  Aligned_cols=279  Identities=12%  Similarity=0.133  Sum_probs=182.1

Q ss_pred             EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC
Q 003579          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (809)
Q Consensus       249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~  327 (809)
                      +.+++..+.+....+. .+. ....+.+.+++..+.... ..+.+...  +....  ........-......+..++.+.
T Consensus        13 ~~v~~~~~~~~~~~~~-~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~--~~~~n--~~~~~~~~g~~~p~~i~v~~~~~   86 (381)
T COG3391          13 VSVINTGTNKVTAAIS-LGR-GPGGVAVNPDGTQVYVANSGSNDVSVI--DATSN--TVTQSLSVGGVYPAGVAVNPAGN   86 (381)
T ss_pred             eEEEeecccEEEEEee-cCC-CCceeEEcCccCEEEEEeecCceeeec--ccccc--eeeeeccCCCccccceeeCCCCC
Confidence            6666666666555554 222 566777788775444333 22233333  22211  11111111114456788888777


Q ss_pred             EEEE-EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEE
Q 003579          328 HILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (809)
Q Consensus       328 ~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  406 (809)
                      .++. ...+..+.+.|............                                                    
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~v----------------------------------------------------  114 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPV----------------------------------------------------  114 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeee----------------------------------------------------
Confidence            5544 44457788888544333222211                                                    


Q ss_pred             eeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEc
Q 003579          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (809)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  483 (809)
                                       ......++++++++.+.++..   ++.+.+.|..++........       +. .+ ..++++
T Consensus       115 -----------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-------G~-~P-~~~a~~  168 (381)
T COG3391         115 -----------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-------GN-TP-TGVAVD  168 (381)
T ss_pred             -----------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-------CC-Cc-ceEEEC
Confidence                             025567899999999888877   68999999999888877431       22 23 899999


Q ss_pred             CCCCEEEEEe-CcCeEEEEECCCCceee-----eeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEE-E
Q 003579          484 STNTLMISAG-YHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRK-F  553 (809)
Q Consensus       484 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~-----~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~-~  553 (809)
                      |++..++.+. .++.|.+.|........     ..........+.+.+++..+.+....   +.+...|..++..... .
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~  248 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL  248 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence            9998666555 78999999987776663     23444667789999999977776554   5999999999887665 2


Q ss_pred             ecCCCCeeeEEECCCCCEEEEEe-CCCeEEEEEcCCccEEEEeeeCcc----eEEEEEcCCCC
Q 003579          554 EGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMD  611 (809)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s-~D~~I~vwd~~~~~~i~~~~~~~~----v~~l~~spdg~  611 (809)
                      ..-......+.++|+|+++.+.. ..+.+.+-|..+......+.....    +..+++.+...
T Consensus       249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  311 (381)
T COG3391         249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD  311 (381)
T ss_pred             ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence            22111456789999999988774 448899999999888877664443    66666666544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.20  E-value=0.0012  Score=64.60  Aligned_cols=214  Identities=12%  Similarity=0.117  Sum_probs=119.6

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      ...+..|+|.|+...++++....+.|..+++ +|+.+..+...-.+..-++++..++.++++.-.++.+.++.++.....
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            3469999999987768888889999999997 478888877444567889999988877777767899999988554322


Q ss_pred             cee--EE-----eccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc---cceecchhhHHHHHhhccchhhhhcc
Q 003579          304 PRL--LR-----FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKL  373 (809)
Q Consensus       304 ~~~--~~-----~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (809)
                      ...  ..     ....+...+-.++|.+.++.|+.+-......++.+....   ............              
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~--------------  165 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD--------------  165 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---------------
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc--------------
Confidence            111  11     112355678999999988888888777777888876521   111000000000              


Q ss_pred             CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 003579          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN  452 (809)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~~g~i~i~~  452 (809)
                                                                    .......+.++++.|. |++++....+..+..+|
T Consensus       166 ----------------------------------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d  199 (248)
T PF06977_consen  166 ----------------------------------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD  199 (248)
T ss_dssp             ----------------------------------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred             ----------------------------------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence                                                          0011145677888874 56777777788888888


Q ss_pred             CCCCceeeeeeCccc-ccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          453 LQSGISRGSYLDMSE-RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       453 ~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                       ..|.....+..... ..+...-...-+|+++++|++.+++ .-+..++
T Consensus       200 -~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  200 -RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             -CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence             55665554432110 0111122467899999999766654 4444433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.19  E-value=0.00033  Score=74.97  Aligned_cols=183  Identities=16%  Similarity=0.130  Sum_probs=100.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      +.....+|.+.++ +++-..++.|.++.--.......+.         ....+..+..   |.+|...+.+ .|.+||+.
T Consensus        69 G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~---------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~  134 (443)
T PF04053_consen   69 GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK---------LPFSVEKIFG---GNLLGVKSSD-FICFYDWE  134 (443)
T ss_dssp             EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--------------SS-EEEEE----SSSEEEEETT-EEEEE-TT
T ss_pred             CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc---------CCcccceEEc---CcEEEEECCC-CEEEEEhh
Confidence            3445677888555 5555558889996433333322222         1123444433   7777766654 89999999


Q ss_pred             CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-----------eEEEEEecCCCCeeeEEECCCCCEEE
Q 003579          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEGHTDRITDFCFSEDGKWLL  573 (809)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-----------~~~~~~~~h~~~I~~l~fspdg~~l~  573 (809)
                      +++.++.+.... +..+.|++++.++|..+.+ .+.+++.+..           .....+..-...|.+.+|..|  .++
T Consensus       135 ~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fi  210 (443)
T PF04053_consen  135 TGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFI  210 (443)
T ss_dssp             T--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEE
T ss_pred             HcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEE
Confidence            999999998765 8999999999999999865 6777665432           022233222578999999877  455


Q ss_pred             EEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       574 s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      -.+.. .++.  +..|+.--.-....++.=+...|..+.+.....+++ |..+.+.
T Consensus       211 YtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~-v~~~~ld  262 (443)
T PF04053_consen  211 YTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN-VISYELD  262 (443)
T ss_dssp             EE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE--
T ss_pred             EEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCC-EEEEEEC
Confidence            44444 6776  555655444445667777777787777888777774 7777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.18  E-value=0.0082  Score=66.71  Aligned_cols=69  Identities=14%  Similarity=0.175  Sum_probs=49.4

Q ss_pred             CCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEE----------EEEecCCCCEEEEEcCCCcEEEEECCCceeeee
Q 003579          193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTA----------LAFSSDGQPLLASGASSGVISIWNLEKRRLQSV  262 (809)
Q Consensus       193 ~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~----------l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~  262 (809)
                      +..|.+++.++.|.-.|..+|+.+-++.......+..          +++. ++  .++.++.++.|.-.|.++|+.+..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~--~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DG--KVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CC--EEEEEcCCCEEEEEECCCCCEEee
Confidence            5678888888999999999999888876432211211          1222 23  466778899999999999998877


Q ss_pred             ee
Q 003579          263 IR  264 (809)
Q Consensus       263 ~~  264 (809)
                      ..
T Consensus       146 ~~  147 (527)
T TIGR03075       146 KK  147 (527)
T ss_pred             cc
Confidence            65

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.16  E-value=0.0078  Score=64.02  Aligned_cols=77  Identities=12%  Similarity=0.125  Sum_probs=66.7

Q ss_pred             CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE
Q 003579          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (809)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~  549 (809)
                      .....|.+.+++|+.+.++.|+.||.|.+||...+.... ....-.++.++|||+|.++++|++.|.+.+||+.-...
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            677899999999999999999999999999987764433 35567789999999999999999999999999875433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=7.3e-05  Score=80.95  Aligned_cols=184  Identities=12%  Similarity=0.180  Sum_probs=128.3

Q ss_pred             cccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc
Q 003579           93 SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK  172 (809)
Q Consensus        93 ~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~  172 (809)
                      ...+.+.++.+.+++-|+.+|.|++.+.+....      +...+...      .-+|  .++++|+.||+|.|-.+-+.+
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~------~~~~~s~~------~~~G--ey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPK------TNFDHSSS------ILEG--EYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCccc------cccccccc------ccCC--ceEEEecCCCcEEEeeccCCc
Confidence            345667777899999999999999998765421      11111111      3345  789999999999999998888


Q ss_pred             eEEEEcCCCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579          173 KLYEFKGWGSSISSCVSSPA-----LDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (809)
Q Consensus       173 ~~~~~~~~~~~I~~l~~sp~-----~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d  246 (809)
                      ...++.- ..++.+++++|+     .+.+++|+.-| +.++.-.- |...........|+|.++.|..+   ++|-++.+
T Consensus       105 ~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~  179 (846)
T KOG2066|consen  105 EITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDD  179 (846)
T ss_pred             cceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCC
Confidence            7776654 578999999998     46888998888 77775331 11111122333789999999844   77777766


Q ss_pred             CcEEEEECCCceeeeeeeccccc-----ceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579          247 GVISIWNLEKRRLQSVIREAHDN-----AIISLHFFANEPVLMSASADNSIKMWIFD  298 (809)
Q Consensus       247 g~I~iwdl~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~d~~i~vw~~~  298 (809)
                      | |++||..+++.+..+...+..     --..+.|.++.+ |+.|= .-+|++..+.
T Consensus       180 G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  180 G-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK  233 (846)
T ss_pred             C-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence            5 999999999988888744421     234577776654 44443 3468888776

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.15  E-value=0.0017  Score=66.53  Aligned_cols=180  Identities=15%  Similarity=0.133  Sum_probs=93.7

Q ss_pred             EEeCCCCCCEEEEEeC---CCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579          144 IMHPDTYLNKVIVGSQ---EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (809)
Q Consensus       144 ~~~p~~~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~  220 (809)
                      +|.+++  ++|+.++.   ...+.+.|+.+++..+.-.+..........+|+.+.++-......|+-.|+.+.+....+.
T Consensus        42 ~ft~dG--~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   42 CFTDDG--RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             -B-TTS---EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CcCCCC--CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            466777  67777665   4568888999998877655432323345667888887766566789999999887655554


Q ss_pred             ccCCCcEEEEEEec--CCCCEEEEEc---C-------------------CCcEEEEECCCceeeeeeecccccceEEEEE
Q 003579          221 HSMRGAVTALAFSS--DGQPLLASGA---S-------------------SGVISIWNLEKRRLQSVIREAHDNAIISLHF  276 (809)
Q Consensus       221 ~~~~~~V~~l~fs~--dg~~~lasg~---~-------------------dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~  276 (809)
                      .. .+.+-...|..  |+. .++-.-   .                   ...|.-.|+.+|+....+.  -...+..+.|
T Consensus       120 ~p-~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~f  195 (386)
T PF14583_consen  120 VP-DDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQF  195 (386)
T ss_dssp             ---TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEE
T ss_pred             CC-cccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCccc
Confidence            43 55565566653  444 333211   1                   2346667888887665554  4567889999


Q ss_pred             ecCCCEEEEEc----CCCc-EEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEE
Q 003579          277 FANEPVLMSAS----ADNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (809)
Q Consensus       277 ~~~~~~l~s~s----~d~~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  330 (809)
                      +|..+.+++=+    .+.. -|||-++......+.+.... -...+..=-|.+||..|.
T Consensus       196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EE
T ss_pred             CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEE
Confidence            99777555533    2332 48898887665444432221 111222233666776554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.09  E-value=0.018  Score=59.20  Aligned_cols=170  Identities=19%  Similarity=0.193  Sum_probs=85.4

Q ss_pred             EEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC-----eEEEEEC--CCCceeeee--ecCCCe
Q 003579          448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWDF--KGRDLKSRW--EVGCSL  518 (809)
Q Consensus       448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~--~~~~~~~~~--~~~~~i  518 (809)
                      |...|+.+|+....+         .-...+..+.++|....++.-+..|     .-|||-+  .........  .....+
T Consensus       170 i~~idl~tG~~~~v~---------~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~  240 (386)
T PF14583_consen  170 IFTIDLKTGERKVVF---------EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV  240 (386)
T ss_dssp             EEEEETTT--EEEEE---------EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred             EEEEECCCCceeEEE---------ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence            445566666655544         2345567888898776555554333     1255544  333222221  222455


Q ss_pred             EEEEEeeCCCEEEEEeC-----CCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCC--------------
Q 003579          519 VKIVYHRVNGLLATVAD-----DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG--------------  579 (809)
Q Consensus       519 ~~~~~s~~~~~la~~~~-----d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~--------------  579 (809)
                      ..=-|.|||..+..-+.     +..|.-+|..+++......  ......+--++||++++-=+.|.              
T Consensus       241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~  318 (386)
T PF14583_consen  241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN  318 (386)
T ss_dssp             EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-----------------
T ss_pred             ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence            56678999987765332     4567778888876543222  22445666789999887433332              


Q ss_pred             --eEEEEEcCCccEEEEeeeCc-----------ceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          580 --SLRIWDVILARQIDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       580 --~I~vwd~~~~~~i~~~~~~~-----------~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                        .|+++++..++.....++..           .=-.+.|||||++++..+.-.+...||-+
T Consensus       319 ~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  319 DPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             --EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence              56778888776554333211           13568999999998888776545666543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.07  E-value=0.0021  Score=67.26  Aligned_cols=209  Identities=13%  Similarity=0.185  Sum_probs=125.7

Q ss_pred             CeEEEEEcCccEEEEecC-CCCCCcEEEEEeC-------CeEEEEEC-------------CeEEEEECCe------eEEE
Q 003579           36 KAFHIYNCAKLNLVLVGP-QLPKKIRALASYR-------DYTFAAYG-------------NHIAVVKRAH------QVAT   88 (809)
Q Consensus        36 ~~i~iwd~~~~~~~~~~~-~~~~~I~~la~~~-------~~~~~a~g-------------~~i~vw~~~~------~~~~   88 (809)
                      ..|++.|..+.+.+.... .....+.+++...       ...|++.|             +.|.+++..+      ++..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            468889988876665442 2345566665432       24555432             3388887654      3333


Q ss_pred             --EccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCc-cccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579           89 --WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIE-ENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL  165 (809)
Q Consensus        89 --~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l  165 (809)
                        -....++|+++...+++|+.+. .+.|.+|++...+ .    ...-..+... ....+..-+  ++|++|.....+.+
T Consensus        82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l----~~~~~~~~~~-~i~sl~~~~--~~I~vgD~~~sv~~  153 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTL----LKKAFYDSPF-YITSLSVFK--NYILVGDAMKSVSL  153 (321)
T ss_dssp             EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSE----EEEEEE-BSS-SEEEEEEET--TEEEEEESSSSEEE
T ss_pred             EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccc----hhhheecceE-EEEEEeccc--cEEEEEEcccCEEE
Confidence              3456889999998888877766 7899999999888 3    2222222222 233333334  68999999888998


Q ss_pred             EeCCC-CceEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-------C--eEEEEEeccCCCcEEEE---
Q 003579          166 WNIST-KKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-------D--EELVTFTHSMRGAVTAL---  230 (809)
Q Consensus       166 wd~~~-~~~~~~~~--~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~-------~--~~~~~~~~~~~~~V~~l---  230 (809)
                      +..+. ++.+..+.  .....++++.+-++++.++++..+|.+.++....       +  +.......+....|+++   
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~  233 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG  233 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence            85543 33233332  2356689999987778999999999999998863       2  22222333335678888   


Q ss_pred             EEec--CCC-----CEEEEEcCCCcEEEE
Q 003579          231 AFSS--DGQ-----PLLASGASSGVISIW  252 (809)
Q Consensus       231 ~fs~--dg~-----~~lasg~~dg~I~iw  252 (809)
                      ++.|  .+.     +.++.++.+|.|...
T Consensus       234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  234 SLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EeeecCCCCcccccceEEEEecCCEEEEE
Confidence            6555  222     136777788888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.06  E-value=0.0014  Score=69.37  Aligned_cols=242  Identities=11%  Similarity=0.138  Sum_probs=130.6

Q ss_pred             ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCc---------------------------------------eeEEec
Q 003579          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------------------------------------RLLRFR  310 (809)
Q Consensus       270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~---------------------------------------~~~~~~  310 (809)
                      .|+.+.|.++..-|+.+...|.|.+|.+.......                                       ......
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999998899999999999999775542111                                       001111


Q ss_pred             cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579          311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (809)
Q Consensus       311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  390 (809)
                      ....++|++++.+.-| +++.|..+|.+.+.|++.+..+..-....                                  
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~----------------------------------  127 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE----------------------------------  127 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG----------------------------------
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------------------------------
Confidence            2336788999987555 99999999999999997665444321111                                  


Q ss_pred             eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc-----CCC---CEEEEEeCCCcEEEEECCC---Ccee
Q 003579          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-----ACG---NFAVLGTAGGWIERFNLQS---GISR  459 (809)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----~~g---~~l~~g~~~g~i~i~~~~~---~~~~  459 (809)
                                              +  .........++++.|+     .|+   -.+++|+..|.+.+|.+.-   +...
T Consensus       128 ------------------------~--~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~  181 (395)
T PF08596_consen  128 ------------------------S--FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFS  181 (395)
T ss_dssp             ----------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE
T ss_pred             ------------------------c--ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceE
Confidence                                    0  0000111344444443     223   4788999999999998752   2222


Q ss_pred             eeeeCcccccccCccccEEEEE-EcCCC--------------------CEEEEEeCcCeEEEEECCCCceeeeeecC-CC
Q 003579          460 GSYLDMSERSNYAHNGEVVGVA-CDSTN--------------------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS  517 (809)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~-~~~~~--------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  517 (809)
                      ..+...    ...+.+.|..+. ++.+.                    .-++....+..++++...+.+..+..... ..
T Consensus       182 v~~~~~----~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~  257 (395)
T PF08596_consen  182 VQFAGA----TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFL  257 (395)
T ss_dssp             EEEEEE----E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EE
T ss_pred             EEEeec----cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccc
Confidence            222211    024555655555 32210                    12344445688999999888776655522 22


Q ss_pred             eEEEEE-----eeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC----CCeeeEEECCCCCEEEEEe
Q 003579          518 LVKIVY-----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       518 i~~~~~-----s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~----~~I~~l~fspdg~~l~s~s  576 (809)
                      ...+++     ...+..|++-..+|.|++|.+...+.+..+.-+.    ..+....++++|..++-.+
T Consensus       258 ~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  258 CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred             cceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence            223344     2356788888999999999999999888877542    2355667777777555444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.05  E-value=0.0055  Score=65.86  Aligned_cols=109  Identities=11%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      +++..+++||+|++++.-+.+|.+.+.+..-.+....+..       .-......++|..+...++.-  ...|.+..-.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~-------~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~  287 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT-------DSKSPPKQMAWCGNDAVVLSW--EDELLLVGPD  287 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec-------CcCCCCcEEEEECCCcEEEEe--CCEEEEECCC
Confidence            6899999999999999999999999987665555544431       223344566665443222221  2233333211


Q ss_pred             CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 003579          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  556 (809)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h  556 (809)
                      .             ..+.|.-++..++..--|| +||+.-...+.+++....
T Consensus       288 ~-------------~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~  325 (410)
T PF04841_consen  288 G-------------DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDS  325 (410)
T ss_pred             C-------------CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHH
Confidence            1             1123333444444444455 777776666666665433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.03  E-value=0.00018  Score=76.96  Aligned_cols=169  Identities=17%  Similarity=0.207  Sum_probs=99.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      .....+.++|+|+++++ +.+|.-.+|........             ..+.-...+|.+.++ +|+-...+.|.++.--
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-------------~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~   97 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-------------AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNF   97 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-------------EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-------------ccCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence            45788999999999999 67788888884433322             224456678888555 6666668889996333


Q ss_pred             CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEE
Q 003579          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  584 (809)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vw  584 (809)
                      +.+....+.....+..+..   |.+|+..+.+ .|.+||.++++.++++...  +|..+.||++|.+++-.+.+ .+.|+
T Consensus        98 ~~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il  170 (443)
T PF04053_consen   98 KNEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYIL  170 (443)
T ss_dssp             EE-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred             ccccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence            3333344555544555544   7877777655 8999999999999999743  48999999999999988865 57887


Q ss_pred             EcCCc-----------cEEEEeee-CcceEEEEEcCCCCeEEEE
Q 003579          585 DVILA-----------RQIDAIHV-DVSITALSLSPNMDVLATA  616 (809)
Q Consensus       585 d~~~~-----------~~i~~~~~-~~~v~~l~~spdg~~lat~  616 (809)
                      +....           ..+..+.. ...|.+.+|..| -++.|.
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT  213 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT  213 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-
T ss_pred             EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc
Confidence            76543           13333333 667899999766 444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.01  E-value=0.0032  Score=61.72  Aligned_cols=185  Identities=11%  Similarity=0.114  Sum_probs=115.9

Q ss_pred             CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579          423 NPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (809)
Q Consensus       423 ~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw  501 (809)
                      -...+..+++.|+. .++++....+.|..++.+ |+.+..+.-       .-.+..-++++..++.++++.-.++.+.++
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-------~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-------DGFGDYEGITYLGNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--------SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-------CCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence            33569999999975 566777888999999975 667666652       234678899999888888877778999999


Q ss_pred             ECCCCc------eeeeee------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC---CeEEE--EEe------cCCC
Q 003579          502 DFKGRD------LKSRWE------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVR--KFE------GHTD  558 (809)
Q Consensus       502 d~~~~~------~~~~~~------~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~---~~~~~--~~~------~h~~  558 (809)
                      ++....      ....+.      ....+-.++|.+.++.|.++.+..-..+|.+..   ...+.  ...      ....
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            884321      112222      225688999999988888887777677776653   21111  111      1345


Q ss_pred             CeeeEEECCC-CCEEEEEeCCCeEEEEEcCCccEEEEeeeCc----------ceEEEEEcCCCCeEEEE
Q 003579          559 RITDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIHVDV----------SITALSLSPNMDVLATA  616 (809)
Q Consensus       559 ~I~~l~fspd-g~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~----------~v~~l~~spdg~~lat~  616 (809)
                      .+.+++++|. |.+++-+..+..|.++| .+|+.+..+....          ..-.|+|.++|+..++.
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            5788999985 56777788889999999 7799888776543          38899999999766554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.99  E-value=0.0089  Score=61.01  Aligned_cols=244  Identities=14%  Similarity=0.127  Sum_probs=138.1

Q ss_pred             CCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE--E----
Q 003579          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL--R----  308 (809)
Q Consensus       235 dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~--~----  308 (809)
                      .++ .|+.|+.+| |.++++........+.  +...|..+...++-+.|++-+ |+.+.+++++.-......-  .    
T Consensus         6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCC-EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            344 788898888 9999983333222222  334499999999888777775 5999999887653322110  0    


Q ss_pred             ----eccCCCCCCeeEE--EecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579          309 ----FRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (809)
Q Consensus       309 ----~~~~h~~~v~~i~--~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (809)
                          ........+...+  -...+...+.....+.|.+|..........                               
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-------------------------------  129 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-------------------------------  129 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-------------------------------
Confidence                0111222344433  112333344444455777777654311110                               


Q ss_pred             cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (809)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (809)
                                                 ....+.      .-+..+.+++|.  ++.+++|..++ ..+.|+.++.....+
T Consensus       130 ---------------------------~~~ke~------~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  130 ---------------------------KLLKEI------SLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELL  173 (275)
T ss_pred             ---------------------------ceeEEE------EcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence                                       000000      112677788887  78888888655 888999977765544


Q ss_pred             eCcccc----cccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCcee-eeeecCCCeEEEEEeeCCCEEEEEeCCC
Q 003579          463 LDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRVNGLLATVADDL  537 (809)
Q Consensus       463 ~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~i~~~~~s~~~~~la~~~~d~  537 (809)
                      ......    .......++..+... ++.+|++.  |..-.+.|....... ..+.....+.++++.  ..+|++.+. +
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~  247 (275)
T PF00780_consen  174 DPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-N  247 (275)
T ss_pred             CccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-C
Confidence            211100    000112233333433 45666543  334444554433222 466667777888885  457766655 5


Q ss_pred             eEEEEEcCCCeEEEEEecC
Q 003579          538 VIRLFDVVALRMVRKFEGH  556 (809)
Q Consensus       538 ~I~v~d~~~~~~~~~~~~h  556 (809)
                      .|.||++.++++++++.+.
T Consensus       248 ~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  248 SIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             EEEEEECcCCcEEEEEECC
Confidence            5999999999999888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.98  E-value=0.00021  Score=76.23  Aligned_cols=186  Identities=15%  Similarity=0.111  Sum_probs=126.9

Q ss_pred             CCeEEEEEcCCCCEEEEE---eCC-CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe-CcCe--
Q 003579          425 TAVKACTISACGNFAVLG---TAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD--  497 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g---~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~--  497 (809)
                      ..+..-.|+|++..++.-   ... ..+.++++.++.......         ..+.-...+|+|||+.|+-+. .||.  
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence            456667888988776543   222 468999999887766553         334445678999998777554 5665  


Q ss_pred             EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCC---eEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (809)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s  574 (809)
                      |.+.|+.++...+.....+.-+.-.|+|||+.++..++.+   .|.++|.+.....+ +.-..+.-..-.|||||++|+.
T Consensus       264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEE
Confidence            6666887777544333334445778999999998887643   67777888766533 3323322237789999999997


Q ss_pred             EeC-CCe--EEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCC
Q 003579          575 SGM-DGS--LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (809)
Q Consensus       575 ~s~-D~~--I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~  620 (809)
                      .+. +|.  |.+.|+.++..++.+..........|.|+|..+...+...
T Consensus       343 ~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             EeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            764 344  7777887776666666555567788999998888776554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.97  E-value=0.002  Score=67.39  Aligned_cols=178  Identities=15%  Similarity=0.158  Sum_probs=113.0

Q ss_pred             CCEEEEEeC---------C-CcEEEEECCCC-----ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579          436 GNFAVLGTA---------G-GWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (809)
Q Consensus       436 g~~l~~g~~---------~-g~i~i~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i  500 (809)
                      ..++++|+.         . |.|.+|++...     +......       ....++|++++-- ++. ++.+. ++.|.+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-------~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v  111 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-------TEVKGPVTAICSF-NGR-LVVAV-GNKLYV  111 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-------EEESS-EEEEEEE-TTE-EEEEE-TTEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-------EeecCcceEhhhh-CCE-EEEee-cCEEEE
Confidence            578888865         2 99999999984     2222111       2557889998877 344 44333 489999


Q ss_pred             EECCCCc-eeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC-CeEEEEEec--CCCCeeeEEECCCCCEEEEEe
Q 003579          501 WDFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEG--HTDRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       501 wd~~~~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~-~~~~~~~~~--h~~~I~~l~fspdg~~l~s~s  576 (809)
                      |++...+ +...-....++........++++++|.....+.++..+. .+.+..+..  ....++++.|-+|++.++.+.
T Consensus       112 ~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D  191 (321)
T PF03178_consen  112 YDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD  191 (321)
T ss_dssp             EEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred             EEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence            9999888 666555555444455555577999999888888875443 232223222  345588999987777899999


Q ss_pred             CCCeEEEEEcCC-------cc----EEEEeeeCcceEEE---EEcCC--CC------eEEEEEeCCCeEE
Q 003579          577 MDGSLRIWDVIL-------AR----QIDAIHVDVSITAL---SLSPN--MD------VLATAHVDQNGVY  624 (809)
Q Consensus       577 ~D~~I~vwd~~~-------~~----~i~~~~~~~~v~~l---~~spd--g~------~lat~~~d~~~i~  624 (809)
                      .+|.+.++..+.       +.    .+..++.+..|+++   ++.|.  +.      .++.++.+| +|.
T Consensus       192 ~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G-~Ig  260 (321)
T PF03178_consen  192 KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDG-SIG  260 (321)
T ss_dssp             TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EE
T ss_pred             CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCC-EEE
Confidence            999999998763       22    34556667778888   66662  22      377777787 466

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.94  E-value=0.00087  Score=75.68  Aligned_cols=135  Identities=14%  Similarity=0.186  Sum_probs=96.1

Q ss_pred             CCCeEEEEeCCCCceEEEEcCCCCC-EEEEEEcC-----CCCEEEEEeCCCeEEEEEeeCCe--EEEEEe--ccCCCcEE
Q 003579          159 QEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE--ELVTFT--HSMRGAVT  228 (809)
Q Consensus       159 ~dg~i~lwd~~~~~~~~~~~~~~~~-I~~l~~sp-----~~~~la~g~~dg~i~iwd~~~~~--~~~~~~--~~~~~~V~  228 (809)
                      ..+.|+-.|++.|+.+..++.|... |..++-..     ...-..+|-.+..+..||.+-..  .+....  -......+
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            3467999999999999999987654 66554331     12346777888999999998543  221111  11245688


Q ss_pred             EEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEe
Q 003579          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (809)
Q Consensus       229 ~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~  297 (809)
                      |++-+.+|  .+|+|+.+|.|++||-- ++...+...+-..+|.+|..+.||++++..+. ..+.+++.
T Consensus       582 ~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  582 CFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             EEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            88888888  59999999999999953 43333333377899999999999998877664 55666654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.91  E-value=0.015  Score=62.53  Aligned_cols=194  Identities=13%  Similarity=0.158  Sum_probs=104.5

Q ss_pred             EEEEEC-CeeEEEEccccccEEEEEE-eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEE-----EEeCCC
Q 003579           77 IAVVKR-AHQVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-----IMHPDT  149 (809)
Q Consensus        77 i~vw~~-~~~~~~~~~h~~~V~~l~~-~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~  149 (809)
                      |.+|+. |+.+..+.-..++|.++.| +...|+....||.++++|+.... .......+  ....+..+     .+...|
T Consensus        63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i--~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEI--EEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhc--cccCcccccccccccCCCC
Confidence            777864 5666663322389999999 56788899999999999987544 11101111  11111111     112233


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCc-eEEEE---cCCCC------CEEE-EEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE
Q 003579          150 YLNKVIVGSQEGSLQLWNISTKK-KLYEF---KGWGS------SISS-CVSSPALDVVAVGCSDGKIHVHNVRYDEELVT  218 (809)
Q Consensus       150 ~~~~l~~~~~dg~i~lwd~~~~~-~~~~~---~~~~~------~I~~-l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~  218 (809)
                          +++-..++.+.+.+--... ....+   .....      .... ..++.+....+....++.+.+.+-...+.   
T Consensus       140 ----ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---  212 (410)
T PF04841_consen  140 ----IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---  212 (410)
T ss_pred             ----EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence                4444455655555322211 11111   11000      0000 22333433344444444444333221111   


Q ss_pred             EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE
Q 003579          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL  283 (809)
Q Consensus       219 ~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  283 (809)
                      +.  ..+++..|+.||+|+ ++|.-..+|.+.+.+..-.+....+...-......+.|.-+...+
T Consensus       213 i~--~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~  274 (410)
T PF04841_consen  213 ID--SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV  274 (410)
T ss_pred             cc--CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence            11  146899999999999 888888899999998766666666653434566778887654333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.00016  Score=76.40  Aligned_cols=101  Identities=15%  Similarity=0.254  Sum_probs=76.3

Q ss_pred             EEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC
Q 003579          115 MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD  194 (809)
Q Consensus       115 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~  194 (809)
                      -++|++...+.....+..+... ..+.+|+++|+.  .+++.|+.||+|.+||...+...  +....-..+.++|+|+|.
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~-s~v~~ca~sp~E--~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~ga  312 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLP-SQVICCARSPSE--DKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGA  312 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecC-CcceEEecCccc--ceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCc
Confidence            4567777665544445555443 445788899999  89999999999999998666333  223456688999999999


Q ss_pred             EEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579          195 VVAVGCSDGKIHVHNVRYDEELVTFT  220 (809)
Q Consensus       195 ~la~g~~dg~i~iwd~~~~~~~~~~~  220 (809)
                      ++++|+..|.+.+||+.-......+.
T Consensus       313 i~~V~s~qGelQ~FD~ALspi~~qLl  338 (545)
T PF11768_consen  313 IFVVGSEQGELQCFDMALSPIKMQLL  338 (545)
T ss_pred             EEEEEcCCceEEEEEeecCccceeec
Confidence            99999999999999998655444443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.038  Score=59.04  Aligned_cols=285  Identities=14%  Similarity=0.116  Sum_probs=178.5

Q ss_pred             EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (809)
Q Consensus       163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la  241 (809)
                      +.+++..+.+....+..+. ....+...|++..+.+.... ..+...+.. ...+..........-..++.++++....+
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence            6666666666555555433 55667888888655554432 245555444 22222211110134567888888886777


Q ss_pred             EEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC-CcEEEEEeeCCCCCceeEEeccCCCCCCeeE
Q 003579          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (809)
Q Consensus       242 sg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (809)
                      ....++.|.+.|..+.+.......+.  ....+++.++++.+..+... +.-.++.++....  ........-..+ ..+
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--~~~~~~~vG~~P-~~~  165 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--KVTATIPVGNTP-TGV  165 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--eEEEEEecCCCc-ceE
Confidence            77778999999988888888776444  67889999999877766553 2344444454433  233332222233 899


Q ss_pred             EEecCCCEEEEEE-CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579          321 RFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (809)
Q Consensus       321 ~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (809)
                      ++.|+|+.++.+. .++.+.+.+.......+ -...                                            
T Consensus       166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~--------------------------------------------  200 (381)
T COG3391         166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG--------------------------------------------  200 (381)
T ss_pred             EECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc--------------------------------------------
Confidence            9999999777665 67888888854332211 0000                                            


Q ss_pred             ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCcccc
Q 003579          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGE  476 (809)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~  476 (809)
                                         ...........+.++++|+++.+....   +.+...|..++.....-..      .+.. .
T Consensus       201 -------------------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~  254 (381)
T COG3391         201 -------------------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-A  254 (381)
T ss_pred             -------------------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-C
Confidence                               000111455678899999987776555   5899999988877665210      1222 5


Q ss_pred             EEEEEEcCCCCEEEEEe-CcCeEEEEECCCCceeeeeecCCC----eEEEEEee
Q 003579          477 VVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS----LVKIVYHR  525 (809)
Q Consensus       477 v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~----i~~~~~s~  525 (809)
                      ...+.++|+|+.+.+.. ..+.+.+-|..+............    +..+++.+
T Consensus       255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         255 PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence            67789999999888874 448899999888887776654432    55555554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.80  E-value=0.026  Score=57.57  Aligned_cols=147  Identities=18%  Similarity=0.217  Sum_probs=91.6

Q ss_pred             CCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeee-------
Q 003579          191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI-------  263 (809)
Q Consensus       191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~-------  263 (809)
                      ..++.|++|+.+| +.++++...........  ...|..+...++-+ .|++-+ |+.+.++++..-......       
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccc
Confidence            4578999999988 89999843333333332  23499999999877 444444 599999998765443311       


Q ss_pred             ------ecccccceEEEE--EecCC-CEEEEEcCCCcEEEEEeeCCCCCc-eeEEeccCCCCCCeeEEEecCCCEEEEEE
Q 003579          264 ------REAHDNAIISLH--FFANE-PVLMSASADNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (809)
Q Consensus       264 ------~~~h~~~V~~l~--~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (809)
                            .......+...+  -...+ ..|+.+ ..+.|.+|.+....... ...+.+ .-...+..++|.  ++.++.|.
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEe
Confidence                  111233444444  11233 344444 45689999887754333 344443 344788999998  55677777


Q ss_pred             CCCCEEEEEeeecc
Q 003579          334 QDRAFRLFSVIQDQ  347 (809)
Q Consensus       334 ~dg~i~~wd~~~~~  347 (809)
                      .++ ..+.|+.++.
T Consensus       156 ~~~-f~~idl~~~~  168 (275)
T PF00780_consen  156 SKG-FYLIDLNTGS  168 (275)
T ss_pred             CCc-eEEEecCCCC
Confidence            555 7788887543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.79  E-value=0.001  Score=71.17  Aligned_cols=167  Identities=17%  Similarity=0.182  Sum_probs=112.4

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEE---eCC-CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC
Q 003579          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG---CSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (809)
Q Consensus       161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g---~~d-g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg  236 (809)
                      ..+.+-|.. |...+.+......+..-+|+|+++.++..   ... ..+.++++.+++.......  .+.-...+|+|||
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG  249 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDG  249 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCC
Confidence            445555544 66666666667778888999999876654   222 4699999998887666653  4556788999999


Q ss_pred             CCEEEEEcCCCc--EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEE-cCCCcEEEEEeeCCCCCceeEEeccCC
Q 003579          237 QPLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGH  313 (809)
Q Consensus       237 ~~~lasg~~dg~--I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (809)
                      +.++.+...||.  |.+.|+.++.... +. .-.+.-..-.|+|||+.++-. +..|.-.||.++......+.+..-.  
T Consensus       250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~--  325 (425)
T COG0823         250 SKLAFSSSRDGSPDIYLMDLDGKNLPR-LT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG--  325 (425)
T ss_pred             CEEEEEECCCCCccEEEEcCCCCccee-cc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC--
Confidence            977777777775  5666887776443 33 222333377899999976655 4577888888777655443332221  


Q ss_pred             CCCCeeEEEecCCCEEEEEECC
Q 003579          314 SAPPLCIRFYANGRHILSAGQD  335 (809)
Q Consensus       314 ~~~v~~i~~~~~~~~l~s~~~d  335 (809)
                       ..-..-.++|||++++..+..
T Consensus       326 -~~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         326 -GGNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             -CCCcCccCCCCCCEEEEEecc
Confidence             122267789999999987743

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.79  E-value=8.1e-06  Score=85.68  Aligned_cols=201  Identities=15%  Similarity=0.155  Sum_probs=137.1

Q ss_pred             CCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcee-eeeeCcccccccCccccEEEEEEcCCC-CEEEEEe----CcC
Q 003579          425 TAVKACTISACG--NFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG----YHG  496 (809)
Q Consensus       425 ~~v~~v~~s~~g--~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~----~dg  496 (809)
                      ..+.|++..-+.  ..+++|..+|.|.+-+....... ..+.       .+|....++++|++.. ..||.|-    .|.
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-------ccccccccccccccccHHHHHhhhhhhcccC
Confidence            456666665543  57899999999999988765544 3333       4788899999999864 4444442    356


Q ss_pred             eEEEEECCCC--ceeeeee----cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC-CC
Q 003579          497 DIKVWDFKGR--DLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DG  569 (809)
Q Consensus       497 ~i~iwd~~~~--~~~~~~~----~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg  569 (809)
                      .+.|||+.++  .+.....    ......+++|-.+.+++.+|.....+.++|++... .+.-.-.+..+..+..+| .+
T Consensus       130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSP  208 (783)
T ss_pred             CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCC
Confidence            7999999877  3322222    22456688999999999999999999999987321 111111334566677888 67


Q ss_pred             CEEEEEeCCCeEEEEEcC-C-ccEEEEeee-----CcceEEEEEcCCC-CeEEEEEeCCCeEEEeecCcccCC
Q 003579          570 KWLLSSGMDGSLRIWDVI-L-ARQIDAIHV-----DVSITALSLSPNM-DVLATAHVDQNGVYLWVNRCMFSG  634 (809)
Q Consensus       570 ~~l~s~s~D~~I~vwd~~-~-~~~i~~~~~-----~~~v~~l~~spdg-~~lat~~~d~~~i~lW~~~~~~~~  634 (809)
                      .|+++-. ||.|.+||.. . ..++..+..     ...+..++|+|.. ..|++...|..+|+++++...-.+
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~  280 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE  280 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence            7888666 9999999942 2 122222222     2238999999954 368888888889999998654443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00029  Score=74.51  Aligned_cols=95  Identities=23%  Similarity=0.297  Sum_probs=79.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEE-EEEEecCCCCEEEEEcCCCcEEEEECCCcee
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT-ALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~-~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~  259 (809)
                      ...|.-+.|+|.-+++|.+..+|.|.++.+. .+.+.++..+ ...++ +++|.|||+ +||+|-.||+|++.|.+++..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence            4568889999999999999999999999988 7888888855 44555 999999999 999999999999999999987


Q ss_pred             eeeeecccccceEEEEEec
Q 003579          260 QSVIREAHDNAIISLHFFA  278 (809)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~  278 (809)
                      +......-...|.++.|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            7764334566778887763

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.59  E-value=3.9e-05  Score=80.77  Aligned_cols=204  Identities=17%  Similarity=0.209  Sum_probs=130.0

Q ss_pred             cEEEEEEecCC-CCEEEEEcCCCcEEEEECCCceee-eeeecccccceEEEEEec-CCCEEEEEc----CCCcEEEEEee
Q 003579          226 AVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQ-SVIREAHDNAIISLHFFA-NEPVLMSAS----ADNSIKMWIFD  298 (809)
Q Consensus       226 ~V~~l~fs~dg-~~~lasg~~dg~I~iwdl~~~~~~-~~~~~~h~~~V~~l~~~~-~~~~l~s~s----~d~~i~vw~~~  298 (809)
                      .+.|+++.-+. +.++++|..+|.|.+-..+...-. .....+|....++++|++ |...|+.|-    .|..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            45566655433 358999999999999988765433 344447889999999998 445666653    36789999988


Q ss_pred             CCCCCceeEEecc-CCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccc-ceecchhhHHHHHhhccchhhhhccCce
Q 003579          299 TTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPV  376 (809)
Q Consensus       299 ~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (809)
                      ..-..|..-..+. +......+++|..+.+.+++|...+.+.++|++.... ..++                        
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------------------------  193 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------------------------  193 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------------------------
Confidence            7622222222222 2444566888888888899999888999999873321 1111                        


Q ss_pred             eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC-C
Q 003579          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNL-Q  454 (809)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~-~  454 (809)
                                                                    ....+..+.++| .+++++.-. +|.|.+||. .
T Consensus       194 ----------------------------------------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~r  226 (783)
T KOG1008|consen  194 ----------------------------------------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYR  226 (783)
T ss_pred             ----------------------------------------------hhhhcccceecCCCCCceeccc-cCceeeccchh
Confidence                                                          113566777888 677776655 999999994 2


Q ss_pred             CCc-eeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEe-CcCeEEEEECC
Q 003579          455 SGI-SRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG-YHGDIKVWDFK  504 (809)
Q Consensus       455 ~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~-~dg~i~iwd~~  504 (809)
                      .-+ ......    .........+..+++.|.. ..+++.. ..++|+.+|+.
T Consensus       227 nienpl~~i~----~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  227 NIENPLQIIL----RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hhccHHHHHh----hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            211 111110    0001222358999999954 3455555 45789999875

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.59  E-value=0.041  Score=59.97  Aligned_cols=106  Identities=12%  Similarity=0.166  Sum_probs=60.7

Q ss_pred             EEEEEEecCCCCEEEEEcCCC----cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCC---------cEE
Q 003579          227 VTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------SIK  293 (809)
Q Consensus       227 V~~l~fs~dg~~~lasg~~dg----~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~---------~i~  293 (809)
                      +...+++|||+.++++-+..|    .|+++|+++++.+...-  .......+.|.+++..|+....+.         .-+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            446788999994444444444    59999999997765432  111223499999988776665433         333


Q ss_pred             EEEeeCCCCCceeEEeccCCCCC--CeeEEEecCCCEEEEEEC
Q 003579          294 MWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQ  334 (809)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~~~  334 (809)
                      +|-...++....-...+......  ...+..++|+++++....
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~  246 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS  246 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence            44334443332211222232333  457788889998875443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00032  Score=74.24  Aligned_cols=95  Identities=18%  Similarity=0.273  Sum_probs=83.2

Q ss_pred             ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCee-eEEECCCCCEEEEEeCCCeEEEEEcCCccE
Q 003579          513 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLSSGMDGSLRIWDVILARQ  591 (809)
Q Consensus       513 ~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~-~l~fspdg~~l~s~s~D~~I~vwd~~~~~~  591 (809)
                      .....+..+.|+|.-.++|.+..+|.+.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.+|..
T Consensus        18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            344678889999999999999999999999888 777788887777777 999999999999999999999999999998


Q ss_pred             EEE--eeeCcceEEEEEcC
Q 003579          592 IDA--IHVDVSITALSLSP  608 (809)
Q Consensus       592 i~~--~~~~~~v~~l~~sp  608 (809)
                      +..  +....+|.++.|++
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            887  55666799999973

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.56  E-value=0.11  Score=56.58  Aligned_cols=116  Identities=15%  Similarity=0.190  Sum_probs=71.6

Q ss_pred             EEEEEEcCCCCEEEEEe-CC----CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC----------CCc
Q 003579          184 ISSCVSSPALDVVAVGC-SD----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS----------SGV  248 (809)
Q Consensus       184 I~~l~~sp~~~~la~g~-~d----g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~----------dg~  248 (809)
                      +....+||+++++|.+- ..    ..++++|+++++.+......  .....+.|.+|++.++.+...          ...
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34678999999999763 33    35999999999876643221  122349999998855565532          234


Q ss_pred             EEEEECCCceee--eeeecccccc-eEEEEEecCCCEEEEEcC-CCc-EEEEEeeCCC
Q 003579          249 ISIWNLEKRRLQ--SVIREAHDNA-IISLHFFANEPVLMSASA-DNS-IKMWIFDTTD  301 (809)
Q Consensus       249 I~iwdl~~~~~~--~~~~~~h~~~-V~~l~~~~~~~~l~s~s~-d~~-i~vw~~~~~~  301 (809)
                      |+.|.+.+....  ..+....... ...+..++++++|+.... ..+ -.+|-++...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            888888776433  3333122223 678889999997765433 333 4556555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.54  E-value=0.064  Score=55.69  Aligned_cols=182  Identities=15%  Similarity=0.194  Sum_probs=87.0

Q ss_pred             EEEcCCCCEEEEEe------CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC---------
Q 003579          430 CTISACGNFAVLGT------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---------  494 (809)
Q Consensus       430 v~~s~~g~~l~~g~------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---------  494 (809)
                      +-.-|+|+.++++-      .-|.+.++|-.+..........     .+...--..+-+.|..+.++|+..         
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~-----~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G  209 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKD-----RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKG  209 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB------TT------EEEETTTTEEEE-B---HHHHTT-
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccC-----CCCCCCCCCeEEcCCCCEEEEeccCChhhcccC
Confidence            33445666666532      2256777887776666655421     012233456677888888887642         


Q ss_pred             -----------cCeEEEEECCCCceeeeeecC---CCeEEEEEeeC--CCE--EEEEeCCCeEEEEEcCCCe----EEEE
Q 003579          495 -----------HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRV--NGL--LATVADDLVIRLFDVVALR----MVRK  552 (809)
Q Consensus       495 -----------dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~--~~~--la~~~~d~~I~v~d~~~~~----~~~~  552 (809)
                                 ..++.+||+.+.++++++...   .....+.|..+  ..+  +.++......++|.-+.++    .+..
T Consensus       210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~  289 (461)
T PF05694_consen  210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID  289 (461)
T ss_dssp             --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE
T ss_pred             CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE
Confidence                       357999999999999999887   34556666654  333  3333333333344334332    1222


Q ss_pred             Eec-----C------------CCCeeeEEECCCCCEEEEEe-CCCeEEEEEcCCc---cEEEEeeeCc------------
Q 003579          553 FEG-----H------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA---RQIDAIHVDV------------  599 (809)
Q Consensus       553 ~~~-----h------------~~~I~~l~fspdg~~l~s~s-~D~~I~vwd~~~~---~~i~~~~~~~------------  599 (809)
                      +..     -            ..-|++|..|.|.|+|..+. .+|.||.||+.+-   +++..+....            
T Consensus       290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g  369 (461)
T PF05694_consen  290 IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG  369 (461)
T ss_dssp             E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS--
T ss_pred             CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc
Confidence            211     0            24489999999999997554 8999999999863   3444433221            


Q ss_pred             -----ceEEEEEcCCCCeEEEE
Q 003579          600 -----SITALSLSPNMDVLATA  616 (809)
Q Consensus       600 -----~v~~l~~spdg~~lat~  616 (809)
                           ...-+..|-||+.|..+
T Consensus       370 ~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  370 KRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             ----S----EEE-TTSSEEEEE
T ss_pred             cccCCCCCeEEEccCCeEEEEE
Confidence                 13456666677666655

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=97.45  E-value=0.2  Score=57.04  Aligned_cols=109  Identities=18%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             CEEEEEeCCCeEEEEEeeCCeEEEEEecc--CCCcEEEEEEecCC-----CCEEEEEcCCCcEEEEECCCceeeeeee-c
Q 003579          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHS--MRGAVTALAFSSDG-----QPLLASGASSGVISIWNLEKRRLQSVIR-E  265 (809)
Q Consensus       194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~V~~l~fs~dg-----~~~lasg~~dg~I~iwdl~~~~~~~~~~-~  265 (809)
                      +.++++..+|.+.-+.......+..+..+  ....|.|+++.++.     ..+++.|+.|++++++.+.....+..+. .
T Consensus       550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q  629 (1205)
T KOG1898|consen  550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ  629 (1205)
T ss_pred             eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence            45666666677666665544444444321  24578999998875     2479999999999999988665554443 2


Q ss_pred             ccccceEEEEEec---CC------CEEEEEcCCCcEEEEEeeCCCC
Q 003579          266 AHDNAIISLHFFA---NE------PVLMSASADNSIKMWIFDTTDG  302 (809)
Q Consensus       266 ~h~~~V~~l~~~~---~~------~~l~s~s~d~~i~vw~~~~~~~  302 (809)
                      +-..++.++.+.+   ++      -+|.+|-.+|.+.-..++.-.+
T Consensus       630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G  675 (1205)
T KOG1898|consen  630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTG  675 (1205)
T ss_pred             ccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEeccccc
Confidence            3344555555543   22      2455666666655555555444

>smart00320 WD40 WD40 repeats

Probab=97.41  E-value=0.00048  Score=45.24  Aligned_cols=39  Identities=38%  Similarity=0.841  Sum_probs=35.2

Q ss_pred             CeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      ++....+..|...|.++.|+++++++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677888999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.41  E-value=0.25  Score=52.35  Aligned_cols=91  Identities=15%  Similarity=0.232  Sum_probs=57.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccc-------ccCcc--ccEEEEEEcCC-CC-EEEEE
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS-------NYAHN--GEVVGVACDST-NT-LMISA  492 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~-------~~~h~--~~v~~l~~~~~-~~-~l~s~  492 (809)
                      ...+.+++++|+++++++..+-|.|.++|+.++..++.++......       ...+.  ..-......+. .. +++-+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            4668899999999999999888999999999998887765321110       00000  00000000000 01 33445


Q ss_pred             eCcCeEEEEECCCCceeeeeec
Q 003579          493 GYHGDIKVWDFKGRDLKSRWEV  514 (809)
Q Consensus       493 ~~dg~i~iwd~~~~~~~~~~~~  514 (809)
                      -.-|.|.||.++.+..+..+..
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEEe
Confidence            5679999999999887766654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.40  E-value=0.14  Score=49.45  Aligned_cols=273  Identities=12%  Similarity=0.089  Sum_probs=151.1

Q ss_pred             CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCc-EEEEECCCceeeeeeecccccc--eEEEEEecCCCEEEEEcCC
Q 003579          213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV-ISIWNLEKRRLQSVIREAHDNA--IISLHFFANEPVLMSASAD  289 (809)
Q Consensus       213 ~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~-I~iwdl~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~d  289 (809)
                      |+.+.....  ...-..++|+|....-++.+-.-|+ ..++|....+...++. ..++.  --.-.|+|||.+|...-.|
T Consensus        58 Gk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEnd  134 (366)
T COG3490          58 GKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATEND  134 (366)
T ss_pred             Cceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCC
Confidence            444444443  3455678899887756666665554 5788998887666654 21111  1234689999998876543


Q ss_pred             -----CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEE-EeeecccceecchhhHHHHHhh
Q 003579          290 -----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF-SVIQDQQSRELSQRHVAKRARK  363 (809)
Q Consensus       290 -----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~w-d~~~~~~~~~~~~~~~~~~~~~  363 (809)
                           |.|-+||.+..   ...+-.+..|.-.+..+.+.+||+.++.+.  |-|..- +....+....            
T Consensus       135 fd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld------------  197 (366)
T COG3490         135 FDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD------------  197 (366)
T ss_pred             CCCCCceEEEEecccc---cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh------------
Confidence                 78999988743   244556678888899999999999888764  334433 2111100000            


Q ss_pred             ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee-cceeeecCCCCCCCeEEEEEcCCCCEEEEE
Q 003579          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-GEHILRPCPENPTAVKACTISACGNFAVLG  442 (809)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g  442 (809)
                                                       .-...+.+.+..+..+ .++.+. ...+.-.+..+++.+||+..+-+
T Consensus       198 ---------------------------------sMePSlvlld~atG~liekh~Lp-~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         198 ---------------------------------SMEPSLVLLDAATGNLIEKHTLP-ASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             ---------------------------------hcCccEEEEeccccchhhhccCc-hhhhhcceeeeeeCCCCcEEEEE
Confidence                                             0011122222222222 222222 22344678888999988876654


Q ss_pred             eCCCcE----EEE-ECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe-CcCeEEEEECCCCceeeeeecCC
Q 003579          443 TAGGWI----ERF-NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGC  516 (809)
Q Consensus       443 ~~~g~i----~i~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~  516 (809)
                      --.|.-    -+. -...|+....+ ..+..........|-+++.+.+..+++..+ ..+...+||..++..+..-....
T Consensus       244 Qy~G~~~d~ppLvg~~~~g~~l~~~-~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d  322 (366)
T COG3490         244 QYRGPRNDLPPLVGHFRKGEPLEFL-DLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD  322 (366)
T ss_pred             EeeCCCccCCcceeeccCCCcCccc-CCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence            333211    011 11112222211 111111223445677888887666665555 55667899999998876554331


Q ss_pred             CeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579          517 SLVKIVYHRVNGLLATVADDLVIRLFD  543 (809)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~d~~I~v~d  543 (809)
                         +.-..+...-+++.+.+|.+..+.
T Consensus       323 ---aaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         323 ---AAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             ---cccceeccCceEEecCCceEEecc
Confidence               111223344456666778877763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.40  E-value=0.055  Score=55.16  Aligned_cols=238  Identities=16%  Similarity=0.124  Sum_probs=131.3

Q ss_pred             EEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEE
Q 003579          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR  308 (809)
Q Consensus       229 ~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~  308 (809)
                      +..|.++...++.+--..+.|.-||..+++.....   +.+.+.++.....+..|+++..  .+.+++.+.... .+.+.
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~-~t~~~  102 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGK-ITLLA  102 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCce-eEEec
Confidence            34566777656666667889999998876543332   3344555555555556666543  356666533221 01221


Q ss_pred             ec-cCC-CCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccc
Q 003579          309 FR-SGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (809)
Q Consensus       309 ~~-~~h-~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  386 (809)
                      .. .+. ....+.+...|+|.+-++... .    ++  .+....                                    
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~-~----~~--~~~~~~------------------------------------  139 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGRIWFGDMG-Y----FD--LGKSEE------------------------------------  139 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCCEEEeCCC-c----cc--cCcccc------------------------------------
Confidence            11 111 234567777777765443322 1    11  000000                                    


Q ss_pred             cccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCC--Cceeeeee
Q 003579          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQS--GISRGSYL  463 (809)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~-g~i~i~~~~~--~~~~~~~~  463 (809)
                                ...+  .+|.+...   .........+-.....++|||||+.+++..+. +.|+.|++..  +.....  
T Consensus       140 ----------~~~G--~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~--  202 (307)
T COG3386         140 ----------RPTG--SLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR--  202 (307)
T ss_pred             ----------CCcc--eEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc--
Confidence                      0011  22222210   11111111223556789999999888777665 8899988763  211111  


Q ss_pred             CcccccccCccccEEEEEEcCCCCEEEEEeCcC-eEEEEECCCCceeeeeecC-CCeEEEEEee-CCCEEEEEe
Q 003579          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVA  534 (809)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~  534 (809)
                       ........+.+..-+++++.+|.+.+++..+| .|.+|+-. ++++..+... ..+++++|-- +.+.|.+.+
T Consensus       203 -~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         203 -RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             -ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence             00000123456777899999999887555554 89999988 9999999888 7788888854 334444433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.39  E-value=0.46  Score=55.00  Aligned_cols=110  Identities=14%  Similarity=0.175  Sum_probs=76.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC--------EEEEEEc----------------CCCCEEEEEeCCCeEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS--------ISSCVSS----------------PALDVVAVGCSDGKIHV  207 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~--------I~~l~~s----------------p~~~~la~g~~dg~i~i  207 (809)
                      +.|++++.++.|.-.|.++|+.+.++......        ...+++.                .....|+.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            57999999999999999999999988643211        1112221                13458889999999999


Q ss_pred             EEeeCCeEEEEEeccCCCcE----------------EEEEEecCCCCEEEEEcC----------CCcEEEEECCCceeee
Q 003579          208 HNVRYDEELVTFTHSMRGAV----------------TALAFSSDGQPLLASGAS----------SGVISIWNLEKRRLQS  261 (809)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~V----------------~~l~fs~dg~~~lasg~~----------dg~I~iwdl~~~~~~~  261 (809)
                      .|.++|+.+..+...  +.|                ++--.--++  .+++|+.          +|.|+-+|.++|+++.
T Consensus       275 LDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       275 LDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            999999999876532  111                111111133  4555642          6889999999999988


Q ss_pred             eeec
Q 003579          262 VIRE  265 (809)
Q Consensus       262 ~~~~  265 (809)
                      ....
T Consensus       351 ~~~~  354 (764)
T TIGR03074       351 AWDP  354 (764)
T ss_pred             EEec
Confidence            8763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.38  E-value=0.013  Score=66.38  Aligned_cols=139  Identities=13%  Similarity=0.209  Sum_probs=98.5

Q ss_pred             CCEEEEE-eCcCeEEEEECCCCceeeeeecCCCeEEEEEeeC-------CCEEEEEeCCCeEEEEEcCCC--eEEEE-Ee
Q 003579          486 NTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVAL--RMVRK-FE  554 (809)
Q Consensus       486 ~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~-------~~~la~~~~d~~I~v~d~~~~--~~~~~-~~  554 (809)
                      ..+|+.. .....|+-.|+..|+.+..+..+..+.-..+.|+       +....+|-++..+..||.+-.  +++.. ..
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 3457899999999999999998855544455554       335577888899999998753  33321 11


Q ss_pred             --cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEE-Eee-eCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          555 --GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID-AIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       555 --~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~-~~~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                        ......++++-+.+| +||.||.+|.||+||- .|..-+ .+. ...+|.+|..+.||++|+.++...  +-|.+.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty--LlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTY--LLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecce--EEEEEE
Confidence              133557788888887 6899999999999994 343222 222 356899999999999999888764  777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.35  E-value=0.18  Score=52.61  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=46.8

Q ss_pred             eeeecCCCeEEEEEeeC-------CCEEEEEeCCCeEEEEEcCCCeEEE---E-EecCCCCeeeEEECCCCCEEEEEeCC
Q 003579          510 SRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVALRMVR---K-FEGHTDRITDFCFSEDGKWLLSSGMD  578 (809)
Q Consensus       510 ~~~~~~~~i~~~~~s~~-------~~~la~~~~d~~I~v~d~~~~~~~~---~-~~~h~~~I~~l~fspdg~~l~s~s~D  578 (809)
                      ..+..+..+..+.|.+.       |.++++....+.|....++....+.   . +.....++.++++.|||.+.++.+.+
T Consensus       247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~  326 (331)
T PF07995_consen  247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD  326 (331)
T ss_dssp             EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred             eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence            34445566777777643       4566666667888888887553322   2 22344589999999999998888888


Q ss_pred             CeEE
Q 003579          579 GSLR  582 (809)
Q Consensus       579 ~~I~  582 (809)
                      |.|.
T Consensus       327 G~iy  330 (331)
T PF07995_consen  327 GKIY  330 (331)
T ss_dssp             TTEE
T ss_pred             CeEe
Confidence            8764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.35  E-value=0.0091  Score=49.34  Aligned_cols=96  Identities=24%  Similarity=0.373  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCc
Q 003579          147 PDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGA  226 (809)
Q Consensus       147 p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  226 (809)
                      -++. +.|++|+.|..|++|+  ..+.+.++.. .+.|++++-... ..++.|..+|+|-+|+-  .+.+-..+.  +..
T Consensus        12 ~dg~-~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS--K~~   82 (111)
T PF14783_consen   12 GDGE-NELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS--KNQ   82 (111)
T ss_pred             CCCc-ceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc--CCC
Confidence            3443 7899999999999997  5578888876 567888887776 57999999999999974  334444443  344


Q ss_pred             EEEEEEe---cCCCCEEEEEcCCCcEEE
Q 003579          227 VTALAFS---SDGQPLLASGASSGVISI  251 (809)
Q Consensus       227 V~~l~fs---~dg~~~lasg~~dg~I~i  251 (809)
                      +.++.+.   .||..-|++|-.+|.|-+
T Consensus        83 ~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   83 VTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            6666554   456667999999998753

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.35  E-value=0.016  Score=47.89  Aligned_cols=101  Identities=21%  Similarity=0.314  Sum_probs=71.2

Q ss_pred             EEEEEEe---cCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          227 VTALAFS---SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       227 V~~l~fs---~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      |++|++.   .||..-|++|+.|..|++|+-  ...+..+.  -.+.|+++.-... ..++.+-.+|+|-+|+-  ..  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~--   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ--   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc--
Confidence            5566654   466678999999999999984  46666665  5567888888776 57888999999999953  22  


Q ss_pred             ceeEEeccCCCCCCeeEEEec---CC-CEEEEEECCCCEE
Q 003579          304 PRLLRFRSGHSAPPLCIRFYA---NG-RHILSAGQDRAFR  339 (809)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~---~~-~~l~s~~~dg~i~  339 (809)
                       ++.+....|  .+.++.+..   || ..|++|-.+|.|-
T Consensus        73 -RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 -RLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -eeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             444443333  377777765   22 3688888888763

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.27  E-value=0.048  Score=61.15  Aligned_cols=176  Identities=14%  Similarity=0.087  Sum_probs=98.3

Q ss_pred             CCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEe------CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEe
Q 003579          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS  233 (809)
Q Consensus       160 dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs  233 (809)
                      +|.+.-.+-.....+.-..+....+.+.+++|+|+.+|...      .|+.-.||=...+.....+...  ...+.-.|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWs  405 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWS  405 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceEC
Confidence            66665544322222222223335678999999999888765      2443344443333333444433  248889999


Q ss_pred             cCCCCEEEEEcC------------CCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC-C
Q 003579          234 SDGQPLLASGAS------------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-T  300 (809)
Q Consensus       234 ~dg~~~lasg~~------------dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~-~  300 (809)
                      |||. .+++...            .+.+.+.++..+....    ...+.|..+.|+|||..++... ++.|.+=-+.. .
T Consensus       406 pDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~  479 (591)
T PRK13616        406 LDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE  479 (591)
T ss_pred             CCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence            9987 4544432            2334333444433322    2346799999999999887766 46665533332 3


Q ss_pred             CCCceeE---EeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579          301 DGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       301 ~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  344 (809)
                      .+..++.   ....+-...+..+.|.+++.. +++..++.-.+|.+.
T Consensus       480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~  525 (591)
T PRK13616        480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN  525 (591)
T ss_pred             CCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence            3332221   111233344688999998874 455555544555544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.25  E-value=0.64  Score=53.83  Aligned_cols=116  Identities=15%  Similarity=0.162  Sum_probs=73.5

Q ss_pred             eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCcc--------ccEEEEe--------------CCCCCCEEEEEeC
Q 003579          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF--------TPTCIMH--------------PDTYLNKVIVGSQ  159 (809)
Q Consensus       102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--------------p~~~~~~l~~~~~  159 (809)
                      .++.|+.++.++.|.-.|..+++..    -++......        .....+.              |...-++|++++.
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~l----W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~  268 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEK----WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS  268 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEE----EEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC
Confidence            4778888888888888888887762    221111100        0011111              1111258999999


Q ss_pred             CCeEEEEeCCCCceEEEEcCCCCCEE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEEeeCCe
Q 003579          160 EGSLQLWNISTKKKLYEFKGWGSSIS-------------SCVSSP--ALDVVAVGCS----------DGKIHVHNVRYDE  214 (809)
Q Consensus       160 dg~i~lwd~~~~~~~~~~~~~~~~I~-------------~l~~sp--~~~~la~g~~----------dg~i~iwd~~~~~  214 (809)
                      |+.|.-.|.++|+.+..|.. .+.|.             .+.-+|  .++.+++|+.          +|.|+-+|.++|+
T Consensus       269 Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       269 DARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             CCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            99999999999999988743 22221             112223  2456777743          6899999999999


Q ss_pred             EEEEEecc
Q 003579          215 ELVTFTHS  222 (809)
Q Consensus       215 ~~~~~~~~  222 (809)
                      .+-.+...
T Consensus       348 l~W~~~~g  355 (764)
T TIGR03074       348 LVWAWDPG  355 (764)
T ss_pred             EeeEEecC
Confidence            99888753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.23  E-value=0.082  Score=51.57  Aligned_cols=121  Identities=11%  Similarity=0.132  Sum_probs=87.2

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      ...+.++.|+|+.+ .|.+......-.++=-.+|.++.++...--...-.+.|..++.+.++--.++.+.++.++..+..
T Consensus        85 ~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          85 TANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             cccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            34599999999999 44444555555566666788888887444455678899989988888888999999988766422


Q ss_pred             cee------EEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeee
Q 003579          304 PRL------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       304 ~~~------~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~  345 (809)
                      ...      +..........-.++|.|..+.|+.+-+-.-+.+|.+..
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            111      111112255678899999888999998888899988763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.14  Score=52.23  Aligned_cols=207  Identities=13%  Similarity=0.087  Sum_probs=118.7

Q ss_pred             CCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcC----C-CCCEE
Q 003579          111 IDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG----W-GSSIS  185 (809)
Q Consensus       111 ~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~----~-~~~I~  185 (809)
                      ..+.|.-|+..+++.     ..+..+........+...+    .++++..| +.+++.+++..+..+..    . ...-+
T Consensus        45 ~~~~i~r~~~~~g~~-----~~~~~p~~~~~~~~~d~~g----~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~N  114 (307)
T COG3386          45 LGGRIHRLDPETGKK-----RVFPSPGGFSSGALIDAGG----RLIACEHG-VRLLDPDTGGKITLLAEPEDGLPLNRPN  114 (307)
T ss_pred             CCCeEEEecCCcCce-----EEEECCCCcccceeecCCC----eEEEEccc-cEEEeccCCceeEEeccccCCCCcCCCC
Confidence            356677777765543     3444455554455566555    44554555 77888776666333321    1 23455


Q ss_pred             EEEEcCCCCEEEEEeC---------CCeEEEEEee-CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECC
Q 003579          186 SCVSSPALDVVAVGCS---------DGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (809)
Q Consensus       186 ~l~~sp~~~~la~g~~---------dg~i~iwd~~-~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~  255 (809)
                      .+...|+|.+.+....         ...-.+|-+. .+..+..+..+ -..-+.|+||||++.+.++=+..+.|.-|++.
T Consensus       115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-LTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-EEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            6788899876665433         0112455554 44554444432 34567899999998455554566888888876


Q ss_pred             C--c----eeeeeeecccccceEEEEEecCCCEEEEEcCCC-cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCC
Q 003579          256 K--R----RLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGR  327 (809)
Q Consensus       256 ~--~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~  327 (809)
                      .  +    +........+.+..-.++...+|.+-+++..+| .|..|+.+ .    +++....-....+++++|-. +.+
T Consensus       194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G----~l~~~i~lP~~~~t~~~FgG~~~~  268 (307)
T COG3386         194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G----KLLGEIKLPVKRPTNPAFGGPDLN  268 (307)
T ss_pred             cccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C----cEEEEEECCCCCCccceEeCCCcC
Confidence            2  2    111111112345556677777777665444443 78888554 2    45555555557788888875 445


Q ss_pred             EEEEEE
Q 003579          328 HILSAG  333 (809)
Q Consensus       328 ~l~s~~  333 (809)
                      .|+..+
T Consensus       269 ~L~iTs  274 (307)
T COG3386         269 TLYITS  274 (307)
T ss_pred             EEEEEe
Confidence            555444

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.20  E-value=0.045  Score=61.39  Aligned_cols=183  Identities=14%  Similarity=0.174  Sum_probs=104.4

Q ss_pred             cccEEEEeCCCCCCEEEEEe------CCC--eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--------
Q 003579          139 FTPTCIMHPDTYLNKVIVGS------QEG--SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD--------  202 (809)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~~------~dg--~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d--------  202 (809)
                      ......++|++  ++++...      .++  .|.+++. .+.......+  ...+.-.|+|+|+.|++....        
T Consensus       351 ~vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        351 NITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             CcccceECCCC--CEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            45567799999  6776654      233  4555564 3333222333  348889999999888777532        


Q ss_pred             ----CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE---EECCCceeeee-----eecccccc
Q 003579          203 ----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI---WNLEKRRLQSV-----IREAHDNA  270 (809)
Q Consensus       203 ----g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i---wdl~~~~~~~~-----~~~~h~~~  270 (809)
                          +.+.+.++..++...    ...+.|..+.|||||..++++.  +|.|.+   -....|. ...     +..+-...
T Consensus       426 ~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecccCCc
Confidence                233333333332222    1245799999999999554444  477777   4444453 111     22123344


Q ss_pred             eEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579          271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (809)
Q Consensus       271 V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (809)
                      +.++.|..++.++ .+..++.-.+|.++........+ .-.....++..++=+++  .++....++.
T Consensus       499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        499 AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             cccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCce
Confidence            6889999999855 54555556677766554332221 11123566777776653  4555555653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.015  Score=60.68  Aligned_cols=142  Identities=17%  Similarity=0.211  Sum_probs=100.8

Q ss_pred             CEEE-EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC-------EEEEEeCCCeEEEEEeeCCeE-EEEEecc
Q 003579          152 NKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRYDEE-LVTFTHS  222 (809)
Q Consensus       152 ~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-------~la~g~~dg~i~iwd~~~~~~-~~~~~~~  222 (809)
                      +.|+ .+.....++-.|++.|+.+.+.+-+.. |+-+.+.|+.+       .-++|-.|..|.-||.+-... .....+.
T Consensus       346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            3343 455667799999999999999988766 77788888653       235677889999999873322 2222221


Q ss_pred             C----CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579          223 M----RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (809)
Q Consensus       223 ~----~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~  298 (809)
                      +    .....|.+-..+|  ++|+|+.+|.|++||- .++...+...+-..+|..+..+.+|++++..+ +..+.+-+..
T Consensus       425 kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            1    2355666666666  6999999999999997 55544444448889999999999999887665 4556555543

>smart00320 WD40 WD40 repeats

Probab=97.02  E-value=0.002  Score=42.05  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=35.0

Q ss_pred             CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (809)
Q Consensus       171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd  209 (809)
                      ++++..+..|...|.++.|.+.+.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456777888999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.00  E-value=0.4  Score=46.95  Aligned_cols=183  Identities=12%  Similarity=0.057  Sum_probs=124.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579          425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  502 (809)
                      .....+.+..+|.++-+.+.-|  .|+.+|+.+|+.......       ....--.+++... ++...-.-.++...+||
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-------~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd  116 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-------PPRYFGEGITILG-DKLYQLTWKEGTGFVYD  116 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--------TTT--EEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-------CccccceeEEEEC-CEEEEEEecCCeEEEEc
Confidence            4455677777788777777766  889999999987766542       2222334555543 34445556789999999


Q ss_pred             CCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC-----CCCeeeEEECCCCCEEEEEeC
Q 003579          503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGM  577 (809)
Q Consensus       503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h-----~~~I~~l~fspdg~~l~s~s~  577 (809)
                      ..+.+.+.++.....=+.++  .|++.|+.......++++|.++.+..+++.-.     -..++-+.+- +|...|=.=.
T Consensus       117 ~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~  193 (264)
T PF05096_consen  117 PNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ  193 (264)
T ss_dssp             TTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred             cccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence            99999999998887777777  56788888878889999999988877776532     2346777876 6766665656


Q ss_pred             CCeEEEEEcCCccEEEEeee----------------CcceEEEEEcCCCCeEEEEEe
Q 003579          578 DGSLRIWDVILARQIDAIHV----------------DVSITALSLSPNMDVLATAHV  618 (809)
Q Consensus       578 D~~I~vwd~~~~~~i~~~~~----------------~~~v~~l~~spdg~~lat~~~  618 (809)
                      ...|..-|..+|+.+..+..                ..-.+.+|+.|..+.|..++.
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            67788899999999887742                123889999987776666554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.93  E-value=0.0012  Score=61.47  Aligned_cols=143  Identities=18%  Similarity=0.187  Sum_probs=86.9

Q ss_pred             EEEEeCCCeEEEEeCCCCceEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEE
Q 003579          154 VIVGSQEGSLQLWNISTKKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF  232 (809)
Q Consensus       154 l~~~~~dg~i~lwd~~~~~~~~~~-~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~f  232 (809)
                      +..-+.+|.|.-++++..+.-..- .-|...   ......+.-|++|+.+|.|.+|+..-..............|.++--
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            444557777777776544332211 111111   1222335679999999999999986222211111111233433332


Q ss_pred             ecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccc-cceEEEEEecCCCEEEEE--cCCCcEEEEEeeCC
Q 003579          233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSA--SADNSIKMWIFDTT  300 (809)
Q Consensus       233 s~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~--s~d~~i~vw~~~~~  300 (809)
                      ..+...+..+++.+|.|+.|++.-.+.+...- .|. .++..+..+..+..++.+  |.|..++.|++..-
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            22222288899999999999999888887776 676 566666666666677777  77778888876543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.89  E-value=0.037  Score=58.41  Aligned_cols=89  Identities=12%  Similarity=0.145  Sum_probs=62.7

Q ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-----------------CCC
Q 003579          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-----------------GQP  238 (809)
Q Consensus       176 ~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-----------------g~~  238 (809)
                      .+......+.+++.+|.+++.|+...=|+|.++|+.++..++.+++-....+.-+.-...                 ...
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            344556778999999999988888777999999999998888877643332222222111                 112


Q ss_pred             EEEEEcCCCcEEEEECCCceeeeeee
Q 003579          239 LLASGASSGVISIWNLEKRRLQSVIR  264 (809)
Q Consensus       239 ~lasg~~dg~I~iwdl~~~~~~~~~~  264 (809)
                      +++-+-.-|.|.||++++|..+..+.
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEE
Confidence            34455678999999998887776665

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.85  E-value=0.28  Score=48.02  Aligned_cols=164  Identities=9%  Similarity=0.093  Sum_probs=112.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc
Q 003579          178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (809)
Q Consensus       178 ~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~  257 (809)
                      .+-...++++.|+|+.+.|.+......-.|+=...|+.+.++....-.....+.+..+|+ ++++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence            344566999999999999988888888888877889999998865445667888888887 6666668888988877665


Q ss_pred             eeeeeee--------ccc-ccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCC-------CCCCeeEE
Q 003579          258 RLQSVIR--------EAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-------SAPPLCIR  321 (809)
Q Consensus       258 ~~~~~~~--------~~h-~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-------~~~v~~i~  321 (809)
                      ..+....        ..+ +.+.-.++|.|.+..|+.+-.-+-++++.++..... -.......+       -..+.++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cccccccCcccccceEeeccccce
Confidence            2221111        122 567889999999999999888888888877643211 111111111       23467778


Q ss_pred             Eec-CCCEEEEEECCCCEEEEEe
Q 003579          322 FYA-NGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       322 ~~~-~~~~l~s~~~dg~i~~wd~  343 (809)
                      |++ .+..++-+.+++.+.-.|.
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEec
Confidence            887 4445555555665555554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.84  E-value=0.52  Score=45.75  Aligned_cols=155  Identities=16%  Similarity=0.116  Sum_probs=86.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEE--------ECCCCceeeeeeCcc-c-----cccc--CccccEEEEEEcCCCCE
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERF--------NLQSGISRGSYLDMS-E-----RSNY--AHNGEVVGVACDSTNTL  488 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~--------~~~~~~~~~~~~~~~-~-----~~~~--~h~~~v~~l~~~~~~~~  488 (809)
                      -....+.+.+||+.++++..  -|..-        |+.+.+....+.... .     ..+.  .+.-+|..++..++|+.
T Consensus       162 iGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv  239 (366)
T COG3490         162 IGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV  239 (366)
T ss_pred             cCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE
Confidence            44567788899998888643  22222        333332222222100 0     0112  45667999999999987


Q ss_pred             EEEEeCcCe-----EEEEECCCCceeeeeecC--------CCeEEEEEeeCCCEEEEEeCC-CeEEEEEcCCCeEEEEEe
Q 003579          489 MISAGYHGD-----IKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADD-LVIRLFDVVALRMVRKFE  554 (809)
Q Consensus       489 l~s~~~dg~-----i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d-~~I~v~d~~~~~~~~~~~  554 (809)
                      ++.+-..|.     --+=-...++.+.-+...        .-|-+++.+.+..+++..+-. +...+||..++.++..-.
T Consensus       240 wfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~  319 (366)
T COG3490         240 WFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA  319 (366)
T ss_pred             EEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence            777654432     112223344444444332        567788888877777766654 566789999998875432


Q ss_pred             cCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       555 ~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      -  .....++-  ...-++..+.+|.+..+.
T Consensus       320 l--~daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         320 L--PDAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             c--ccccccee--ccCceEEecCCceEEecc
Confidence            1  11222222  222344555677777774

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.83  E-value=0.97  Score=48.70  Aligned_cols=117  Identities=17%  Similarity=0.227  Sum_probs=76.4

Q ss_pred             cEEEEeCCCCC--CEEEEEeCCCeEEEEeCC-----CCceEEEEcCC---CCC--EEEEEEcCCCCEEEEEeCCCeEEEE
Q 003579          141 PTCIMHPDTYL--NKVIVGSQEGSLQLWNIS-----TKKKLYEFKGW---GSS--ISSCVSSPALDVVAVGCSDGKIHVH  208 (809)
Q Consensus       141 ~~~~~~p~~~~--~~l~~~~~dg~i~lwd~~-----~~~~~~~~~~~---~~~--I~~l~~sp~~~~la~g~~dg~i~iw  208 (809)
                      ..+.|.|....  ..+++.-....|.+|.+.     ++|.+.+-..+   .-+  -..+.|+|....|++-.....-.++
T Consensus        60 ~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~  139 (671)
T PF15390_consen   60 HGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLP  139 (671)
T ss_pred             eeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEee
Confidence            34455554211  245555577889999874     33433332211   111  1357899999999998887777788


Q ss_pred             EeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc
Q 003579          209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (809)
Q Consensus       209 d~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~  257 (809)
                      ++..+.......-...+-|.|.+|.+||+.++++-+..=.-++||-...
T Consensus       140 sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  140 SVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            8886665544444447899999999999966665555667789985544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.78  E-value=0.27  Score=51.23  Aligned_cols=199  Identities=10%  Similarity=0.125  Sum_probs=97.9

Q ss_pred             CEEEEEe-CCCeEEEEeCCC----CceEEEEcC---CC----CCEEEEEEcCCCCEEEEEeC------CCeEEEEEeeCC
Q 003579          152 NKVIVGS-QEGSLQLWNIST----KKKLYEFKG---WG----SSISSCVSSPALDVVAVGCS------DGKIHVHNVRYD  213 (809)
Q Consensus       152 ~~l~~~~-~dg~i~lwd~~~----~~~~~~~~~---~~----~~I~~l~~sp~~~~la~g~~------dg~i~iwd~~~~  213 (809)
                      ++|++.+ ..++|++.|+.+    .++...+..   +.    ..-..+-.-|+|+.++++-.      -|-+.+.|-++.
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            6777766 678999999873    344555432   11    12233444578888887633      266888888888


Q ss_pred             eEEEEEeccC--CCcEEEEEEecCCCCEEEEEcC--------------------CCcEEEEECCCceeeeeeeccccc-c
Q 003579          214 EELVTFTHSM--RGAVTALAFSSDGQPLLASGAS--------------------SGVISIWNLEKRRLQSVIREAHDN-A  270 (809)
Q Consensus       214 ~~~~~~~~~~--~~~V~~l~fs~dg~~~lasg~~--------------------dg~I~iwdl~~~~~~~~~~~~h~~-~  270 (809)
                      +.........  ..--...-|.|..+ +|+|...                    ..++.+||+.+.+.++++..+..+ .
T Consensus       168 ~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             -EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             cccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            8777776542  22345666777655 7776532                    357999999999999999865544 4


Q ss_pred             eEEEEEecCC--CE-EEEEcCCCcEEEEEeeCCCCCceeEEec-------------------cCCCCCCeeEEEecCCCE
Q 003579          271 IISLHFFANE--PV-LMSASADNSIKMWIFDTTDGDPRLLRFR-------------------SGHSAPPLCIRFYANGRH  328 (809)
Q Consensus       271 V~~l~~~~~~--~~-l~s~s~d~~i~vw~~~~~~~~~~~~~~~-------------------~~h~~~v~~i~~~~~~~~  328 (809)
                      ...+.|..+-  .+ ++.+.-..+|..|--+ .++.+...+..                   ..-..-|+.|..+.|.++
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            5678887653  33 3333333444443221 12222211111                   111345789999999998


Q ss_pred             EEEEE-CCCCEEEEEeeecccceec
Q 003579          329 ILSAG-QDRAFRLFSVIQDQQSREL  352 (809)
Q Consensus       329 l~s~~-~dg~i~~wd~~~~~~~~~~  352 (809)
                      |..+. ..|.++.||+......+..
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEE
Confidence            88665 6899999999876655543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.74  E-value=0.66  Score=45.48  Aligned_cols=180  Identities=13%  Similarity=0.072  Sum_probs=115.0

Q ss_pred             EEEEE-e-CCEEEEEeCCC--cEEEEEcCCCccccceeeeEEcCC-ccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Q 003579           97 NLLLL-F-GEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK  171 (809)
Q Consensus        97 ~~l~~-~-g~~l~s~~~dg--~i~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~  171 (809)
                      ..+.+ + |..+-|.+.-|  .|+.+|+.+++.    .....++. -+.-.+....+.   .....-.++...+||.++.
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~----~~~~~l~~~~FgEGit~~~d~---l~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV----LQSVPLPPRYFGEGITILGDK---LYQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSE----EEEEE-TTT--EEEEEEETTE---EEEEESSSSEEEEEETTTT
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE----EEEEECCccccceeEEEECCE---EEEEEecCCeEEEEccccc
Confidence            35666 4 45556666655  599999999987    55555554 333344444332   3334557899999999999


Q ss_pred             ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccC----CCcEEEEEEecCCCCEEEEEcCCC
Q 003579          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----RGAVTALAFSSDGQPLLASGASSG  247 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~V~~l~fs~dg~~~lasg~~dg  247 (809)
                      +.+.++.-. +.=..++  .+++.|+.......++.+|.++.+...++.-..    -..++-|.|. +|. +.|=.-...
T Consensus       121 ~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td  195 (264)
T PF05096_consen  121 KKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTD  195 (264)
T ss_dssp             EEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSS
T ss_pred             eEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCC
Confidence            999888643 3334455  567778888888899999998887777665321    1356667776 676 677666778


Q ss_pred             cEEEEECCCceeeeeeec-----------cc---ccceEEEEEecCCCEEEEEcC
Q 003579          248 VISIWNLEKRRLQSVIRE-----------AH---DNAIISLHFFANEPVLMSASA  288 (809)
Q Consensus       248 ~I~iwdl~~~~~~~~~~~-----------~h---~~~V~~l~~~~~~~~l~s~s~  288 (809)
                      .|...|..+|+....+..           .+   ..-.+.++|.|....|...|.
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            899999999988877641           01   245789999988776555553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.67  Score=45.29  Aligned_cols=234  Identities=12%  Similarity=0.076  Sum_probs=140.3

Q ss_pred             CCCcEEEEEeCCeEEEEECCeEEEEECCee------E-EEEccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccc
Q 003579           56 PKKIRALASYRDYTFAAYGNHIAVVKRAHQ------V-ATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA  128 (809)
Q Consensus        56 ~~~I~~la~~~~~~~~a~g~~i~vw~~~~~------~-~~~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~  128 (809)
                      .+.|.+++...++-+++.|..+.+.|....      . ...-.-.+-+..+.+.+++...+..+.-++|.|+.+.+... 
T Consensus        42 g~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~-  120 (370)
T COG5276          42 GKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPT-  120 (370)
T ss_pred             cCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcc-
Confidence            388999999999999999999766654221      1 11222334556667789999999988999999999877621 


Q ss_pred             eeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc---eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 003579          129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI  205 (809)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i  205 (809)
                      .+..+...   -..-.+.-.+  ++.+++..+.-+.+.|+.+..   +.-.+......-..++.|  |++-.++..|+-+
T Consensus       121 ~~~~lnt~---gyaygv~vsG--n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL  193 (370)
T COG5276         121 LIGFLNTD---GYAYGVYVSG--NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL  193 (370)
T ss_pred             eeccccCC---ceEEEEEecC--CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe
Confidence            12222211   2234455566  788888866668888887543   333333333333455555  6677788889999


Q ss_pred             EEEEeeCCeEEEEEeccC-CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEE-EEecCCCEE
Q 003579          206 HVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISL-HFFANEPVL  283 (809)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~-~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l-~~~~~~~~l  283 (809)
                      .|.|+.......-+..-. ...+.++..+++-. +++...  --+.+-|..+.+....+-.-....+.++ .+.-.+++.
T Consensus       194 ~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~  270 (370)
T COG5276         194 TIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYA  270 (370)
T ss_pred             EEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEcc--cceEEEecCCCCCceEeeccccCCcccccceeccccee
Confidence            999997654322222111 23788888887755 555443  3466777766653333321122222222 222345566


Q ss_pred             EEEcCCCcEEEEEeeCC
Q 003579          284 MSASADNSIKMWIFDTT  300 (809)
Q Consensus       284 ~s~s~d~~i~vw~~~~~  300 (809)
                      ..+..+.-+.+-++..+
T Consensus       271 Yvadga~gl~~idisnp  287 (370)
T COG5276         271 YVADGAKGLPIIDISNP  287 (370)
T ss_pred             eeeccccCceeEeccCC
Confidence            66666666666666544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.71  E-value=0.0049  Score=57.45  Aligned_cols=104  Identities=17%  Similarity=0.205  Sum_probs=71.0

Q ss_pred             CCCEEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEE-EEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC-CCe
Q 003579          485 TNTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRI  560 (809)
Q Consensus       485 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~-~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~-~~I  560 (809)
                      -+..++.|+.+|.|.+|....- ......... ..|.+ +.-..++.+..+++.|+.||.|++.-.+.+.....|. .++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            3567889999999999987721 111111111 22222 3333456688999999999999999998888887787 566


Q ss_pred             eeEEECCCCCEEEEE--eCCCeEEEEEcCC
Q 003579          561 TDFCFSEDGKWLLSS--GMDGSLRIWDVIL  588 (809)
Q Consensus       561 ~~l~fspdg~~l~s~--s~D~~I~vwd~~~  588 (809)
                      ..+..+..+++|+.+  |.|..++.|++..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhh
Confidence            666666666667666  6677777777653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=0.099  Score=54.90  Aligned_cols=137  Identities=10%  Similarity=0.205  Sum_probs=99.2

Q ss_pred             EEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCC-------EEEEEeCCCeEEEEEcCCC-e-EEEEEecCC-
Q 003579          488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVAL-R-MVRKFEGHT-  557 (809)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-------~la~~~~d~~I~v~d~~~~-~-~~~~~~~h~-  557 (809)
                      ++.+++....|+-.|+..|+.+..+..+..|+-+.+.|+.+       .-++|-+|..|.-||.+-. + .+..-++|. 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34455566778889999999999999998888888888754       2356778889999998632 2 233334442 


Q ss_pred             ---CCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEe-e-eCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          558 ---DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       558 ---~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~-~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                         ..-.|.+-..+| +||.||.+|-||+||- .+...++. . ...+|..+..+.||++|+.++..  .+-|-+.
T Consensus       428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t--yLlLi~t  499 (644)
T KOG2395|consen  428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT--YLLLIDT  499 (644)
T ss_pred             ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc--EEEEEEE
Confidence               335566666666 7999999999999997 45444332 2 35579999999999999888766  3666554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.0062  Score=68.79  Aligned_cols=104  Identities=20%  Similarity=0.469  Sum_probs=75.5

Q ss_pred             CCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccc
Q 003579          191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA  270 (809)
Q Consensus       191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~  270 (809)
                      -.+..+++|+..|.+...|....-.-.....+..++|++++|+.+|. +++.|-.+|.|.+||...++..+.+. .|..+
T Consensus        97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap  174 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVIT-EHGAP  174 (1206)
T ss_pred             eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeee-ecCCc
Confidence            34557899999999998887643111122223368999999999999 88889999999999999999988887 56555


Q ss_pred             eEEEE---EecCCCEEEEEcCCCcEEEEEee
Q 003579          271 IISLH---FFANEPVLMSASADNSIKMWIFD  298 (809)
Q Consensus       271 V~~l~---~~~~~~~l~s~s~d~~i~vw~~~  298 (809)
                      .+++-   +..++..++++..-|.  +|...
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            55443   3445557777776665  66543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.53  E-value=1.1  Score=45.50  Aligned_cols=273  Identities=15%  Similarity=0.091  Sum_probs=120.2

Q ss_pred             CCCCcEEEEEeCCeEEEEECCeEEEEE---CCee--EEEEccc---cccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccc
Q 003579           55 LPKKIRALASYRDYTFAAYGNHIAVVK---RAHQ--VATWSRH---SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN  126 (809)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~g~~i~vw~---~~~~--~~~~~~h---~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~  126 (809)
                      ....+..|+|..+..-.+.|..=.+++   -++-  .......   .-...+|.+.++....++..+ +.+--.+.++..
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-~ll~T~DgG~tW   93 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-LLLHTTDGGKTW   93 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-EEEEESSTTSS-
T ss_pred             CCCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-eEEEecCCCCCc
Confidence            456788888875433333444322232   2221  1111111   224667777766665566555 334444444442


Q ss_pred             cceeee-EEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 003579          127 LAPVGH-VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGK  204 (809)
Q Consensus       127 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~la~g~~dg~  204 (809)
                      .. +.. .+.+.......++. +   +.+.+++..|.|+.=. +.|+.-.. ...-.+.+..+.-+++|++++++..-..
T Consensus        94 ~~-v~l~~~lpgs~~~i~~l~-~---~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen   94 ER-VPLSSKLPGSPFGITALG-D---GSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             EE-----TT-SS-EEEEEEEE-T---TEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred             EE-eecCCCCCCCeeEEEEcC-C---CcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence            11 110 01112222122222 2   2344444555443322 33433222 3344678899999999999999877555


Q ss_pred             EEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEEC-CCceeeee--eec-ccccceEEEEEecCC
Q 003579          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSV--IRE-AHDNAIISLHFFANE  280 (809)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl-~~~~~~~~--~~~-~h~~~V~~l~~~~~~  280 (809)
                      ..-||--... -..........|.+|.|+|++. +.+ ....|.|++=+. .....-..  ... ...-.+..++|.+++
T Consensus       168 ~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~  244 (302)
T PF14870_consen  168 YSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN  244 (302)
T ss_dssp             EEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred             EEEecCCCcc-ceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence            6677643221 2222222257899999999987 434 347888888772 22221111  110 123348899999988


Q ss_pred             CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEE
Q 003579          281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (809)
Q Consensus       281 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~w  341 (809)
                      ...++|+. |.+.+ ..|.. ..++..+....-...++.|.|.++.+ -+..+.+|.|.-|
T Consensus       245 ~~wa~gg~-G~l~~-S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~  301 (302)
T PF14870_consen  245 EIWAVGGS-GTLLV-STDGG-KTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY  301 (302)
T ss_dssp             -EEEEEST-T-EEE-ESSTT-SS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred             CEEEEeCC-ccEEE-eCCCC-ccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence            77776664 44432 22222 22222222223455688999986654 4455678876554

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.94  Score=44.30  Aligned_cols=298  Identities=11%  Similarity=0.115  Sum_probs=161.1

Q ss_pred             EEEEEEcCCeEEEEEcCccE------EEEecCCCCCCcEEEEEeCCeEEEEECCe-EEEEECCee---EEE-EccccccE
Q 003579           28 NFVTVSVGKAFHIYNCAKLN------LVLVGPQLPKKIRALASYRDYTFAAYGNH-IAVVKRAHQ---VAT-WSRHSAKV   96 (809)
Q Consensus        28 ~~i~~~~~~~i~iwd~~~~~------~~~~~~~~~~~I~~la~~~~~~~~a~g~~-i~vw~~~~~---~~~-~~~h~~~V   96 (809)
                      ..+-...|.-+.+.|+.+-.      ++.+ -..+.-+..+.++.++.|+|-++. +++.|....   ... .....+--
T Consensus        53 ~ya~v~qG~~l~i~ditn~~~~t~~~l~~~-i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gya  131 (370)
T COG5276          53 AYAYVGQGFILAILDITNVSLQTHDVLLSV-INARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYA  131 (370)
T ss_pred             cccccccCceEeeccccCcccccCcceEEE-EehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceE
Confidence            34444455555555554422      2222 235677788899999999998766 999986432   222 22222445


Q ss_pred             EEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc---e
Q 003579           97 NLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---K  173 (809)
Q Consensus        97 ~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~  173 (809)
                      .++...|++...+.-|.-+.+.|+.+..... ...............+++  +  ++-+++..|+-+.+.|+.+..   .
T Consensus       132 ygv~vsGn~aYVadlddgfLivdvsdpssP~-lagrya~~~~d~~~v~IS--G--n~AYvA~~d~GL~ivDVSnp~sPvl  206 (370)
T COG5276         132 YGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ-LAGRYALPGGDTHDVAIS--G--NYAYVAWRDGGLTIVDVSNPHSPVL  206 (370)
T ss_pred             EEEEecCCEEEEeeccCcEEEEECCCCCCce-eeeeeccCCCCceeEEEe--c--CeEEEEEeCCCeEEEEccCCCCCeE
Confidence            6777899999999877778889998876521 133344444333344443  4  668888888889999997643   2


Q ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE-EEecCCCCEEEEEcCCCcEEEE
Q 003579          174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL-AFSSDGQPLLASGASSGVISIW  252 (809)
Q Consensus       174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l-~fs~dg~~~lasg~~dg~I~iw  252 (809)
                      +.... ....+.++..+++-.+++....  -+.+-|....+....+.......+.++ .|.-.++ +......+.-+.+-
T Consensus       207 i~~~n-~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~-~~Yvadga~gl~~i  282 (370)
T COG5276         207 IGSYN-TGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGE-YAYVADGAKGLPII  282 (370)
T ss_pred             EEEEe-cCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCceEeeccccCCcccccceecccc-eeeeeccccCceeE
Confidence            22222 2347888888888777776543  466777766554444432222333333 2222344 45555556666666


Q ss_pred             ECCCceee---eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579          253 NLEKRRLQ---SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (809)
Q Consensus       253 dl~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (809)
                      |+++..--   ..+. .....-..+..+  +.++..+..+ ...+-+....    +....+.+-...+.+...+-+.+.+
T Consensus       283 disnp~spfl~ss~~-t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~----s~m~~~~g~~ti~~s~~v~~~~q~~  354 (370)
T COG5276         283 DISNPPSPFLSSSLD-TAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPP----SMMDKRPGRPTIGQSCDVSVDTQII  354 (370)
T ss_pred             eccCCCCCchhcccc-CCCccccceEEe--cCeeEeccCC-ceEEEeCCCh----hhcccccCcceEeeecceEEEeeEE
Confidence            76554221   1111 011112222222  2233333333 2222222211    1111111222223333333345577


Q ss_pred             EEEECCCCEEEEEe
Q 003579          330 LSAGQDRAFRLFSV  343 (809)
Q Consensus       330 ~s~~~dg~i~~wd~  343 (809)
                      .+...++.+.+|+.
T Consensus       355 y~~d~~~gl~i~~~  368 (370)
T COG5276         355 YSTDYNGGLSIIEY  368 (370)
T ss_pred             EEeecCCCEEEEEe
Confidence            78888888988875

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.45  E-value=0.83  Score=43.07  Aligned_cols=143  Identities=9%  Similarity=0.144  Sum_probs=88.7

Q ss_pred             cccEEEEEEcCCCCEEEEEeCc---------CeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEE-eCCCeEEEEE
Q 003579          474 NGEVVGVACDSTNTLMISAGYH---------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFD  543 (809)
Q Consensus       474 ~~~v~~l~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~I~v~d  543 (809)
                      +...+.-.++|+|++.+-.-.|         |.++.|-.. ++....+..-.-.+.++|+.+.+.+... +.+..|.-||
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            4456666789999985533332         334444322 2222222222445668888877755544 5577887777


Q ss_pred             --cCCCeE-----EEEEec----CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCC-C
Q 003579          544 --VVALRM-----VRKFEG----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-M  610 (809)
Q Consensus       544 --~~~~~~-----~~~~~~----h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spd-g  610 (809)
                        ..+|..     +..++.    ..-.--.++...+|.+.+++-..++|...|..+|+.+..+..+.+ ++|++|--- -
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~  266 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNL  266 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence              555532     333332    111223466677888888888889999999999999999998876 999999632 2


Q ss_pred             CeEEEEE
Q 003579          611 DVLATAH  617 (809)
Q Consensus       611 ~~lat~~  617 (809)
                      +.|.+..
T Consensus       267 d~~yvT~  273 (310)
T KOG4499|consen  267 DILYVTT  273 (310)
T ss_pred             cEEEEEe
Confidence            3444433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.44  E-value=1  Score=45.03  Aligned_cols=116  Identities=13%  Similarity=0.143  Sum_probs=70.3

Q ss_pred             cEEEEEEecCCCCEEEEEc--CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEee-CCCC
Q 003579          226 AVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD-TTDG  302 (809)
Q Consensus       226 ~V~~l~fs~dg~~~lasg~--~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~-~~~~  302 (809)
                      .+.+.+.++||+.+.++..  ....+.++..  +.......  -...+....|.+++...+....+...+++... ....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            6899999999985555552  3344555543  33333322  22378888999998777776666767776421 1221


Q ss_pred             CceeEEeccCCCCCCeeEEEecCCCEEEEEE---CCCCEEEEEeeec
Q 003579          303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQD  346 (809)
Q Consensus       303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~dg~i~~wd~~~~  346 (809)
                      ....+... .-...|..++++|||..++...   .++.|.+--+..+
T Consensus       101 ~~~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen  101 EPVEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             eeEEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            11222211 1122899999999999888665   3466766665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.37  E-value=0.078  Score=60.67  Aligned_cols=150  Identities=7%  Similarity=-0.015  Sum_probs=97.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeeeCc---ccccccCccccEEEEEEcCCC-CEEEEEeCcCeE
Q 003579          425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDM---SERSNYAHNGEVVGVACDSTN-TLMISAGYHGDI  498 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i  498 (809)
                      ..+..+...+|+.+.++.....  .|+.||+.+-.........   .............++.|.|.- ...+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4566677778887776655444  7888998764333211110   000111223345667777754 335666788999


Q ss_pred             EEEECCCCc-eeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC----CCCeeeEEECCCCCEEE
Q 003579          499 KVWDFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLL  573 (809)
Q Consensus       499 ~iwd~~~~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h----~~~I~~l~fspdg~~l~  573 (809)
                      ++..+.... ....+......++++|+|.|+.+++|-..|++.-|... ++..+.+.+.    ..+|.+++|-..-.||+
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            988776432 33345666889999999999999999999999888643 3444444331    36799999988777777


Q ss_pred             EE
Q 003579          574 SS  575 (809)
Q Consensus       574 s~  575 (809)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            43

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.27  E-value=0.84  Score=43.05  Aligned_cols=142  Identities=13%  Similarity=0.140  Sum_probs=84.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEE-EEeCcCeEEEEE--
Q 003579          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWD--  502 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~i~iwd--  502 (809)
                      ....-.++|+|++ ..|+..-.-..+....|.+..-+...........-+--++++|+.+.+.+. +-+.+-.|.-||  
T Consensus       110 R~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd  188 (310)
T KOG4499|consen  110 RLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD  188 (310)
T ss_pred             ccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence            3444567889988 555443221222222232222222000000001122336788888776554 445667787787  


Q ss_pred             CCCCcee-----eeeec-----CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579          503 FKGRDLK-----SRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (809)
Q Consensus       503 ~~~~~~~-----~~~~~-----~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd  568 (809)
                      ..+|...     ..++.     +...-.+++..+|.+.++....++|..+|..+|+.+.++.-.+..|++++|--.
T Consensus       189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            5555332     11211     122344666778888888889999999999999999999989999999999643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.24  E-value=0.016  Score=39.92  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=30.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE  215 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~  215 (809)
                      ...|.+++|+|..++||+|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            567999999999999999999999999998 4544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.22  E-value=0.53  Score=47.00  Aligned_cols=151  Identities=13%  Similarity=0.095  Sum_probs=92.9

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE-CCCceee
Q 003579          183 SISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQ  260 (809)
Q Consensus       183 ~I~~l~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd-l~~~~~~  260 (809)
                      .+.+.+.+++++.+|... .++.-.+|-...+........  ...++.-+|++++. +.+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCcce
Confidence            788999999999887665 233344444444554444432  34788999999987 666656566666663 3333222


Q ss_pred             e-eee-cccccceEEEEEecCCCEEEEEc---CCCcEEEEEeeCCCCC-ceeE----EeccCCCCCCeeEEEecCCCEEE
Q 003579          261 S-VIR-EAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGD-PRLL----RFRSGHSAPPLCIRFYANGRHIL  330 (809)
Q Consensus       261 ~-~~~-~~h~~~V~~l~~~~~~~~l~s~s---~d~~i~vw~~~~~~~~-~~~~----~~~~~h~~~v~~i~~~~~~~~l~  330 (809)
                      . .+. ..-.+.|..+.++|||..++...   .++.|.+=-+...... +..+    .........+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            1 111 11112899999999999777655   3466666655433222 2222    22223456789999999988777


Q ss_pred             EEECCC
Q 003579          331 SAGQDR  336 (809)
Q Consensus       331 s~~~dg  336 (809)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            665444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.017  Score=65.49  Aligned_cols=101  Identities=17%  Similarity=0.294  Sum_probs=77.7

Q ss_pred             CCCEEEEEeCcCeEEEEECCCCce--eeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee
Q 003579          485 TNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (809)
Q Consensus       485 ~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~  562 (809)
                      .+..++.|+..|.+-..|....-.  ..-.....++++++|+.+|..++.|-.+|.|.+||+..++..+.+..|..+.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            455788888889888888765311  223344589999999999999999999999999999999999998887777665


Q ss_pred             EE---ECCCCCEEEEEeCCCeEEEEEcC
Q 003579          563 FC---FSEDGKWLLSSGMDGSLRIWDVI  587 (809)
Q Consensus       563 l~---fspdg~~l~s~s~D~~I~vwd~~  587 (809)
                      +-   +..++..+.++..-|.  +|.+.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            54   3445667788877775  67653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.11  E-value=2.5  Score=45.14  Aligned_cols=110  Identities=15%  Similarity=0.220  Sum_probs=63.0

Q ss_pred             cCCCCEEEEEcCCCcEEEEECCCceee---eeeecccccceEEEEEec-----CCCEEEEEcCCCcEEEEEeeCCCCC--
Q 003579          234 SDGQPLLASGASSGVISIWNLEKRRLQ---SVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGD--  303 (809)
Q Consensus       234 ~dg~~~lasg~~dg~I~iwdl~~~~~~---~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~d~~i~vw~~~~~~~~--  303 (809)
                      ++++..+++|+..|.++||+...+...   ..+...-..+|..+..-.     +...|+. =.-+.+.+|.+....+.  
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            445558999999999999998654311   112222456777776532     2224444 34567888877544433  


Q ss_pred             ---ceeEEeccCCCCC--CeeEEEec----C-CCEEEEEECCCCEEEEEee
Q 003579          304 ---PRLLRFRSGHSAP--PLCIRFYA----N-GRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       304 ---~~~~~~~~~h~~~--v~~i~~~~----~-~~~l~s~~~dg~i~~wd~~  344 (809)
                         .-.+.....|.-+  ...+++-|    . -.++++-+.||.+.+|+-.
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe  163 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE  163 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence               1122222233322  22333333    2 3578888999999999843

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.08  E-value=1  Score=48.23  Aligned_cols=135  Identities=17%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (809)
Q Consensus       152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l  230 (809)
                      +.+.+|+.+| +..||..+++.++.-.... .+|..+..+-.+ .+.+|+.+| +.+.+.+..+.......-..+.|..+
T Consensus       176 g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll  252 (671)
T COG3292         176 GRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLL  252 (671)
T ss_pred             CcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccccCCCCcchheeee
Confidence            4688898888 8889999998887655443 677777776666 477777766 67777654222222222224556666


Q ss_pred             EEecCCCCEEEEEcCCCcEEEEECCCceeeeeeeccc--ccceEEEEEecCCCEEEEEcCCCcEE
Q 003579          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH--DNAIISLHFFANEPVLMSASADNSIK  293 (809)
Q Consensus       231 ~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~s~d~~i~  293 (809)
                      .=..+|.  +-.|+.+|..+ ..+..+.+......-|  -+.|.++....+|. |-+++.++.++
T Consensus       253 ~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~  313 (671)
T COG3292         253 VQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVR  313 (671)
T ss_pred             ecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEE
Confidence            5555554  66777666443 3444443332222122  23456666555554 44455555443

>PHA02713 hypothetical protein; Provisional

Probab=96.07  E-value=0.37  Score=54.36  Aligned_cols=188  Identities=10%  Similarity=0.063  Sum_probs=92.1

Q ss_pred             CEEEEEeCC------CeEEEEeCCCCceEEEEcCCCCCE-EEEEEcCCCCEEEEEeCCC-----eEEEEEeeCCeEEEEE
Q 003579          152 NKVIVGSQE------GSLQLWNISTKKKLYEFKGWGSSI-SSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTF  219 (809)
Q Consensus       152 ~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~I-~~l~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~  219 (809)
                      ...++|+.+      ..+..||..+.+-. .+..-..+. ......-++.+.++|+.++     .+..||..+++-...-
T Consensus       305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        305 EIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             EEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence            345556543      34778887765421 121111111 1112223567778887654     4788998876533211


Q ss_pred             eccC-CCcEEEEEEecCCCCEEEEEcCC-----------------------CcEEEEECCCceeeeeeecccccceEEEE
Q 003579          220 THSM-RGAVTALAFSSDGQPLLASGASS-----------------------GVISIWNLEKRRLQSVIREAHDNAIISLH  275 (809)
Q Consensus       220 ~~~~-~~~V~~l~fs~dg~~~lasg~~d-----------------------g~I~iwdl~~~~~~~~~~~~h~~~V~~l~  275 (809)
                      .... ......+  .-+|. +.+.|+.+                       ..+..||.++.+-...-...+...-.+++
T Consensus       384 ~mp~~r~~~~~~--~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~  460 (557)
T PHA02713        384 DMPIALSSYGMC--VLDQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV  460 (557)
T ss_pred             CCCcccccccEE--EECCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence            1110 1111122  23566 77777754                       24778888876432221101111111222


Q ss_pred             EecCCCEEEEEcCCC------cEEEEEeeCCC-CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC--CEEEEEeeec
Q 003579          276 FFANEPVLMSASADN------SIKMWIFDTTD-GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQD  346 (809)
Q Consensus       276 ~~~~~~~l~s~s~d~------~i~vw~~~~~~-~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~i~~wd~~~~  346 (809)
                       .-++.+.+.||.++      .+..|  +... ..+..+............+.+  +|+..++||.++  ++..||..++
T Consensus       461 -~~~~~IYv~GG~~~~~~~~~~ve~Y--dp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        461 -SHKDDIYVVCDIKDEKNVKTCIFRY--NTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             -EECCEEEEEeCCCCCCccceeEEEe--cCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence             33566667776542      23445  4443 345544444333332222332  678888998888  6667776655


Q ss_pred             cc
Q 003579          347 QQ  348 (809)
Q Consensus       347 ~~  348 (809)
                      +-
T Consensus       536 ~W  537 (557)
T PHA02713        536 EW  537 (557)
T ss_pred             cc
Confidence            43

>PHA02713 hypothetical protein; Provisional

Probab=96.01  E-value=0.52  Score=53.14  Aligned_cols=214  Identities=12%  Similarity=0.107  Sum_probs=105.5

Q ss_pred             eEEEEEcCccEEEEecCCCCCC--cEEEEEeCCeEEEEECCe--------EEEEECCeeEEE----EccccccEEEEEEe
Q 003579           37 AFHIYNCAKLNLVLVGPQLPKK--IRALASYRDYTFAAYGNH--------IAVVKRAHQVAT----WSRHSAKVNLLLLF  102 (809)
Q Consensus        37 ~i~iwd~~~~~~~~~~~~~~~~--I~~la~~~~~~~~a~g~~--------i~vw~~~~~~~~----~~~h~~~V~~l~~~  102 (809)
                      .+..||..+.+-....+ .+.+  =.+++...+.+|++.|..        +..||.....-.    +............+
T Consensus       273 ~v~~yd~~~~~W~~l~~-mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        273 CILVYNINTMEYSVIST-IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             CEEEEeCCCCeEEECCC-CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            57789998876544332 2222  245666677888877631        667775332111    11111122233345


Q ss_pred             CCEEEEEeCCC-----cEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC-----------------
Q 003579          103 GEHILSIDIDG-----NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----------------  160 (809)
Q Consensus       103 g~~l~s~~~dg-----~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----------------  160 (809)
                      |...+.|+.++     ++..||..+.+-.  .+..+......  ..+..-++  ...++|+.+                 
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~--~~~~mp~~r~~--~~~~~~~g--~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWK--MLPDMPIALSS--YGMCVLDQ--YIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEE--ECCCCCccccc--ccEEEECC--EEEEEeCCCccccccccccccccccc
Confidence            66556666553     3788887765321  11111111111  11222244  344455543                 


Q ss_pred             ------CeEEEEeCCCCce--EEEEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEEeeC-CeE--EEEEeccC
Q 003579          161 ------GSLQLWNISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRY-DEE--LVTFTHSM  223 (809)
Q Consensus       161 ------g~i~lwd~~~~~~--~~~~~~~~~~I~~l~~sp~~~~la~g~~d------g~i~iwd~~~-~~~--~~~~~~~~  223 (809)
                            ..+..||..+.+=  +..+..  ......+..-+++..++|+.+      ..+..||..+ ++-  +..+... 
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-  502 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR-  502 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-
Confidence                  2467777766532  111111  111111223345666667654      2467899887 443  2333221 


Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCC--cEEEEECCCceeeeee
Q 003579          224 RGAVTALAFSSDGQPLLASGASSG--VISIWNLEKRRLQSVI  263 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg--~I~iwdl~~~~~~~~~  263 (809)
                      ........+  +|+ +.++|+.+|  .+..||..+.+-...-
T Consensus       503 r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        503 LSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             cccceeEEE--CCE-EEEEeeecceeehhhcCcccccccchh
Confidence            122222222  566 888998887  7778888777654433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.00  E-value=0.28  Score=52.24  Aligned_cols=142  Identities=14%  Similarity=0.141  Sum_probs=82.8

Q ss_pred             ccEEEEEEcCCCCEEEEEe-----------CcC-eEEEEECCC--Cce--eeeeec-CCCeEEEEEeeCCCEEEEEeCCC
Q 003579          475 GEVVGVACDSTNTLMISAG-----------YHG-DIKVWDFKG--RDL--KSRWEV-GCSLVKIVYHRVNGLLATVADDL  537 (809)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~d~  537 (809)
                      .....++|+++|+++++..           ..+ .|.+++-..  ++.  ...+.. -.....+++.+++  |.+++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4567899999999887753           223 677776442  322  122222 2456889999888  44444444


Q ss_pred             eEEEEEcCC-------CeE-EEEEec----CCCCeeeEEECCCCCEEEEEeCC-------------------CeEEEEEc
Q 003579          538 VIRLFDVVA-------LRM-VRKFEG----HTDRITDFCFSEDGKWLLSSGMD-------------------GSLRIWDV  586 (809)
Q Consensus       538 ~I~v~d~~~-------~~~-~~~~~~----h~~~I~~l~fspdg~~l~s~s~D-------------------~~I~vwd~  586 (809)
                      ..++.|...       .+. +..+..    +......++|.|||++.++-+..                   |.|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333445432       122 222322    23457889999999877655421                   34555555


Q ss_pred             CCccEEEEee-eCcceEEEEEcCCCCeEEEEEeC
Q 003579          587 ILARQIDAIH-VDVSITALSLSPNMDVLATAHVD  619 (809)
Q Consensus       587 ~~~~~i~~~~-~~~~v~~l~~spdg~~lat~~~d  619 (809)
                      .+++. ..+. .......++|+|+|+++++-..+
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence            54443 3332 33347899999999988775543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.99  E-value=2.5  Score=44.20  Aligned_cols=272  Identities=10%  Similarity=0.039  Sum_probs=131.9

Q ss_pred             CCCcEEEEEeCCeEEEEECCeEEEEE---CCeeEEE----EccccccEEEEEEeCCEEEEEeCCCcEEEEEcCC-Ccccc
Q 003579           56 PKKIRALASYRDYTFAAYGNHIAVVK---RAHQVAT----WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKG-IEENL  127 (809)
Q Consensus        56 ~~~I~~la~~~~~~~~a~g~~i~vw~---~~~~~~~----~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~-~~~~~  127 (809)
                      ...+.+|+|..+..-.|.|..=.||.   -++-=..    +.....++.++.+.++....++..|.|.  .... ++...
T Consensus        45 ~~~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~g~i~--~S~DgG~tW~  122 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQPSLLL--HTTDGGKNWT  122 (334)
T ss_pred             CCceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCCceEE--EECCCCCCCe
Confidence            56788888876545445555534442   2221111    1112334667777655444445555433  3333 33211


Q ss_pred             ceeeeE-EcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 003579          128 APVGHV-KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKI  205 (809)
Q Consensus       128 ~~~~~~-~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~la~g~~dg~i  205 (809)
                       .+..- ..........++.+ .   .+..++..|.|..=+ ..|+.-..+. .....+..+.+.|++.+++++. .|.+
T Consensus       123 -~~~~~~~~~~~~~~i~~~~~-~---~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i  195 (334)
T PRK13684        123 -RIPLSEKLPGSPYLITALGP-G---TAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNF  195 (334)
T ss_pred             -EccCCcCCCCCceEEEEECC-C---cceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceE
Confidence             11100 01111111122222 2   233334445443222 2333322222 2246788999999987776665 4544


Q ss_pred             EEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeec---ccccceEEEEEecCCCE
Q 003579          206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE---AHDNAIISLHFFANEPV  282 (809)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~---~h~~~V~~l~~~~~~~~  282 (809)
                      ..-.-..++.-..........++++.+.++++ ++++| ..|.+++=..+.+..-.....   .....+.++.+.+++..
T Consensus       196 ~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~  273 (334)
T PRK13684        196 YSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI  273 (334)
T ss_pred             EEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence            32111222333333334456899999999998 55555 467665433344432221110   12245788899987765


Q ss_pred             EEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (809)
Q Consensus       283 l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd  342 (809)
                      ++ ++.+|.+.. ..+.. ..++......+-....+.+.|..+++. +..+..|.|..++
T Consensus       274 ~~-~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~  329 (334)
T PRK13684        274 WA-GGGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYV  329 (334)
T ss_pred             EE-EcCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEec
Confidence            54 555675543 22222 222332221222345777888766655 4456678777665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.89  E-value=3  Score=44.36  Aligned_cols=65  Identities=11%  Similarity=0.013  Sum_probs=35.2

Q ss_pred             cceEEEEEecCCCEEEEEcC-----------CC-cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECC
Q 003579          269 NAIISLHFFANEPVLMSASA-----------DN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (809)
Q Consensus       269 ~~V~~l~~~~~~~~l~s~s~-----------d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d  335 (809)
                      .....|+|.++|+++++-..           .+ .|.+++-...++.......+......+..+++.++|  |+++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            34667888888887766431           12 455553222233322223333334467889999888  4444444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.88  E-value=0.82  Score=51.50  Aligned_cols=96  Identities=11%  Similarity=0.118  Sum_probs=53.8

Q ss_pred             EEEEEcCC------CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC-Cc---EEEEEeeCCCCCceeEE
Q 003579          239 LLASGASS------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NS---IKMWIFDTTDGDPRLLR  308 (809)
Q Consensus       239 ~lasg~~d------g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-~~---i~vw~~~~~~~~~~~~~  308 (809)
                      +++.|+..      ..+..+|..++.-.......+...-.+++.. ++.+.++||.| |.   -.+|.++.....+..+.
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a  365 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA  365 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccC
Confidence            77777766      3678899888744333332233344455555 44677888888 32   23555565555554433


Q ss_pred             eccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579          309 FRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (809)
Q Consensus       309 ~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (809)
                      ..............  +|...++||.||.
T Consensus       366 ~M~~~R~~~~v~~l--~g~iYavGG~dg~  392 (571)
T KOG4441|consen  366 PMNTKRSDFGVAVL--DGKLYAVGGFDGE  392 (571)
T ss_pred             CccCccccceeEEE--CCEEEEEeccccc
Confidence            33222222211111  6778888988864

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.58  E-value=0.4  Score=53.37  Aligned_cols=112  Identities=11%  Similarity=0.120  Sum_probs=76.7

Q ss_pred             CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-cCCCCeeeEEE--CCCCCEEEEEeCCCeEEEEEc------
Q 003579          516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDV------  586 (809)
Q Consensus       516 ~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-~h~~~I~~l~f--spdg~~l~s~s~D~~I~vwd~------  586 (809)
                      ..+.-+.-+.-++..++-++...+.|||...+....+-. ...+.|.++.|  .|||+.+++.|..+.|.+|--      
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344445555555555555566789999999887533322 35688999988  469999999999999999843      


Q ss_pred             ---CCccEEEEeee----CcceEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579          587 ---ILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (809)
Q Consensus       587 ---~~~~~i~~~~~----~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (809)
                         ++-..+..+..    +.+|.+..|.++|.+++.++.   .++|++-.-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN---qlfv~dk~~  157 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN---QLFVFDKWL  157 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC---EEEEECCCc
Confidence               22234444432    246999999999977766532   488887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.57  E-value=3.6  Score=42.96  Aligned_cols=68  Identities=12%  Similarity=0.156  Sum_probs=41.7

Q ss_pred             CCCCeeeEEECC-------CCCEEEEEeCCCeEEEEEcCCccEEE-Eee----eCcceEEEEEcCCCCeEEEEEeCCCeE
Q 003579          556 HTDRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQID-AIH----VDVSITALSLSPNMDVLATAHVDQNGV  623 (809)
Q Consensus       556 h~~~I~~l~fsp-------dg~~l~s~s~D~~I~vwd~~~~~~i~-~~~----~~~~v~~l~~spdg~~lat~~~d~~~i  623 (809)
                      +...++.+.|-.       +|.++++.-..+.|....+..+..+. .-.    ....+..+++.|||.+.++...++. |
T Consensus       251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~-i  329 (331)
T PF07995_consen  251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGK-I  329 (331)
T ss_dssp             TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTT-E
T ss_pred             CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCe-E
Confidence            335567777753       45567666666778877876443332 211    1225999999999999988887774 5


Q ss_pred             E
Q 003579          624 Y  624 (809)
Q Consensus       624 ~  624 (809)
                      +
T Consensus       330 y  330 (331)
T PF07995_consen  330 Y  330 (331)
T ss_dssp             E
T ss_pred             e
Confidence            3

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.43  E-value=0.77  Score=51.68  Aligned_cols=150  Identities=13%  Similarity=0.194  Sum_probs=97.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeee------eeCcccc--------cccCccccEEEEEEcC--CCCEEEEEeCcCeEE
Q 003579          436 GNFAVLGTAGGWIERFNLQSGISRGS------YLDMSER--------SNYAHNGEVVGVACDS--TNTLMISAGYHGDIK  499 (809)
Q Consensus       436 g~~l~~g~~~g~i~i~~~~~~~~~~~------~~~~~~~--------~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i~  499 (809)
                      +++++++. .+.|.+|+.........      +...+..        ........|+.+.+..  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            77888865 78899999865443221      1100000        0011234466666554  447899999999999


Q ss_pred             EEECCC-------C-------------ceeeeeecCCCeEEEEEe--eCCCEEEEEeCCCeEEEEEcCCC--eE-EEEEe
Q 003579          500 VWDFKG-------R-------------DLKSRWEVGCSLVKIVYH--RVNGLLATVADDLVIRLFDVVAL--RM-VRKFE  554 (809)
Q Consensus       500 iwd~~~-------~-------------~~~~~~~~~~~i~~~~~s--~~~~~la~~~~d~~I~v~d~~~~--~~-~~~~~  554 (809)
                      +|.+++       .             ++...+..+...++++++  ...++||+++....|.||-....  +. ...-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            996521       0             122334456789999999  88899999999998888865432  11 11111


Q ss_pred             cCCCCeeeEEECCCC---C---EEEEEeCCCeEEEEEc
Q 003579          555 GHTDRITDFCFSEDG---K---WLLSSGMDGSLRIWDV  586 (809)
Q Consensus       555 ~h~~~I~~l~fspdg---~---~l~s~s~D~~I~vwd~  586 (809)
                      .|...|-+++|-++.   .   +|++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            256779999997643   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.35  E-value=0.013  Score=64.83  Aligned_cols=157  Identities=17%  Similarity=0.203  Sum_probs=97.4

Q ss_pred             CccccEEEEEEcCCC-CEEEEEeCcCeEEEEECC--CCceeeeeec------CCCeEEEEEee---CCCEEEEEeCCCeE
Q 003579          472 AHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK--GRDLKSRWEV------GCSLVKIVYHR---VNGLLATVADDLVI  539 (809)
Q Consensus       472 ~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~--~~~~~~~~~~------~~~i~~~~~s~---~~~~la~~~~d~~I  539 (809)
                      +..+.|-.++|.... ..+.  -.-|.+.+|++.  .|++...+..      +..+..+.|.|   +..++.++..++.|
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI  207 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence            666777777775322 1111  233678889875  4544443322      24445555554   56788888889999


Q ss_pred             EEEEcCCCeEEEEEecCCCCeeeEE-----------ECCCCCEEEEEeCCCeEEEEEcC-Cc----cEEEEeeeCcc---
Q 003579          540 RLFDVVALRMVRKFEGHTDRITDFC-----------FSEDGKWLLSSGMDGSLRIWDVI-LA----RQIDAIHVDVS---  600 (809)
Q Consensus       540 ~v~d~~~~~~~~~~~~h~~~I~~l~-----------fspdg~~l~s~s~D~~I~vwd~~-~~----~~i~~~~~~~~---  600 (809)
                      ++....+... .-+.+|..++++++           .||||..++.++.||.++.|-+. +|    +|+..++.|..   
T Consensus       208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~  286 (1283)
T KOG1916|consen  208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR  286 (1283)
T ss_pred             eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence            9887765432 44566888777665           58999999999999999988653 22    33444443432   


Q ss_pred             eEEEEEcCC---------CCeEEEEEeCCCeEEEeecCccc
Q 003579          601 ITALSLSPN---------MDVLATAHVDQNGVYLWVNRCMF  632 (809)
Q Consensus       601 v~~l~~spd---------g~~lat~~~d~~~i~lW~~~~~~  632 (809)
                      |..+ +...         -.+++++..-+..+++|.-...-
T Consensus       287 vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~  326 (1283)
T KOG1916|consen  287 VCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ  326 (1283)
T ss_pred             eeee-eccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence            3333 3321         23577777767789999864433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.31  E-value=5.4  Score=43.31  Aligned_cols=150  Identities=13%  Similarity=0.136  Sum_probs=87.6

Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC----CCEEEEEcCCCcEEEEECC
Q 003579          182 SSISSCVSSPALDVVAVGC--SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG----QPLLASGASSGVISIWNLE  255 (809)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg----~~~lasg~~dg~I~iwdl~  255 (809)
                      .+|..++|..-.+++.+.-  .+|.+++=|   .+.+..|     ..|..++|.|-+    ..+||+- ....|.+|.+.
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLC   90 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEEe-ccceEEEEEec
Confidence            4677888875545555543  234433322   1233333     358999999853    3356654 57799999875


Q ss_pred             C-----ceeeeeeeccc--cc--ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC
Q 003579          256 K-----RRLQSVIREAH--DN--AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (809)
Q Consensus       256 ~-----~~~~~~~~~~h--~~--~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~  326 (809)
                      -     ++.+....-..  .-  --.++.|+|....|+.-.....-.+.++...+.  +..... ...+-|.|.+|..||
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi-~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADI-KTSGLIHCACWTKDG  167 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEec-cCCceEEEEEecCcC
Confidence            2     23322221011  11  134678999998887766554444555554432  333333 556779999999999


Q ss_pred             CEEEEEECC-CCEEEEEe
Q 003579          327 RHILSAGQD-RAFRLFSV  343 (809)
Q Consensus       327 ~~l~s~~~d-g~i~~wd~  343 (809)
                      +.|+.+-.. =.-++||-
T Consensus       168 ~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             CEEEEEeCCeEEEEEecC
Confidence            998876443 23466764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.26  E-value=0.059  Score=37.15  Aligned_cols=36  Identities=8%  Similarity=0.122  Sum_probs=30.8

Q ss_pred             eecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCe
Q 003579          512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  548 (809)
Q Consensus       512 ~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~  548 (809)
                      ......|..++|+|...++|.+..+|.|.++.+ +++
T Consensus         8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen    8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            344577999999999999999999999999988 443

>PRK13684 Ycf48-like protein; Provisional

Probab=95.23  E-value=4.7  Score=42.18  Aligned_cols=149  Identities=13%  Similarity=0.086  Sum_probs=85.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      ..+..+.+.+++.++++|. .|.+..-.-..+..-....       ..-...++++.+.++++.++.+ ..|.+++=...
T Consensus       173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~-------~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d  243 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ-------RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD  243 (334)
T ss_pred             ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee-------CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence            5678888999887766554 4544432111222111111       1344678999999998876654 55776543334


Q ss_pred             CCceeeeeec-----CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe---cCCCCeeeEEECCCCCEEEEEe
Q 003579          505 GRDLKSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       505 ~~~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg~~l~s~s  576 (809)
                      .+..-.....     ...+..+.+.+++..++++ .+|.+. .....++.-....   +-....+.+.|..+++.++ ++
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G  320 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LG  320 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-EC
Confidence            4433222221     2457788899887766655 566554 3344444333332   2224577888887777666 45


Q ss_pred             CCCeEEEEE
Q 003579          577 MDGSLRIWD  585 (809)
Q Consensus       577 ~D~~I~vwd  585 (809)
                      ..|.|.-|+
T Consensus       321 ~~G~il~~~  329 (334)
T PRK13684        321 QRGVLLRYV  329 (334)
T ss_pred             CCceEEEec
Confidence            578887775

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.14  E-value=5.9  Score=42.79  Aligned_cols=475  Identities=14%  Similarity=0.103  Sum_probs=217.5

Q ss_pred             CCcEEEEEeCC-eEEEEECCeEEEEECCeeEEEEccccccEEEEEEeCCEEE-EEeCCCcEEEEEcCCCccccceeeeEE
Q 003579           57 KKIRALASYRD-YTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHIL-SIDIDGNMFIWAFKGIEENLAPVGHVK  134 (809)
Q Consensus        57 ~~I~~la~~~~-~~~~a~g~~i~vw~~~~~~~~~~~h~~~V~~l~~~g~~l~-s~~~dg~i~vWd~~~~~~~~~~~~~~~  134 (809)
                      .-|.+|+...| +.++|+-..+.-|+-..-...+.+|  ++..+.+++..++ .....|.|.+=....-..     ....
T Consensus        40 nv~~~~~q~~dGylW~at~~G~vrY~g~~~f~vf~gn--~~~~ly~~gtr~Ll~s~~~gll~lga~~~~d~-----~q~y  112 (671)
T COG3292          40 NVVRAMLQDADGYLWLATSDGLVRYDGPNDFGVFPGN--SVLGLYPDGTRLLLVSSENGLLALGALGRRDF-----IQVY  112 (671)
T ss_pred             HHHHHHhhccCCcEEEEecccEEEecCCcccccccCC--ceEEEecCcceEEeeeccchhhhhccccceec-----eeec
Confidence            45677777776 6777776666666543333445554  4677777665443 333444443333221111     1110


Q ss_pred             cCCccccEEEEeCCCCC----CEEEEEeCCCeEEEEeCCCCceEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 003579          135 LDDKFTPTCIMHPDTYL----NKVIVGSQEGSLQLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVH  208 (809)
Q Consensus       135 ~~~~~~~~~~~~p~~~~----~~l~~~~~dg~i~lwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~la~g~~dg~i~iw  208 (809)
                       -.+...+...|+.+-+    ..+-....+..+..-|....+.+....  .-..+|.++.+.-+| .+-+|+.|| +..|
T Consensus       113 -r~~~~~s~a~h~lt~lIddaqllw~~~~~~gV~~~d~lg~~~v~~~r~ll~d~~V~aLv~D~~g-~lWvgT~dG-L~~f  189 (671)
T COG3292         113 -RGGVAKSDALHELTALIDDAQLLWLHASVIGVDSADALGREAVKDVRPLLKDTPVVALVFDANG-RLWVGTPDG-LSYF  189 (671)
T ss_pred             -ccceeeccCccccccccchhhhhhhccccCCccccccchhhhccCccccccCccceeeeeeccC-cEEEecCCc-ceEE
Confidence             1111112222222210    011111122223222322222221111  125678888888877 567788777 6778


Q ss_pred             EeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC
Q 003579          209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (809)
Q Consensus       209 d~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  288 (809)
                      |..+++.+..-......+|..+.-+-.|+  |.+|+.+| |.+.+.+..+.......-..+.|..+.-..+| .+-.|+.
T Consensus       190 d~~~gkalql~s~~~dk~I~al~~d~qg~--LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTe  265 (671)
T COG3292         190 DAGRGKALQLASPPLDKAINALIADVQGR--LWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTE  265 (671)
T ss_pred             ccccceEEEcCCCcchhhHHHHHHHhcCc--EEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeec
Confidence            88888877776655446788888877887  77788665 77777665333222221122233333222222 3333444


Q ss_pred             CCcEEEEEeeCCCCCc-eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccch
Q 003579          289 DNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (809)
Q Consensus       289 d~~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  367 (809)
                      .|-   |....+.... .+.....--...|.++....+|. +-+++.+|.+++-...                       
T Consensus       266 nGl---~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-----------------------  318 (671)
T COG3292         266 NGL---WRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTAD-----------------------  318 (671)
T ss_pred             ccc---eeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecch-----------------------
Confidence            332   2222221111 11111111122344454444553 4555555544432210                       


Q ss_pred             hhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003579          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW  447 (809)
Q Consensus       368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~  447 (809)
                                           |-........                      ++.......++..-.+..+-...+.|.
T Consensus       319 ---------------------w~~ma~in~~----------------------dG~v~~~~~~a~~ll~~~v~~~ns~g~  355 (671)
T COG3292         319 ---------------------WKRMAVINDS----------------------DGGVSQYEAVAPALLSWGVRQLNSIGE  355 (671)
T ss_pred             ---------------------hhheeeeecC----------------------CCchhhhhccCchhcccceeeccccce
Confidence                                 0000000000                      000000011111112222233333344


Q ss_pred             EEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC-Cceeeeeec--CCCeEEEEEe
Q 003579          448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEV--GCSLVKIVYH  524 (809)
Q Consensus       448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~--~~~i~~~~~s  524 (809)
                      +.+-+-.+|.......       ......|+.++++.++++-+ ++...-+..|+-++ +........  .+++..+.-.
T Consensus       356 L~van~stG~~v~sv~-------q~Rg~nit~~~~d~~g~lWl-gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived  427 (671)
T COG3292         356 LMVANGSTGELVRSVH-------QLRGMNITTTLEDSRGRLWL-GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVED  427 (671)
T ss_pred             EEEecCCCCcEEEEee-------eccccccchhhhccCCcEEE-EecccchhhhccCCcccccccccCCcccceeeeeec
Confidence            4444555555444332       13345677777777555444 44443344555555 322222222  2778888888


Q ss_pred             eCCCEEEEEeCCCeEEEEEcCCCeEEEEEe--cC---CCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCc
Q 003579          525 RVNGLLATVADDLVIRLFDVVALRMVRKFE--GH---TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV  599 (809)
Q Consensus       525 ~~~~~la~~~~d~~I~v~d~~~~~~~~~~~--~h---~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~  599 (809)
                      |+++ |-.|+.+|.++. +.+.++....+.  .|   .+.|..+..-|+|+.-+.++ +| |..|+-......-.+....
T Consensus       428 ~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~~~~~~~l~~~~  503 (671)
T COG3292         428 PDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQRRMFVPILDLTG  503 (671)
T ss_pred             CCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccccceecccccccc
Confidence            8888 777888876654 334433333222  22   24577889999998544332 44 6778765432222222211


Q ss_pred             ceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          600 SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       600 ~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      .-.-..+--.++++-.+-.-+  +.-|.+.
T Consensus       504 q~qy~f~~~~~d~vw~~~~Rg--~vr~r~s  531 (671)
T COG3292         504 QRQYSFVPVGGDEVWVHRLRG--LVRWRHS  531 (671)
T ss_pred             eeeEEEEEccCceEeeeeece--eeeeccC
Confidence            111111333556665554333  5556554

>PRK10115 protease 2; Provisional

Probab=95.11  E-value=8.8  Score=44.61  Aligned_cols=59  Identities=14%  Similarity=0.097  Sum_probs=38.5

Q ss_pred             cEEEEEEecCCCCEEEEE-cCCC----cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC
Q 003579          226 AVTALAFSSDGQPLLASG-ASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (809)
Q Consensus       226 ~V~~l~fs~dg~~~lasg-~~dg----~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~  288 (809)
                      .+..+.++|||+ +|+.+ +.+|    .|++.|+.++..+.... ...  -..++|.+|++.|+.+..
T Consensus       128 ~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        128 TLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEe
Confidence            567788999999 55543 3333    68899998886433222 111  256999999886665544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=0.62  Score=48.24  Aligned_cols=141  Identities=16%  Similarity=0.230  Sum_probs=92.3

Q ss_pred             EeCCCeEEEEEee--CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeec---ccccceEE
Q 003579          199 GCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE---AHDNAIIS  273 (809)
Q Consensus       199 g~~dg~i~iwd~~--~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~---~h~~~V~~  273 (809)
                      +...|.+.=|-.+  .+.....+....+|+|.++.|++|.+ ++|+--.+..|.+++....+.......   ..+..|.+
T Consensus        39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlG  117 (657)
T KOG2377|consen   39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILG  117 (657)
T ss_pred             EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEE
Confidence            3334555555554  23445566666678999999999999 999999999999999844332222111   23456889


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE--CCCCEEEEEeee
Q 003579          274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG--QDRAFRLFSVIQ  345 (809)
Q Consensus       274 l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~  345 (809)
                      ..|+.+. -++..+. .-+-+|......   +.++....|...|.-..|.++.+.++-++  ..+++.-+-+++
T Consensus       118 F~W~~s~-e~A~i~~-~G~e~y~v~pek---rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  118 FCWTSST-EIAFITD-QGIEFYQVLPEK---RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             EEEecCe-eEEEEec-CCeEEEEEchhh---hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            9998764 4444443 347788766554   45666678889999999999887655444  344444444443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.83  E-value=2  Score=47.77  Aligned_cols=195  Identities=14%  Similarity=0.182  Sum_probs=106.0

Q ss_pred             EEEEEC-CeeEEEEccccccEEEEEEe-CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEE
Q 003579           77 IAVVKR-AHQVATWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKV  154 (809)
Q Consensus        77 i~vw~~-~~~~~~~~~h~~~V~~l~~~-g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l  154 (809)
                      |+||+. |..+.++.-..+++..+.|+ ..-|+....+|+++|+++.........+. .+.....+..|.+.-+|    +
T Consensus        66 I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg-~e~~~~~I~ec~~f~~G----V  140 (829)
T KOG2280|consen   66 IRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVG-FESQMSDIVECRFFHNG----V  140 (829)
T ss_pred             EEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccc-cccccCceeEEEEecCc----e
Confidence            888876 44555544334478888884 67899999999999999876544211110 11122223445544455    6


Q ss_pred             EEEeCCCeEEEEeCCCCceEEEEcC---CCCCEEEEEEcCCCC---EE-EEEeCCCeEEEEEeeCC-eEEEEEeccCCCc
Q 003579          155 IVGSQEGSLQLWNISTKKKLYEFKG---WGSSISSCVSSPALD---VV-AVGCSDGKIHVHNVRYD-EELVTFTHSMRGA  226 (809)
Q Consensus       155 ~~~~~dg~i~lwd~~~~~~~~~~~~---~~~~I~~l~~sp~~~---~l-a~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~  226 (809)
                      ++-..+|.+.+-+-..-..+++++.   ...+-+|-..-+++.   .+ .+.-..| ..+.-...+ .....+... .+.
T Consensus       141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~-~~~  218 (829)
T KOG2280|consen  141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWP-NSS  218 (829)
T ss_pred             EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCC-Cce
Confidence            7666777777766433333444432   111212322222211   11 1111111 111222211 122223222 367


Q ss_pred             EEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC
Q 003579          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (809)
Q Consensus       227 V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~  279 (809)
                      +..++.||+.+ +|+--...|.|.+-+.+..+....+...-..+...++|..+
T Consensus       219 ~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  219 VVKISVSPNRR-FLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN  270 (829)
T ss_pred             EEEEEEcCCcc-eEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence            88999999988 88888889999999888777666655333333335666543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.83  E-value=0.7  Score=51.49  Aligned_cols=107  Identities=17%  Similarity=0.283  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec--CCCeEEEEEee--CCCEEEEEeCCCeEEEEEcC--------
Q 003579          478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHR--VNGLLATVADDLVIRLFDVV--------  545 (809)
Q Consensus       478 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s~--~~~~la~~~~d~~I~v~d~~--------  545 (809)
                      +-+.-+.-++..++-+....+.|||.+.+.+......  ...|..+.|..  +++.+.+.+-...|.+|--.        
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            3344444555555555556799999999887665554  68999998864  78877777788888887431        


Q ss_pred             -CCeEEEEE--ecCC-CCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579          546 -ALRMVRKF--EGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       546 -~~~~~~~~--~~h~-~~I~~l~fspdg~~l~s~s~D~~I~vwd~  586 (809)
                       +...++++  ..|+ .+|.+..|.+||.+++.++  +.+.|+|-
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence             22334443  3455 6899999999997666543  56888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.80  E-value=2.4  Score=47.88  Aligned_cols=222  Identities=13%  Similarity=0.121  Sum_probs=118.0

Q ss_pred             CeEEEEEEcC------CeEEEEEcCccEEEEec-CCCCCCcEEEEEeCCeEEEEECCe--------EEEEECCee----E
Q 003579           26 TENFVTVSVG------KAFHIYNCAKLNLVLVG-PQLPKKIRALASYRDYTFAAYGNH--------IAVVKRAHQ----V   86 (809)
Q Consensus        26 ~~~~i~~~~~------~~i~iwd~~~~~~~~~~-~~~~~~I~~la~~~~~~~~a~g~~--------i~vw~~~~~----~   86 (809)
                      +..+++++..      .++..||..+..-.... -..+..-.++++.++.+|++.|..        +..||..+.    +
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            3445555554      56889999997544444 234566678888888899887643        666665332    1


Q ss_pred             EEEccccccEEEEEEeCCEEEEEeCCCc-----EEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC-
Q 003579           87 ATWSRHSAKVNLLLLFGEHILSIDIDGN-----MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-  160 (809)
Q Consensus        87 ~~~~~h~~~V~~l~~~g~~l~s~~~dg~-----i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-  160 (809)
                      ..+.............|...|.|+.||.     +-.||..+.+-..  +....  .......+..-.+  ...++|+.+ 
T Consensus       365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~--~~r~~~gv~~~~g--~iYi~GG~~~  438 (571)
T KOG4441|consen  365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPML--TRRSGHGVAVLGG--KLYIIGGGDG  438 (571)
T ss_pred             CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc--cCCCC--cceeeeEEEEECC--EEEEEcCcCC
Confidence            2233333333344456777788888864     6777776654311  11111  1111122233344  345555544 


Q ss_pred             -----CeEEEEeCCCCceE--EEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEEeeCCeEEEEEeccCCCcEE
Q 003579          161 -----GSLQLWNISTKKKL--YEFKGWGSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTFTHSMRGAVT  228 (809)
Q Consensus       161 -----g~i~lwd~~~~~~~--~~~~~~~~~I~~l~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~V~  228 (809)
                           .++..||..+++=.  ..+..-.....  .-.-++.+.++|+.|+     +|..||..+.+-...-...  .+..
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~--~~rs  514 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT--SPRS  514 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc--cccc
Confidence                 35677887665422  22221111122  2223466778888776     3777888777654442211  1122


Q ss_pred             EEEEec-CCCCEEEEEcCCC-----cEEEEECCCce
Q 003579          229 ALAFSS-DGQPLLASGASSG-----VISIWNLEKRR  258 (809)
Q Consensus       229 ~l~fs~-dg~~~lasg~~dg-----~I~iwdl~~~~  258 (809)
                      ...... ++. +.++|+.||     +|..||..+.+
T Consensus       515 ~~g~~~~~~~-ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  515 AVGVVVLGGK-LYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccEEEECCE-EEEEecccCccccceeEEcCCCCCc
Confidence            222222 344 778888665     56677766553

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.80  E-value=3.5  Score=41.94  Aligned_cols=160  Identities=17%  Similarity=0.269  Sum_probs=96.5

Q ss_pred             cEEEEEEcCCCCEEEEE-eC-----------cCeEEEEECCCCceeeeeecC-------CCeEEEEEeeCC-----CEEE
Q 003579          476 EVVGVACDSTNTLMISA-GY-----------HGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVN-----GLLA  531 (809)
Q Consensus       476 ~v~~l~~~~~~~~l~s~-~~-----------dg~i~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~-----~~la  531 (809)
                      .|.++.+++++++-+.= |.           .-+|.+||++++++++++...       +.+..+++....     .++.
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            36677777777655531 11           126889999999999888654       456677777632     2333


Q ss_pred             EEe-CCCeEEEEEcCCCeEEEEEecCC-------------------CCeeeEEECC---CCCEEEEEeCCCeEEEEEcCC
Q 003579          532 TVA-DDLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSE---DGKWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       532 ~~~-~d~~I~v~d~~~~~~~~~~~~h~-------------------~~I~~l~fsp---dg~~l~s~s~D~~I~vwd~~~  588 (809)
                      .+. ..+.|.|+|+.+++..+.+..+.                   +.+..++.+|   ||++|.-....+ -++|.+++
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Confidence            332 34689999999998777655322                   2256667765   777888776554 35565543


Q ss_pred             cc--------------EEEEeee-CcceEEEEEcCCCCeEEEEEeCCCeEEEeecCcccCCCCC
Q 003579          589 AR--------------QIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN  637 (809)
Q Consensus       589 ~~--------------~i~~~~~-~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~  637 (809)
                      .-              .+..+.. ......++++++|....+--... +|..|+.+..|.+...
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~-aI~~w~~~~~~~~~~~  223 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQN-AIGCWDPDGPYTPENF  223 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCT-EEEEEETTTSB-GCCE
T ss_pred             HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCC-eEEEEeCCCCcCccch
Confidence            21              1122211 13467889999887666665555 7999999987776543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.62  E-value=9.6  Score=42.68  Aligned_cols=393  Identities=10%  Similarity=0.099  Sum_probs=171.0

Q ss_pred             ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCC--------CceEEEEcCCCCCEEEEEEcC-----CCCEEEEEe--CCC-
Q 003579          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNIST--------KKKLYEFKGWGSSISSCVSSP-----ALDVVAVGC--SDG-  203 (809)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~--------~~~~~~~~~~~~~I~~l~~sp-----~~~~la~g~--~dg-  203 (809)
                      ...++.+|.+  +.++++..+|.+.++.++.        ...+...-.....|..++|-.     +...+|+-.  ..+ 
T Consensus        46 G~~l~vDP~~--R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~  123 (504)
T PF10433_consen   46 GQYLAVDPSG--RCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR  123 (504)
T ss_dssp             --EEEE-TTS--SEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred             CcEEEECCcC--CEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence            3467899999  8899999999999998876        011111111256788888875     233444432  222 


Q ss_pred             -eEEEEEeeCCeEEEE----------EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE-CCCc---eeeeeeec---
Q 003579          204 -KIHVHNVRYDEELVT----------FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKR---RLQSVIRE---  265 (809)
Q Consensus       204 -~i~iwd~~~~~~~~~----------~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd-l~~~---~~~~~~~~---  265 (809)
                       .+..++......+..          +......+..-+....... .+++++. + +.+|. ....   .....+..   
T Consensus       124 ~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g-gllV~~~-~-~i~y~~~~~~~~~~~~~~~~~~~~  200 (504)
T PF10433_consen  124 THLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG-GLLVGGE-N-IIIYKNHLIGSGDYSFLSIPSPPS  200 (504)
T ss_dssp             EEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT--SEEEEES-S-EEEEEE------TTEEEEE--H-H
T ss_pred             ceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc-EEEEECC-E-EEEEecccccccccccccccCCcc
Confidence             244444222221111          1111112222222222122 3344432 2 33443 2111   11111110   


Q ss_pred             ccccceEEEE-------EecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCC-CCCCeeEEEecCC-CEEEEEECCC
Q 003579          266 AHDNAIISLH-------FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANG-RHILSAGQDR  336 (809)
Q Consensus       266 ~h~~~V~~l~-------~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~s~~~dg  336 (809)
                      ....-+.+..       ...++..++.+..+|.+....++....  .+....-+. .....++.+..+| .+++.|+.-|
T Consensus       201 ~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~g  278 (504)
T PF10433_consen  201 SSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFG  278 (504)
T ss_dssp             HHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS
T ss_pred             CCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecC
Confidence            1122233332       234566888888999998887766532  212222233 4556677777655 4677777655


Q ss_pred             CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc------eeEEeec--CCceEEEEEee
Q 003579          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC------NVVTCHM--DTAQAYVWRLQ  408 (809)
Q Consensus       337 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~w~~~  408 (809)
                      .=.++.+....                +.....-....|+..+.........-.      .+++|..  .++.+++....
T Consensus       279 ds~l~~~~~~~----------------l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G  342 (504)
T PF10433_consen  279 DSQLLQISLSN----------------LEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG  342 (504)
T ss_dssp             -EEEEEEESES----------------EEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES
T ss_pred             CcEEEEEeCCC----------------cEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc
Confidence            44444433111                111112224568888877654433333      6666654  45566655432


Q ss_pred             eeeecceeeecCCCCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEECC---CCceeeeeeCcccccccCccccEEEEE
Q 003579          409 NFVLGEHILRPCPENPTAVKACTISA----CGNFAVLGTAGGWIERFNLQ---SGISRGSYLDMSERSNYAHNGEVVGVA  481 (809)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~v~~s~----~g~~l~~g~~~g~i~i~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~  481 (809)
                      -...+.......  . ..++.+-.-+    ++.+++++..+. -.++.+.   .......... .  ........+.+-.
T Consensus       343 i~~~~~~~~~~~--l-~~v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~-~--~f~~~~~Tl~~~~  415 (504)
T PF10433_consen  343 IGIEGLELASSE--L-PGVTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEE-D--GFDTDEPTLAAGN  415 (504)
T ss_dssp             BEEE--EEEEEE--E-STEEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE------TS-SSS-EEEEEE
T ss_pred             CCceeeeeeccC--C-CCceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhh-c--cCCCCCCCeEEEE
Confidence            211100110000  0 1133332222    246777776654 3444443   2222211110 0  0011112222222


Q ss_pred             EcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-c---
Q 003579          482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G---  555 (809)
Q Consensus       482 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-~---  555 (809)
                      +.  +..++=... ..|++.+...++....+...  ..|.+.+.  ++.+++++..++.+..+.+.......... .   
T Consensus       416 ~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (504)
T PF10433_consen  416 VG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETIL  490 (504)
T ss_dssp             ET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----E
T ss_pred             cC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccc
Confidence            22  444554444 34888888888777776554  44444444  46788888889999999988776643332 1   


Q ss_pred             -CCCCeeeEEECC
Q 003579          556 -HTDRITDFCFSE  567 (809)
Q Consensus       556 -h~~~I~~l~fsp  567 (809)
                       ....|.++..+|
T Consensus       491 ~~~~eis~l~i~p  503 (504)
T PF10433_consen  491 ELDNEISCLSIEP  503 (504)
T ss_dssp             E-SS-EEEEE---
T ss_pred             cCCCceEEEEeCC
Confidence             457788887766

...

>PHA03098 kelch-like protein; Provisional

Probab=94.53  E-value=1.8  Score=48.94  Aligned_cols=133  Identities=10%  Similarity=0.073  Sum_probs=61.2

Q ss_pred             CEEEEEeCC-----CeEEEEeCCCCceEE--EEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEEeeCCeEEEE
Q 003579          152 NKVIVGSQE-----GSLQLWNISTKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVT  218 (809)
Q Consensus       152 ~~l~~~~~d-----g~i~lwd~~~~~~~~--~~~~~~~~I~~l~~sp~~~~la~g~~d------g~i~iwd~~~~~~~~~  218 (809)
                      ...+.|+.+     ..+..||..+.+=..  .+....... +++ .-++.+.+.|+.+      ..+..||..+++-...
T Consensus       344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            445566654     347778876653221  111111111 111 2355666676632      4588899877653322


Q ss_pred             EeccCCCcEEEEEEecCCCCEEEEEcCC--------CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC
Q 003579          219 FTHSMRGAVTALAFSSDGQPLLASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (809)
Q Consensus       219 ~~~~~~~~V~~l~fs~dg~~~lasg~~d--------g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d  289 (809)
                      -.......-.++ ...++. +.+.|+.+        ..+.+||..+++-...-.......-.+++. -++.+++.||.+
T Consensus       422 ~~~p~~r~~~~~-~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~  497 (534)
T PHA03098        422 SPLPISHYGGCA-IYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDK  497 (534)
T ss_pred             CCCCccccCceE-EEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCc
Confidence            111101111122 223555 67777643        238889988774332211011111112222 266677777654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.41  E-value=0.39  Score=55.34  Aligned_cols=188  Identities=14%  Similarity=0.083  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccc--------ccc-cCccccEEEEEEcCCCCEEEE--EeCcC
Q 003579          428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE--------RSN-YAHNGEVVGVACDSTNTLMIS--AGYHG  496 (809)
Q Consensus       428 ~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~--------~~~-~~h~~~v~~l~~~~~~~~l~s--~~~dg  496 (809)
                      ..++.++.-..++++...+.+.++-..+-.....-.+...        ... ....-.+..+.+.+|+...++  .+.+-
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            3455666555666666666666654433211111100000        001 122345666777777654443  33445


Q ss_pred             eEEEEECCCCceee--------ee----ecCCCeEEEEEeeCC-CEEEEEeCCCeEEEEEcCCCeE-EEEEecCCCCeee
Q 003579          497 DIKVWDFKGRDLKS--------RW----EVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITD  562 (809)
Q Consensus       497 ~i~iwd~~~~~~~~--------~~----~~~~~i~~~~~s~~~-~~la~~~~d~~I~v~d~~~~~~-~~~~~~h~~~I~~  562 (809)
                      .|..||+++-..-.        ..    ....-..++.|.|.- ...|+...|+.|+|..+..... +..+. -....++
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Ta  203 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTA  203 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceee
Confidence            78999987542221        11    111344566777743 3456677899999887654332 22222 4567899


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeee-----CcceEEEEEcCCCCeEEEEE
Q 003579          563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVLATAH  617 (809)
Q Consensus       563 l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~-----~~~v~~l~~spdg~~lat~~  617 (809)
                      ++|+|.|+.++.|-..|++.-|. ++++....+..     ...|.+|+|-....||+.=+
T Consensus       204 v~WSprGKQl~iG~nnGt~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  204 VLWSPRGKQLFIGRNNGTEVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             EEeccccceeeEecCCCeEEEee-cccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            99999999999999999998887 44554444432     23499999998888887654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.38  E-value=6.1  Score=39.40  Aligned_cols=236  Identities=12%  Similarity=0.130  Sum_probs=127.4

Q ss_pred             ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC--CCc-eeEEeccC-----CCCCCeeEEEecCCC------------EE
Q 003579          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDP-RLLRFRSG-----HSAPPLCIRFYANGR------------HI  329 (809)
Q Consensus       270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~--~~~-~~~~~~~~-----h~~~v~~i~~~~~~~------------~l  329 (809)
                      .-+.|+++|.+.+-++....+...+|+.+...  +.+ .+......     ....++.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35789999999988888888999999876221  111 22333221     234678888875332            35


Q ss_pred             EEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeee
Q 003579          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (809)
Q Consensus       330 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (809)
                      +.+++||+|.-|...-+.....                      ..+                          .+.|-. 
T Consensus       104 if~tEdGTisaW~p~v~~t~~~----------------------~~~--------------------------~~~d~s-  134 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMT----------------------RAE--------------------------IVVDAS-  134 (336)
T ss_pred             EEEeCCceEEeecCcCCccccc----------------------ccE--------------------------EEEccC-
Confidence            6778888888887422211000                      000                          000000 


Q ss_pred             eeecceeeecCCCCCCCeEEEEEc--CCCCEEEEE-eCCCcEEEEECCCCcee--eeeeCccccc--------ccCcccc
Q 003579          410 FVLGEHILRPCPENPTAVKACTIS--ACGNFAVLG-TAGGWIERFNLQSGISR--GSYLDMSERS--------NYAHNGE  476 (809)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~v~~s--~~g~~l~~g-~~~g~i~i~~~~~~~~~--~~~~~~~~~~--------~~~h~~~  476 (809)
                                  .....-+.+++.  ..+++|..+ -.+|+|.+||-.-....  ..+.+.....        ..+..--
T Consensus       135 ------------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~ly  202 (336)
T TIGR03118       135 ------------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLY  202 (336)
T ss_pred             ------------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEE
Confidence                        000222334443  335555544 45688988875443221  1111110000        0000111


Q ss_pred             EEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEee------CCCEEEEEeCCCeEEEEEcCCC
Q 003579          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVAL  547 (809)
Q Consensus       477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~------~~~~la~~~~d~~I~v~d~~~~  547 (809)
                      |+-..-+++...=+.+..-|.|-+||.. +.+++++...   ...+.|+..|      .+.+|+--..||+|..||..++
T Consensus       203 VtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       203 VTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             EEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence            2222223333222333444789999965 6677777554   4566777765      3667777778999999999999


Q ss_pred             eEEEEEecCCC------CeeeEEECC
Q 003579          548 RMVRKFEGHTD------RITDFCFSE  567 (809)
Q Consensus       548 ~~~~~~~~h~~------~I~~l~fsp  567 (809)
                      +.+..+....+      .+..|+|-.
T Consensus       282 ~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       282 AQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             ceeeeecCCCCCeEEecCeEEeeeCC
Confidence            98888775433      245566644

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.35  E-value=12  Score=44.90  Aligned_cols=179  Identities=15%  Similarity=0.206  Sum_probs=102.8

Q ss_pred             EEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEE--------ecC
Q 003579          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF--------SSD  235 (809)
Q Consensus       164 ~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~f--------s~d  235 (809)
                      .+|++. .+.+..+. |...-+.+-+-|.-.+.-. +-|..+.+|+..++.....+..- ...|..+..        .|.
T Consensus        63 ~v~~IP-~el~eq~~-~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~-shtIl~V~LvkPkpgvFv~~  138 (1311)
T KOG1900|consen   63 QVVNIP-DELLEQFS-NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGL-SHTILKVGLVKPKPGVFVPE  138 (1311)
T ss_pred             ccccCC-HHHHHHhc-CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccch-hhhheeeeeecCCCCcchhh
Confidence            345552 23333333 3344445555555443332 45789999999998777776654 444555543        333


Q ss_pred             CCCEEEEEcCCCcEEEEECCCc----ee---eeeeec-ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCC-----
Q 003579          236 GQPLLASGASSGVISIWNLEKR----RL---QSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG-----  302 (809)
Q Consensus       236 g~~~lasg~~dg~I~iwdl~~~----~~---~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~-----  302 (809)
                      =+++|+.++ --.|.++-+.-.    ..   ...+.. .....|.++....+|+.+++| .||.|.-.-+...++     
T Consensus       139 IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~r  216 (1311)
T KOG1900|consen  139 IQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSR  216 (1311)
T ss_pred             hheeEEecc-cceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcc
Confidence            345666655 345666543221    11   111111 224568899988888766665 556443333332211     


Q ss_pred             --------------CceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccc
Q 003579          303 --------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (809)
Q Consensus       303 --------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~  348 (809)
                                    .+.++.....+..+|..+.....-..+.+-+..+++..|++.....
T Consensus       217 c~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~  276 (1311)
T KOG1900|consen  217 CRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGL  276 (1311)
T ss_pred             cccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence                          0122222236778999999998888899999999999999987543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.12  E-value=8.8  Score=40.23  Aligned_cols=199  Identities=14%  Similarity=0.169  Sum_probs=110.3

Q ss_pred             EEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEc----CCCCE--EEEEeC-C---CeEEEEEe
Q 003579          142 TCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS----PALDV--VAVGCS-D---GKIHVHNV  210 (809)
Q Consensus       142 ~~~~~p~~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~s----p~~~~--la~g~~-d---g~i~iwd~  210 (809)
                      .+..+|...- ..|+....++-+.+||+ .|+.++.+..  +....+..-    -.++.  ||+++. +   .+|++|.+
T Consensus        58 AIWvnp~dp~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i  134 (381)
T PF02333_consen   58 AIWVNPADPAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI  134 (381)
T ss_dssp             EEE--SS-GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred             cEecCCCCcccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence            4445543321 46777778888999998 6777777752  344444322    13332  444443 2   47999988


Q ss_pred             eCC-eEEEEEecc------CCCcEEEEEEe--c-CCCCEEEEEcCCCcEEEEECC---Cc----eeeeeeecccccceEE
Q 003579          211 RYD-EELVTFTHS------MRGAVTALAFS--S-DGQPLLASGASSGVISIWNLE---KR----RLQSVIREAHDNAIIS  273 (809)
Q Consensus       211 ~~~-~~~~~~~~~------~~~~V~~l~fs--~-dg~~~lasg~~dg~I~iwdl~---~~----~~~~~~~~~h~~~V~~  273 (809)
                      ... ..+..+...      ....++.+|+-  + +|..++++...+|.+.-|-+.   .+    ++++.+.  -.+.+..
T Consensus       135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EG  212 (381)
T PF02333_consen  135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEG  212 (381)
T ss_dssp             ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEE
T ss_pred             cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceE
Confidence            742 234333221      12346677763  3 466567777888988888764   23    3455554  3457888


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEeeCCCCC-ceeEEecc--CCCCCCeeEEEec--CC-CEEEEEE-CCCCEEEEEeee
Q 003579          274 LHFFANEPVLMSASADNSIKMWIFDTTDGD-PRLLRFRS--GHSAPPLCIRFYA--NG-RHILSAG-QDRAFRLFSVIQ  345 (809)
Q Consensus       274 l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~--~h~~~v~~i~~~~--~~-~~l~s~~-~dg~i~~wd~~~  345 (809)
                      |........|+.+-.+.-|.-|+.+...+. .+++....  +....|-.++...  ++ .+|+.++ .+++..+|+...
T Consensus       213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            888888889999888765555554443332 33443332  2456788888764  33 3555444 577899998653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK10115 protease 2; Provisional

Probab=93.99  E-value=15  Score=42.62  Aligned_cols=114  Identities=10%  Similarity=0.075  Sum_probs=67.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC-----CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC-----CcEEE
Q 003579          182 SSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISI  251 (809)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d-----g~I~i  251 (809)
                      -.+..+.+||++++||.+...     ..|++.|+.+++.+......  .. ..++|.+|++.++.+...+     ..|..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            346678899999999876432     45888999888644332221  12 5699999998555554422     46888


Q ss_pred             EECCCc--eeeeeeecccccceE-EEEEecCCCEEEEEcC---CCcEEEEEeeC
Q 003579          252 WNLEKR--RLQSVIREAHDNAII-SLHFFANEPVLMSASA---DNSIKMWIFDT  299 (809)
Q Consensus       252 wdl~~~--~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~---d~~i~vw~~~~  299 (809)
                      +++.++  +....+. ....... ....+.++.+++..+.   ++.+.+++.+.
T Consensus       204 h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~  256 (686)
T PRK10115        204 HTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL  256 (686)
T ss_pred             EECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence            888887  3333333 2222222 3333447765554332   34566665433

>PHA03098 kelch-like protein; Provisional

Probab=93.94  E-value=3.2  Score=46.93  Aligned_cols=187  Identities=11%  Similarity=0.071  Sum_probs=89.0

Q ss_pred             EEEEcCCeEEEEEEcC------CeEEEEEcCccEEEEecCCC-CCCcEEEEEeCCeEEEEECCe-------EEEEECCee
Q 003579           20 SVQRLGTENFVTVSVG------KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGNH-------IAVVKRAHQ   85 (809)
Q Consensus        20 ~~~~~~~~~~i~~~~~------~~i~iwd~~~~~~~~~~~~~-~~~I~~la~~~~~~~~a~g~~-------i~vw~~~~~   85 (809)
                      +....++..++.++.+      +.+..||..+.+-....+.. +..-.+++...+..|+..|..       +..||....
T Consensus       289 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             eEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence            4444567777777653      25788999887765443211 222234455566777766632       677775432


Q ss_pred             EEE----EccccccEEEEEEeCCEEEEEeCC------CcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEE
Q 003579           86 VAT----WSRHSAKVNLLLLFGEHILSIDID------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVI  155 (809)
Q Consensus        86 ~~~----~~~h~~~V~~l~~~g~~l~s~~~d------g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~  155 (809)
                      .-.    +............++...+.|+.+      +.+.+||..+.+-..  .......  ....++...++  ...+
T Consensus       369 ~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~--~~~~p~~--r~~~~~~~~~~--~iyv  442 (534)
T PHA03098        369 KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK--GSPLPIS--HYGGCAIYHDG--KIYV  442 (534)
T ss_pred             ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee--cCCCCcc--ccCceEEEECC--EEEE
Confidence            211    111111111222355555555532      357888887654211  1111111  11122233334  3344


Q ss_pred             EEeCC--------CeEEEEeCCCCceEE--EEcCCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEeeCCe
Q 003579          156 VGSQE--------GSLQLWNISTKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDE  214 (809)
Q Consensus       156 ~~~~d--------g~i~lwd~~~~~~~~--~~~~~~~~I~~l~~sp~~~~la~g~~d-----g~i~iwd~~~~~  214 (809)
                      +|+.+        ..+.+||..+++=..  .+.........+.+  ++.+++.|+.+     ..+.+||..+++
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            55432        237888887654221  11111111122222  56666666654     457777776554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.77  E-value=8  Score=38.58  Aligned_cols=85  Identities=16%  Similarity=0.153  Sum_probs=57.8

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC------CCCEEEEEeCcCeEEEEECCCCc
Q 003579          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS------TNTLMISAGYHGDIKVWDFKGRD  507 (809)
Q Consensus       434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~~~l~s~~~dg~i~iwd~~~~~  507 (809)
                      ++++.=+.|...|.|.+||+... .++.+..      .+.-..-++|+..|      .+.+|+---.||+|..+|..+++
T Consensus       210 ~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       210 ADRNDEVAGAGLGYVNVFTLNGQ-LLRRVAS------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CcccccccCCCcceEEEEcCCCc-EEEEecc------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence            33444455566688889987644 3343321      24556678888866      46778777789999999999998


Q ss_pred             eeeeeecC-------CCeEEEEEee
Q 003579          508 LKSRWEVG-------CSLVKIVYHR  525 (809)
Q Consensus       508 ~~~~~~~~-------~~i~~~~~s~  525 (809)
                      .+..+...       ..++.+.|..
T Consensus       283 ~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       283 QLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eeeeecCCCCCeEEecCeEEeeeCC
Confidence            88777543       4566777765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.76  E-value=2.3  Score=48.05  Aligned_cols=74  Identities=15%  Similarity=0.189  Sum_probs=53.1

Q ss_pred             CCCEEEEEEc--CCCCEEEEEeCCCeEEEEEeeCCeE--EEEEeccCCCcEEEEEEecCC--C---CEEEEEcCCCcEEE
Q 003579          181 GSSISSCVSS--PALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSDG--Q---PLLASGASSGVISI  251 (809)
Q Consensus       181 ~~~I~~l~~s--p~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~V~~l~fs~dg--~---~~lasg~~dg~I~i  251 (809)
                      ....+.++++  ...++||+++....|.||-......  ...-...+...|-+++|.++.  .   -.|++++-.|.+.+
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~  242 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT  242 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence            4578899998  7888999999888898887765311  111112235679999998764  1   26777888999999


Q ss_pred             EEC
Q 003579          252 WNL  254 (809)
Q Consensus       252 wdl  254 (809)
                      |++
T Consensus       243 ~~I  245 (717)
T PF08728_consen  243 FKI  245 (717)
T ss_pred             EEE
Confidence            887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.72  E-value=11  Score=43.67  Aligned_cols=76  Identities=9%  Similarity=0.108  Sum_probs=52.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC----------CeE--E-EEE-------eccCCCcEEEEEEecCC--CC
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRY----------DEE--L-VTF-------THSMRGAVTALAFSSDG--QP  238 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~----------~~~--~-~~~-------~~~~~~~V~~l~fs~dg--~~  238 (809)
                      ...|..+.++|+|++||..+..|...+ .+..          |+.  . +++       .......|..+.|+|.+  ..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            346888999999999999988665443 3321          111  1 111       12224589999999974  23


Q ss_pred             EEEEEcCCCcEEEEECCCc
Q 003579          239 LLASGASSGVISIWNLEKR  257 (809)
Q Consensus       239 ~lasg~~dg~I~iwdl~~~  257 (809)
                      .|++-..|+.+++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            7777888999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.69  E-value=0.018  Score=63.87  Aligned_cols=199  Identities=15%  Similarity=0.154  Sum_probs=109.9

Q ss_pred             EccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCC--CccccceeeeEE----cCCccccEEEEeCCCCCCEEEEEeC
Q 003579           89 WSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKG--IEENLAPVGHVK----LDDKFTPTCIMHPDTYLNKVIVGSQ  159 (809)
Q Consensus        89 ~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~--~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~l~~~~~  159 (809)
                      ++|..+.|-.+.|   +-..+.  ..-|.+.|||++-  ++......-+..    .....+..|-+.++.  -++..+-.
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~--~~ic~~~~  203 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK--VYICYGLK  203 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc--ceeeeccC
Confidence            5666777777776   112222  3357799999875  332211111111    112333344455555  56777778


Q ss_pred             CCeEEEEeCCCCceEEEEcCCCCCEEEEE-----------EcCCCCEEEEEeCCCeEEEEEee-CCe----EEEEEeccC
Q 003579          160 EGSLQLWNISTKKKLYEFKGWGSSISSCV-----------SSPALDVVAVGCSDGKIHVHNVR-YDE----ELVTFTHSM  223 (809)
Q Consensus       160 dg~i~lwd~~~~~~~~~~~~~~~~I~~l~-----------~sp~~~~la~g~~dg~i~iwd~~-~~~----~~~~~~~~~  223 (809)
                      ++++++.++++... ..+.+|...++.++           .||||..+|.++.||.++.|.+- +|+    ++...+.|.
T Consensus       204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            88999888765433 33455766655543           68999999999999999888764 333    344444443


Q ss_pred             CCcEEEEEEecCC-------C-CEEEEEc-CCCcEEEEECCCceeeeeeecccccceEEEEEecCCC------------E
Q 003579          224 RGAVTALAFSSDG-------Q-PLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP------------V  282 (809)
Q Consensus       224 ~~~V~~l~fs~dg-------~-~~lasg~-~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~------------~  282 (809)
                      +.+-.|.-|..+.       . .++++++ .+..+++|....-+++  +. ..-..|..+. -+++.            .
T Consensus       283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~-~~~d~v~iV~-p~~~~v~~~~~~~~~~~~  358 (1283)
T KOG1916|consen  283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LD-KLIDGVQIVG-PHDGEVTDLSMCQWMTTR  358 (1283)
T ss_pred             CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hh-hcccceEeec-CCCccccchhhhHHHHHH
Confidence            3433333344321       1 1344444 4567899987665554  11 1122233333 22221            2


Q ss_pred             EEEEcCCCcEEEEE
Q 003579          283 LMSASADNSIKMWI  296 (809)
Q Consensus       283 l~s~s~d~~i~vw~  296 (809)
                      +++-+.++.|++|.
T Consensus       359 ~v~r~v~~~i~~~q  372 (1283)
T KOG1916|consen  359 LVSRSVDGTIKIWQ  372 (1283)
T ss_pred             HHHhhhHHHHHHhh
Confidence            34456688888883

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.39  E-value=13  Score=39.76  Aligned_cols=149  Identities=11%  Similarity=0.089  Sum_probs=83.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEE-EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce----
Q 003579          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR----  258 (809)
Q Consensus       184 I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~----  258 (809)
                      ...+..++++.+++++..-..++-||  .++.. ..........++++.|.+++. +++++ ..|.+. +....++    
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~-~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLY-VSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEE-EecCCCCcccc
Confidence            45566788888888776533333343  23322 223333356799999999998 55544 556654 4444443    


Q ss_pred             -eeeeeecc-cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC
Q 003579          259 -LQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (809)
Q Consensus       259 -~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg  336 (809)
                       ........ -...+.++.|.+++..+++ +..|.+...  ......+........-....+.+.|.++++-+ ..+.+|
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~-~~G~~G  391 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKKGF-VLGNDG  391 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCceE-EEeCCc
Confidence             12222211 1235889999988765554 556766654  22222223332223445677889887766544 455677


Q ss_pred             CEEEE
Q 003579          337 AFRLF  341 (809)
Q Consensus       337 ~i~~w  341 (809)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            66544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.36  E-value=6.1  Score=36.88  Aligned_cols=173  Identities=14%  Similarity=0.108  Sum_probs=99.3

Q ss_pred             eCCEEEEEeCC--CcEEEEEcCCCccccceeeeEEcCC--ccccEEEEeCCCCCCEE-EEEeCCCeEEEEeCCCCceEEE
Q 003579          102 FGEHILSIDID--GNMFIWAFKGIEENLAPVGHVKLDD--KFTPTCIMHPDTYLNKV-IVGSQEGSLQLWNISTKKKLYE  176 (809)
Q Consensus       102 ~g~~l~s~~~d--g~i~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~l-~~~~~dg~i~lwd~~~~~~~~~  176 (809)
                      +|..+.+.+.-  ..|++||+.+++.    +...+...  -+.-.  +..-+  +.+ ...-.+|.-..+|..+.+.+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~----~~s~~l~~~~~FgEG--it~~g--d~~y~LTw~egvaf~~d~~t~~~lg~  126 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQE----IFSEKLAPDTVFGEG--ITKLG--DYFYQLTWKEGVAFKYDADTLEELGR  126 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceE----EEEeecCCccccccc--eeecc--ceEEEEEeccceeEEEChHHhhhhcc
Confidence            45555665553  3499999998877    33333321  11111  11111  222 2334678888999999888877


Q ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe----ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579          177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT----HSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (809)
Q Consensus       177 ~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~----~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw  252 (809)
                      +.-.. .=..+  ..|++.|..+....+++.-|.++-....++.    +..-..++-+.|- ||. +.|---.+..|...
T Consensus       127 ~~y~G-eGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI  201 (262)
T COG3823         127 FSYEG-EGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARI  201 (262)
T ss_pred             cccCC-cceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEE
Confidence            65422 22233  3456667877777778887877554443333    2212334455554 455 55544455567777


Q ss_pred             ECCCceeeeeee-----------cccccceEEEEEecCCCEEEEEc
Q 003579          253 NLEKRRLQSVIR-----------EAHDNAIISLHFFANEPVLMSAS  287 (809)
Q Consensus       253 dl~~~~~~~~~~-----------~~h~~~V~~l~~~~~~~~l~s~s  287 (809)
                      |.++|+.+..+.           ..|..-.+.+++.|++..++..+
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            777777666554           23556778899999885444443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.30  E-value=20  Score=41.83  Aligned_cols=107  Identities=9%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe---cCCCCeeeEEECCCC------CEEEEEeCCCeEEEE
Q 003579          514 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDG------KWLLSSGMDGSLRIW  584 (809)
Q Consensus       514 ~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg------~~l~s~s~D~~I~vw  584 (809)
                      .+..+.-+.-.-+...++++..++.+.-+.......+..+.   .-...|.++++.++.      ++++.++.|+++++.
T Consensus       536 ~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vrii  615 (1205)
T KOG1898|consen  536 TPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRII  615 (1205)
T ss_pred             CCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEE
Confidence            33444433333345677777778877777664333333442   234668899998875      689999999999999


Q ss_pred             EcCCccEEEEeee---CcceEEEEEc---CCCC------eEEEEEeCC
Q 003579          585 DVILARQIDAIHV---DVSITALSLS---PNMD------VLATAHVDQ  620 (809)
Q Consensus       585 d~~~~~~i~~~~~---~~~v~~l~~s---pdg~------~lat~~~d~  620 (809)
                      .+.-..++..+..   ..++.++.+-   .++.      +|-+|-.+|
T Consensus       616 sL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NG  663 (1205)
T KOG1898|consen  616 SLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNG  663 (1205)
T ss_pred             EecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccccc
Confidence            9987777766653   2334444443   3332      455555555

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.91  E-value=4.1  Score=45.03  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      ..|.+.|.-+.....+..|..-...-.+.++|+.+.+..-.+   +-++-+.|-|-.+.++.-..|.  +.+|-|-
T Consensus       334 inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil---nfcsymqwvp~sdvivaqn~dn--l~iwyn~  404 (1636)
T KOG3616|consen  334 INHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL---NFCSYMQWVPGSDVIVAQNGDN--LCIWYNI  404 (1636)
T ss_pred             ccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH---HHhhhheeccCcceEEecCCCc--eEEEecC
Confidence            348888888888887777776666667888888764321111   1266789999999888877664  9999763

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.81  E-value=13  Score=38.03  Aligned_cols=145  Identities=10%  Similarity=0.043  Sum_probs=77.5

Q ss_pred             CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-ceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEE-cCCCeE
Q 003579          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRM  549 (809)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d-~~~~~~  549 (809)
                      .-.+.+..+..+++|++++++.....+.-||--.. =..+.......|..|.|.|++.+.+++ ..|.|+.=+ ....+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            44577888999999998888877666667774432 222333345899999999998877755 888888877 222222


Q ss_pred             EEE-Ee---cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeee----CcceEEEEEcCCCCeEEEEEeCC
Q 003579          550 VRK-FE---GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQ  620 (809)
Q Consensus       550 ~~~-~~---~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~----~~~v~~l~~spdg~~lat~~~d~  620 (809)
                      ... +.   .-.-.+.+++|.+++...++|+ .|++ +.....|+-=...+.    +.....+.|.+..+-+|. +.+|
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G  296 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDG  296 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCc
Confidence            111 11   1223378999999988777666 4433 345555654443332    445888999766555544 4555

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.75  E-value=7.8  Score=40.56  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=70.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~  503 (809)
                      .++|.++.||+|.+.+++--.+..|.+++.+.......+...    -...+..|.+..|... .-++.....| +.+|..
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE----CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH----hccCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence            379999999999999999999999999998655444333210    0123445889999866 3444444333 555544


Q ss_pred             CCC--ceeeeeecCCCeEEEEEeeCCCEEEEEe--CCCeEEEEEcCCC
Q 003579          504 KGR--DLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVAL  547 (809)
Q Consensus       504 ~~~--~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~I~v~d~~~~  547 (809)
                      ...  .+...-.+...|.-..|.++.+.+..++  ..+++.=+-+.++
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            322  2211222335677778888777544433  3344433444433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.66  E-value=2.4  Score=44.79  Aligned_cols=137  Identities=15%  Similarity=0.187  Sum_probs=88.8

Q ss_pred             EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC-------EEEEEeCCCeEEEEEeeC-CeEEEEEec--c-CC
Q 003579          156 VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRY-DEELVTFTH--S-MR  224 (809)
Q Consensus       156 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-------~la~g~~dg~i~iwd~~~-~~~~~~~~~--~-~~  224 (809)
                      .|.....++-.|++.|+.+.....|...  -+.|.|+.+       .-++|-++..|.-.|.+- |..+.....  - .+
T Consensus       485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK  562 (776)
T COG5167         485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK  562 (776)
T ss_pred             cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence            4556677888899999999999887765  567777532       234566666666666553 222222111  0 01


Q ss_pred             CcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (809)
Q Consensus       225 ~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~  298 (809)
                      ....|..-...|  ++|+|+..|.|++||--..+....+. +....|..+..+.+|.++++.+. +.+.+-++.
T Consensus       563 n~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         563 NKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ccccccccccCc--eEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            223333333334  79999999999999965544444555 77889999999999997776664 455555543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.65  E-value=11  Score=42.33  Aligned_cols=62  Identities=19%  Similarity=0.301  Sum_probs=45.4

Q ss_pred             CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC-CCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579          515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       515 ~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~-~~I~~l~fspdg~~l~s~s~D~~I~vwd  585 (809)
                      .+.+..+..||+.++||.-...|.|.+.+++..+....+.... .+-..++|         ++.|..+..|+
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~W---------cgndaVvl~~e  278 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAW---------CGNDAVVLSWE  278 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhcee---------ecCCceEEEEe
Confidence            4788899999999999999999999999998888777776221 22234555         44455555565

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.42  E-value=18  Score=38.82  Aligned_cols=177  Identities=9%  Similarity=0.097  Sum_probs=95.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC----------
Q 003579          436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG----------  505 (809)
Q Consensus       436 g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~----------  505 (809)
                      -.++.+-+.||.+.+|+-..-.....++.      .-..   ..+++.+....+++++.+..+.-|.+..          
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~------~llP---gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~  215 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPD------FLLP---GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSR  215 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCC------CCCC---cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccc
Confidence            36889999999999999877665444431      1222   3466777888899999988998887521          


Q ss_pred             -----------C--ceeeeeecCCCeEEEEEeeC---CCEEEEEeCCCeEEEEEcCCCeEE--EEEecCCCCee--eE--
Q 003579          506 -----------R--DLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMV--RKFEGHTDRIT--DF--  563 (809)
Q Consensus       506 -----------~--~~~~~~~~~~~i~~~~~s~~---~~~la~~~~d~~I~v~d~~~~~~~--~~~~~h~~~I~--~l--  563 (809)
                                 .  ....++..+..+..+.....   ...+++-+ ..++.+.+-. |++.  +++........  .+  
T Consensus       216 ~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~  293 (418)
T PF14727_consen  216 QSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPW  293 (418)
T ss_pred             cccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEecCCceeeEEEEEeec
Confidence                       0  11223344455666555442   22233222 4455555543 4332  23322211111  11  


Q ss_pred             EECCCC-CEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEE---EcCCCCeEEEEEeCCCeEEEe
Q 003579          564 CFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALS---LSPNMDVLATAHVDQNGVYLW  626 (809)
Q Consensus       564 ~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~---~spdg~~lat~~~d~~~i~lW  626 (809)
                      ...|+. ..++.++.++++.||.=  .+++...+....+.++.   |..-...|++-+.+| .+.+-
T Consensus       294 ~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G-~L~v~  357 (418)
T PF14727_consen  294 YNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEG-QLSVS  357 (418)
T ss_pred             ccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceEEEEcCCC-cEEEE
Confidence            112221 24777888999999973  33443333333322333   333344677777777 36553

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.17  E-value=8.2  Score=40.26  Aligned_cols=155  Identities=17%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             ccccEEEEEEcCCCCEEEEEeCcCe------EEEEECCC--C-----ceeeeee---cC--------CCeEEEEEeeCCC
Q 003579          473 HNGEVVGVACDSTNTLMISAGYHGD------IKVWDFKG--R-----DLKSRWE---VG--------CSLVKIVYHRVNG  528 (809)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~------i~iwd~~~--~-----~~~~~~~---~~--------~~i~~~~~s~~~~  528 (809)
                      .-+.+.++.+.+++..+++.+.+|.      +..+++..  +     .......   ..        ...-++++.+++.
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            3466789999976666666777777      55555443  1     0111111   11        1344788877888


Q ss_pred             EEEEEeCC------CeEEEEEcCCCeEEEEEe---------------cCCCCeeeEEECCCCCEEEEEeC-----CC---
Q 003579          529 LLATVADD------LVIRLFDVVALRMVRKFE---------------GHTDRITDFCFSEDGKWLLSSGM-----DG---  579 (809)
Q Consensus       529 ~la~~~~d------~~I~v~d~~~~~~~~~~~---------------~h~~~I~~l~fspdg~~l~s~s~-----D~---  579 (809)
                      ++++.-.+      ..|+.++.. ++....+.               ......-+|+++|||+.|.++.+     |+   
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            77777667      788888877 66555441               12345789999999996665542     22   


Q ss_pred             ------eEEEE--EcCC-ccEEEEee--eC--------cceEEEEEcCCCCeEEEEEe----CCCeEEEeec
Q 003579          580 ------SLRIW--DVIL-ARQIDAIH--VD--------VSITALSLSPNMDVLATAHV----DQNGVYLWVN  628 (809)
Q Consensus       580 ------~I~vw--d~~~-~~~i~~~~--~~--------~~v~~l~~spdg~~lat~~~----d~~~i~lW~~  628 (809)
                            .+|++  |..+ +.....+.  ..        ..++.+.+-+++++|+.-=.    .+..++|+.+
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence                  14554  5544 33333332  22        34889999999997765433    2234555544

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=91.89  E-value=33  Score=40.85  Aligned_cols=147  Identities=17%  Similarity=0.139  Sum_probs=76.6

Q ss_pred             CEEEEEeC---------CCcEEEEECCC-----CceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579          437 NFAVLGTA---------GGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (809)
Q Consensus       437 ~~l~~g~~---------~g~i~i~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd  502 (809)
                      .++++|+.         .|.+++|++-.     |+........ ..-....+++|..++= -+|. |+++ ...+|.+|+
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlK-el~~eE~KGtVsavce-V~G~-l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLK-ELYIEEQKGTVSAVCE-VRGH-LLSS-QGQKIIVRK 1122 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceee-eeehhhcccceEEEEE-eccE-EEEc-cCcEEEEEE
Confidence            47777754         48999999733     2221111100 0001245667776653 2454 4433 336799999


Q ss_pred             C-CCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE-EEEEec--CCCCeeeEEECCCCC--EEEEEe
Q 003579          503 F-KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEG--HTDRITDFCFSEDGK--WLLSSG  576 (809)
Q Consensus       503 ~-~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~-~~~~~~--h~~~I~~l~fspdg~--~l~s~s  576 (809)
                      + +...++..--..-++.-.....-.+++..|.--..|.+.-.+..-. +.-+..  ..-.+.++.|--||.  +++++.
T Consensus      1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred             eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence            8 4444433222222222222222355666666556666554433211 111211  123477788877775  567788


Q ss_pred             CCCeEEEEEcC
Q 003579          577 MDGSLRIWDVI  587 (809)
Q Consensus       577 ~D~~I~vwd~~  587 (809)
                      .|+.|++|-..
T Consensus      1203 a~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1203 ADRNIHVYMYA 1213 (1366)
T ss_pred             CCCcEEEEEeC
Confidence            89999988653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.73  E-value=0.85  Score=44.20  Aligned_cols=63  Identities=21%  Similarity=0.302  Sum_probs=48.5

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCccEEEEe---------------eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579          565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       565 fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~---------------~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      +..++.||++.+.+|.+++||+.+++.+..-               .....|.++.++.+|.-|++-+. + ..|.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g-~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-G-DSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-C-CEEEeccc
Confidence            4457889999999999999999998765332               12234899999999988888765 4 38999864

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=91.64  E-value=12  Score=36.85  Aligned_cols=136  Identities=13%  Similarity=0.188  Sum_probs=87.8

Q ss_pred             CCeEEEEEEc-----CCeEEEEEcCccEEEEecCCCCCCcEEEEEeCC-----eEEEEECCeEEEEECCeeEEEEc----
Q 003579           25 GTENFVTVSV-----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD-----YTFAAYGNHIAVVKRAHQVATWS----   90 (809)
Q Consensus        25 ~~~~~i~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~-----~~~~a~g~~i~vw~~~~~~~~~~----   90 (809)
                      |...++++..     +..++||.-.++..-...+..|..|.++-....     .+-+|+|+.|++|+.-+....+.    
T Consensus        29 Gd~kLvvaD~g~~~~~~kLKVykGt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G~~vyiYkNlkP~yKftlP~~  108 (257)
T PF14779_consen   29 GDYKLVVADLGTGDQNMKLKVYKGTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAGPSVYIYKNLKPFYKFTLPPL  108 (257)
T ss_pred             CeEEEEEEecCCcCCCceEEEEcCCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeCCEEEEEecccceeeecCCCC
Confidence            4566777775     468999987776655555666666666655432     56778899999997332211100    


Q ss_pred             -----------------------------------------------------------------cccccEEEEEE----
Q 003579           91 -----------------------------------------------------------------RHSAKVNLLLL----  101 (809)
Q Consensus        91 -----------------------------------------------------------------~h~~~V~~l~~----  101 (809)
                                                                                       .+...|+||+-    
T Consensus       109 ~~~~~E~eiW~~~~~~~i~~~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ee~~~fi~~~k~~pl~~~t~ITcm~tikk~  188 (257)
T PF14779_consen  109 EINPLEQEIWQQLREGKIDPETLKEMLESLRDIAGVKLSPRSLRFLQLDPEEREAFIERYKDSPLKRQTVITCMATIKKS  188 (257)
T ss_pred             CCCHHHHHHHHhcccCCCCHHHHHHHHHHHhhccCCccCHHHHHHHCCCHHHHHHHHHHHhcCCcccCceeEEeeeeccc
Confidence                                                                             13456888874    


Q ss_pred             --e---CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEE---EeCCCCCCEEEEEeCCCeEEEE
Q 003579          102 --F---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI---MHPDTYLNKVIVGSQEGSLQLW  166 (809)
Q Consensus       102 --~---g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~l~~~~~dg~i~lw  166 (809)
                        +   -..|+.|.++|.|.|.|-+....    ..++......+..++   +..-.  -+|++++.||.|++.
T Consensus       189 ~~d~~a~scLViGTE~~~i~iLd~~af~i----l~~~~lpsvPv~i~~~G~~devd--yRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  189 SADEDAVSCLVIGTESGEIYILDPQAFTI----LKQVQLPSVPVFISVSGQYDEVD--YRIVVACRDGKIYTI  255 (257)
T ss_pred             ccCCCCcceEEEEecCCeEEEECchhhee----EEEEecCCCceEEEEEeeeeccc--eEEEEEeCCCEEEEE
Confidence              1   35799999999999999887766    555555544332222   22122  378889999988764

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.35  E-value=11  Score=41.20  Aligned_cols=167  Identities=16%  Similarity=0.224  Sum_probs=69.2

Q ss_pred             EEEEEeCC--eEEEEECCeEEEEEC-------C--eeEEEE-ccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCcccc
Q 003579           60 RALASYRD--YTFAAYGNHIAVVKR-------A--HQVATW-SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENL  127 (809)
Q Consensus        60 ~~la~~~~--~~~~a~g~~i~vw~~-------~--~~~~~~-~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~  127 (809)
                      ..+.+.+.  .-++++++++++|+-       .  .....+ .++...+.++      ++.....|.|+.|+--+.....
T Consensus        29 ~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v------~lv~p~~G~v~f~~~I~~~l~~  102 (422)
T PF08801_consen   29 CSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV------GLVKPKTGRVVFWESISHLLVL  102 (422)
T ss_dssp             -EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE------EEEE-TT-EEEEES-TT-TT--
T ss_pred             eEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE------EEEEcCCCCEEecccchhhhhc
Confidence            34445554  677788999999985       2  223334 4555555554      4455668999999865444321


Q ss_pred             ceeeeE---------EcCCcc-ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEE
Q 003579          128 APVGHV---------KLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA  197 (809)
Q Consensus       128 ~~~~~~---------~~~~~~-~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la  197 (809)
                      .....+         ...... ....-..|.+    ++++..+|+|.....+....++.+.-.          +...   
T Consensus       103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~----~I~~ts~GRif~~~~~~~~g~~~l~y~----------~~~~---  165 (422)
T PF08801_consen  103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG----FIVSTSTGRIFFLGIRDSNGKYELSYQ----------QLSG---  165 (422)
T ss_dssp             EEEE------------------EEEEEEETTT----EEEEETT--EEEEEE-TTS-EEEEE-T----------T------
T ss_pred             CccccccccccceeeecCCceEEECCCCceEE----EEEECCCCeEEEEeCCCCCCcEEEEEE----------cCcC---
Confidence            111111         111111 1112244444    677777788877776653344433221          1100   


Q ss_pred             EEeCCCeEEEEEeeCCeEEEE-E--eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC
Q 003579          198 VGCSDGKIHVHNVRYDEELVT-F--THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (809)
Q Consensus       198 ~g~~dg~i~iwd~~~~~~~~~-~--~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~  256 (809)
                            .....+...+..... +  .......|.+++..+..+ ++++.+.+|.|.+|++..
T Consensus       166 ------~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  166 ------RCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --------------------------------EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred             ------CccccccccCceeccccCCcccchhceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence                  000000000000000 0  111133488888888776 999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.18  E-value=21  Score=37.19  Aligned_cols=161  Identities=15%  Similarity=0.150  Sum_probs=93.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCc------EEEEECCCC-ceeeeeeCcccc--------cccCccccEEEEEEcCCCCEE
Q 003579          425 TAVKACTISACGNFAVLGTAGGW------IERFNLQSG-ISRGSYLDMSER--------SNYAHNGEVVGVACDSTNTLM  489 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~------i~i~~~~~~-~~~~~~~~~~~~--------~~~~h~~~v~~l~~~~~~~~l  489 (809)
                      +....+.+.+++..+++-+.+|.      ++.+++... ............        ....-....-+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            67889999965555566666666      666665541 011111000000        000111245588888888888


Q ss_pred             EEEeCc------CeEEEEECCCCceeeee----------------ecCCCeEEEEEeeCCCEEEEEeC-----CC--e--
Q 003579          490 ISAGYH------GDIKVWDFKGRDLKSRW----------------EVGCSLVKIVYHRVNGLLATVAD-----DL--V--  538 (809)
Q Consensus       490 ~s~~~d------g~i~iwd~~~~~~~~~~----------------~~~~~i~~~~~s~~~~~la~~~~-----d~--~--  538 (809)
                      ++.-.+      ..|+.++.. |+....+                ......-.++++|+|+.|.++.+     |+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            887777      778888866 5554443                12356788999999996666543     22  1  


Q ss_pred             -----EEE--EEcCC-CeEEEE----Eec-----CCCCeeeEEECCCCCEEEEE-----eCCCeEEEEEc
Q 003579          539 -----IRL--FDVVA-LRMVRK----FEG-----HTDRITDFCFSEDGKWLLSS-----GMDGSLRIWDV  586 (809)
Q Consensus       539 -----I~v--~d~~~-~~~~~~----~~~-----h~~~I~~l~fspdg~~l~s~-----s~D~~I~vwd~  586 (809)
                           +++  ||..+ ++....    +..     ....|+++.+-+++++|+-=     .....++|+.+
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence                 444  45544 323333    222     35678999999999987732     13445666644

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=91.15  E-value=30  Score=38.79  Aligned_cols=420  Identities=15%  Similarity=0.128  Sum_probs=176.1

Q ss_pred             EEEEEeCCCeEEEEeCC--CCceEE-------EEcC----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-------
Q 003579          153 KVIVGSQEGSLQLWNIS--TKKKLY-------EFKG----WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-------  212 (809)
Q Consensus       153 ~l~~~~~dg~i~lwd~~--~~~~~~-------~~~~----~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~-------  212 (809)
                      .|++++.+|.+.+....  +.+.+.       .+..    ....-..++..|.++.++++..+|.+.|+-+..       
T Consensus         2 ~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~   81 (504)
T PF10433_consen    2 SLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIA   81 (504)
T ss_dssp             EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-T
T ss_pred             EEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEeccccccccc
Confidence            46777777776664333  333211       1111    123456789999999999999999999999987       


Q ss_pred             C-eEEEEEeccCCCcEEEEEEec---C-CCCEEEEE--cCC--CcEEEEE--CCCcee------eee--eecccccceEE
Q 003579          213 D-EELVTFTHSMRGAVTALAFSS---D-GQPLLASG--ASS--GVISIWN--LEKRRL------QSV--IREAHDNAIIS  273 (809)
Q Consensus       213 ~-~~~~~~~~~~~~~V~~l~fs~---d-g~~~lasg--~~d--g~I~iwd--l~~~~~------~~~--~~~~h~~~V~~  273 (809)
                      . ....... ...+.|.+++|..   . ..+.++.-  ...  ..+..++  ...+..      ...  +...+..+ ..
T Consensus        82 ~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~  159 (504)
T PF10433_consen   82 FSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELP-SF  159 (504)
T ss_dssp             T---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TT-EE
T ss_pred             ccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCc-cE
Confidence            0 1111111 1257789999986   1 22244432  122  2344444  333211      000  11111222 22


Q ss_pred             EEEecC--CCEEEEEcCCCcEEEEEeeCCCCCceeEEecc--C-CCCCCeeEE-------EecCCCEEEEEECCCCEEEE
Q 003579          274 LHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--G-HSAPPLCIR-------FYANGRHILSAGQDRAFRLF  341 (809)
Q Consensus       274 l~~~~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~--~-h~~~v~~i~-------~~~~~~~l~s~~~dg~i~~w  341 (809)
                      +.-.|.  +-.|++ + ++.+.+-+.....+.........  . ...-+.+..       ...++..++.+..+|.+...
T Consensus       160 LIPlp~~~ggllV~-~-~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l  237 (504)
T PF10433_consen  160 LIPLPNPPGGLLVG-G-ENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLL  237 (504)
T ss_dssp             EEEE-TTT-SEEEE-E-SSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEE
T ss_pred             EEEcCCCCcEEEEE-C-CEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEE
Confidence            333333  334443 3 23333322222211112221111  1 112222222       23467789999999999988


Q ss_pred             EeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCC
Q 003579          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (809)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  421 (809)
                      .+.....  .+....           .... .++..++......  ..--.+.+..+++.+.-|.......-...     
T Consensus       238 ~l~~~~~--~i~i~~-----------~g~~-~~~~s~l~~l~~g--~d~lf~gs~~gds~l~~~~~~~l~~~~~~-----  296 (504)
T PF10433_consen  238 TLDNDGG--SISITY-----------LGTL-CSIASSLTYLKNG--GDYLFVGSEFGDSQLLQISLSNLEVLDSL-----  296 (504)
T ss_dssp             EEEEEEE--EEEEEE-----------EEE---S-ESEEEEESTT----EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred             EEEECCC--eEEEEE-----------cCCc-CChhheEEEEcCC--CEEEEEEEecCCcEEEEEeCCCcEEEEec-----
Confidence            8876553  110000           0000 1222222222211  11222333345555555553333322211     


Q ss_pred             CCCCCeEEEEEcCC---CC-------EEEEEe---CCCcEEEEECCCCceee--eeeCcccccccCccccEEEEEEcC-C
Q 003579          422 ENPTAVKACTISAC---GN-------FAVLGT---AGGWIERFNLQSGISRG--SYLDMSERSNYAHNGEVVGVACDS-T  485 (809)
Q Consensus       422 ~~~~~v~~v~~s~~---g~-------~l~~g~---~~g~i~i~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~l~~~~-~  485 (809)
                      .+-+++..+++.+.   +.       .+++++   .+|.+++..-  |....  ....   ....+ -..++.+.... +
T Consensus       297 ~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~---~~l~~-v~~iW~l~~~~~~  370 (504)
T PF10433_consen  297 PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELAS---SELPG-VTGIWTLKLSSSD  370 (504)
T ss_dssp             ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEE---EEEST-EEEEEEE-SSSSS
T ss_pred             cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeec---cCCCC-ceEEEEeeecCCC
Confidence            12377888887532   22       444443   3567776643  22222  1110   00001 23334443322 2


Q ss_pred             CCEEEEEeCcCeEEEEECC---CCceeeee-----ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-C
Q 003579          486 NTLMISAGYHGDIKVWDFK---GRDLKSRW-----EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-H  556 (809)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~---~~~~~~~~-----~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~-h  556 (809)
                      +.+++.+..+. -+++.+.   ..+.+...     ....+-..+.... ++.++=... ..|++.+...++....... .
T Consensus       371 ~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~  447 (504)
T PF10433_consen  371 HSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPA  447 (504)
T ss_dssp             BSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTEEEEEES-SEEEEEESSSTSEEEEEE-TT
T ss_pred             ceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCeEEEEec-CeEEEEECCCCeEEEEEeCCC
Confidence            45666666544 3455553   23332221     1111111222222 344444433 4588888887777766543 3


Q ss_pred             CCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee------eCcceEEEEEcC
Q 003579          557 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH------VDVSITALSLSP  608 (809)
Q Consensus       557 ~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~------~~~~v~~l~~sp  608 (809)
                      ...|.+.+...  .+++.+-.++.+.++.+..........      ....|.|+..+|
T Consensus       448 ~~~I~~a~~~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  448 GSIIVAASIND--PQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             S---SEEEESS--SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             CCeEEEEEECC--CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            44566666543  466666668889999988766643322      355688888776

...

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.14  E-value=1  Score=30.10  Aligned_cols=32  Identities=25%  Similarity=0.542  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCC---CEEEEEeCCCeEEEEEeeCC
Q 003579          182 SSISSCVSSPAL---DVVAVGCSDGKIHVHNVRYD  213 (809)
Q Consensus       182 ~~I~~l~~sp~~---~~la~g~~dg~i~iwd~~~~  213 (809)
                      ++|.++.|||..   ++|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58888888899999999853

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.10  E-value=3.2  Score=43.87  Aligned_cols=142  Identities=16%  Similarity=0.172  Sum_probs=89.0

Q ss_pred             CCCCEEEE-EeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC--------CEEEEEeCcCeEEEEECC
Q 003579          434 ACGNFAVL-GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--------TLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       434 ~~g~~l~~-g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--------~~l~s~~~dg~i~iwd~~  504 (809)
                      .+.+.++. |.....++-.|+..|+.+....        .|..-  -+.+.|..        +.|+--+..+..+| |-+
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~--------~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrI-DPR  545 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWD--------LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRI-DPR  545 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEee--------cCCcc--eeecCCchhHHhcCccceEEeecccceEEe-ccc
Confidence            34444433 4455677888888888887775        33332  45566643        34444444333333 322


Q ss_pred             -CCceeeeeecCCCeEEEEEe----eCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCC
Q 003579          505 -GRDLKSRWEVGCSLVKIVYH----RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (809)
Q Consensus       505 -~~~~~~~~~~~~~i~~~~~s----~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~  579 (809)
                       .|..+...+...-.+.-.|+    ..+.++|+++..|.|++||.-..+....+.+-...|..+..+.+|++|++.+. .
T Consensus       546 ~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~  624 (776)
T COG5167         546 ARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-N  624 (776)
T ss_pred             ccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence             33333333322222222222    34679999999999999998766666677888889999999999999887764 4


Q ss_pred             eEEEEEcC
Q 003579          580 SLRIWDVI  587 (809)
Q Consensus       580 ~I~vwd~~  587 (809)
                      ++.+-|++
T Consensus       625 yllL~d~~  632 (776)
T COG5167         625 YLLLTDVP  632 (776)
T ss_pred             eEEEEecc
Confidence            67777765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.07  E-value=2.7  Score=40.72  Aligned_cols=79  Identities=10%  Similarity=0.121  Sum_probs=53.6

Q ss_pred             eeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE-------e-------cCCCCeeeEEECCCCCEEEEE
Q 003579          510 SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-------E-------GHTDRITDFCFSEDGKWLLSS  575 (809)
Q Consensus       510 ~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~-------~-------~h~~~I~~l~fspdg~~l~s~  575 (809)
                      ..+..+.++..  +..++.++++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-|++-
T Consensus         7 P~i~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l   84 (219)
T PF07569_consen    7 PPIVLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL   84 (219)
T ss_pred             CcEecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence            34445555555  4456889999999999999999998765432       1       244567777777777766665


Q ss_pred             eCCCeEEEEEcCCccE
Q 003579          576 GMDGSLRIWDVILARQ  591 (809)
Q Consensus       576 s~D~~I~vwd~~~~~~  591 (809)
                      + +|..+.|+..-+..
T Consensus        85 s-ng~~y~y~~~L~~W   99 (219)
T PF07569_consen   85 S-NGDSYSYSPDLGCW   99 (219)
T ss_pred             e-CCCEEEecccccee
Confidence            5 46677777654433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.91  E-value=0.039  Score=57.28  Aligned_cols=139  Identities=16%  Similarity=0.168  Sum_probs=94.4

Q ss_pred             cEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEEeeCCeEEEEE
Q 003579          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-CSDGKIHVHNVRYDEELVTF  219 (809)
Q Consensus       141 ~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g-~~dg~i~iwd~~~~~~~~~~  219 (809)
                      ....+-|.+  ..+++++.+..+..|| +.++....... ++....++|..+++.+++. -..+.+.+||+.+... .++
T Consensus        38 i~~~w~~e~--~nlavaca~tiv~~YD-~agq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL  112 (615)
T KOG2247|consen   38 IIHRWRPEG--HNLAVACANTIVIYYD-KAGQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL  112 (615)
T ss_pred             ceeeEecCC--CceehhhhhhHHHhhh-hhcceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence            344566766  4488888888888998 45555555443 4556678888888877654 4568999999975432 112


Q ss_pred             eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc
Q 003579          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS  287 (809)
Q Consensus       220 ~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s  287 (809)
                      ..+....-.-+.|++.+. .++.|...|.+.|++..+.+.....- .|...++++++.+.+. .+.++
T Consensus       113 E~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~-vil~d  177 (615)
T KOG2247|consen  113 ESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY-VILCD  177 (615)
T ss_pred             hccCcchHHHHhhccCCc-cccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce-eeecC
Confidence            211122222377888777 78888899999999987776655543 4899999999988763 33333

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.90  E-value=1.4  Score=45.58  Aligned_cols=163  Identities=14%  Similarity=0.059  Sum_probs=100.3

Q ss_pred             CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeee--ec--C---CCeE-EEEEeeCCCEEEEEeCCCeEEEE-
Q 003579          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--EV--G---CSLV-KIVYHRVNGLLATVADDLVIRLF-  542 (809)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~--~---~~i~-~~~~s~~~~~la~~~~d~~I~v~-  542 (809)
                      .....|..+-..|+++.+..-+. ..+.++++.+..+....  +.  +   ..++ ++..-..|..+.+++.||.|.-| 
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            34566788889999998887666 77888988765443221  11  0   1111 11122345677888889888776 


Q ss_pred             EcCCC-----eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEE
Q 003579          543 DVVAL-----RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH  617 (809)
Q Consensus       543 d~~~~-----~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~  617 (809)
                      |...+     ..++.++-...++..+.--.+-+-+++-+..|++.++.....+.+-.-+.-..+.-+++||.+.+|++-.
T Consensus       297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~  376 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED  376 (733)
T ss_pred             eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence            54432     1233333222334333333334556677788888888766555554434444678899999999998865


Q ss_pred             eCCCeEEEeecCcccCCCCC
Q 003579          618 VDQNGVYLWVNRCMFSGDSN  637 (809)
Q Consensus       618 ~d~~~i~lW~~~~~~~~~~~  637 (809)
                      ..  .|+++.+...+-.++.
T Consensus       377 ~g--ki~~~~l~Nr~Peisw  394 (733)
T COG4590         377 QG--KIRLAQLENRNPEISW  394 (733)
T ss_pred             CC--ceEEEEecCCCCCccH
Confidence            44  4999988776665553

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.87  E-value=0.026  Score=58.50  Aligned_cols=146  Identities=14%  Similarity=0.222  Sum_probs=101.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeee
Q 003579          185 SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (809)
Q Consensus       185 ~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~  264 (809)
                      ....|.|.+.-+++++.+..+..||-. ++.......  .+....++|..+|.-.++.+-..+.+.+||+.+......-.
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~--tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP--TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC--chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            345677777779999999999999843 555444443  56778899998888566666788999999997663322211


Q ss_pred             cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEE
Q 003579          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (809)
Q Consensus       265 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~  339 (809)
                       +-...-.-+.|++..+.++.+...+.+.+++....    |.......|...++++++.+.+ +.+.++.|..+.
T Consensus       115 -gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~  183 (615)
T KOG2247|consen  115 -GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLS  183 (615)
T ss_pred             -cCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccc-eeeecCcHHHHH
Confidence             22222223789999999999988999999965544    3333333499999999999877 455555555443

>PHA02790 Kelch-like protein; Provisional

Probab=90.73  E-value=12  Score=41.51  Aligned_cols=93  Identities=13%  Similarity=0.048  Sum_probs=41.8

Q ss_pred             EEEEEcCCC-----cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCC--cEEEEEeeCCCCCceeEEecc
Q 003579          239 LLASGASSG-----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--SIKMWIFDTTDGDPRLLRFRS  311 (809)
Q Consensus       239 ~lasg~~dg-----~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~--~i~vw~~~~~~~~~~~~~~~~  311 (809)
                      ++++|+.++     .+..||..+++-...-.......-.+++ .-++.+.+.||.++  ++..|+  .....+..+..+.
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~yd--p~~n~W~~~~~l~  350 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWF--HGDAAWVNMPSLL  350 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEE--CCCCeEEECCCCC
Confidence            667777542     5777888776433222111111111222 23666777777543  455554  3333333322221


Q ss_pred             CCCCCCeeEEEecCCCEEEEEECCC
Q 003579          312 GHSAPPLCIRFYANGRHILSAGQDR  336 (809)
Q Consensus       312 ~h~~~v~~i~~~~~~~~l~s~~~dg  336 (809)
                      ...... +++ .-+|+..+.||.++
T Consensus       351 ~~r~~~-~~~-~~~g~IYviGG~~~  373 (480)
T PHA02790        351 KPRCNP-AVA-SINNVIYVIGGHSE  373 (480)
T ss_pred             CCCccc-EEE-EECCEEEEecCcCC
Confidence            111111 111 22566666776543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.51  E-value=9.2  Score=42.47  Aligned_cols=80  Identities=10%  Similarity=0.087  Sum_probs=50.9

Q ss_pred             CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 003579          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR  551 (809)
Q Consensus       472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~  551 (809)
                      .|.+.|--+..+..+..++--...-.+.++|+.+.+....+   .-.+-+.|-|.+..+++-+.|.-...|+++-.+.+.
T Consensus       335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil---nfcsymqwvp~sdvivaqn~dnl~iwyn~d~peqvt  411 (1636)
T KOG3616|consen  335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL---NFCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQVT  411 (1636)
T ss_pred             cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH---HHhhhheeccCcceEEecCCCceEEEecCCcchhhe
Confidence            78888888888777766766666667888888765432222   123446788877777766666544444666555544


Q ss_pred             EEe
Q 003579          552 KFE  554 (809)
Q Consensus       552 ~~~  554 (809)
                      .+.
T Consensus       412 ~~k  414 (1636)
T KOG3616|consen  412 MFK  414 (1636)
T ss_pred             eeE
Confidence            443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.41  E-value=16  Score=34.61  Aligned_cols=144  Identities=15%  Similarity=0.230  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCEEEEEeCcCeEEEEECC--CCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---C---eEEEE---EcC-
Q 003579          478 VGVACDSTNTLMISAGYHGDIKVWDFK--GRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---L---VIRLF---DVV-  545 (809)
Q Consensus       478 ~~l~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~---~I~v~---d~~-  545 (809)
                      ..++..+. +.|..+...+.|.+|++.  ..+++.++..-+.+..+.++..|++|++--.+   .   .+|+|   ... 
T Consensus        21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence            34444432 344444666789999988  45667777777999999999999999987432   2   56665   221 


Q ss_pred             -CCeEEE-EEecC---------------------CCCeeeEEECC-CCCEEEEEeCCCeEEEEEcCCccE-EE---Eee-
Q 003579          546 -ALRMVR-KFEGH---------------------TDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQ-ID---AIH-  596 (809)
Q Consensus       546 -~~~~~~-~~~~h---------------------~~~I~~l~fsp-dg~~l~s~s~D~~I~vwd~~~~~~-i~---~~~-  596 (809)
                       ....++ ++-||                     ..++.+++-.| .|+.|+ |+ ++.+.+|.+..... ..   .+. 
T Consensus       100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDF  177 (215)
T PF14761_consen  100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDF  177 (215)
T ss_pred             ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEec
Confidence             112222 23332                     22456666666 455444 54 56789998765433 11   111 


Q ss_pred             ------eCcc--eEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579          597 ------VDVS--ITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       597 ------~~~~--v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (809)
                            ++..  +..+++.  +.|+|..+...  +++..+
T Consensus       178 e~~l~~~~~~~~p~~v~ic--~~yiA~~s~~e--v~Vlkl  213 (215)
T PF14761_consen  178 ERSLIDHIDNFKPTQVAIC--EGYIAVMSDLE--VLVLKL  213 (215)
T ss_pred             hhhhhheecCceEEEEEEE--eeEEEEecCCE--EEEEEE
Confidence                  1222  5566663  66888887765  666543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.29  E-value=19  Score=35.26  Aligned_cols=261  Identities=11%  Similarity=0.041  Sum_probs=152.7

Q ss_pred             CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~  303 (809)
                      ...-..++-.+||. +-.++...|.|--.|..+|+....-. +....-..+..-|||..-++-+..   -|-.++..+..
T Consensus        61 G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~---aI~R~dpkt~e  135 (353)
T COG4257          61 GSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL---AIGRLDPKTLE  135 (353)
T ss_pred             CCCccccccCCCCc-eEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc---eeEEecCcccc
Confidence            34567788889998 77788888888888998888766554 556666777778888766654332   23333443322


Q ss_pred             ceeEEe-ccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579          304 PRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (809)
Q Consensus       304 ~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (809)
                      ...... ...-........|.+.|+.-+++.. |.---.|.                                       
T Consensus       136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP---------------------------------------  175 (353)
T COG4257         136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP---------------------------------------  175 (353)
T ss_pred             eEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCc---------------------------------------
Confidence            111111 1122345667778888876666541 11000000                                       


Q ss_pred             cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (809)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~  462 (809)
                                     ..+.+++|+...              ......++..|+|..-++...+..|...|..++.. ..+
T Consensus       176 ---------------a~~~i~vfpaPq--------------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~  225 (353)
T COG4257         176 ---------------ARNVISVFPAPQ--------------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVV  225 (353)
T ss_pred             ---------------ccCceeeeccCC--------------CCCCcceEECCCCcEEEEeccccceEEcccccCCc-cee
Confidence                           112233333221              15567889999999999988888898888887733 222


Q ss_pred             eCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEeeCCCEEEEEeCCCeE
Q 003579          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVI  539 (809)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~I  539 (809)
                      ...     ......-..+-.+|.++.-++....+.+..+|-.... -..+...   ....++.....++.-.+-...+.|
T Consensus       226 p~P-----~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai  299 (353)
T COG4257         226 PQP-----NALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAI  299 (353)
T ss_pred             cCC-----CcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCce
Confidence            211     1223445667778889888888778888888765443 2233322   345556666556655555556667


Q ss_pred             EEEEcCCCeEEEEEecCCCCeeeEEEC
Q 003579          540 RLFDVVALRMVRKFEGHTDRITDFCFS  566 (809)
Q Consensus       540 ~v~d~~~~~~~~~~~~h~~~I~~l~fs  566 (809)
                      .-+|-++.+ ...+.........+.+.
T Consensus       300 ~rfdpeta~-ftv~p~pr~n~gn~ql~  325 (353)
T COG4257         300 GRFDPETAR-FTVLPIPRPNSGNIQLD  325 (353)
T ss_pred             eecCcccce-EEEecCCCCCCCceecc
Confidence            777766543 33444433333344443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.21  E-value=16  Score=34.21  Aligned_cols=172  Identities=9%  Similarity=0.057  Sum_probs=88.0

Q ss_pred             EEcCCeEEEEEEc--CCeEEEEEcCccEEEEecCCCCCCcE--EEEEeCCeEEEEE-C-CeEEEEECCe--eEEEEcccc
Q 003579           22 QRLGTENFVTVSV--GKAFHIYNCAKLNLVLVGPQLPKKIR--ALASYRDYTFAAY-G-NHIAVVKRAH--QVATWSRHS   93 (809)
Q Consensus        22 ~~~~~~~~i~~~~--~~~i~iwd~~~~~~~~~~~~~~~~I~--~la~~~~~~~~a~-g-~~i~vw~~~~--~~~~~~~h~   93 (809)
                      .+.++..+.+++.  ...|++||+.+++..+..+-.+..+-  .+.-..|..|.-+ . +.-.++|...  ++.++ .-.
T Consensus        52 ~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~-~y~  130 (262)
T COG3823          52 EYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF-SYE  130 (262)
T ss_pred             eeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc-ccC
Confidence            3456777777765  34599999999988876643222221  1233344444333 1 1234444332  22221 123


Q ss_pred             ccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeC----CCCCCEEEEEeCCCeEEEEeCC
Q 003579           94 AKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHP----DTYLNKVIVGSQEGSLQLWNIS  169 (809)
Q Consensus        94 ~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~l~~~~~dg~i~lwd~~  169 (809)
                      +.=..++-+++.|+..+...++..-|.++...    ..++...........++.    ++  ...+-.-.+..|...+..
T Consensus       131 GeGWgLt~d~~~LimsdGsatL~frdP~tfa~----~~~v~VT~~g~pv~~LNELE~VdG--~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         131 GEGWGLTSDDKNLIMSDGSATLQFRDPKTFAE----LDTVQVTDDGVPVSKLNELEWVDG--ELYANVWQTTRIARIDPD  204 (262)
T ss_pred             CcceeeecCCcceEeeCCceEEEecCHHHhhh----cceEEEEECCeecccccceeeecc--EEEEeeeeecceEEEcCC
Confidence            34466777888888887666677777766555    222222111111111110    11  011111223345555666


Q ss_pred             CCceEEEE------------cCCCCCEEEEEEcCCCCEEEEEe
Q 003579          170 TKKKLYEF------------KGWGSSISSCVSSPALDVVAVGC  200 (809)
Q Consensus       170 ~~~~~~~~------------~~~~~~I~~l~~sp~~~~la~g~  200 (809)
                      +|+.+..+            ..|..-...+++.|+++.+...+
T Consensus       205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            66665443            23455677889999886555544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.86  E-value=12  Score=35.48  Aligned_cols=103  Identities=14%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             CEEEEEeCCCeEEEEEcC--CCeEEEEEecCCCCeeeEEECCCCCEEEEEeC---CC---eEEEE---EcC--Ccc----
Q 003579          528 GLLATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DG---SLRIW---DVI--LAR----  590 (809)
Q Consensus       528 ~~la~~~~d~~I~v~d~~--~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~---D~---~I~vw---d~~--~~~----  590 (809)
                      +.|.++.....|.+|++.  ..+.+.+|.. -+.|..+.++..|.||+|-=.   ..   .+|+|   +..  ...    
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455555677889999988  3456667764 488999999999999998532   22   67775   222  111    


Q ss_pred             -----------------EEEE--eeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecCcccC
Q 003579          591 -----------------QIDA--IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS  633 (809)
Q Consensus       591 -----------------~i~~--~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~  633 (809)
                                       .+..  +....++.+++-.|-..-|+.|+.+  .+.||..+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~  167 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTI  167 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEE
Confidence                             1111  2223457888888844445555555  499999875554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.59  E-value=1.7  Score=28.97  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=31.7

Q ss_pred             CCCCEEEEEe-CCCeEEEEEcCCccEEEEeeeCcceEEEEEc
Q 003579          567 EDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLS  607 (809)
Q Consensus       567 pdg~~l~s~s-~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~s  607 (809)
                      |++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            6788776655 5789999999999999888876556666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=89.45  E-value=42  Score=37.92  Aligned_cols=151  Identities=17%  Similarity=0.250  Sum_probs=84.6

Q ss_pred             ccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceee--eeecCCCeEEE---EEee------CCCEEEEEeC-C---C
Q 003579          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCSLVKI---VYHR------VNGLLATVAD-D---L  537 (809)
Q Consensus       473 h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~i~~~---~~s~------~~~~la~~~~-d---~  537 (809)
                      -...|.++.+.++++.+++.-.+|.|.+||+..+....  .+...... .+   .|-+      ...++++.+. +   -
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~-~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSI-NVSYSKFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccc-ceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence            35788999999999999999999999999994332222  22111111 11   1211      1334444443 2   3


Q ss_pred             eEEEEEc-CCCeEEEEEe---cCCCCeeeEEECC-CCCEEEEEeCCCeEEEEEcCCccEEEEeeeCc-------ceEEEE
Q 003579          538 VIRLFDV-VALRMVRKFE---GHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALS  605 (809)
Q Consensus       538 ~I~v~d~-~~~~~~~~~~---~h~~~I~~l~fsp-dg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~-------~v~~l~  605 (809)
                      ..+++.+ .....+.++.   -+.....+..|.- +|+...-  .+++|.+|++++-+....+..+.       .+.++.
T Consensus       207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~  284 (670)
T PF10395_consen  207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK  284 (670)
T ss_pred             EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence            5677777 1122222332   1222223333332 5654433  67899999999988888777652       233333


Q ss_pred             EcCCCCeEEEEEeCCCeEEEeecC
Q 003579          606 LSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       606 ~spdg~~lat~~~d~~~i~lW~~~  629 (809)
                      - |+-+++.-+..+  .|++.+.+
T Consensus       285 ~-~s~nRvLLs~~n--kIyLld~~  305 (670)
T PF10395_consen  285 P-PSPNRVLLSVNN--KIYLLDLK  305 (670)
T ss_pred             c-CCCCeEEEEcCC--EEEEEeeh
Confidence            2 333344444333  49999875

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.42  E-value=1.6  Score=29.26  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             CcEEEEEEecCCC--CEEEEEcCCCcEEEEECCCc
Q 003579          225 GAVTALAFSSDGQ--PLLASGASSGVISIWNLEKR  257 (809)
Q Consensus       225 ~~V~~l~fs~dg~--~~lasg~~dg~I~iwdl~~~  257 (809)
                      +.|.++.|+|+..  .+|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999997543  58888888999999999853

It contains a characteristic DLL sequence motif.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.34  E-value=14  Score=32.12  Aligned_cols=120  Identities=17%  Similarity=0.104  Sum_probs=74.6

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC-----CCCEEEEEeCcCeEEEEECCCC
Q 003579          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKGR  506 (809)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~dg~i~iwd~~~~  506 (809)
                      |.....-|++++..|.|.+++.........-. ......-.-...|++++-.+     ....|+.|+. ..|..||+...
T Consensus         6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~-~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N   83 (136)
T PF14781_consen    6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQ-DSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN   83 (136)
T ss_pred             eCCCceeEEEEecCCEEEEECCCccccccccc-cCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence            44445568888999999999876543222100 00000113456788887654     2355665554 67899999988


Q ss_pred             ceeeeeecCCCeEEEEEeeC---CCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 003579          507 DLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMVRKF  553 (809)
Q Consensus       507 ~~~~~~~~~~~i~~~~~s~~---~~~la~~~~d~~I~v~d~~~~~~~~~~  553 (809)
                      .-+...+.+..+.++.+-.-   ..-++..+.+..|.-||.+..+...+.
T Consensus        84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            77777677778888877542   234555556778888887766554443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.74  E-value=6.6  Score=46.81  Aligned_cols=139  Identities=15%  Similarity=0.293  Sum_probs=91.1

Q ss_pred             CCCeEEEEeCCCCceEEEEcCCCCCEEEEE--------EcCCCCEEEEEeCCCeEEEEEeeCCeEE---------EEEec
Q 003579          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCV--------SSPALDVVAVGCSDGKIHVHNVRYDEEL---------VTFTH  221 (809)
Q Consensus       159 ~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~--------~sp~~~~la~g~~dg~i~iwd~~~~~~~---------~~~~~  221 (809)
                      .|+.+.+||.+++.....+.+....|..+.        |-|.-+++.+-..--.|.++-+..++..         .++..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            578899999999888888888777777765        3344455555555566777766533211         11222


Q ss_pred             cCCCcEEEEEEecCCCCEEEEEcCCCcEE--EEECCCc---e-e----------------eeeeecccccceEEEEEecC
Q 003579          222 SMRGAVTALAFSSDGQPLLASGASSGVIS--IWNLEKR---R-L----------------QSVIREAHDNAIISLHFFAN  279 (809)
Q Consensus       222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~--iwdl~~~---~-~----------------~~~~~~~h~~~V~~l~~~~~  279 (809)
                      . .-.|.|+....+|+ ++.+ +.||.|.  +|....+   + +                +-.+...+..+|..+.....
T Consensus       177 d-g~~V~~I~~t~nGR-IF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  177 D-GVSVNCITYTENGR-IFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             C-CceEEEEEeccCCc-EEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            1 45789999888888 5554 5566443  1222222   1 1                01111256779999999888


Q ss_pred             CCEEEEEcCCCcEEEEEeeCC
Q 003579          280 EPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       280 ~~~l~s~s~d~~i~vw~~~~~  300 (809)
                      ...+.+-+..++|.+|++...
T Consensus       254 R~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             cceeeeeccCceEEEEEccCC
Confidence            889999999999999998764

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.70  E-value=11  Score=40.23  Aligned_cols=29  Identities=17%  Similarity=0.027  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFN  452 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~  452 (809)
                      .-.|..+.+++.|..++..+.+|.+.++=
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence            45678889999999999999999776654

>PHA02790 Kelch-like protein; Provisional

Probab=88.46  E-value=29  Score=38.48  Aligned_cols=180  Identities=7%  Similarity=-0.057  Sum_probs=85.7

Q ss_pred             cCCeEEEEEEcC-----CeEEEEEcCccEEEEecCCC-CCCcEEEEEeCCeEEEEECC----eEEEEECCeeEEE----E
Q 003579           24 LGTENFVTVSVG-----KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGN----HIAVVKRAHQVAT----W   89 (809)
Q Consensus        24 ~~~~~~i~~~~~-----~~i~iwd~~~~~~~~~~~~~-~~~I~~la~~~~~~~~a~g~----~i~vw~~~~~~~~----~   89 (809)
                      .++..+++++.+     .++..||..+.+-....+-. +..-.+++...+..|++.|.    .+..|+..+..-.    +
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            556667777653     35778999887765544321 22223445556667766653    2777775432111    2


Q ss_pred             ccccccEEEEEEeCCEEEEEeCCC---cEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579           90 SRHSAKVNLLLLFGEHILSIDIDG---NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (809)
Q Consensus        90 ~~h~~~V~~l~~~g~~l~s~~~dg---~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw  166 (809)
                      .........+..+|...+.|+.++   .+..||..+.+-..  .........  ..++..-++   +|++.+  |.+.+|
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~~~m~~~r~--~~~~~~~~~---~IYv~G--G~~e~y  420 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF--GPSTYYPHY--KSCALVFGR---RLFLVG--RNAEFY  420 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe--CCCCCCccc--cceEEEECC---EEEEEC--CceEEe
Confidence            211112222334555556666543   46778876543211  111111111  112223333   555544  457788


Q ss_pred             eCCCCce--EEEEcCCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEeeCCe
Q 003579          167 NISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDE  214 (809)
Q Consensus       167 d~~~~~~--~~~~~~~~~~I~~l~~sp~~~~la~g~~d-----g~i~iwd~~~~~  214 (809)
                      |.++.+=  +..+.........+  .-+++..++|+.+     ..+..||..+++
T Consensus       421 dp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        421 CESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             cCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            8876532  11122111222222  2356677777654     345566655443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.41  E-value=42  Score=36.50  Aligned_cols=72  Identities=21%  Similarity=0.153  Sum_probs=45.3

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCe--E----EEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCccEEEEeeeC
Q 003579          526 VNGLLATVADDLVIRLFDVVALR--M----VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVD  598 (809)
Q Consensus       526 ~~~~la~~~~d~~I~v~d~~~~~--~----~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~~~~~~  598 (809)
                      ++.+|+.+-..+.|+...++..+  .    ...|.. .++|.++..+||| .+.+..+.+|.++=   +++.....+..+
T Consensus       368 ~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~~---~~~~~~~~~~~~  443 (454)
T TIGR03606       368 ENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQK---DDGSVTNTLENP  443 (454)
T ss_pred             CCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcccc---CCCCceeEecCC
Confidence            36788888888888888886442  2    233444 6799999999997 54455556665432   334444444443


Q ss_pred             cce
Q 003579          599 VSI  601 (809)
Q Consensus       599 ~~v  601 (809)
                      ..|
T Consensus       444 ~~~  446 (454)
T TIGR03606       444 GSI  446 (454)
T ss_pred             CeE
Confidence            333

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.78  E-value=40  Score=35.53  Aligned_cols=197  Identities=16%  Similarity=0.224  Sum_probs=111.3

Q ss_pred             eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc----CCCCE--EEEEe-CC---CcEEEEECCC--Cce
Q 003579          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS----ACGNF--AVLGT-AG---GWIERFNLQS--GIS  458 (809)
Q Consensus       391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~~g~~--l~~g~-~~---g~i~i~~~~~--~~~  458 (809)
                      .++.+....+-+.+|++..+.+....       .+....+.+-    -.|+.  +++++ .+   ..|++|.+..  +..
T Consensus        69 SlIigTdK~~GL~VYdL~Gk~lq~~~-------~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L  141 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDGKELQSLP-------VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL  141 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS-EEEEE--------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred             ceEEEEeCCCCEEEEcCCCcEEEeec-------CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence            35555555678889998876653221       1333444332    13433  33443 32   4688887753  332


Q ss_pred             eeeeeCcccccccCccccEEEEEE--cC-CCC-EEEEEeCcCeEEEEECC---CC----ceeeeeecCCCeEEEEEeeCC
Q 003579          459 RGSYLDMSERSNYAHNGEVVGVAC--DS-TNT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVN  527 (809)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~~-~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~i~~~~~s~~~  527 (809)
                       ..+..... ........+.++|+  ++ +|+ +++..+.+|.+..|.+.   .+    ++++++...+.+..|+.....
T Consensus       142 -~~v~~~~~-p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~  219 (381)
T PF02333_consen  142 -TDVTDPAA-PIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET  219 (381)
T ss_dssp             -EE-CBTTC--EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred             -eEcCCCCc-ccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence             22211000 00112235778886  33 344 56667789998888764   33    467888888999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCC-----CeEEEEEec--CCCCeeeEEEC--CCC-CEEEEEe-CCCeEEEEEcCC-ccEEEEe
Q 003579          528 GLLATVADDLVIRLFDVVA-----LRMVRKFEG--HTDRITDFCFS--EDG-KWLLSSG-MDGSLRIWDVIL-ARQIDAI  595 (809)
Q Consensus       528 ~~la~~~~d~~I~v~d~~~-----~~~~~~~~~--h~~~I~~l~fs--pdg-~~l~s~s-~D~~I~vwd~~~-~~~i~~~  595 (809)
                      ..|.++-++.-|+-|+.+.     ++.+....+  ....|-.|++-  ++| .||+.++ .+++..||+... ...+..|
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            9999999999999998862     233433333  34567777774  344 3565554 678999999875 3445555


Q ss_pred             e
Q 003579          596 H  596 (809)
Q Consensus       596 ~  596 (809)
                      +
T Consensus       300 ~  300 (381)
T PF02333_consen  300 R  300 (381)
T ss_dssp             E
T ss_pred             E
Confidence            4

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=87.68  E-value=54  Score=38.68  Aligned_cols=76  Identities=13%  Similarity=0.034  Sum_probs=54.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee----eCccccc-------ccCccccEEEEEEcCCCCEEEEE
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY----LDMSERS-------NYAHNGEVVGVACDSTNTLMISA  492 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~----~~~~~~~-------~~~h~~~v~~l~~~~~~~~l~s~  492 (809)
                      ...|.+++...-+.++++...||+|.++|-.+-+.....    .......       ...+...+..++|+|.+..++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            367889999889999999999999999998877655444    1111000       01112245568899999999999


Q ss_pred             eCcCeEE
Q 003579          493 GYHGDIK  499 (809)
Q Consensus       493 ~~dg~i~  499 (809)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            9888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.61  E-value=30  Score=34.00  Aligned_cols=235  Identities=13%  Similarity=0.075  Sum_probs=141.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~  260 (809)
                      ...-..++.+|||.+-.++...|.|--.|..+|+....-... ...-..+..-|||. .-++-+.. -|.-.|-++....
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~-Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt  137 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS-GASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVT  137 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCC-CCCCceEEECCCCC-eeEecCcc-eeEEecCcccceE
Confidence            345567788999999999888888888888888765543332 45667788888887 33332222 4555565554332


Q ss_pred             e-eeeccc-ccceEEEEEecCCCEEEEEcC---------CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579          261 S-VIREAH-DNAIISLHFFANEPVLMSASA---------DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (809)
Q Consensus       261 ~-~~~~~h-~~~V~~l~~~~~~~~l~s~s~---------d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  329 (809)
                      . .+...| ........|.+.|++-+++..         .+.|++|..              ......+.|+-.|+|..-
T Consensus       138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa--------------PqG~gpyGi~atpdGsvw  203 (353)
T COG4257         138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA--------------PQGGGPYGICATPDGSVW  203 (353)
T ss_pred             EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc--------------CCCCCCcceEECCCCcEE
Confidence            2 111122 456778889999988887752         123333321              123456778888888777


Q ss_pred             EEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeee
Q 003579          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (809)
Q Consensus       330 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (809)
                      ++.-.+..|-..|..... ...                                                          
T Consensus       204 yaslagnaiaridp~~~~-aev----------------------------------------------------------  224 (353)
T COG4257         204 YASLAGNAIARIDPFAGH-AEV----------------------------------------------------------  224 (353)
T ss_pred             EEeccccceEEcccccCC-cce----------------------------------------------------------
Confidence            766666666666644331 111                                                          


Q ss_pred             eeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEE
Q 003579          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (809)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  489 (809)
                             +..........+.+..+|.|+.-++-...|.+..||.+... -.++.      +.+.+..-.++.++..++.-
T Consensus       225 -------~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp------LPgs~arpys~rVD~~grVW  290 (353)
T COG4257         225 -------VPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP------LPGSKARPYSMRVDRHGRVW  290 (353)
T ss_pred             -------ecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee------CCCCCCCcceeeeccCCcEE
Confidence                   11111212344556667778888887788899999887655 22332      23455556677777776655


Q ss_pred             EEEeCcCeEEEEECCC
Q 003579          490 ISAGYHGDIKVWDFKG  505 (809)
Q Consensus       490 ~s~~~dg~i~iwd~~~  505 (809)
                      .+-...|.|.-+|-.+
T Consensus       291 ~sea~agai~rfdpet  306 (353)
T COG4257         291 LSEADAGAIGRFDPET  306 (353)
T ss_pred             eeccccCceeecCccc
Confidence            5544455555555443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.23  E-value=49  Score=35.98  Aligned_cols=101  Identities=14%  Similarity=0.121  Sum_probs=60.0

Q ss_pred             ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCcee--eee----e--cCCCeEEEEEeeCC------CEEEEEe------
Q 003579          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRW----E--VGCSLVKIVYHRVN------GLLATVA------  534 (809)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~--~~~~i~~~~~s~~~------~~la~~~------  534 (809)
                      ...++|+|.|+++++++--..|.|++++-.++...  ..+    .  .......++++|+-      .+|.+..      
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            45688999999988877665699999986554321  111    1  24678899999874      3444432      


Q ss_pred             ----CCCeEEEEEcCCC-------e-EEEEEe---cCCCCeeeEEECCCCCEEEEEeC
Q 003579          535 ----DDLVIRLFDVVAL-------R-MVRKFE---GHTDRITDFCFSEDGKWLLSSGM  577 (809)
Q Consensus       535 ----~d~~I~v~d~~~~-------~-~~~~~~---~h~~~I~~l~fspdg~~l~s~s~  577 (809)
                          ....|.-|.+...       + ++..+.   .|.  -..|+|.|||.+.++.+.
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECC
Confidence                1234444544311       1 111121   233  346789999987776554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.22  E-value=25  Score=40.79  Aligned_cols=28  Identities=14%  Similarity=0.116  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003579          424 PTAVKACTISACGNFAVLGTAGGWIERF  451 (809)
Q Consensus       424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~  451 (809)
                      .-.|..+.++++|++++..+..|...+.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~  111 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLE  111 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            3678999999999999998887744443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.61  E-value=46  Score=35.04  Aligned_cols=124  Identities=13%  Similarity=0.089  Sum_probs=58.0

Q ss_pred             CeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCC------CeEEEEEcCC----CeEEEEEec-----CCC
Q 003579          496 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD------LVIRLFDVVA----LRMVRKFEG-----HTD  558 (809)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d------~~I~v~d~~~----~~~~~~~~~-----h~~  558 (809)
                      ..+..||..+.+-...-...  ......+..-++++.+.|+.+      ..+.++++..    +..+..+..     |.+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~  247 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG  247 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence            45788887765443322211  111222334467777777643      1345565532    222222211     111


Q ss_pred             CeeeEEECCCCCEEEEEeCC----------------------CeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEE
Q 003579          559 RITDFCFSEDGKWLLSSGMD----------------------GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLAT  615 (809)
Q Consensus       559 ~I~~l~fspdg~~l~s~s~D----------------------~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat  615 (809)
                      .....+...+++..+.|+.+                      ..+.+||..+.+....-..+.+ ....+..-+++.++.
T Consensus       248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~  327 (346)
T TIGR03547       248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLI  327 (346)
T ss_pred             ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEE
Confidence            11111223477777887753                      1467888877654333222222 112223346666777


Q ss_pred             EEeC
Q 003579          616 AHVD  619 (809)
Q Consensus       616 ~~~d  619 (809)
                      ++.+
T Consensus       328 GG~~  331 (346)
T TIGR03547       328 GGEN  331 (346)
T ss_pred             eccC
Confidence            6654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.44  E-value=21  Score=37.53  Aligned_cols=236  Identities=15%  Similarity=0.181  Sum_probs=116.9

Q ss_pred             EeCCEEEEEeCCCcEEEEEcCCCcccc-ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC----ceEE
Q 003579          101 LFGEHILSIDIDGNMFIWAFKGIEENL-APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK----KKLY  175 (809)
Q Consensus       101 ~~g~~l~s~~~dg~i~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~----~~~~  175 (809)
                      ..|+.-+--+.||.=..|.+....... .++++.......+ .-+-.|.+. ..++.|..+|.+.+....-.    .+-.
T Consensus        78 ~~G~~a~l~~N~g~Gvf~~l~~~~aPAgs~I~~qal~~ppv-~wa~~~~gq-p~~alglsngqv~v~qp~~s~t~p~pg~  155 (733)
T COG4590          78 AYGENAFLMSNDGVGVFWSLRSVSAPAGSPIQTQALGFPPV-LWAQTPPGQ-PWFALGLSNGQVAVVQPQLSHTMPTPGR  155 (733)
T ss_pred             cccceeEEEecCCccEEEEecccCCCCCCchhhhhcCCCCc-ccccCCCCC-ceEEEeccCCeEEEEeccccccCCCCCc
Confidence            345555555667777778776543211 1233322222211 112223343 67888999999999864311    1112


Q ss_pred             EEcCCCCCEEEEEEcCCCC--------EEEEEeCCCeEEEEEee-----------CCe-EEEEEeccCCCcEEEEEEecC
Q 003579          176 EFKGWGSSISSCVSSPALD--------VVAVGCSDGKIHVHNVR-----------YDE-ELVTFTHSMRGAVTALAFSSD  235 (809)
Q Consensus       176 ~~~~~~~~I~~l~~sp~~~--------~la~g~~dg~i~iwd~~-----------~~~-~~~~~~~~~~~~V~~l~fs~d  235 (809)
                      .|...   -.-++..++|+        +...+..+....+++..           +.+ .+..+... ...|..+-..||
T Consensus       156 ~Fp~g---~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~-~~~v~qllL~Pd  231 (733)
T COG4590         156 EFPPG---LEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVP-FSDVSQLLLTPD  231 (733)
T ss_pred             cCCCC---CCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCC-ccchHhhEECCC
Confidence            22211   11122333332        22233333333344332           112 22223222 457888889999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCceeeee--eecccc---cceE-EEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE--
Q 003579          236 GQPLLASGASSGVISIWNLEKRRLQSV--IREAHD---NAII-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL--  307 (809)
Q Consensus       236 g~~~lasg~~dg~I~iwdl~~~~~~~~--~~~~h~---~~V~-~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~--  307 (809)
                      |+ .|..-+. ..+.++++.+......  ......   ..|+ .+.....+.-|..++.||.|..|-.-..++.+++-  
T Consensus       232 g~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~  309 (733)
T COG4590         232 GK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHI  309 (733)
T ss_pred             CC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceee
Confidence            99 5555443 6788888876643221  111111   1222 23334567778889999999999433333333332  


Q ss_pred             EeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579          308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~  344 (809)
                      +.++-...++..+.-..+.+-+++-+..|++..+...
T Consensus       310 R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st  346 (733)
T COG4590         310 RNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYST  346 (733)
T ss_pred             eccccCcccceeeccccccceEEEEcCCCceeeeecc
Confidence            2222222333333333345567777778887777643

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=86.01  E-value=27  Score=43.23  Aligned_cols=153  Identities=10%  Similarity=0.142  Sum_probs=89.9

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (809)
Q Consensus       179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~  258 (809)
                      .|...++.+..++++..+=.  .|+.++.||....+-.. .......+++.|+-.-||+ +.|   .++.. +-|+..+.
T Consensus       360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qgdG~-lYA---k~~~~-l~nLSs~~  431 (1774)
T PF11725_consen  360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQGDGK-LYA---KDDDT-LVNLSSGQ  431 (1774)
T ss_pred             HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccCCCc-eEe---cCCCc-eeecCCCC
Confidence            45666777777888776655  46778888766442211 1122234566666666776 333   22221 34555443


Q ss_pred             eeeeeecccccceEEEEEecCCCE-EEEEcCCCcEEEEEeeCCCCCcee----EEeccCCCCCCeeEEEecCCCEEEEEE
Q 003579          259 LQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPRL----LRFRSGHSAPPLCIRFYANGRHILSAG  333 (809)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~d~~i~vw~~~~~~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~  333 (809)
                      ....    .-..+.+...++++.. +.++-....+.+|+++...+.++.    ...+.+-.....+|.++++  .|+++.
T Consensus       432 ~~~~----~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvAD  505 (1774)
T PF11725_consen  432 MSEA----EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVAD  505 (1774)
T ss_pred             cchh----hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEe
Confidence            2221    1245677778888886 555555566799998877544322    2222333336677778766  688889


Q ss_pred             CCCCEEEEEeee
Q 003579          334 QDRAFRLFSVIQ  345 (809)
Q Consensus       334 ~dg~i~~wd~~~  345 (809)
                      .+|.++.=++..
T Consensus       506 seGkLYsa~l~~  517 (1774)
T PF11725_consen  506 SEGKLYSADLPA  517 (1774)
T ss_pred             CCCCEEeccccc
Confidence            999877666543

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.78  E-value=68  Score=39.01  Aligned_cols=303  Identities=12%  Similarity=0.006  Sum_probs=0.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (809)
Q Consensus       179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~  258 (809)
                      +.......++|+|...++|.|+.+|.|+++....-+............+..+-+-.... -..+...+..+.+|......
T Consensus        33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s-~~~~l~~~~~~~~~~~~~~~  111 (993)
T KOG1983|consen   33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGIS-RNLVLSDDDSLHLWSIKIKT  111 (993)
T ss_pred             CCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeeccc-ccceeecccceeeecccccc


Q ss_pred             eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCE
Q 003579          259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  338 (809)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i  338 (809)
                      .+     .+...+.+..--+--.. .-+ ..+.+++|+........-.......+...+....-.-..........+-.+
T Consensus       112 ~~-----~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  184 (993)
T KOG1983|consen  112 GV-----FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVL  184 (993)
T ss_pred             ee-----ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccce


Q ss_pred             EEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeee
Q 003579          339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (809)
Q Consensus       339 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  418 (809)
                      ....                                                                       ... .
T Consensus       185 ~~~~-----------------------------------------------------------------------~~~-~  192 (993)
T KOG1983|consen  185 ISLP-----------------------------------------------------------------------DAY-L  192 (993)
T ss_pred             eecc-----------------------------------------------------------------------ccc-c


Q ss_pred             cCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeE
Q 003579          419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (809)
Q Consensus       419 ~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i  498 (809)
                      ....+...+.+..+.......+.+ ..+.+.+++.........+.        ......     ..++..++++..||.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~~v~~h~Dgs~  258 (993)
T KOG1983|consen  193 GLSLIEYESLQVLYYSPTKILIGF-NRGLVVIKDRASKYVQSAYL--------PNGQLE-----SRDGSHFVSYHTDGSY  258 (993)
T ss_pred             cccccccccceeeeecCCCcceee-eeeeeeehhcccccchhhcc--------cccccC-----ccCCceEEEEEecCCE


Q ss_pred             EEEECCCCceeeeeecCCCeEEEEEe-------------eCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEE
Q 003579          499 KVWDFKGRDLKSRWEVGCSLVKIVYH-------------RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF  565 (809)
Q Consensus       499 ~iwd~~~~~~~~~~~~~~~i~~~~~s-------------~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~f  565 (809)
                      .+||...++.+.............+-             +.+.....+..+...-.+....+-.+..  +-...+.++.+
T Consensus       259 ~fWd~s~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~  336 (993)
T KOG1983|consen  259 AFWDVSSGKLQIARNPVPLVSLVPYGPCKQINRILTELPRSGKPFWICQGGMPRGSYGDRHCVSVEH--DGTQVKLDFTS  336 (993)
T ss_pred             EeeecCCCceeecCccccccccCCCChhhhhcccccccccccCcEEEecCCCccceecccceeEeec--CCceeEEEEEe


Q ss_pred             CCCCCEEEEEeC
Q 003579          566 SEDGKWLLSSGM  577 (809)
Q Consensus       566 spdg~~l~s~s~  577 (809)
                      +--+.+.+++.+
T Consensus       337 ~~~~~~~~~~~~  348 (993)
T KOG1983|consen  337 SVIGLVGVTSED  348 (993)
T ss_pred             cccceeeeeccc

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.33  E-value=36  Score=33.45  Aligned_cols=145  Identities=15%  Similarity=0.167  Sum_probs=77.6

Q ss_pred             eEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC-C--CcEEEEECCCc----eeeeeee-cccccceEEEE
Q 003579          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEKR----RLQSVIR-EAHDNAIISLH  275 (809)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~-d--g~I~iwdl~~~----~~~~~~~-~~h~~~V~~l~  275 (809)
                      .-.+||+.+++... +.....--..+=+|.+||+ +|.+|+. +  ..+++++..+.    ....... ......--+..
T Consensus        47 ~s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~-ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~  124 (243)
T PF07250_consen   47 HSVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGR-LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT  124 (243)
T ss_pred             EEEEEecCCCcEEe-ccCCCCCcccCcCCCCCCC-EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence            34689988876432 3322233445556889998 8888873 3  35888886541    1110000 12333444566


Q ss_pred             EecCCCEEEEEcCCCc-EEEEEeeCCCCCceeEEeccC-----CCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579          276 FFANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSG-----HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (809)
Q Consensus       276 ~~~~~~~l~s~s~d~~-i~vw~~~~~~~~~~~~~~~~~-----h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  349 (809)
                      -.+||+.|+.||.++- ..+|.-.........+..+..     ...---.+...|+|+.++.+..+.  .+||..+.+..
T Consensus       125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~  202 (243)
T PF07250_consen  125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVV  202 (243)
T ss_pred             ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEE
Confidence            6789999999887743 333321111111111111111     011112455578999998887654  56787776554


Q ss_pred             eec
Q 003579          350 REL  352 (809)
Q Consensus       350 ~~~  352 (809)
                      +.+
T Consensus       203 ~~l  205 (243)
T PF07250_consen  203 RTL  205 (243)
T ss_pred             eeC
Confidence            444

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=84.87  E-value=25  Score=30.53  Aligned_cols=108  Identities=12%  Similarity=0.068  Sum_probs=71.0

Q ss_pred             EEcCCCCEEEEEeCcCeEEEEECCC--------CceeeeeecCCCeEEEEEee-----CCCEEEEEeCCCeEEEEEcCCC
Q 003579          481 ACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVYHR-----VNGLLATVADDLVIRLFDVVAL  547 (809)
Q Consensus       481 ~~~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~i~~~~~s~-----~~~~la~~~~d~~I~v~d~~~~  547 (809)
                      .|+.....|+.++.-|+|.|++...        ...+..+.....|++++-.+     +...|+.|+ ...+..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence            4566667788888889999998663        34566777788888887665     244666665 557999999876


Q ss_pred             eEEEEEecCCCCeeeEEECC----CCCEEEEEeCCCeEEEEEcCCccE
Q 003579          548 RMVRKFEGHTDRITDFCFSE----DGKWLLSSGMDGSLRIWDVILARQ  591 (809)
Q Consensus       548 ~~~~~~~~h~~~I~~l~fsp----dg~~l~s~s~D~~I~vwd~~~~~~  591 (809)
                      .-+..-. -.+.|+++.+-.    +..+++ .+.++.|.-||..-.+.
T Consensus        84 ~d~Fyke-~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   84 SDLFYKE-VPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             chhhhhh-CccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEE
Confidence            5433222 235677777632    234444 44577888888664443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.73  E-value=3.6  Score=46.69  Aligned_cols=71  Identities=17%  Similarity=0.238  Sum_probs=44.6

Q ss_pred             eCCCEEEEEeCCCeEEEEEcCC----CeEEEE-Ee----------c-----------CCCCeeeEEECC----CCCEEEE
Q 003579          525 RVNGLLATVADDLVIRLFDVVA----LRMVRK-FE----------G-----------HTDRITDFCFSE----DGKWLLS  574 (809)
Q Consensus       525 ~~~~~la~~~~d~~I~v~d~~~----~~~~~~-~~----------~-----------h~~~I~~l~fsp----dg~~l~s  574 (809)
                      ++...++++..||.+.......    +..... ..          +           ..+.+.+++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3667777888888887777654    212111 11          0           123456667766    7789999


Q ss_pred             EeCCCeEEEEEcCCccEEEEe
Q 003579          575 SGMDGSLRIWDVILARQIDAI  595 (809)
Q Consensus       575 ~s~D~~I~vwd~~~~~~i~~~  595 (809)
                      .+.|+++|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999997655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=84.68  E-value=47  Score=37.69  Aligned_cols=37  Identities=5%  Similarity=0.256  Sum_probs=30.4

Q ss_pred             cceeeeEecCCcceEEEEcCCeEEEEEEcCCeEEEEE
Q 003579            6 PYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYN   42 (809)
Q Consensus         6 p~r~~g~vs~~v~~~~~~~~~~~~i~~~~~~~i~iwd   42 (809)
                      |...+|.|+|++..+.+.-+.+.+++...++.|.+.+
T Consensus       104 ~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~  140 (1243)
T COG5290         104 EMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFD  140 (1243)
T ss_pred             hhhhhccccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence            5567899999999888888888788888888887765

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=84.24  E-value=67  Score=37.92  Aligned_cols=68  Identities=19%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE----e-----------c----CCCCeeeEEECCCCCEEEEE
Q 003579          515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF----E-----------G----HTDRITDFCFSEDGKWLLSS  575 (809)
Q Consensus       515 ~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~----~-----------~----h~~~I~~l~fspdg~~l~s~  575 (809)
                      ...|.++....-+.+++.+..||+|.++|..+.+.+...    .           |    +-..+..++|||.+.-++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            366778888888889999999999999999887655443    1           0    11234458899999999998


Q ss_pred             eCCCeEE
Q 003579          576 GMDGSLR  582 (809)
Q Consensus       576 s~D~~I~  582 (809)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=84.03  E-value=71  Score=36.38  Aligned_cols=92  Identities=11%  Similarity=0.134  Sum_probs=50.4

Q ss_pred             ccEEEEEEcCCCCEEEEEeCcCe-----EEEEECC---CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC
Q 003579          475 GEVVGVACDSTNTLMISAGYHGD-----IKVWDFK---GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (809)
Q Consensus       475 ~~v~~l~~~~~~~~l~s~~~dg~-----i~iwd~~---~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~  546 (809)
                      +.-..+.|-|+|..+++-+.||.     |.++.-+   .|+.-............+|+-....+|++ ....+.+|-..+
T Consensus       247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN  325 (1243)
T COG5290         247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN  325 (1243)
T ss_pred             cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence            33445889999999999886653     6666533   22222222333445566676655555554 356788887655


Q ss_pred             CeEEEEEecCCCCeeeEEECC
Q 003579          547 LRMVRKFEGHTDRITDFCFSE  567 (809)
Q Consensus       547 ~~~~~~~~~h~~~I~~l~fsp  567 (809)
                      -.--....-.-..+.-+.|+|
T Consensus       326 yhWYLK~e~~ip~~s~vkwhp  346 (1243)
T COG5290         326 YHWYLKVERQIPGISYVKWHP  346 (1243)
T ss_pred             eEEEEEEeecCCCcceeeecc
Confidence            332111111222344455655

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=83.05  E-value=63  Score=33.62  Aligned_cols=107  Identities=7%  Similarity=0.004  Sum_probs=54.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCcee---eeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-----cCeEEEE
Q 003579          435 CGNFAVLGTAG-----GWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVW  501 (809)
Q Consensus       435 ~g~~l~~g~~~-----g~i~i~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~i~iw  501 (809)
                      ++...++|+.+     ..+..||+.+..-.   ......+     ..... .+++. -++++.+.|+.     ...+..|
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp-----~~~~~-~~~~~-~~~~iYv~GG~~~~~~~~~v~~y  144 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLP-----FTFEN-GSACY-KDGTLYVGGGNRNGKPSNKSYLF  144 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCC-----cCccC-ceEEE-ECCEEEEEeCcCCCccCceEEEE
Confidence            56667777654     35677777665431   1111100     00011 11222 24666666664     2357888


Q ss_pred             ECCCCceeeee--ecCCCeEEEEEeeCCCEEEEEeCCC----eEEEEEcCCCe
Q 003579          502 DFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDL----VIRLFDVVALR  548 (809)
Q Consensus       502 d~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~d~----~I~v~d~~~~~  548 (809)
                      |..+.+-...-  .........+..-++++.+.|+.++    .+.+||..+.+
T Consensus       145 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       145 NLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             cCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            88766543321  1112222333345677778877653    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=82.81  E-value=61  Score=33.32  Aligned_cols=227  Identities=9%  Similarity=0.017  Sum_probs=112.2

Q ss_pred             eEEEEEEcCCeEEEEEcCc--cEEEEecCCCCCCcEEEEEeCCeE--EEEECCe--EEEEECCeeE--------------
Q 003579           27 ENFVTVSVGKAFHIYNCAK--LNLVLVGPQLPKKIRALASYRDYT--FAAYGNH--IAVVKRAHQV--------------   86 (809)
Q Consensus        27 ~~~i~~~~~~~i~iwd~~~--~~~~~~~~~~~~~I~~la~~~~~~--~~a~g~~--i~vw~~~~~~--------------   86 (809)
                      .+++.++.+|-+.++ ...  ..+....  ...+|++|.+.+...  ++-+|..  +++++.....              
T Consensus        14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       14 KWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             cEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            577888777766555 554  3455554  467899999887733  4445666  9999752111              


Q ss_pred             ---EEEccccccEEEEEE-eCC--EEEEEeCCCcEEEEEcCCCccccceeeeE---E-cCCccccEEEEeCCCCCCEEEE
Q 003579           87 ---ATWSRHSAKVNLLLL-FGE--HILSIDIDGNMFIWAFKGIEENLAPVGHV---K-LDDKFTPTCIMHPDTYLNKVIV  156 (809)
Q Consensus        87 ---~~~~~h~~~V~~l~~-~g~--~l~s~~~dg~i~vWd~~~~~~~~~~~~~~---~-~~~~~~~~~~~~p~~~~~~l~~  156 (809)
                         ....+|......... .++  ..+.+....+|.++............+..   . ........+..++.....+|.+
T Consensus        91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv  170 (302)
T smart00036       91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI  170 (302)
T ss_pred             ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence               112234333333332 233  22334446667776543331111112211   1 1112222333444432367888


Q ss_pred             EeCCCeEEEEeCCC--CceEE-----EEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC-eEEEEEeccCCCcE
Q 003579          157 GSQEGSLQLWNIST--KKKLY-----EFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAV  227 (809)
Q Consensus       157 ~~~dg~i~lwd~~~--~~~~~-----~~~~~~-~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~V  227 (809)
                      |+..+...++++..  ...-.     ...... .++..... +++.+|++ .. ......|.. | +........-.+..
T Consensus       171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~~-~~~v~Vn~~-G~~~~r~~~l~w~~~p  246 (302)
T smart00036      171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-YD-EFGVFVNLY-GKRRSRNPILHWEFMP  246 (302)
T ss_pred             EEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-EC-cEEEEEeCC-CCccccceEEEcCCcc
Confidence            88763355555532  11000     011111 34434343 34444444 33 344555544 3 22221111124566


Q ss_pred             EEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeee
Q 003579          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (809)
Q Consensus       228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~  264 (809)
                      .++++..  . +|..-. +..|.++++.+++.++.+.
T Consensus       247 ~~~~~~~--p-yll~~~-~~~ievr~l~~~~l~q~i~  279 (302)
T smart00036      247 ESFAYHS--P-YLLAFH-DNGIEIRSIKTGELLQELA  279 (302)
T ss_pred             cEEEEEC--C-EEEEEc-CCcEEEEECCCCceEEEEe
Confidence            7888774  3 444444 4569999999999888886

Unpublished observations.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=82.47  E-value=69  Score=33.69  Aligned_cols=41  Identities=5%  Similarity=0.036  Sum_probs=19.8

Q ss_pred             CcEEEEECCCceeeeeeecccc-cceEEEEEecCCCEEEEEcC
Q 003579          247 GVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSASA  288 (809)
Q Consensus       247 g~I~iwdl~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~  288 (809)
                      ..+.+||..+.+-...-..... ..-.+++ .-++++.+.|+.
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~  209 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGE  209 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeee
Confidence            4688899887643322111111 1112222 335667777765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=82.24  E-value=70  Score=33.59  Aligned_cols=238  Identities=9%  Similarity=0.045  Sum_probs=0.0

Q ss_pred             EEEEEeCCEEEEEeCCC-------cEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC-----CeEE
Q 003579           97 NLLLLFGEHILSIDIDG-------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQ  164 (809)
Q Consensus        97 ~~l~~~g~~l~s~~~dg-------~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~  164 (809)
                      ..+...+...+.|+.+.       .+.++|..+.+-...+..............+..-++  +.++.|+.+     ..+.
T Consensus        27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~v~  104 (341)
T PLN02153         27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT--KLYIFGGRDEKREFSDFY  104 (341)
T ss_pred             eEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC--EEEEECCCCCCCccCcEE


Q ss_pred             EEeCCCCceEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCC-----------CeEEEEEeeCCe--EEEEEeccCCCc
Q 003579          165 LWNISTKKKLYEFKG-----WGSSISSCVSSPALDVVAVGCSD-----------GKIHVHNVRYDE--ELVTFTHSMRGA  226 (809)
Q Consensus       165 lwd~~~~~~~~~~~~-----~~~~I~~l~~sp~~~~la~g~~d-----------g~i~iwd~~~~~--~~~~~~~~~~~~  226 (809)
                      +||.++.+=...-.-     ........+..-++++.+.|+.+           ..+.+||.++.+  .+..........
T Consensus       105 ~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r  184 (341)
T PLN02153        105 SYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR  184 (341)
T ss_pred             EEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC


Q ss_pred             EEEEEEecCCCCEEEEEcCC-------------CcEEEEECCCceeeeeeecc--cccceEEEEEecCCCEEEEEcC---
Q 003579          227 VTALAFSSDGQPLLASGASS-------------GVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSASA---  288 (809)
Q Consensus       227 V~~l~fs~dg~~~lasg~~d-------------g~I~iwdl~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~---  288 (809)
                      -......-+++ +.+.|+.+             ..+.+||+.+.+-...-..+  ........+..-++.+++.|+.   
T Consensus       185 ~~~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~  263 (341)
T PLN02153        185 GGAGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWP  263 (341)
T ss_pred             CcceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCC


Q ss_pred             -------CCcE--EEEEeeCCCCCceeEE-----eccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579          289 -------DNSI--KMWIFDTTDGDPRLLR-----FRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (809)
Q Consensus       289 -------d~~i--~vw~~~~~~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  337 (809)
                             .+.+  .+|.++.....+..+.     ..........++....+++.++.|+.++.
T Consensus       264 ~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~  326 (341)
T PLN02153        264 DLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT  326 (341)
T ss_pred             ccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=82.05  E-value=76  Score=33.88  Aligned_cols=240  Identities=10%  Similarity=0.052  Sum_probs=0.0

Q ss_pred             EEEEEeCCCeEEEEeCCC-CceEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCC-----------eEEEEEeeCCeEEEE
Q 003579          153 KVIVGSQEGSLQLWNIST-KKKLYEFKGWG--SSISSCVSSPALDVVAVGCSDG-----------KIHVHNVRYDEELVT  218 (809)
Q Consensus       153 ~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~--~~I~~l~~sp~~~~la~g~~dg-----------~i~iwd~~~~~~~~~  218 (809)
                      +++.|..+..+..+|+.. .+.-..+..-.  .........-++.+.+.|+.+.           .+..||..+.+-...
T Consensus        42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~  121 (376)
T PRK14131         42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL  121 (376)
T ss_pred             EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeC


Q ss_pred             EeccCCCcEEEEEEe-cCCCCEEEEEcCC---------------------------------------CcEEEEECCCce
Q 003579          219 FTHSMRGAVTALAFS-SDGQPLLASGASS---------------------------------------GVISIWNLEKRR  258 (809)
Q Consensus       219 ~~~~~~~~V~~l~fs-~dg~~~lasg~~d---------------------------------------g~I~iwdl~~~~  258 (809)
                      -.......-...+.. -+++ +.+.|+.+                                       ..+.+||..+.+
T Consensus       122 ~~~~p~~~~~~~~~~~~~~~-IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~  200 (376)
T PRK14131        122 DTRSPVGLAGHVAVSLHNGK-AYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQ  200 (376)
T ss_pred             CCCCCCcccceEEEEeeCCE-EEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCe


Q ss_pred             eeeeeecccccceEEEEEecCCCEEEEEc------CCCcEEEEEeeCCCCCceeEEeccC------CCCCCeeEEEecCC
Q 003579          259 LQSVIREAHDNAIISLHFFANEPVLMSAS------ADNSIKMWIFDTTDGDPRLLRFRSG------HSAPPLCIRFYANG  326 (809)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------~d~~i~vw~~~~~~~~~~~~~~~~~------h~~~v~~i~~~~~~  326 (809)
                      -...-..............-++++.+.|+      ....+..++++.....+..+..+..      +.......+...++
T Consensus       201 W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~  280 (376)
T PRK14131        201 WKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNG  280 (376)
T ss_pred             eeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECC


Q ss_pred             CEEEEEECC----------------------CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579          327 RHILSAGQD----------------------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (809)
Q Consensus       327 ~~l~s~~~d----------------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  384 (809)
                      +.++.|+.+                      ..+.+||..+++-...-....                            
T Consensus       281 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~----------------------------  332 (376)
T PRK14131        281 VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ----------------------------  332 (376)
T ss_pred             EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC----------------------------


Q ss_pred             cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC------cEEEEECCCCce
Q 003579          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG------WIERFNLQSGIS  458 (809)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g------~i~i~~~~~~~~  458 (809)
                                                              ......+..-+++.+++|+...      .|..++...+..
T Consensus       333 ----------------------------------------~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~  372 (376)
T PRK14131        333 ----------------------------------------GLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKL  372 (376)
T ss_pred             ----------------------------------------CccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEE


Q ss_pred             eee
Q 003579          459 RGS  461 (809)
Q Consensus       459 ~~~  461 (809)
                      ..+
T Consensus       373 ~~~  375 (376)
T PRK14131        373 TVE  375 (376)
T ss_pred             EEe

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=81.91  E-value=99  Score=35.13  Aligned_cols=111  Identities=20%  Similarity=0.357  Sum_probs=71.6

Q ss_pred             EEeCCCCCCEEEEEeCCCeEEEEeCC-CCceEEEEcC-CCCCEEEEEEcCC---CCEEEEEeCC-CeEEEEEeeCC----
Q 003579          144 IMHPDTYLNKVIVGSQEGSLQLWNIS-TKKKLYEFKG-WGSSISSCVSSPA---LDVVAVGCSD-GKIHVHNVRYD----  213 (809)
Q Consensus       144 ~~~p~~~~~~l~~~~~dg~i~lwd~~-~~~~~~~~~~-~~~~I~~l~~sp~---~~~la~g~~d-g~i~iwd~~~~----  213 (809)
                      .++|+.  +.+-.|=....|.-|=++ |.++++.+.- ....|.||.....   ..+.++|-.+ +.-++-.+..+    
T Consensus        34 ~~s~~s--n~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~  111 (670)
T PF10395_consen   34 DFSPDS--NQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST  111 (670)
T ss_pred             ccCCCC--ceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence            366777  777777665566555443 7888888763 3567788876543   2366666444 33455544433    


Q ss_pred             -------eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc
Q 003579          214 -------EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (809)
Q Consensus       214 -------~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~  257 (809)
                             +...++...-.+.|..+.|.++++ .+++...+|.|.+||...+
T Consensus       112 ~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~-~I~vvl~nG~i~~~d~~~~  161 (670)
T PF10395_consen  112 EDGTVNSETTNEFELKLDDKVVGIKFSSDGK-IIYVVLENGSIQIYDFSEN  161 (670)
T ss_pred             cccccCccccceEEEEcccceEEEEEecCCC-EEEEEEcCCcEEEEecccc
Confidence                   222222222367899999999988 7777888999999999443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=81.26  E-value=69  Score=32.92  Aligned_cols=102  Identities=10%  Similarity=0.065  Sum_probs=58.1

Q ss_pred             CCEEEEEeCCCeEEEEEeeC--CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee-----------
Q 003579          193 LDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-----------  259 (809)
Q Consensus       193 ~~~la~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~-----------  259 (809)
                      +++|+.|+.+|...+. +..  ++..+.+.   ..+|+++...+.-+-+++.++....++.+++..-..           
T Consensus        13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~~---~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~   88 (302)
T smart00036       13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLIG---RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV   88 (302)
T ss_pred             CcEEEEEeCCceEEEE-cccCCCCeEEecC---cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence            3689999999965554 543  22333332   568999999988774444555555699999843221           


Q ss_pred             ---eeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEee
Q 003579          260 ---QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFD  298 (809)
Q Consensus       260 ---~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~  298 (809)
                         ......+|..+........+.. .++++....+|.++.+.
T Consensus        89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~  131 (302)
T smart00036       89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWY  131 (302)
T ss_pred             ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEcc
Confidence               0011224555444444443332 33444455677776443

Unpublished observations.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=81.22  E-value=67  Score=32.71  Aligned_cols=187  Identities=11%  Similarity=0.114  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-----CEE
Q 003579          427 VKACTISACGNFAVLGTA------------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-----TLM  489 (809)
Q Consensus       427 v~~v~~s~~g~~l~~g~~------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~l  489 (809)
                      |..+.+.+||+.-++=+.            .-.|..||+.+++....+.-.....  ...+.+..+.++...     .++
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~--~~~s~lndl~VD~~~~~~~~~~a   80 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIA--PPDSFLNDLVVDVRDGNCDDGFA   80 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHc--ccccccceEEEEccCCCCcceEE
Confidence            455566666665544211            1268899999999887776322211  245678889888732     233


Q ss_pred             EEE-eCcCeEEEEECCCCceeeeeec--------------------CCCeEEEEEee---CCCEEEEEeCCC-eEEEEEc
Q 003579          490 ISA-GYHGDIKVWDFKGRDLKSRWEV--------------------GCSLVKIVYHR---VNGLLATVADDL-VIRLFDV  544 (809)
Q Consensus       490 ~s~-~~dg~i~iwd~~~~~~~~~~~~--------------------~~~i~~~~~s~---~~~~la~~~~d~-~I~v~d~  544 (809)
                      ..+ ...+-|.++|+.+++..+....                    ...+..++.+|   +++.|....-.+ .++-...
T Consensus        81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T  160 (287)
T PF03022_consen   81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPT  160 (287)
T ss_dssp             EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEH
T ss_pred             EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEH
Confidence            333 3446899999998865544422                    23355555555   455555544322 2222221


Q ss_pred             C---CC---------eEEEEEecCC-CCeeeEEECCCCCEEEEEeCCCeEEEEEcCCc---cEEEEee-eCc---ceEEE
Q 003579          545 V---AL---------RMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILA---RQIDAIH-VDV---SITAL  604 (809)
Q Consensus       545 ~---~~---------~~~~~~~~h~-~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~---~~i~~~~-~~~---~v~~l  604 (809)
                      .   ..         +.+..+ |.. .....++++++|...++--..+.|..|+..+.   +.+..+. -+.   -+.++
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~  239 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL  239 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred             HHhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecccee
Confidence            1   00         112222 222 45677899999998888889999999998751   1222222 222   27888


Q ss_pred             EEcC--CCCeEEEE
Q 003579          605 SLSP--NMDVLATA  616 (809)
Q Consensus       605 ~~sp--dg~~lat~  616 (809)
                      ++.+  +|.+.+.+
T Consensus       240 ~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  240 KIDPEGDGYLWVLS  253 (287)
T ss_dssp             EE-T--TS-EEEEE
T ss_pred             eeccccCceEEEEE
Confidence            8887  55544443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	809
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-10
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-10
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-10
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-10
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-04
2h9l_A	329	Wdr5delta23 Length = 329		6e-10
2h9l_A	329	Wdr5delta23 Length = 329		1e-08
2h9l_A	329	Wdr5delta23 Length = 329		6e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		4e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		9e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		6e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		6e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		6e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		7e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		9e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		3e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		3e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		3e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		3e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		4e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-04

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V    +S  GNFAV  +    +  +NLQ+G  +  +L         H  +V+ VA    N
Sbjct: 70  VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL--------GHTKDVLSVAFSPDN 121
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
             ++S G    ++VW+ KG       R   + W    S V+        ++ +   D ++
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW---VSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
           +++D+   R+V   +GHT+ +T    S DG    SS  DG  R+WD+     +  +    
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 600 SITALSLSPN 609
            I  +  SPN
Sbjct: 239 PINQICFSPN 248

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 34/293 (11%)
Query: 63  ASYRDYTFAAYGNHIAVVKRAHQVATWSR----------HSAKVNLLLLF--GEHILSID 110
           +S R   F+  G  IA       V  W+R          HS+ VN +     G+ I S  
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 111 IDGNMFIWAFKG-IEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169
            D  + +W   G + + L   GH              PD     +   S + +++LWN  
Sbjct: 282 DDKTVKLWNRNGQLLQTL--TGH----SSSVWGVAFSPDGQT--IASASDDKTVKLWN-R 332
Query: 170 TKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVT 228
             + L    G           P    +A    D  + + N R  + L T T HS   +V 
Sbjct: 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS--SVR 389
Query: 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288
            +AFS DGQ  +AS +    + +WN   + LQ++    H +++  + F  ++  + SAS 
Sbjct: 390 GVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDDQTIASASD 446
Query: 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
           D ++K+W     + + +LL+  +GHS+    + F  +G+ I SA  D+  +L+
Sbjct: 447 DKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 13/189 (6%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
           +   S + +++LWN    + L    G           P    +A    D  + + N R  
Sbjct: 72  IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 129
Query: 214 EELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII 272
           + L T T HS   +V  +AFS DGQ  +AS +    + +WN   + LQ++    H +++ 
Sbjct: 130 QLLQTLTGHSS--SVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVW 184
Query: 273 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332
            + F  +   + SAS D ++K+W     + + +LL+  +GHS+    + F  +G+ I SA
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 333 GQDRAFRLF 341
             D+  +L+
Sbjct: 240 SDDKTVKLW 248

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 460 GSYLDMSERSNY-AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518
           GS++ + ER+   AH+  V GVA       + SA     +K+W+  G+ L++      S+
Sbjct: 1   GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 60
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
             + +      +A+ +DD  ++L++    ++++   GH+  +    FS DG+ + S+  D
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 579 GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
            ++++W+              S+  ++ SP+   +A+A  D+  V LW NR
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW-NR 168

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 44  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 103
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 104 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 163
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 164 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 221 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 134 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 188
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 242
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 243 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 270

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 11  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 63
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 64  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 101
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 102 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 153
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 212
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 213 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 271 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 308

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 6   KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 65
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 66  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 123
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 124 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 157

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 74  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 138 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 192
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 246
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 247 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 274

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 68  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 105
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 138 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 192
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 246
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 247 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 274

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 68  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 105
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 137 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 191
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 245
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 246 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 273

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 14  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 66
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 67  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 104
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 105 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 156
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 215
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 216 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 274 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 311

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 9   KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 68
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 69  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 126
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 127 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 160

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 139 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 193
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 247
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 248 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 275

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 16  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 68
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 69  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 106
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 107 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 158
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 217
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 218 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 276 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 313

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 11  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 70
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 71  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 128
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 129 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 162

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 155 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 209
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 263
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 264 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 291

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 32  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 84
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 85  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 122
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 123 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 174
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 233
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 234 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 292 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 329

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 27  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 86
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 87  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 144
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 145 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 178

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 143 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 197
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 251
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 252 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 279

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 20  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 72
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 73  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 110
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 111 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 162
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 221
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 222 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 280 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 317

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 15  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 74
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 75  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 132
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 133 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 166

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 74  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 74  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 160 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 214
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 268
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 269 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 296

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 73  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 241

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 162 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 216
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 270
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 271 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 298

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 75  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 243

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
               L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGMCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNMVYIWNL----QTKEIVQK 277

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 55/339 (16%)
Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+   +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 71  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G        M  ++  AH+  V  V  
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 219
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 220 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 278 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 578 DGSLRIWDV 586
           D S+RIWDV
Sbjct: 131 DESVRIWDV 139

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+   +S+ G FA+ G+  G +  ++L +G+S         R    H  +V+ VA    N
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------RRFVGHTKDVLSVAFSLDN 484
Query: 487 TLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIR 540
             ++SA     IK+W+  G    +  E G       S V+   + +   + + + D  ++
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           ++++   ++     GHT  ++    S DG    S G DG + +WD+   +++ ++  +  
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Query: 601 ITALSLSPNMDVLATAHVDQNGVYLW 626
           I AL  SPN   L  A   ++G+ +W
Sbjct: 605 IHALCFSPNRYWLCAAT--EHGIKIW 628

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 107/212 (50%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
               L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGMCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN +K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNMVYIWNL----QTKEIVQK 277

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/340 (19%), Positives = 138/340 (40%), Gaps = 57/340 (16%)
Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+   +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 71  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G        M  ++  AH+  V  V  
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG---LLATVADDLV 538
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG   L AT+ +DL 
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL- 219
Query: 539 IRLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQID 593
            +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     + 
Sbjct: 220 -KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Query: 594 AI--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
            +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 277 KLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 578 DGSLRIWDV 586
           D S+RIWDV
Sbjct: 131 DESVRIWDV 139

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLL 530
            H   V  V      ++M+SA     IKVWD++  D +   +     V+ I +     LL
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
           A+ + D+ I+L+D      +R   GH   ++      +G  ++S+  D ++++W+V    
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 591 QIDAIHVDVSITALSLSPNMD--VLATAHVDQNGVYLWV 627
            +           + + PN D  ++A+   DQ  V +WV
Sbjct: 226 CVKTFTGHREWVRM-VRPNQDGTLIASCSNDQT-VRVWV 262

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%)
Query: 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS--- 517
           S LD   R NY  + +++   C      +I  G    + +WD      + + E+  S   
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGC-----TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
              +     + +  +   D  I ++D+    +VR+F+GHTD  +    S DG  L + G+
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
           D ++R WD+   RQ+        I +L   P  + LA      N   L VN+
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 62  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 113
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 114 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 171 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 231 QDEVFSLAFSPNRYWLAAA 249

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V    IS+ G FA+ G+  G +  ++L +G         + R    H  +V+ VA  S N
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDN 117
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
             ++S      IK+W+  G        +  S W    S V+   +  N ++ +   D ++
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
           +++++   ++     GHT  +     S DG    S G DG   +WD+   + +  +    
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234
Query: 600 SITALSLSPNMDVLATA 616
            I AL  SPN   L  A
Sbjct: 235 IINALCFSPNRYWLCAA 251

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V    IS+ G FA+ G+  G +  ++L +G +         R    H  +V+ VA  S N
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTT--------TRRFVGHTKDVLSVAFSSDN 140
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
             ++S      IK+W+  G        +  S W    S V+   +  N ++ +   D ++
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
           +++++   ++     GHT  +     S DG    S G DG   +WD+   + +  +    
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257
Query: 600 SITALSLSPNMDVLATA 616
            I AL  SPN   L  A
Sbjct: 258 IINALCFSPNRYWLCAA 274

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V  V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVXSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           + +IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SXIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
            ++ +++   ++   F GH   I     S DG  + S+G DG + +W++   +    +  
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 467  ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 521
            ER    H G V+  A  S  T   S       K+W F   DL S     +   GC  V+ 
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1132
Query: 522  VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 571
                ++G LLAT  D+  IR+++V   +++         EG   H   +TD CFS D K 
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 572  LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 623
            L+S+G  G L+ W+V         + +  ++  + +SP+     T  VD  G+
Sbjct: 1193 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1241

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 467  ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 521
            ER    H G V+  A  S  T   S       K+W F   DL S     +   GC  V+ 
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1139
Query: 522  VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 571
                ++G LLAT  D+  IR+++V   +++         EG   H   +TD CFS D K 
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 572  LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 623
            L+S+G  G L+ W+V         + +  ++  + +SP+     T  VD  G+
Sbjct: 1200 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1248

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
           + ++ FS DG+  LA+GA   +I IW++E R++  +I + H+  I SL +F +   L+S 
Sbjct: 126 IRSVCFSPDGK-FLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR--------FYANGRHILSAGQDRAF 338
           S D ++++W              R+G  +  L I            +G++I +   DRA 
Sbjct: 184 SGDRTVRIW------------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 339 RLF 341
           R++
Sbjct: 232 RVW 234

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
            LAT A+D +IR++D+   ++V   +GH   I    +   G  L+S   D ++RIWD+  
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 589 ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 632
            +    + ++  +T +++SP       A      V +W +   F
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  +H+   NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  +H+   NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 14/208 (6%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  SQ+G L +WN  T +K +  K            P    VA G  D    + N+ 
Sbjct: 79  NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138
Query: 212 YDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR- 264
              +      +       +G  ++  +  D +  L +G+      +W++   +  S+   
Sbjct: 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198
Query: 265 ---EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
                H   ++SL   + N  + +S S D ++++W    T    R +R   GH      +
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHEGDINSV 255
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +F+ +G+   +   D   RLF +    Q
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 23/161 (14%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVY 523
            H  EV  VA    N  ++SAG   +IK+W+  G        ++  S W V C     + 
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW-VSCVRYSPIM 174
Query: 524 HRVNGL------LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
              N +       A+V  D  +++++    ++   F+ H   +     S +GK++ + G 
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233
Query: 578 DGSLRIWDVI----LARQIDAIHVDVSITALSLSPNMDVLA 614
           D  L IWD++      R+ DA     +I  ++ +P +  +A
Sbjct: 234 DKKLLIWDILNLTYPQREFDA---GSTINQIAFNPKLQWVA 271

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283
             V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337
Query: 284 MSASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
            S+  D  + +W            D  DG P LL    GH+A
Sbjct: 338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283
             V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 339
Query: 284 MSASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
            S+  D  + +W            D  DG P LL    GH+A
Sbjct: 340 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302
           G + G I + +     LQ  I +AH + I  L FF +   L+S+S D  +K+W     DG
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 168
Query: 303 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
            +PR L    GH A    I     GR++LSA  D   RL
Sbjct: 169 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 204

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302
           G + G I + +     LQ  I +AH + I  L FF +   L+S+S D  +K+W     DG
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 171
Query: 303 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
            +PR L    GH A    I     GR++LSA  D   RL
Sbjct: 172 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 207

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574
           G  ++ I Y      LA+ A D +I +FD+   +++   EGH   I    FS D + L++
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 575 SGMDGSLRIWDV 586
           +  DG ++I+DV
Sbjct: 224 ASDDGYIKIYDV 235

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497
           FA  G   G I  +N   G   G + D S + N AH+G V G+      T + SA     
Sbjct: 205 FASTG-GDGTIVLYNGVDGTKTGVFEDDSLK-NVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 498 IKVWDFKGRDLKSRWEVGCSL----VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF 553
           IK+W+     ++    VG  +    + I++ +    L +++ +  I   +     + +  
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNPELGSIDQVR 320
Query: 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
            GH   IT    S DGK L S+  +G +  WD+
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDI 353

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 81  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 139 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 80  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 80  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 76  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 134 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 175 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 19/203 (9%)
Query: 143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSD 202
           C+ + D    K++ G ++ ++++W+ +T +      G               V+  G SD
Sbjct: 138 CLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSD 192
Query: 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262
             + V +V   E L T  H    AV  L F++    ++ + +    I++W++      ++
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCE-AVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITL 248
Query: 263 IRE--AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
            R    H  A+  + F  ++  ++SAS D +IK+W   T +     +R  +GH     C+
Sbjct: 249 RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE----FVRTLNGHKRGIACL 302
Query: 321 RFYANGRHILSAGQDRAFRLFSV 343
           ++    R ++S   D   RL+ +
Sbjct: 303 QY--RDRLVVSGSSDNTIRLWDI 323

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	809
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-19
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-15
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.004
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-05

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.5 bits (241), Expect = 2e-22
 Identities = 37/303 (12%), Positives = 88/303 (29%), Gaps = 30/303 (9%)

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364
           R  R   GH A    + +  + R ++SA QD    ++      +   +  R         
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP--- 421
                 +    +         +    NV                 F+    I+       
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 422 ----------------ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 465
                            +   V + +++      V G      + ++++ G+ R ++   
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--- 222

Query: 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV---WDFKGRDLKSRWEVGCSLVKIV 522
                  H  ++  +          +       ++      +     S   + C +  + 
Sbjct: 223 -----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 582
           + +   LL    DD    ++D +         GH +R++    ++DG  + +   D  L+
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 583 IWD 585
           IW+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.2 bits (222), Expect = 5e-20
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 3/156 (1%)

Query: 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC 200
               +         + G+ + S +LW++        F G  S I++    P  +  A G 
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245

Query: 201 SDGKIHV-HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259
            D    +       E +     ++   +T+++FS  G+ LL +G      ++W+  K   
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADR 304

Query: 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
             V+   HDN +  L    +   + + S D+ +K+W
Sbjct: 305 AGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 12/155 (7%)

Query: 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161
                +S   D +  +W  +         GH    +         P+   N    GS + 
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGH----ESDINAICFFPNG--NAFATGSDDA 248

Query: 162 SLQL--WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTF 219
           + +L       +   Y        I+S   S +  ++  G  D   +V +    +     
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 220 T-HSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
             H     V+ L  + DG   +A+G+    + IWN
Sbjct: 309 AGHD--NRVSCLGVTDDGM-AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (127), Expect = 5e-08
 Identities = 34/331 (10%), Positives = 85/331 (25%), Gaps = 36/331 (10%)

Query: 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231
           +     +G  + I +        ++     DGK+ + +     ++          V   A
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCA 104

Query: 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291
           ++  G  +   G  +         +     V RE   +          +   +  S+ ++
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351
                        +     +GH+   + +    + R  +S   D + +L+ V +    + 
Sbjct: 165 TCALWDIE---TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

Query: 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411
            +       A               I F        +     T   D             
Sbjct: 222 FTGHESDINA---------------ICFF------PNGNAFATGSDDAT---CRLFDLRA 257

Query: 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471
             E +          + + + S  G   + G        ++       G           
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------A 309

Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502
            H+  V  +        + +  +   +K+W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALS 605
           +R  R   GH  +I    +  D + L+S+  DG L IWD     ++ AI +    +   +
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 606 LSPNMDVLATAHVDQNGVYLWVNRCMFS 633
            +P+ + +A   +D       +     +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGN 132

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.6 bits (236), Expect = 4e-22
 Identities = 40/312 (12%), Positives = 97/312 (31%), Gaps = 29/312 (9%)

Query: 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362
            P      SGH +P   + F+     ++SA +D   +++        R L     + +  
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN------------- 409
                 + L              +   C       D   + V  + N             
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 410 ---FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG------ 460
               V   + ++    +   V+    +  G      +    +  + + +   +       
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185

Query: 461 ------SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514
                 S+   S  S+ +                ++S      IK+WD            
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 515 GCSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 573
             + V+ +++H     + + ADD  +R++D    R ++    H   +T   F +   +++
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

Query: 574 SSGMDGSLRIWD 585
           +  +D ++++W+
Sbjct: 306 TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.1 bits (201), Expect = 2e-17
 Identities = 36/281 (12%), Positives = 94/281 (33%), Gaps = 29/281 (10%)

Query: 80  VKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF 139
            +      T   H+  V  +       L      +M I  +              +    
Sbjct: 46  YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHD 101

Query: 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG 199
                +      + ++  S++ ++++W + T   +  F G    +     +    ++A  
Sbjct: 102 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

Query: 200 CSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ-------------------PLL 240
            +D  + V  V   E         R  V  ++++ +                     P L
Sbjct: 162 SNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 220

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
            SG+    I +W++        +   HDN +  + F +    ++S + D ++++W  D  
Sbjct: 221 LSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVW--DYK 277

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
           +   R ++  + H      + F+    ++++   D+  +++
Sbjct: 278 NK--RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 6/133 (4%)

Query: 75  NHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVK 134
             I+    +   +      ++       G  +LS   D  + +W        +  VGH  
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-- 246

Query: 135 LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD 194
             D +    + H       ++  + + +L++W+   K+ +         ++S        
Sbjct: 247 --DNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302

Query: 195 VVAVGCSDGKIHV 207
            V  G  D  + V
Sbjct: 303 YVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 548 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
                  GH   +T   F      ++S+  D ++++WD 
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 43/158 (27%)

Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY-------- 523
            H   V  V      ++M+SA     IKVWD++  D +   +     V+ +         
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 524 -----------------------------------HRVNGLLATVADDLVIRLFDVVALR 548
                                                    + + + D  I++++V    
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
            V+ F GH + +     ++DG  + S   D ++R+W V
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.3 bits (230), Expect = 8e-21
 Identities = 45/394 (11%), Positives = 105/394 (26%), Gaps = 64/394 (16%)

Query: 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPVLMS 285
            L   S   P      ++    ++N    R   V       H + +  + F  +   L +
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79

Query: 286 ASADNSIKMWIFDT--------------TDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
              + + +++                   D +                + F  +G+ + +
Sbjct: 80  GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
             +DR  R++ +   +    L        +       +    K V       +R  D   
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----KLVSGSGDRTVRIWDLRT 194

Query: 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
                  + +  V  +                            G +   G+    +  +
Sbjct: 195 GQCSLTLSIEDGVTTVAVS----------------------PGDGKYIAAGSLDRAVRVW 232

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
           + ++G      LD    S   H   V  V        ++S      +K+W+ +  + KS 
Sbjct: 233 DSETGFLVER-LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291

Query: 512 WEVGCSLVKIVYHRVNG-------------LLATVADDLVIRLFDVVALRMVRKFEGHTD 558
            +   S    V +  +               + + + D  +  +D  +   +   +GH +
Sbjct: 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351

Query: 559 RITDFC------FSEDGKWLLSSGMDGSLRIWDV 586
            +             +     +   D   RIW  
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 1e-09
 Identities = 47/399 (11%), Positives = 104/399 (26%), Gaps = 63/399 (15%)

Query: 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK----LYEFKGWGSSISSCVSSPALDV 195
            P  +      +   +         L+N +  ++    L++     S +     S   + 
Sbjct: 17  PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY 76

Query: 196 VAVGCSDGKIHVHNVRYDEELVTFT-----------------HSMRGAVTALAFSSDGQP 238
           +A GC +    V+ V     +   +                  S    + ++ FS DG+ 
Sbjct: 77  LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 134

Query: 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
                A+     +  +     + ++     +                 S      + I+D
Sbjct: 135 ---FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358
              G        S             +G++I +   DRA R++          L   + +
Sbjct: 192 LRTGQCS--LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249

Query: 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD-------TAQAYVWRLQNFV 411
               K            V +        RD  +VV+  +D          A         
Sbjct: 250 GTGHK----------DSVYSVVFT----RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471
                      +   V +   +    + + G+    +  ++ +SG               
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML--------Q 347

Query: 472 AHNGEVVGVAC------DSTNTLMISAGYHGDIKVWDFK 504
            H   V+ VA            +  +       ++W +K
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 9e-09
 Identities = 40/380 (10%), Positives = 96/380 (25%), Gaps = 68/380 (17%)

Query: 263 IREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319
            R  H   I       +    P  +    ++   ++           L     H++   C
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379
           ++F  +G ++ + G ++  +++ V        LS    A +  +             I  
Sbjct: 68  VKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI-- 124

Query: 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 439
                                + +    +  V+          +     +      G   
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG--- 181

Query: 440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499
                         ++             +    +G             + +      ++
Sbjct: 182 -----------SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR 559
           VWD +   L  R +                                         GH D 
Sbjct: 231 VWDSETGFLVERLDS----------------------------------ENESGTGHKDS 256

Query: 560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-------------ITALSL 606
           +    F+ DG+ ++S  +D S+++W++  A          S             + +++ 
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 607 SPNMDVLATAHVDQNGVYLW 626
           + N + + +   D  GV  W
Sbjct: 317 TQNDEYILSGSKD-RGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 6e-08
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 20/132 (15%)

Query: 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG------------WGSSISSCVS 189
           + +   D     V+ GS + S++LWN+       + K                 + S  +
Sbjct: 259 SVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 190 SPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ-----PLLASGA 244
           +   + +  G  D  +   + +    L+      R +V ++A ++         + A+G+
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 245 SSGVISIWNLEK 256
                 IW  +K
Sbjct: 376 GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 84  HQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTP 141
            +  + + H   V  ++    G+ ++S  +D ++ +W  +                + T 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 142 TCIMHPDTYL------NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVS------ 189
                    +        ++ GS++  +  W+  +   L   +G  +S+ S         
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 190 SPALDVVAVGCSDGKIHVHNVR 211
            P  +V A G  D K  +   +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 32/258 (12%), Positives = 85/258 (32%), Gaps = 18/258 (6%)

Query: 426 AVKACTISACGNFAVLGTAGG----WIERFNLQSGISRGSYLDMSER-----SNYAHNGE 476
            V     S  G +   G         +   +L + +S  S  +         S+ + +  
Sbjct: 64  VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536
           +  V        + +      I++WD + R +    +     +  + +  +G        
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 537 LV-IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 595
              +R++D+   +            T      DGK++ +  +D ++R+WD      ++ +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243

Query: 596 HVDV--------SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEI 647
             +         S+ ++  + +   + +  +D++     +       DS   +  + +  
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 648 VSVKMPSVSSVEGCQDEN 665
                  V SV   Q++ 
Sbjct: 304 YIGHKDFVLSVATTQNDE 321

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.5 bits (225), Expect = 3e-20
 Identities = 40/373 (10%), Positives = 103/373 (27%), Gaps = 21/373 (5%)

Query: 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFF 277
           +   +   ++  A++ D    +A   ++  + I+     +   V   + H+  +  + + 
Sbjct: 2   YHSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337
            +   +++   D +  +W         +        +    C+R+  N +        R 
Sbjct: 61  PDSNRIVTCGTDRNAYVW--TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118

Query: 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397
             +    Q+             R+  L +      +         + R            
Sbjct: 119 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178

Query: 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457
                +  ++    L       C      V     SA G+     +    +   +    +
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSC----GWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234

Query: 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 517
           +  +    +                  T + +++AG+     ++ +     K  +     
Sbjct: 235 AVATLASETLPLLA---------VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLD 285

Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW----LL 573
           + K    R         +       +  A         H + ++       GK       
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345

Query: 574 SSGMDGSLRIWDV 586
           ++GMDG + IWDV
Sbjct: 346 TTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.3 bits (196), Expect = 1e-16
 Identities = 37/363 (10%), Positives = 95/363 (26%), Gaps = 19/363 (5%)

Query: 269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328
             I    +  +   +     ++ + ++  + +      +     H+     + +  +   
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388
           I++ G DR   ++++        L    + + AR ++    E K           I   +
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 448
             N         +     + +     + +               S      +       +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLL----------AAGSCDFKCRIFSAYIKEV 175

Query: 449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL 508
           E     +              + +  G V GV   +  + +    +   + + D   +  
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 509 KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568
            +        +  V       L     D    LF   +      F G  D          
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295

Query: 569 GKWLLSSGMDGSLRIWD-VILARQIDAIHVDVSITALSLSP----NMDVLATAHVDQNGV 623
                   +D              +D++H + S++ +S+            T  +D  G+
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCSQFCTTGMD-GGM 353

Query: 624 YLW 626
            +W
Sbjct: 354 SIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.2 bits (136), Expect = 4e-09
 Identities = 46/362 (12%), Positives = 103/362 (28%), Gaps = 31/362 (8%)

Query: 152 NKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209
            ++ +      + ++  S  K  +++E K     ++    +P  + +    +D   +V  
Sbjct: 20  TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79

Query: 210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---LQSVIREA 266
           ++      T               +  +   A G+ S VISI   E+     +   I++ 
Sbjct: 80  LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP 139

Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326
             + ++SL +  N  +L + S D   +++     + + R          P      +   
Sbjct: 140 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER------PAPTPWGSKMPFGEL 193

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
               S+       +       +   +S       A     K     L        A    
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD-ADKKMAVATLASETLPLLAVTFI 252

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
            +   V   H      + +       G+       + P       ++A   F        
Sbjct: 253 TESSLVAAGHDCFPVLFTYDSAA---GKLSFGGRLDVPKQSSQRGLTARERFQ------- 302

Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC----DSTNTLMISAGYHGDIKVWD 502
                NL    S           +  H   V  ++      +  +   + G  G + +WD
Sbjct: 303 -----NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

Query: 503 FK 504
            +
Sbjct: 358 VR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 11/81 (13%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMD 611
             + I+   +++D   +     +  + I++     +   +H     +  +T +  +P+ +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 612 VLATAHVDQNGVYLWVNRCMF 632
            + T   D+N  Y+W  +   
Sbjct: 65  RIVTCGTDRN-AYVWTLKGRT 84

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 15/174 (8%), Positives = 43/174 (24%), Gaps = 9/174 (5%)

Query: 132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP 191
             +          +      ++V   S + ++ L +   K  +         + +     
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253

Query: 192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251
              +VA G  D    +         ++F   +     +       +    +         
Sbjct: 254 ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312

Query: 252 WNLEKRRLQSVIREAHDNAIISLHFFANEP----VLMSASADNSIKMWIFDTTD 301
                  L S     H N++  +   +          +   D  + +W   + +
Sbjct: 313 SAAAGAGLDS----LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (212), Expect = 9e-19
 Identities = 28/359 (7%), Positives = 91/359 (25%), Gaps = 38/359 (10%)

Query: 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289
              ++DGQ          +I       R  + +    H   + ++        + +    
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPG--IPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K 71

Query: 290 NSIKMW-IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
             +K+W I    +  P                +   +G  ++  G+     ++ +     
Sbjct: 72  GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131

Query: 349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408
             +                              A        +  +    +  +      
Sbjct: 132 RIKAELTS------------------------SAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 468
             +  + ++R    +        IS  G     G     +  ++           +  + 
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD---------LREGRQL 218

Query: 469 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG 528
             +    ++  +    T   +       +++V      D          ++ + +     
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278

Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587
              +   D ++  +       + +    +  +     S D K++++   D    +++VI
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 3e-11
 Identities = 45/355 (12%), Positives = 91/355 (25%), Gaps = 36/355 (10%)

Query: 273 SLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
           S H  A+ +   +    D  I   I                H      +      RH+ +
Sbjct: 14  SFHVTADGQMQPVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTISNPTRHVYT 68

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
            G     +++ +        +SQ     R                           ++  
Sbjct: 69  GG-KGCVKVWDISHPGNKSPVSQLDCLNR--------------------------DNYIR 101

Query: 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
                 D     +   +   L    L        A    +  AC   A+   +       
Sbjct: 102 SCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
           +  +      +     R    H      +   +  T + + G    ++ WD +      +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220

Query: 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571
            +    +  + Y    G    V  +        V      +   H   +    F+  GKW
Sbjct: 221 HDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279

Query: 572 LLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
            +S+G D  L  W       I       S+ +  +S +   + T   D+    ++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 7/239 (2%)

Query: 59  IRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIW 118
           IR+     D      G   + +      A   R  A++         +         F  
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159

Query: 119 AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS--LQLWNISTKKKLYE 176
              G            +      T         N        G           + +  +
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236
              + S I S    P  + +AVG     + V +V   ++     H     V +L F+  G
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC--VLSLKFAYCG 277

Query: 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
           +    S     +++ W         + +    ++++S     ++  +++ S D    ++
Sbjct: 278 K-WFVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV 196
           +    +            +   ++  L  W       +++ K   SS+ SC  S     +
Sbjct: 265 ESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISVDDKYI 321

Query: 197 AVGCSDGKIHVHNVRY 212
             G  D K  V+ V Y
Sbjct: 322 VTGSGDKKATVYEVIY 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.1 bits (211), Expect = 1e-18
 Identities = 43/354 (12%), Positives = 95/354 (26%), Gaps = 49/354 (13%)

Query: 263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322
           I +A  + I  +    ++ +L+  S D S+ ++ FD    +  LL+    +  P LC  F
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNF 64

Query: 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382
             N    +  G  +   L   +    S +    +                        C 
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN------------------EANLGICR 106

Query: 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442
             +  D   +        +    R     +               K  T+    +  ++G
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166

Query: 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502
                ++ F L         ++     +                     +   G + V  
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEE----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

Query: 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562
           F  +          +                              R+  K       +  
Sbjct: 223 FDDQGDDYNSSKRFAFRCH--------------------------RLNLKDTNLAYPVNS 256

Query: 563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATA 616
             FS   K+L ++G DG +  W++   ++I         + + ++ + ++L  A
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 8e-09
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ----IDAIHVDVSIT 602
           +++V+  +   D I+D         LL +  DGSL ++   +  +    + ++     + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 603 ALSLSPNMDVLATAHVDQNGVYLWVNRCMF 632
             +   N D+       Q  +         
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 40/331 (12%), Positives = 92/331 (27%), Gaps = 20/331 (6%)

Query: 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLL 240
            IS     P+  ++ +   DG + V+      + V    S+  +  +    F  +    +
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
             G   G I   +L        +     N  I       +  L++AS D  I++      
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 301 DGDPRLLRFRSGH--SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358
                 ++  + +             N   ++    +   + F +   +          +
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN--GTIEES 190

Query: 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418
               +++      K +   A    + R              +        + +  +    
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250

Query: 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478
             P N     +   S    F     + G I  +NLQ+           +  N+A   E  
Sbjct: 251 AYPVN-----SIEFSPRHKFLYTAGSDGIISCWNLQTR---------KKIKNFAKFNEDS 296

Query: 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLK 509
            V    ++ ++  A      K      + ++
Sbjct: 297 VVKIACSDNILCLATSDDTFKTNAAIDQTIE 327

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 30/336 (8%), Positives = 78/336 (23%), Gaps = 22/336 (6%)

Query: 146 HPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK---GWGSSISSCVSSPALDVVAVGCSD 202
            P    + +++ S +GSL ++    + K  +      +   +  C      D+     + 
Sbjct: 20  IPSK--SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77

Query: 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262
               +              +    +        G   L + +  G+I + +        +
Sbjct: 78  QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137

Query: 263 IREAHDNAIISLHFFANEPVLMS-----ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317
             +  ++    +          S        ++ ++ +     + D   +          
Sbjct: 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197

Query: 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377
                         +  D    +            S+R   +  R              I
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437
            F            + T   D      W LQ        ++   +         I+   N
Sbjct: 258 EFSP------RHKFLYTAGSD-GIISCWNLQTR----KKIKNFAKFNEDS-VVKIACSDN 305

Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L T+    +           +   +    +Y +
Sbjct: 306 ILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYEN 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 10/117 (8%)

Query: 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKV-------- 154
            E      IDG + +  F    ++                   +    +N +        
Sbjct: 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265

Query: 155 -IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV 210
                 +G +  WN+ T+KK+  F    +  S    + + +++ +  SD     +  
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 79.8 bits (195), Expect = 2e-16
 Identities = 23/382 (6%), Positives = 76/382 (19%), Gaps = 49/382 (12%)

Query: 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASA 288
            A  +  +  +        + + ++    +             +     +     +  + 
Sbjct: 2   PALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 289 DNSIKMWIFD--TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346
              I     D         L                  +G+ + +            +  
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406
               E+        A+ ++                 ++      +  + ++     Y   
Sbjct: 121 PPRLEVFSTADGLEAKPVRT-----------FPMPRQVYLMRAADDGSLYVAGPDIYKMD 169

Query: 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466
           ++       +           +    +    +     +                      
Sbjct: 170 VKTGKYTVAL-----PLRNWNRKGYSAPDVLYFWPHQSPRHE------------------ 206

Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHR 525
                  +                +A         D K G+     +     L       
Sbjct: 207 ------FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 260

Query: 526 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
                        +  +D+   ++++             F + G  L   G    L +++
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319

Query: 586 VILARQIDAIHV---DVSITAL 604
                ++  I +   D+S T  
Sbjct: 320 PDTLEKVKNIKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 75.9 bits (185), Expect = 2e-15
 Identities = 32/338 (9%), Positives = 79/338 (23%), Gaps = 22/338 (6%)

Query: 190 SPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249
               + + V      +HV +V  D    +     +        + D +         G I
Sbjct: 5   KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 64

Query: 250 SIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304
              +L+  +                ++ S     +   + +           +       
Sbjct: 65  YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 124

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKR 360
            +     G  A P+         +++ A  D     A      +  +  +      +   
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW---RLQNFVLGEHIL 417
            RK     + L   P  +                   D A A +       +   G+   
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 244

Query: 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477
           +   +          S       +      + +++L+                   +   
Sbjct: 245 QEFADLTELYFTGLRSPKDPN-QIYGVLNRLAKYDLKQR---------KLIKAANLDHTY 294

Query: 478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG 515
             VA D     +   G   D+ V++    +     ++ 
Sbjct: 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 9/95 (9%), Positives = 28/95 (29%), Gaps = 2/95 (2%)

Query: 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHVDQNG 622
                ++++ +    +L + DV       +  +          ++P+       +     
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 623 VYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSS 657
           +Y        +      S   G+   S+   ++S 
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 98

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 75.7 bits (184), Expect = 3e-15
 Identities = 44/379 (11%), Positives = 93/379 (24%), Gaps = 39/379 (10%)

Query: 229 ALAFS-SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287
           A  FS  DG  L+A   S G   I ++       V++      I  +    +  V     
Sbjct: 7   AEDFSPLDGD-LIAF-VSRGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGDTKVAFIHG 61

Query: 288 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347
                 + I+D   G                  +F  N  ++ + G DR  +   V  D+
Sbjct: 62  TREGDFLGIYDYRTGKAE---------------KFEENLGNVFAMGVDRNGKFAVVANDR 106

Query: 348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407
                      K     + +E  +    +              +  T        +V+ +
Sbjct: 107 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 166

Query: 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE 467
           +        +       +   A    A        +        +     +    +    
Sbjct: 167 EG-----RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL-NFSFEVVSKP 220

Query: 468 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVN 527
                  G          +    +  Y  +         ++          ++      +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 528 G--------LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579
                          +  V+  +DV      RK     + +TD   S D K ++    DG
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 580 SLRIWDVILARQIDAIHVD 598
            +  + +        +  D
Sbjct: 337 KIYTFPLEKPEDERTVETD 355

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 8e-14
 Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 17/293 (5%)

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364
           + +  RS  S    C+++  + + I+S  +D   +++     +  R L+    +    + 
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 365 -KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423
            +           +        E     +  C       +   +      +  +      
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-RSNYAHNGEVVGVAC 482
                       G+ A +       +     SG       + S        NG   G+AC
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 483 DSTNTLMISAGYH-GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 541
                 ++ +G     I++WD +        E G   +       N  + + A D  I++
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKV 242

Query: 542 FDVVA---------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
           +D+VA            +R    H+ R+    F  D   ++SS  D ++ IWD
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 9e-11
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 158 SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV 217
           S + ++++WN ST + +    G    I+         +V  G SD  I + ++     L 
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACL- 211

Query: 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--------EAHDN 269
                + G    +         + SGA  G I +W+L                    H  
Sbjct: 212 ---RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268

Query: 270 AIISLHFFANEPVLMSASADNSIKMW 295
            +  L F  +E  ++S+S D++I +W
Sbjct: 269 RVFRLQF--DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 47/295 (15%), Positives = 94/295 (31%), Gaps = 47/295 (15%)

Query: 84  HQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKG------IEENLAPVGHVKLDD 137
            ++   S  S  V  L    + I+S   D  + IW          +  +   V  ++ D+
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 138 KFTPTCIMHPDTYLNKVIVGSQ--------------------------EGSLQLWNISTK 171
           +   T        +  V  G                            + S+ +W++++ 
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTAL 230
             +   +      ++       D   V  S D  I V N    E + T  +  +  +  L
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACL 184

Query: 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN 290
            +      L+ SG+S   I +W++E       +R    +  +      +   ++S + D 
Sbjct: 185 QYRDR---LVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDG 238

Query: 291 SIKMWIFDT-----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
            IK+W                LR    HS     ++F  +   I+S+  D    +
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC 200
              I         V+ GS + +++LW+I     L   +G    +           +  G 
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGA 235

Query: 201 SDGKIHVHNVRYDEELVTFTHSM--------RGAVTALAFSSDGQPLLASGASSGVISIW 252
            DGKI V ++    +      ++         G V  L F       + S +    I IW
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292

Query: 253 N 253
           +
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 9e-05
 Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 12/205 (5%)

Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR 211
            K++ G ++ ++++W+ +T +      G   S+        + +     S  ++   N  
Sbjct: 26  QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG 85

Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271
                +         +                     I++W++      ++ R    +  
Sbjct: 86  EMLNTLIHHCEAVLHLRFNNGMMVTCS------KDRSIAVWDMASPTDITLRRVLVGHRA 139

Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
                  ++  ++SAS D +IK+W   T       +R  +GH     C+++    R ++S
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTST----CEFVRTLNGHKRGIACLQY--RDRLVVS 193

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRH 356
              D   RL+ +      R L    
Sbjct: 194 GSSDNTIRLWDIECGACLRVLEGHE 218

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           L+ +      +  +   C   D + ++S   D +++IWD 
Sbjct: 5   LQRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDK 42

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 6/135 (4%)

Query: 494 YHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 551
               I VWD       +   V         V    +  + + + D  I++++      VR
Sbjct: 113 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 172

Query: 552 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMD 611
              GH   I    +    + ++S   D ++R+WD+     +  +     +    +  +  
Sbjct: 173 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-CIRFDNK 229

Query: 612 VLATAHVDQNGVYLW 626
            + +   D   + +W
Sbjct: 230 RIVSGAYDGK-IKVW 243

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 69.2 bits (167), Expect = 3e-13
 Identities = 32/298 (10%), Positives = 80/298 (26%), Gaps = 19/298 (6%)

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH-------- 356
            + + R GH+     +   A+G+ + SA  +     + +     +R     H        
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 357 ------VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410
                 +   +    +K        V +      +       +    D   A     ++ 
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470
            +  H                +S    F  +G     +  + L           +     
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530
            +                  S          +F+     S       +  + +   N  L
Sbjct: 183 TSVAFSNN---GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 531 ATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           AT + D  + ++++   +   +     H     +     +   ++S+G D +++ W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 31/326 (9%), Positives = 73/326 (22%), Gaps = 37/326 (11%)

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236
             G   +I++  SS     +    ++G I+  ++        F       +T +  +S  
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK- 66

Query: 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296
             L        +  +         S       ++       + +  +  A+    I ++ 
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
                  P          +              +   +     +  V       E++   
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
                                                    D ++  +            
Sbjct: 187 ------------------------------FSNNGAFLVATDQSRKVIPYSVANNFELAH 216

Query: 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
                 +   V   + S        G+    +  +N+         +        AH   
Sbjct: 217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK------GAHAMS 270

Query: 477 VVGVACDSTNTLMISAGYHGDIKVWD 502
            V        T ++SAG   +IK W+
Sbjct: 271 SVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 275 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334
            +  +   L + S DNS+ +W  +        +  +  H+   +    + N   I+SAGQ
Sbjct: 231 SWSPDNVRLATGSLDNSVIVW--NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

Query: 335 DRAFRLFSV 343
           D   + ++V
Sbjct: 289 DSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 187 CVSSPALDVVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGAS 245
              SP    +A G  D  + V N+    +  +    +   +        +    + S   
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQ 288

Query: 246 SGVISIWNL 254
              I  WN+
Sbjct: 289 DSNIKFWNV 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 6e-13
 Identities = 43/329 (13%), Positives = 111/329 (33%), Gaps = 23/329 (6%)

Query: 11  GYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALA---SYRD 67
            ++ + + F   R+     V+ S      +++      +         + +     +   
Sbjct: 17  DHVITCLQFCGNRI-----VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71

Query: 68  YTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENL 127
                    +   +    + T   H++ V  + L  + ++S   D  + +W  +      
Sbjct: 72  SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------ 125

Query: 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSC 187
              G            +        +V+ G+ +  +++W+  T+  L+  +G  + + S 
Sbjct: 126 --TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 183

Query: 188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247
                   V  G  D  I V +V     + T T   +   + +    +   +L SG +  
Sbjct: 184 QFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELKDN---ILVSGNADS 237

Query: 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307
            + IW+++  +    ++  + +         N+  ++++S D ++K+W   T +    L+
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 308 RFRS-GHSAPPLCIRFYANGRHILSAGQD 335
              S G       IR            ++
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 34/335 (10%), Positives = 95/335 (28%), Gaps = 12/335 (3%)

Query: 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361
           G+ +  +   GH    +       G  I+S   D   +++S +  +  R L        +
Sbjct: 4   GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421
            +++                          +          ++   +             
Sbjct: 63  SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481
           +  T      +             G          + +    +     +          +
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 182

Query: 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 541
                  ++S      I+VWD +  +         SL   +  + + +L +   D  +++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKI 241

Query: 542 FDVVALRMVRKFEGHTDRI-TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           +D+   + ++  +G         C   +  ++++S  DG++++WD+     I  +    S
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301

Query: 601 ------ITALSLSPNMDVLATAHVD---QNGVYLW 626
                 +  +  S    V A    +   +  + + 
Sbjct: 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 50/425 (11%), Positives = 113/425 (26%), Gaps = 93/425 (21%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMR 224
           W     K     KG    + +C+     + +  G  D  + V +    + L T   H+  
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-- 57

Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 284
           G V +     +         S        +        I   + +         +E  ++
Sbjct: 58  GGVWSSQMRDNIII------SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344
           S S D ++++W  +T      L                  +GR ++S   D   +++   
Sbjct: 112 SGSRDATLRVWDIETGQCLHVL------MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 165

Query: 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404
            +     L                           +     + D  +VV+  +DT    V
Sbjct: 166 TETCLHTLQGHT-----------------------NRVYSLQFDGIHVVSGSLDT-SIRV 201

Query: 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464
           W ++      + +     + +      +    N  V G A   ++ +++++G    +   
Sbjct: 202 WDVETG----NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQG 255

Query: 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH 524
            ++  +                  +I++   G +K+WD K  +                 
Sbjct: 256 PNKHQSAVTC-------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL--------- 299

Query: 525 RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS---- 580
                                      +  G    +     S           +G+    
Sbjct: 300 ---------------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332

Query: 581 LRIWD 585
           L + D
Sbjct: 333 LLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 16/150 (10%)

Query: 76  HIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL 135
            +  V+  + + T + H +  + + L    ++S + D  + IW  K  +           
Sbjct: 200 RVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL-----QTLQ 254

Query: 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-----GWGSSISSCVSS 190
                 + +       N VI  S +G+++LW++ T + +         G G  +    +S
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 191 PALDVVAVGCSDG----KIHVHNVRYDEEL 216
               V AVG  +G    K+ V +  +D ++
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVLD--FDVDM 342

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 2e-12
 Identities = 46/375 (12%), Positives = 114/375 (30%), Gaps = 25/375 (6%)

Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271
           +  +  T    M   +T L F  +    + +GA   +I +++   ++    +   HD  +
Sbjct: 1   FVPQRTTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQL-SGHDGGV 56

Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
            +L + A+  +L+S S D ++++W                  +   L I  Y N ++I++
Sbjct: 57  WALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVT 113

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
             +D    ++ + ++    +  + H          +                        
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 173

Query: 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
           VV+   D                 ++         +   +      ++ +          
Sbjct: 174 VVSGSYDN---------------TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 218

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
                  R   L+  E          +      ++  ++SA   G I+ WD      K  
Sbjct: 219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS 278

Query: 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGK 570
           +    +L  I    V+  +     +    ++++ + ++V        D+I    F     
Sbjct: 279 YHHT-NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL 337

Query: 571 WLLSSGMDGSLRIWD 585
            + +   DG   +  
Sbjct: 338 -VAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 2e-09
 Identities = 35/362 (9%), Positives = 95/362 (26%), Gaps = 26/362 (7%)

Query: 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS 201
           TC+   D Y+   I G+ +  +++++   KK L +  G    + +   +    ++  G +
Sbjct: 17  TCLQFEDNYV---ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72

Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
           D  + V +++       F                    + +G+    + +W L K   +S
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK---ES 129

Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321
            + +  +     L F   E               +   +     ++     ++     + 
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189

Query: 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381
                  +          ++   + +         +     +                  
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-----------MYT 238

Query: 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441
            +        +         A               R    + T + A T     +  ++
Sbjct: 239 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298

Query: 442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501
             +      +NL+SG    + +            ++  V      TL+ +    G   + 
Sbjct: 299 SGSENQFNIYNLRSGKLVHANIL-------KDADQIWSVNF-KGKTLVAAVEKDGQSFLE 350

Query: 502 DF 503
             
Sbjct: 351 IL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 1e-07
 Identities = 44/363 (12%), Positives = 110/363 (30%), Gaps = 20/363 (5%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324
             H  ++I+      +  +++ + D  I+++  D+ +   + L   SGH      +++ A
Sbjct: 9   RGHMTSVITC-LQFEDNYVITGADDKMIRVY--DSINK--KFLLQLSGHDGGVWALKY-A 62

Query: 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384
           +G  ++S   DR  R++ + +   +      +   R   +   +       V       +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN--IKYIVTGSRDNTL 120

Query: 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444
                    +   D  + + + L      E+               T+S  GN  V G+ 
Sbjct: 121 HVWKL-PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504
              +  +++            ++R               ++    I      + ++    
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239

Query: 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC 564
                    +  S   +V    +             +    A    RKF  H   ++   
Sbjct: 240 QGHTALVGLLRLSDKFLVSAAAD-----------GSIRGWDANDYSRKFSYHHTNLSAIT 288

Query: 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVY 624
                  +L SG +    I+++   + + A  +  +    S++     L  A       +
Sbjct: 289 TFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSF 348

Query: 625 LWV 627
           L +
Sbjct: 349 LEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
                     +F    +++S+  +    D + V  S+ + +++N+R  + +         
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLE 255
            + ++ F      L+A+    G   +  L+
Sbjct: 326 QIWSVNFKGKT--LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 3/130 (2%)

Query: 553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLSPNMD 611
             GH   +   C   +  ++++   D  +R++D I  + +  +   D  + AL  +    
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G 65

Query: 612 VLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDV 671
           +L +   D+      + +   +      +       +         V G +D       +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 672 HRTDRVPKDS 681
            +   VP   
Sbjct: 126 PKESSVPDHG 135

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 7e-04
 Identities = 21/161 (13%), Positives = 56/161 (34%), Gaps = 3/161 (1%)

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
           H   V+       +  +I+      I+V+D   +    +       V  + +   G+L +
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 533 VADDLVIRLFDV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
            + D  +R++D+       V +    T R  D    ++ K++++   D +L +W +    
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 591 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631
            +     +     +  +P  +      +  +   +      
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.7 bits (158), Expect = 5e-12
 Identities = 33/323 (10%), Positives = 92/323 (28%), Gaps = 20/323 (6%)

Query: 269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF--YANG 326
           N    L +      +      ++    + D     P +++F    S+    ++F      
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
           +++ S  +     ++    D++S  +     ++         +       I++D    R 
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD-------ISWDFEGRRL 130

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
                                   V G            +    +++   + +V+   G 
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506
             +         +          +            +   T+                 +
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDS--------GEFVITVGSDRKISCFDGKSGEFLK 242

Query: 507 DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF--- 563
            ++   E     +  +    +   ATV  D  IR++DV   + V+K+     ++ +    
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302

Query: 564 CFSEDGKWLLSSGMDGSLRIWDV 586
             +     ++S  +DG+L  +++
Sbjct: 303 VVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (145), Expect = 2e-10
 Identities = 26/333 (7%), Positives = 71/333 (21%), Gaps = 36/333 (10%)

Query: 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHDNAIISLHF--FAN 279
           R   T L++      +      S  +   +    ++  V        + + ++ F     
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQD 335
              L S      + +W +        +           + P   I +   GR +   G+ 
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395
           R      +  D  +                                ++            
Sbjct: 137 RDNFGVFISWDSGNSLGEVSG------------------------HSQRINACHLKQSRP 172

Query: 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455
                      +  +                  +       +               +  
Sbjct: 173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 232

Query: 456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG 515
              +          +       +       +    + G    I+VWD        +W + 
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292

Query: 516 CSLVKI----VYHRVNGLLATVADDLVIRLFDV 544
              +      V    NG + +++ D  +  +++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 196 VAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254
            A   +D  I V +V   + +  +T    +     +   + G   + S +  G ++ + L
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 7/71 (9%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISS---CVSSPALDVVAVG 199
                     K      + ++++W+++T K + ++      + +    V +     +   
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 200 CSDGKIHVHNV 210
             DG ++ + +
Sbjct: 315 SLDGTLNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.5 bits (155), Expect = 9e-12
 Identities = 43/322 (13%), Positives = 84/322 (26%), Gaps = 31/322 (9%)

Query: 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283
           RG    L  +  G   +     + V     +       +  E H +         +    
Sbjct: 17  RGTAVVLGNTPAGD-KIQYCNGTSVY-TVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYC 73

Query: 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
            S     ++++W          L       S P   I + +  + I + G+ R       
Sbjct: 74  ASGDVHGNVRIWDTT--QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403
           + D  +   +    A+    +  K          + D                      +
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463
           V                            +  G+        G I  +N   G   G + 
Sbjct: 192 VHS-----------------------VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF- 227

Query: 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 523
           +     N AH+G V G+      T + SA     IK+W+     ++    VG  +     
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287

Query: 524 --HRVNGLLATVADDLVIRLFD 543
                   L +++ +  I   +
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.3 bits (144), Expect = 2e-10
 Identities = 26/300 (8%), Positives = 70/300 (23%), Gaps = 26/300 (8%)

Query: 287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346
               S+      +           + HS      +   +G +  S       R++   Q 
Sbjct: 35  CNGTSVYTVPVGS----LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90

Query: 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406
               + +    +   + +               +   I           H+         
Sbjct: 91  THILKTTIPVFSGPVKDISWD-----------SESKRIAAVGEGRERFGHVFLFDTGTSN 139

Query: 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466
                    +     +     +  + S     A+        +    +      S     
Sbjct: 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 199

Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV 526
           + S +A  G    +   +                      D         S+  + +   
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDG----------TKTGVFEDDSLKNVAHSGSVFGLTWSPD 249

Query: 527 NGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGKWLLSSGMDGSLRIWD 585
              +A+ + D  I++++V  L++ +     T             + L+S   +G +   +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
           V +        +       V     V +L     +  H+ + T    S  G +  S  + 
Sbjct: 21  VVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 579 GSLRIW 584
           G++RIW
Sbjct: 80  GNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
                +    +      S+     SP    +A   +D  I + NV   +   T     R 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLE 255
               L      Q  L S +++G I+  N E
Sbjct: 283 EDQQLGIIWTKQ-ALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSL 606
              K   H+  +    +S DG  + S+  D +++IW+V   +    I     +    L +
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 607 SPNMDVLATAHVDQNGVYLW 626
                 L +   +   +   
Sbjct: 290 IWTKQALVSISANGF-INFV 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 27/332 (8%), Positives = 75/332 (22%), Gaps = 11/332 (3%)

Query: 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAF 338
           +++ +  + + +   DT       +   +     P+       GR   +           
Sbjct: 4   ILAPARPDKLVVI--DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398
            L +     +    +     K      +  +   L    +    E+   +         D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458
                  +         +L    +              +            +       +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518
           +   L +  +   +                     Y   +   D +  ++  R      +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
                              V+  FD+     +++             S DG  +   G  
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL 300

Query: 579 GSLRIWDVILARQIDAIHV----DVSITALSL 606
           G L  +D     +   + +     +S+ ++ L
Sbjct: 301 GDLAAYDAETLEKKGQVDLPGNASMSLASVRL 332

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.6 bits (145), Expect = 3e-10
 Identities = 34/333 (10%), Positives = 84/333 (25%), Gaps = 27/333 (8%)

Query: 194 DVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIW 252
           D +       K+ V +          T             +  G+   A+   S  +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 253 NLE----KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT-------D 301
           +L       R+     E    ++       +   L    +   +++  F+         D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361
            +    R           + +  +G  +   G+D        + D ++  L +    +  
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL------HVMDPEAGTLVEDKPIQSW 175

Query: 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421
                 + ++            +    +            AY   L    L    +    
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235

Query: 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481
                V   + +          A   +E F+L+           +             V 
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN---------ASIKRVPLPHSYYSVN 286

Query: 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514
             +  + +   G  GD+  +D +  + K + ++
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 5e-11
 Identities = 51/394 (12%), Positives = 108/394 (27%), Gaps = 51/394 (12%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH---------SA 315
           +AHD  I S+         +S S D  +K+W     D +    +  S             
Sbjct: 11  KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE------- 368
                R       + +         + + ++ +++++    +      +K          
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 428
                         +++   +        D + +        +  +  +           
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488
           +  IS  G  A  G   G ++   L +      Y   S+ S   ++  +  V      +L
Sbjct: 189 SVDISERGLIAT-GFNNGTVQISELSTLRPL--YNFESQHSMINNSNSIRSVKFSPQGSL 245

Query: 489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548
           +  A              +   R                                  + +
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSV-------------------------PTHSSQ 280

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-----VDVSITA 603
                  H+  +    F++ G+ L S+G DG LR WDV    +I  ++     +++    
Sbjct: 281 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340

Query: 604 LSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 637
           L++  + D LA   V          R     D N
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 46/318 (14%), Positives = 85/318 (26%), Gaps = 58/318 (18%)

Query: 92  HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-------DDKFTPTCI 144
           H A +  +       +S   DG + +W  K ++                          I
Sbjct: 13  HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG---------------WGSSISSCVS 189
                 L  V   S  G L  + I+ + +  +                  W     +   
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 190 SPALDVVAVGCSDGKIHVHNVRYDEEL-----------------VTFTHSMRGAVTALAF 232
                 +      G  ++       +                  V    +     T++  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSAS 287
           S  G  L+A+G ++G + I  L   R             + N+I S+ F     +L  A 
Sbjct: 193 SERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Query: 288 ADNSIKM------------WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335
             NS                         +       HS+  + + F  +G  + SAG D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 336 RAFRLFSVIQDQQSRELS 353
              R + V   ++   L+
Sbjct: 311 GKLRFWDVKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 45/409 (11%), Positives = 107/409 (26%), Gaps = 72/409 (17%)

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG----------- 225
            K   + I S  +            DG + V + +  +       S              
Sbjct: 10  GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRR---------LQSVIREAHDNAIISLHF 276
            + A+   +    L+A+ + SG +  + + +           L  +  +   ++  +L +
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 277 FANEP-----VLMSASADNSIKMWIFDTTDGDPRLLRFRS--------------GHSAPP 317
            A+        L++     +  +W F     +   L                    S   
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377
             +     G  I +   +   ++  +   +       +H            +      ++
Sbjct: 188 TSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437
           A         +    +T +       +  L               + + V + + +  G 
Sbjct: 247 AIAHDS----NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV----VGVACDSTNTLMISAG 493
                   G +  +++++     +           H  ++      +A D     +   G
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTL--------NMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 542
                 V+D K      R  +G          +N  L  V  D  IR F
Sbjct: 355 ------VFDVKFLKKGWRSGMG--------ADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 17/91 (18%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--------------ILARQIDAI 595
               + H   I          + +S   DG L++WD                   +    
Sbjct: 7   ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 596 HVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
           HVDV       +  + ++AT     + +  +
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGD-LLFY 94

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.0 bits (143), Expect = 2e-10
 Identities = 37/292 (12%), Positives = 79/292 (27%), Gaps = 11/292 (3%)

Query: 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA-KR 360
           G   +L+  SGH+     +        ++S   D     +S     Q        +   +
Sbjct: 1   GHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK 56

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A++      +  LK           +    +               L         +   
Sbjct: 57  AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116

Query: 421 PENPTAVKACTIS----ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
               +   A ++S    A G           +    +   +        S  S       
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176

Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536
           +          L            W F+   + +                  L+AT + D
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236

Query: 537 LVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587
             I ++ V   +++++    H D + +  +      L+SSG D  ++ W+V+
Sbjct: 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
                  K+       +   +       D+VA G  D  I +++V+   +++   ++ + 
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWN 253
            V  L + +     L S  +   I  WN
Sbjct: 260 GVNNLLWETPST--LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 200 CSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259
               ++      +    +           A     +   + A+G+    I I+++++   
Sbjct: 191 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV-ATGSLDTNIFIYSVKRPMK 249

Query: 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
                 AH + + +L  +     L+S+ AD  IK W
Sbjct: 250 IIKALNAHKDGVNNLL-WETPSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 34/333 (10%), Positives = 91/333 (27%), Gaps = 49/333 (14%)

Query: 170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTA 229
             + L    G    I++   +P    +  G  DG+I   +        +        + +
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS------SMHQDHSNLIVS 51

Query: 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289
           L  S   +    S   +  ++     +   Q  +  A+++   ++    ++ +++ +   
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111

Query: 290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349
           + IK    ++      L +                    +  +   +             
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP------ 165

Query: 350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409
                                      I+   +E        +    +   Q+   +   
Sbjct: 166 -------------------------SYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 200

Query: 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469
           +      +      P    A       +    G+    I  ++++  +     L+     
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN----- 255

Query: 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502
             AH   V  +  ++ +TL +S+G    IK W+
Sbjct: 256 --AHKDGVNNLLWETPSTL-VSSGADACIKRWN 285

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 54/401 (13%), Positives = 100/401 (24%), Gaps = 68/401 (16%)

Query: 227 VTALAFSSDGQPLL----ASGASSGVISIWNLEKRRLQSVIREAHDNAII-----SLHFF 277
               A + D + +     A  A+     + + E  R+  +I        +     S    
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAH 63

Query: 278 ANEPVLMSASADNSIKMWIFDTTDGDPR-----LLRFRSGHSAPPLCIRFYANGRHILSA 332
           A+      A  + +  + +FD     P          R      P       +G+ +L  
Sbjct: 64  ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY 123

Query: 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392
               A  +  V  + ++                        + +   DC  I        
Sbjct: 124 QFSPAPAVGVVDLEGKAF----------------------KRMLDVPDCYHIFPTAPDTF 161

Query: 393 VTCHMDTAQAYVWRLQ-NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
                D + A V           H     PE+   +     S      V  T  G I + 
Sbjct: 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
           +L SG ++         +  A                 ++     D        R     
Sbjct: 222 DLSSGDAK------FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR----- 270

Query: 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571
                                      + + D      + KFE     I     S+D K 
Sbjct: 271 ----------------DEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKP 313

Query: 572 LL--SSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSPN 609
           LL   S  D +L I D     ++ ++  +      ++ +  
Sbjct: 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 3/80 (3%)

Query: 187 CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL-ASGAS 245
            +     D      +   + V + +  E L  F       + ++  S D +PLL A    
Sbjct: 264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTG 321

Query: 246 SGVISIWNLEKRRLQSVIRE 265
              + I + E       + +
Sbjct: 322 DKTLYIHDAESGEELRSVNQ 341

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 7e-05
 Identities = 30/342 (8%), Positives = 85/342 (24%), Gaps = 43/342 (12%)

Query: 197 AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA---------SGASSG 247
           A   +  +  V +      +        G +     + DG  +            G  + 
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMID---GGFLPNPVVADDGSFIAHASTVFSRIARGERTD 78

Query: 248 VISIWNLEKRRLQSVIREAHDNAII------SLHFFANEPVLMSASADNSIKMWIFDTTD 301
            + +++       + I        +            +   L+      +  + + D   
Sbjct: 79  YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 138

Query: 302 GD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
                       +    +AP        +G     A          +   +      +  
Sbjct: 139 KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPEDEFL 196

Query: 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
           +   A   K        + V      +I + D  +     +   +A     +        
Sbjct: 197 INHPAYSQKAG------RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250

Query: 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
            +    +    +   +    +     TA  ++   + ++G            + +    E
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEMGHE 301

Query: 477 VVGVAC--DSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG 515
           +  +    D    L   +     + + D + G +L+S  ++G
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 26/208 (12%), Positives = 60/208 (28%), Gaps = 15/208 (7%)

Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213
            +     G + L + ST +        G ++     S +   + V   DGK+++ ++   
Sbjct: 35  SVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93

Query: 214 EELVTFTHSM----RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN 269
           E        +    R   T+     + +  +A         I + E    + +       
Sbjct: 94  EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

Query: 270 AIISLHFFANEPVLMSASADNSI---------KMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
                +        + AS              K+ + D TD +  L              
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEISAERFLHDG 212

Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQ 348
               + R+ ++A   R   +    ++ +
Sbjct: 213 GLDGSHRYFITAANARNKLVVIDTKEGK 240

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 7/106 (6%)

Query: 527 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           N    T+ D   I L D     +    +     +     S  G++L   G DG + + D+
Sbjct: 32  NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDL 90

Query: 587 ILARQIDAIHVDVS------ITALSLSPNMDVLATAHVDQNGVYLW 626
            +        + +        T+                     + 
Sbjct: 91  WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 18/162 (11%), Positives = 42/162 (25%), Gaps = 18/162 (11%)

Query: 483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 542
           D  N   ++    G I + D    ++K+  + G ++           L  +  D  + + 
Sbjct: 29  DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMI 88

Query: 543 DVVALRM-----VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDVILARQID--- 593
           D+          ++         T      + K+ +  +       I D           
Sbjct: 89  DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148

Query: 594 ---------AIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
                      H +  + A+  S           +   + L 
Sbjct: 149 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 190

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (87), Expect = 0.004
 Identities = 39/394 (9%), Positives = 99/394 (25%), Gaps = 44/394 (11%)

Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
            G+I + +    E           AV     S+ G+  L      G +++ +L  +   +
Sbjct: 41  AGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTT 97

Query: 262 VIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317
           V          +   S      +   ++ +        I D    +P   + +S      
Sbjct: 98  VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ-YVIMDGETLEP--KKIQSTRGMTY 154

Query: 318 LCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376
               ++   R   + A   R   + +V +  +   +    +          E  L     
Sbjct: 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL---HD 211

Query: 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG 436
              D +         +   +       +   +  ++          +P           G
Sbjct: 212 GGLDGSHRYF-----ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 266

Query: 437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496
                   G               + +      +  +  +++     +     +    H 
Sbjct: 267 PVWATSHMGDD-----------SVALIGTDPEGHPDNAWKILDSF-PALGGGSLFIKTHP 314

Query: 497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556
           +     +   D     E   S    V+      +     D   +   +     + +    
Sbjct: 315 N---SQYLYVDATLNPEAEISGSVAVFDIKA--MTGDGSDPEFKTLPIAEWAGITE---G 366

Query: 557 TDRITDFCFSEDGKWLLSS-----GMDGSLRIWD 585
             R+    F++DG  +  S       + +L + D
Sbjct: 367 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 21/194 (10%), Positives = 55/194 (28%), Gaps = 9/194 (4%)

Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213
            +     G + L +  +KK +      G ++     S +   + V   D +I + ++   
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 214 EELVTFT----HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN 269
           E             R   ++     + +  +A        +I + E    + ++      
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329
                +        + AS ++   +        +   +   +      L +        +
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIV----NVKETGKVLLVNYKDIDNLTVTSIGAAPFL 209

Query: 330 LSAGQDRAFRLFSV 343
              G D + R F  
Sbjct: 210 ADGGWDSSHRYFMT 223

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 32/389 (8%), Positives = 95/389 (24%), Gaps = 47/389 (12%)

Query: 228 TALAFSSDGQPLLA-SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
                  D   L + +   +G I++ + + +++  VI      A+      A+   L+  
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI--DTGYAVHISRMSASGRYLLVI 79

Query: 287 SADNSIKMWIFDTTDGDPRL-LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345
             D  I M      +      ++      +           R+ ++         F+++ 
Sbjct: 80  GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ--FAIMD 137

Query: 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405
            +                 +    E ++  +IA         +    +    +T +  + 
Sbjct: 138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-------EHPEFIVNVKETGKVLLV 190

Query: 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS--------GI 457
             ++                        +   + +                        +
Sbjct: 191 NYKDIDNLTVTSIGAAPFLADG---GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 247

Query: 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 517
            +  +        +   G V   +     ++ +      +   + +K   +      G  
Sbjct: 248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK--KVAELQGQGGG 305

Query: 518 LVKIVYHR-------VNGLLATVADDLVIRLFDVVALRMVRKFEGHTD---------RIT 561
            + I  H                     + +FD+  L    +     +         R+ 
Sbjct: 306 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV 365

Query: 562 DFCFSEDGKWLLSS-----GMDGSLRIWD 585
              +++ G  +  S         +L + D
Sbjct: 366 QPEYNKRGDEVWFSVWNGKNDSSALVVVD 394

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 15/189 (7%)

Query: 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNG------LLATVADDLVIRLFDVVALRMVRKFE 554
           W     +++  W+V          ++N          T+ D   I L D  + ++V+  +
Sbjct: 2   WGMP--EMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID 59

Query: 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL------SP 608
                +     S  G++LL  G D  + + D+          + + I A S+        
Sbjct: 60  TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118

Query: 609 NMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQ 668
                           +     +           +         P V+++    +     
Sbjct: 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178

Query: 669 PDVHRTDRV 677
            +V  T +V
Sbjct: 179 VNVKETGKV 187

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 30/313 (9%), Positives = 92/313 (29%), Gaps = 15/313 (4%)

Query: 279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRA 337
            + V +++     I +W  +  +G   L +           +    + R++    + +  
Sbjct: 3   KQTVYIASPESQQIHVWNLNH-EGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397
              + +  D  +   +       +      + + +   V +++   +      + +   +
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120

Query: 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457
                 +    +  +               + C  +   +  ++      +         
Sbjct: 121 VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--GAG 178

Query: 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 517
            R      +E+  Y  N        +S+  +      HG+I+         ++  +   +
Sbjct: 179 PRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA 232

Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT---DRITDFCFSEDGKWLLS 574
               +      L A      +I +F V     V   EG      +   F     GK+L++
Sbjct: 233 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 292

Query: 575 SGMD-GSLRIWDV 586
           +G     + ++++
Sbjct: 293 AGQKSHHISVYEI 305

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 36/313 (11%), Positives = 72/313 (23%), Gaps = 17/313 (5%)

Query: 195 VVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
           V        +IHV N+ ++  L +T    + G V  +  S D + L         +  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 254 LE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311
           +      L      A   ++  +        +   S +                ++    
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 125

Query: 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371
           G            N    + A +     LF+V  D          V             +
Sbjct: 126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE---GAGPRHM 182

Query: 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431
              P   +           +V             +  + +           +        
Sbjct: 183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242

Query: 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491
                +          I  F++    S  S                 G   D +   +I+
Sbjct: 243 HLYACDR-----TASLITVFSVSEDGSVLSKEGFQPTETQPR-----GFNVDHSGKYLIA 292

Query: 492 AGYHGD-IKVWDF 503
           AG     I V++ 
Sbjct: 293 AGQKSHHISVYEI 305

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 29/316 (9%), Positives = 76/316 (24%), Gaps = 41/316 (12%)

Query: 201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260
               I V +V  ++   T              S DG  +  + A S  +SI +     + 
Sbjct: 10  ESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67

Query: 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
           + +        +++     +  + + ++     +     T      +         PL +
Sbjct: 68  ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT------VAGTVKTGKSPLGL 121

Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380
               +G+ +                       +             K     +    +  
Sbjct: 122 ALSPDGKKL--------------------YVTNNGDKTVSVINTVTKAVINTVSVGRSPK 161

Query: 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 440
              +        V      + + +  + N V+    +   P         T +   N   
Sbjct: 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK 221

Query: 441 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIK 499
                  I+    +              +      +  G+A       + ++  +   + 
Sbjct: 222 YFNTVSMIDTGTNK------------ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVS 269

Query: 500 VWDFKGRDLKSRWEVG 515
           V D     + +   VG
Sbjct: 270 VIDTATNTITATMAVG 285

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	809
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	100.0
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.98
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.98
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.98
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.97
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.96
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.94
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.94
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.94
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.93
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.91
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.87
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.83
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.82
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.79
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.72
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.67
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.6
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.55
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.47
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.46
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.46
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.44
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.41
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.38
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.37
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.3
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.14
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.89
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.87
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.8
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.76
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.64
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.62
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.56
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.55
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.49
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.4
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.38
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.32
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.25
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.24
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.12
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.98
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.92
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.88
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.87
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.69
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.48
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.81
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.64
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.74
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.7
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.14
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.23

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=293.35  Aligned_cols=286  Identities=13%  Similarity=0.213  Sum_probs=213.9

Q ss_pred             CCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCC-EEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf             334652799994599989998199947999920799995-0279435889999669990399799999789978999963
Q 003579          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       266 ~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (809)
                      .|...|.+++|+|++++|++++ |+.|++|++....... .......+|...|.+++|+|++++|++++.|+.|++|++.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC
T ss_conf             9999289999989999999997-998899773677633116876404889968999986799889886123321111111


Q ss_pred             ECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCC
Q ss_conf             05432120223577987520101433026841277512311466630389642996099999012463215420699999
Q 003579          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (809)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  424 (809)
                      .......                                                                  .....+.
T Consensus       128 ~~~~~~~------------------------------------------------------------------~~~~~~~  141 (337)
T d1gxra_         128 APTPRIK------------------------------------------------------------------AELTSSA  141 (337)
T ss_dssp             CC--EEE------------------------------------------------------------------EEEECSS
T ss_pred             CCCCCCC------------------------------------------------------------------CCCCCCC
T ss_conf             1111111------------------------------------------------------------------1111111


Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf             97599999689989999937992999978778300266075522456755647999991899899999576709999779
Q 003579          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (809)
Q Consensus       425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  504 (809)
                      ..+..+++++++.++++++.++.+.+|++.++.......        .|...+.++++++++..+++++.|+.+++||+.
T Consensus       142 ~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~  213 (337)
T d1gxra_         142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             111111111111111111111111111111111111111--------111111101234443211223566553211111


Q ss_pred             CCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf             98534534418772799992079899999499929999957885899972499981069987899799999189909999
Q 003579          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  584 (809)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iw  584 (809)
                      +++.+..+.+...+.+++|+|++.++++++.|+.+++||+.+.+.. ....|...|++++|+|++++|++++.|+.|++|
T Consensus       214 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iw  292 (337)
T d1gxra_         214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW  292 (337)
T ss_dssp             TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECCCCCEEEEEECCCEEEEE
T ss_conf             1000002466661579997153030000002564211111111100-001245654169998999999999489969999


Q ss_pred             ECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             86976378876527635899976799838999737974999644
Q 003579          585 DVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       585 d~~~~~~i~~~~~~~~v~~i~~spdg~~lat~~~d~~~i~iW~~  628 (809)
                      |+.+++.+..+.+...|++++|+|++++|++++.|+ .|++|++
T Consensus       293 d~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~-~I~vWdl  335 (337)
T d1gxra_         293 RTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK-KATVYEV  335 (337)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS-CEEEEEE
T ss_pred             ECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCC-EEEEEEE
T ss_conf             899997999926999879999927999999990899-6999977

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=290.55  Aligned_cols=329  Identities=19%  Similarity=0.335  Sum_probs=176.6

Q ss_pred             EEEEEECCCEEEEEECCCCCE----EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECC------
Q ss_conf             999995778099996899916----9998289997899998599989999967994999990089079999416------
Q 003579          153 KVIVGSQEGSLQLWNISTKKK----LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS------  222 (809)
Q Consensus       153 ~i~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~------  222 (809)
                      ..+.+..++...+|+....+.    +....+|.+.|+|++|+|++++||+|+ |+.|++||+.+++.+..+..+      
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1erja_          30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD  108 (388)
T ss_dssp             TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             CCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf             3224688970898688777620541076079999689999999999999994-994899981364057663166544324


Q ss_pred             -----------CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCC
Q ss_conf             -----------997589999801999889999099809999889850222453133465279999459998999819994
Q 003579          223 -----------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS  291 (809)
Q Consensus       223 -----------~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~  291 (809)
                                 +...|++++|+|+++ +|++|+.||.|++||...++...... +|...|.++.+++++..+++++.++.
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             ----------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCC-CCEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             43211101467789889999889998-01213444111121111111111111-11111111011111111112221015


Q ss_pred             EEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHH
Q ss_conf             79999207999950279435889999669990399799999789978999963054321202235779875201014330
Q 003579          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (809)
Q Consensus       292 i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (809)
                      +++|+....    ........+ ....++.+.                                                
T Consensus       187 i~~~d~~~~----~~~~~~~~~-~~~~~~~~~------------------------------------------------  213 (388)
T d1erja_         187 VRIWDLRTG----QCSLTLSIE-DGVTTVAVS------------------------------------------------  213 (388)
T ss_dssp             EEEEETTTT----EEEEEEECS-SCEEEEEEC------------------------------------------------
T ss_pred             EEEEECCCC----CCCCCCCCC-CCCCCCCCC------------------------------------------------
T ss_conf             654101111----110000124-544211236------------------------------------------------


Q ss_pred             CCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             26841277512311466630389642996099999012463215420699999975999996899899999379929999
Q 003579          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  451 (809)
Q Consensus       372 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~  451 (809)
                                                                                   .++++++++|+.+|.|.+|
T Consensus       214 -------------------------------------------------------------~~~~~~l~~~~~d~~i~i~  232 (388)
T d1erja_         214 -------------------------------------------------------------PGDGKYIAAGSLDRAVRVW  232 (388)
T ss_dssp             -------------------------------------------------------------STTCCEEEEEETTSCEEEE
T ss_pred             -------------------------------------------------------------CCCCCEEEEECCCCEEEEE
T ss_conf             -------------------------------------------------------------8878758997389819996


Q ss_pred             ECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEE
Q ss_conf             78778300266075522456755647999991899899999576709999779985345344187727999920798999
Q 003579          452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA  531 (809)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la  531 (809)
                      +..++.....+.... ....+|...|.+++|+|+++++++++.||.|++||+.+..........                
T Consensus       233 ~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------  295 (388)
T d1erja_         233 DSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP----------------  295 (388)
T ss_dssp             ETTTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------------------
T ss_pred             ECCCCCCCEEECCCC-CCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC----------------
T ss_conf             345573000102443-334577898789999799999999978992898751577643210134----------------


Q ss_pred             EEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC-CEEEEE-----
Q ss_conf             99499929999957885899972499981069987899799999189909999869763788765276-358999-----
Q 003579          532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALS-----  605 (809)
Q Consensus       532 ~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~i~-----  605 (809)
                                   ...........|...|++++|+|++++|++++.||.|++||+.+++++..+..|. .|++++     
T Consensus       296 -------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~  362 (388)
T d1erja_         296 -------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS  362 (388)
T ss_dssp             ----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred             -------------CCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCC
T ss_conf             -------------4420011012455327899988999999999698979999999996999996889978999984674


Q ss_pred             -ECCCCCEEEEEEECCCEEEEEECC
Q ss_conf             -767998389997379749996447
Q 003579          606 -LSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       606 -~spdg~~lat~~~d~~~i~iW~~~  629 (809)
                       |+|++.+||+++.|+ .|++|+++
T Consensus       363 ~~spd~~~l~s~s~Dg-~I~iW~~~  386 (388)
T d1erja_         363 SLGPEYNVFATGSGDC-KARIWKYK  386 (388)
T ss_dssp             TTCTTCEEEEEEETTS-EEEEEEEE
T ss_pred             CCCCCCCEEEEEECCC-EEEEEEEE
T ss_conf             2589999999991899-79997621

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=291.90  Aligned_cols=281  Identities=12%  Similarity=0.199  Sum_probs=169.2

Q ss_pred             CCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEE---E-EECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf             97589999801999889999099809999889850222---4-5313346527999945999899981999479999207
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS---V-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~---~-~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~  299 (809)
                      ...|++++|+|+|+ +|++|+ ||.|++||+.+.....   . ...+|.+.|.+++|+|++++|++++.|+.|++|++..
T Consensus        51 ~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~  128 (337)
T d1gxra_          51 GEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA  128 (337)
T ss_dssp             SSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred             CCCEEEEEECCCCC-EEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCC
T ss_conf             99289999989999-999997-9988997736776331168764048899689999867998898861233211111111


Q ss_pred             CCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEE
Q ss_conf             99995027943588999966999039979999978997899996305432120223577987520101433026841277
Q 003579          300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  379 (809)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  379 (809)
                      ..  .+......+|...+.++.|++++..+++++.|+.+++|++.+......                            
T Consensus       129 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~----------------------------  178 (337)
T d1gxra_         129 PT--PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ----------------------------  178 (337)
T ss_dssp             C----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----------------------------
T ss_pred             CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------------------
T ss_conf             11--111111111111111111111111111111111111111111111111----------------------------


Q ss_pred             EECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf             51231146663038964299609999901246321542069999997599999689989999937992999978778300
Q 003579          380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR  459 (809)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~  459 (809)
                                                              ...+...+.+++++++++.+++++.+|.+.+|++.++...
T Consensus       179 ----------------------------------------~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~  218 (337)
T d1gxra_         179 ----------------------------------------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             ----------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ----------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             ----------------------------------------1111111110123444321122356655321111110000


Q ss_pred             EEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEE
Q ss_conf             26607552245675564799999189989999957670999977998534534418772799992079899999499929
Q 003579          460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI  539 (809)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I  539 (809)
                      ..+         .|...|.+++|+|+++++++++.|+.+++|++.+++......+...+.+++|+|+++++++++.|+.|
T Consensus       219 ~~~---------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i  289 (337)
T d1gxra_         219 QQH---------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL  289 (337)
T ss_dssp             EEE---------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCC---------CCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEE
T ss_conf             024---------66661579997153030000002564211111111100001245654169998999999999489969


Q ss_pred             EEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf             99995788589997249998106998789979999918990999986
Q 003579          540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       540 ~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~  586 (809)
                      ++||..+++.+..+. |.+.|++++|+|++++|++++.|++|++||+
T Consensus       290 ~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         290 NAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEECCCCCEEEECC-CCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf             999899997999926-9998799999279999999908996999977

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=289.48  Aligned_cols=314  Identities=22%  Similarity=0.360  Sum_probs=204.3

Q ss_pred             EECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECC
Q ss_conf             96899916999828999789999859998999996799499999008907999941699758999980199988999909
Q 003579          166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (809)
Q Consensus       166 wd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~  245 (809)
                      |.. .....+++++|.++|++++|+|++++|++|+.||.|++||+.+++.+.++..+ .+.|.+++|++++. +++++..
T Consensus         3 w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h-~~~V~~~~~~~~~~-~~~~~~~   79 (317)
T d1vyhc1           3 WIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGK-LLASCSA   79 (317)
T ss_dssp             CCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSS-EEEEEET
T ss_pred             CCC-CCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCCEEEEEEECCCC-CCCCCCC
T ss_conf             689-89844898588887689999389899999938992999989999799999578-88677776301111-0111111


Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECC
Q ss_conf             98099998898502224531334652799994599989998199947999920799995027943588999966999039
Q 003579          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (809)
Q Consensus       246 dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (809)
                      ++.+..|+....+....+. +|...+.++.+++++..+++++.|+.+++|++...    .....+.+|...+.++.|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  154 (317)
T d1vyhc1          80 DMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQD  154 (317)
T ss_dssp             TSCCCEEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTT
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCC----EEEEEECCCCCCCEEEECCCC
T ss_conf             1110111001111111100-00000000001699855776526752357511443----034687167776300001667


Q ss_pred             CCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf             97999997899789999630543212022357798752010143302684127751231146663038964299609999
Q 003579          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (809)
Q Consensus       326 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  405 (809)
                      +.++++++.|+.+++|+.....                                                          
T Consensus       155 ~~~l~~~~~d~~v~~~~~~~~~----------------------------------------------------------  176 (317)
T d1vyhc1         155 GTLIASCSNDQTVRVWVVATKE----------------------------------------------------------  176 (317)
T ss_dssp             SSEEEEEETTSCEEEEETTTCC----------------------------------------------------------
T ss_pred             CCEEEEEECCCEEEEEEECCCE----------------------------------------------------------
T ss_conf             9999999279829997512540----------------------------------------------------------


Q ss_pred             EEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCC
Q ss_conf             90124632154206999999759999968998999993799299997877830026607552245675564799999189
Q 003579          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (809)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  485 (809)
                                                                          ....+.        .|...+.++.++++
T Consensus       177 ----------------------------------------------------~~~~~~--------~~~~~i~~~~~~~~  196 (317)
T d1vyhc1         177 ----------------------------------------------------CKAELR--------EHRHVVECISWAPE  196 (317)
T ss_dssp             ----------------------------------------------------EEEEEC--------CCSSCEEEEEECCS
T ss_pred             ----------------------------------------------------EEEEEE--------CCCCCCEEEEEEEC
T ss_conf             ----------------------------------------------------347882--------47787337998632


Q ss_pred             CCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf             98999995767099997799853453441877279999207989999949992999995788589997249998106998
Q 003579          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF  565 (809)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~f  565 (809)
                      +.........                     ..........+.++++++.|+.|++||..+++++.++.+|...|.+++|
T Consensus       197 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (317)
T d1vyhc1         197 SSYSSISEAT---------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF  255 (317)
T ss_dssp             CGGGGGGGCC---------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             CCCCEEECCC---------------------CCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf             5641110345---------------------6303430258861475169978999888999688999688998799998


Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf             7899799999189909999869763788765276-3589997679983899973797499964
Q 003579          566 SEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       566 spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~i~~spdg~~lat~~~d~~~i~iW~  627 (809)
                      +|++++|++++.||.|++||+.+++++..+..|. +|++++|+|++++|++++.|+ .|++|+
T Consensus       256 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg-~i~iWd  317 (317)
T d1vyhc1         256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWE  317 (317)
T ss_dssp             CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS-EEEEEC
T ss_pred             CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC-EEEEEC
T ss_conf             79999999997989499999999919999928999889999949999999992899-499829

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=281.22  Aligned_cols=307  Identities=15%  Similarity=0.265  Sum_probs=247.4

Q ss_pred             EEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf             22697389434179991799988999995778099996899916999828999789999859998999996799499999
Q 003579          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (809)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd  209 (809)
                      ..++..|...+..+.|+|++  +.|++|+.||+|++||+.+++++.++.+|...|.+++++|++.+++++..++.+..|+
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVF--SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSS--SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CEEECCCCCCEEEEEECCCC--CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             48985888876899993898--9999993899299998999979999957888677776301111011111111101110


Q ss_pred             EECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCC
Q ss_conf             00890799994169975899998019998899990998099998898502224531334652799994599989998199
Q 003579          210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (809)
Q Consensus       210 ~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d  289 (809)
                      ....+....+..+ ...+.++.|++++. .+++++.|+.+.+||+++++....+. +|...+.++.|++++.++++++.|
T Consensus        88 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          88 FQGFECIRTMHGH-DHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             TTSSCEEECCCCC-SSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCCCCCCCCC-CCCCEEEECCCCCC-EEEEECCCCCEEEEECCCCEEEEEEC-CCCCCCEEEECCCCCCEEEEEECC
T ss_conf             0111111110000-00000000169985-57765267523575114430346871-677763000016679999999279


Q ss_pred             CCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHH
Q ss_conf             94799992079999502794358899996699903997999997899789999630543212022357798752010143
Q 003579          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (809)
Q Consensus       290 ~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (809)
                      +.+++|+....    .....+.+|...+.++.+.+++.........                                  
T Consensus       165 ~~v~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------------------------  206 (317)
T d1vyhc1         165 QTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEAT----------------------------------  206 (317)
T ss_dssp             SCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCC----------------------------------
T ss_pred             CEEEEEEECCC----EEEEEEECCCCCCEEEEEEECCCCCEEECCC----------------------------------
T ss_conf             82999751254----0347882477873379986325641110345----------------------------------


Q ss_pred             HHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf             30268412775123114666303896429960999990124632154206999999759999968998999993799299
Q 003579          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (809)
Q Consensus       370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~  449 (809)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (317)
T d1vyhc1         207 --------------------------------------------------------------------------------  206 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCC
Q ss_conf             997877830026607552245675564799999189989999957670999977998534534418-7727999920798
Q 003579          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG  528 (809)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~  528 (809)
                                                ..........+..+++++.|+.|++|+..+++++..+..+ ..+.+++++|++.
T Consensus       207 --------------------------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  260 (317)
T d1vyhc1         207 --------------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK  260 (317)
T ss_dssp             --------------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             --------------------------CCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf             --------------------------630343025886147516997899988899968899968899879999879999


Q ss_pred             EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf             999994999299999578858999724999810699878997999991899099998
Q 003579          529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       529 ~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd  585 (809)
                      +|++++.|+.|++||+.+++++.++.+|.+.|++++|+|++++|++++.|++|++||
T Consensus       261 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         261 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf             999997989499999999919999928999889999949999999992899499829

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-45  Score=271.68  Aligned_cols=292  Identities=17%  Similarity=0.357  Sum_probs=185.0

Q ss_pred             CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEE
Q ss_conf             16999828999789999859998999996799499999008907999941699758999980199988999909980999
Q 003579          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i  251 (809)
                      +..+++++|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..+ ...|.+++|+|++. ++++|+.|+.+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~-~~~v~~v~~~~~~~-~l~~~~~d~~i~~  123 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCAYAPSGN-YVACGGLDNICSI  123 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECS-CSCEEEEEECTTSS-EEEEEETTCCEEE
T ss_pred             EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC-CCCEEEEEEECCCE-EEEEECCCCEEEC
T ss_conf             652798887898889999899999999978995556310210257997246-53377567601211-4431013320101


Q ss_pred             EECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEE
Q ss_conf             98898502224531334652799994599989998199947999920799995027943588999966999039979999
Q 003579          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (809)
Q Consensus       252 wdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (809)
                      |+....                                           ...........+|.......... .+..+..
T Consensus       124 ~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (340)
T d1tbga_         124 YNLKTR-------------------------------------------EGNVRVSRELAGHTGYLSCCRFL-DDNQIVT  159 (340)
T ss_dssp             EESSSS-------------------------------------------CSCCCEEEEECCCSSCEEEEEEE-ETTEEEE
T ss_pred             CCCCCC-------------------------------------------CCCCCCCEECCCCCCCCCCCCCC-CCCCCCC
T ss_conf             332222-------------------------------------------12221110013542110111111-1111111


Q ss_pred             EECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEE
Q ss_conf             97899789999630543212022357798752010143302684127751231146663038964299609999901246
Q 003579          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (809)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (809)
                      ...+.....+...........                                                           
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  180 (340)
T d1tbga_         160 SSGDTTCALWDIETGQQTTTF-----------------------------------------------------------  180 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEE-----------------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCC-----------------------------------------------------------
T ss_conf             124454320012322111112-----------------------------------------------------------


Q ss_pred             ECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf             32154206999999759999968998999993799299997877830026607552245675564799999189989999
Q 003579          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (809)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  491 (809)
                               ......+....+.+.+.++++|..++.+.+||+.++.....+.        +|...|++++|+|+++++++
T Consensus       181 ---------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--------~h~~~i~~v~~~p~~~~l~s  243 (340)
T d1tbga_         181 ---------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT--------GHESDINAICFFPNGNAFAT  243 (340)
T ss_dssp             ---------ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEE
T ss_pred             ---------CCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEE--------CCCCCEEEEEECCCCCEEEE
T ss_conf             ---------3310157630012442126876057369999999994889995--------78898589999799899999


Q ss_pred             EECCCEEEEEECCCCCEEEEEECC---CCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf             957670999977998534534418---77279999207989999949992999995788589997249998106998789
Q 003579          492 AGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (809)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspd  568 (809)
                      ++.||.+++|++........+...   ..+.+++|+|++.++++++.|+.|++||+.+++++.++.+|.++|++++|+||
T Consensus       244 ~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d  323 (340)
T d1tbga_         244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECC
T ss_conf             96999699975212211111112244574589999899999999979798999999999398998489997899999089


Q ss_pred             CCEEEEEECCCEEEEEE
Q ss_conf             97999991899099998
Q 003579          569 GKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       569 g~~l~s~s~Dg~I~iwd  585 (809)
                      +++|++++.||+|++||
T Consensus       324 ~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         324 GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEECCCCEEEEEC
T ss_conf             99999990699799859

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=272.68  Aligned_cols=222  Identities=16%  Similarity=0.239  Sum_probs=150.2

Q ss_pred             CCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEE
Q ss_conf             045452799999--499899996799399998278865530022697389434179991799988999995778099996
Q 003579           90 SRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWN  167 (809)
Q Consensus        90 ~~h~~~V~~i~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd  167 (809)
                      .+|.+.|++++|  +|++|++++ |+.|++|++.+++.    +..+..+....                         .+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~----~~~~~~~~~~~-------------------------~~  108 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL----VARLSDDSAAN-------------------------KD  108 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE----EEEECC--------------------------------
T ss_pred             CCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCE----EEEECCCCCCC-------------------------CC
T ss_conf             79999689999999999999994-99489998136405----76631665443-------------------------24


Q ss_pred             CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCC
Q ss_conf             89991699982899978999985999899999679949999900890799994169975899998019998899990998
Q 003579          168 ISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (809)
Q Consensus       168 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg  247 (809)
                      . ..........|...|++++|+|++++|++|+.||.|++|+...++.+..+..+ ...|.++.|++++. .+++++.++
T Consensus       109 ~-~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~~~~~~~~~  185 (388)
T d1erja_         109 P-ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGD-KLVSGSGDR  185 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSS-EEEEEETTS
T ss_pred             C-CCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC-CCCCCCCCE
T ss_conf             4-32111014677898899998899980121344411112111111111111111-11111101111111-111222101


Q ss_pred             CEEEEECCCCEEEEEEECCCCCCEEEEEEE-CCCCEEEEECCCCCEEEEEEECCCCCCE---EEEECCCCCCCCEEEEEE
Q ss_conf             099998898502224531334652799994-5999899981999479999207999950---279435889999669990
Q 003579          248 VISIWNLEKRRLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPR---LLRFRSGHSAPPLCIRFY  323 (809)
Q Consensus       248 ~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~s~d~~i~iw~~~~~~~~~~---~~~~~~~h~~~v~~i~~~  323 (809)
                      .+++||..+........ .+.. ..++.+. +++.++++++.|+.+++|+.........   ......+|..+|.++.|+
T Consensus       186 ~i~~~d~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  263 (388)
T d1erja_         186 TVRIWDLRTGQCSLTLS-IEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT  263 (388)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred             EEEEEECCCCCCCCCCC-CCCC-CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEEC
T ss_conf             56541011111100001-2454-421123688787589973898199963455730001024433345778987899997


Q ss_pred             CCCCEEEEEECCCCEEEEEEEEC
Q ss_conf             39979999978997899996305
Q 003579          324 ANGRHILSAGQDRAFRLFSVIQD  346 (809)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~~~  346 (809)
                      |++++|++++.|+.+++|++...
T Consensus       264 ~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         264 RDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             TTSSEEEEEETTSEEEEEEC---
T ss_pred             CCCCEEEEEECCCCEEEEECCCC
T ss_conf             99999999978992898751577

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=0  Score=281.86  Aligned_cols=343  Identities=13%  Similarity=0.142  Sum_probs=223.4

Q ss_pred             CCCEEEEEECCCCCEEEEEECCCEEEEEEEECCE--EEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCE
Q ss_conf             9978999985999899999679949999900890--79999416997589999801999889999099809999889850
Q 003579          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~  258 (809)
                      ..+|+|++|+|++++||+|+.||.|++|+..+++  .+..+..| .++|.+++|+|+++ +|++++.|+.|++||+.++.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH-~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC-CCCEEEEEECCCCC-EEEEEECCCEEEEEEECCCC
T ss_conf             98838999989999999994889899998889978999995588-99888999979999-99999799939998620332


Q ss_pred             EEEEEE-CCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             222453-1334652799994599989998199947999920799995027943588999966999039979999978997
Q 003579          259 LQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (809)
Q Consensus       259 ~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~  337 (809)
                      ....+. .+|...|.++.|+|+++.+++++.|+.+++|+++.............+|...|.+++|+|++++|++++.|+.
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCE
T ss_conf             11001223221100011111112110000025763025442033433111001011122211111111111000134767


Q ss_pred             EEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEE
Q ss_conf             89999630543212022357798752010143302684127751231146663038964299609999901246321542
Q 003579          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (809)
Q Consensus       338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (809)
                      +++|+..............                                |.                .  .......+
T Consensus       165 v~v~~~~~~~~~~~~~~~~--------------------------------~~----------------~--~~~~~~~~  194 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTP--------------------------------WG----------------S--KMPFGELM  194 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBT--------------------------------TB----------------S--CCCTTCEE
T ss_pred             EEEEEECCCCCCCCCCCCC--------------------------------CC----------------C--CCCCEEEE
T ss_conf             9998401576431001221--------------------------------11----------------1--11110112


Q ss_pred             ECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf             06999999759999968998999993799299997877830026607552245675564799999189989999957670
Q 003579          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (809)
Q Consensus       418 ~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  497 (809)
                      .....+...+.+++|+|+|+++++++.||.|.+||+.++.....+.        .|..+|.+++|+++++++++ +.|+.
T Consensus       195 ~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~s~~fs~d~~~la~-g~d~~  265 (371)
T d1k8kc_         195 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA--------SETLPLLAVTFITESSLVAA-GHDCF  265 (371)
T ss_dssp             EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE--------CSSCCEEEEEEEETTEEEEE-ETTSS
T ss_pred             EECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEE--------CCCCCCEEEEECCCCCEEEE-ECCCC
T ss_conf             4404766747898751233210000147860588641012100000--------14665203654699979999-81992


Q ss_pred             EEEEECCCCCEEEEEECCCCEEE----EEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCC----
Q ss_conf             99997799853453441877279----9992079899999499929999957885899972499981069987899----
Q 003579          498 IKVWDFKGRDLKSRWEVGCSLVK----IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG----  569 (809)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~----~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg----  569 (809)
                      +++|..........+.....+..    ...+....+   ...+........ ..........|.+.|+++++.+.+    
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~H~~~I~~i~~~~~~~~~~  341 (371)
T d1k8kc_         266 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF---QNLDKKASSEGS-AAAGAGLDSLHKNSVSQISVLSGGKAKC  341 (371)
T ss_dssp             CEEEEEETTTTEEEECCCCCCC--------CHHHHH---HHCCCCC----------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEE---ECCCCEEEEECC-CCCCCEECCCCCCCEEEEEEECCCCCCE
T ss_conf             678776089862887202067654212462200168---506520587124-5566141255569889999948998656


Q ss_pred             CEEEEEECCCEEEEEECCC
Q ss_conf             7999991899099998697
Q 003579          570 KWLLSSGMDGSLRIWDVIL  588 (809)
Q Consensus       570 ~~l~s~s~Dg~I~iwd~~~  588 (809)
                      ..++|++.||.|++||+.+
T Consensus       342 ~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         342 SQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             SEEEEEETTSEEEEEEHHH
T ss_pred             EEEEEECCCCEEEEEECCC
T ss_conf             7999991899399996986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-45  Score=271.01  Aligned_cols=195  Identities=14%  Similarity=0.216  Sum_probs=120.9

Q ss_pred             CEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEE--EE
Q ss_conf             1799917999889999957780999968999169998289997899998599989999967994999990089079--99
Q 003579          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL--VT  218 (809)
Q Consensus       141 ~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~--~~  218 (809)
                      ...+++|++  +.++.+. ++.+.+|++.+++..+.+.+|...|++++|+|++++||+|+.||.|++||+..++..  ..
T Consensus        21 ~~~a~~~~g--~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~   97 (311)
T d1nr0a1          21 VVLGNTPAG--DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT   97 (311)
T ss_dssp             CCCEECTTS--SEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred             EEEEECCCC--CEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCC
T ss_conf             999996998--9999996-9999999999996617974788888999994899967225567367466310111100001


Q ss_pred             EECCCCCCEEEEEEECCCCCEEEEECC--CCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCC-EEEEECCCCCEEEE
Q ss_conf             941699758999980199988999909--980999988985022245313346527999945999-89998199947999
Q 003579          219 FTHSMRGAVTALAFSSDGQPLLASGAS--SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW  295 (809)
Q Consensus       219 ~~~~~~~~V~~l~fs~dg~~~lasg~~--dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~d~~i~iw  295 (809)
                      +.. |.++|.+++|+|+++ ++++++.  +..+.+|++++++....+. +|...|.+++|+|+++ .+++++.|+.|++|
T Consensus        98 ~~~-~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          98 IPV-FSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEC-SSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             CCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf             343-357543323331110-0011112211111111111111111111-1111111111121110120001122111111


Q ss_pred             EEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf             92079999502794358899996699903997999997899789999630
Q 003579          296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (809)
Q Consensus       296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~  345 (809)
                      +++..    +......+|..+|+++.++|+++++++++.|+.+++|+...
T Consensus       175 d~~~~----~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         175 EGPPF----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             ETTTB----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             11111----11111111111111123476422121111111110001244

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-45  Score=268.21  Aligned_cols=288  Identities=15%  Similarity=0.170  Sum_probs=131.4

Q ss_pred             CCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCC
Q ss_conf             75899998019998899990998099998898502224531334652799994599989998199947999920799995
Q 003579          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (809)
Q Consensus       225 ~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~  304 (809)
                      +.+..++++|+|+ .++.+. ++.|.+||+++......+. +|...|++++|+|++++|++++.|+.|++|++.....  
T Consensus        18 ~~~~~~a~~~~g~-~l~~~~-~~~v~i~~~~~~~~~~~~~-~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~--   92 (311)
T d1nr0a1          18 GTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH--   92 (311)
T ss_dssp             TCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC--
T ss_pred             CCEEEEEECCCCC-EEEEEE-CCEEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCC--
T ss_conf             8759999969989-999996-9999999999996617974-7888889999948999672255673674663101111--


Q ss_pred             EEEEECCCCCCCCEEEEEECCCCEEEEEECC--CCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEEC
Q ss_conf             0279435889999669990399799999789--97899996305432120223577987520101433026841277512
Q 003579          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (809)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (809)
                      .....+.+|..+|.+++|+++++++++++.+  +.+++|+....+....                               
T Consensus        93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~-------------------------------  141 (311)
T d1nr0a1          93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN-------------------------------  141 (311)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC-------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------------
T ss_conf             0000134335754332333111000111122111111111111111111-------------------------------


Q ss_pred             CCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCE-EEEEECCCCEEEEECCCCCEEEE
Q ss_conf             31146663038964299609999901246321542069999997599999689989-99993799299997877830026
Q 003579          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF-AVLGTAGGWIERFNLQSGISRGS  461 (809)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~-l~~g~~~g~i~i~~~~~~~~~~~  461 (809)
                                                           ...|...+++++|+|++++ +++|+.+|.|++|+++++.....
T Consensus       142 -------------------------------------l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~  184 (311)
T d1nr0a1         142 -------------------------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST  184 (311)
T ss_dssp             -------------------------------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE
T ss_pred             -------------------------------------CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -------------------------------------1111111111111211101200011221111111111111111


Q ss_pred             EECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEE
Q ss_conf             60755224567556479999918998999995767099997799853453441877279999207989999949992999
Q 003579          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL  541 (809)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i  541 (809)
                      +.        .|...|+++.++|+++++++++.|+.+++|+...+.....+....                         
T Consensus       185 ~~--------~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-------------------------  231 (311)
T d1nr0a1         185 FG--------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS-------------------------  231 (311)
T ss_dssp             EC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT-------------------------
T ss_pred             CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------
T ss_conf             11--------111111112347642212111111111000124464112221111-------------------------


Q ss_pred             EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC--EEEEEECCCCCEEEEEEEC
Q ss_conf             99578858999724999810699878997999991899099998697637887652763--5899976799838999737
Q 003579          542 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVD  619 (809)
Q Consensus       542 ~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~i~~spdg~~lat~~~d  619 (809)
                               ....+|.+.|++++|+|++++|++++.|+.|++||+.+++++..+..+..  ...+.+.+++++|++++.|
T Consensus       232 ---------~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~d  302 (311)
T d1nr0a1         232 ---------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN  302 (311)
T ss_dssp             ---------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred             ---------CCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECC
T ss_conf             ---------11100246532102478899999993799699999999969999979998633299999519999999899


Q ss_pred             CCEEEEEEC
Q ss_conf             974999644
Q 003579          620 QNGVYLWVN  628 (809)
Q Consensus       620 ~~~i~iW~~  628 (809)
                      | .|++|+.
T Consensus       303 G-~i~~wd~  310 (311)
T d1nr0a1         303 G-FINFVNP  310 (311)
T ss_dssp             C-CEEEEET
T ss_pred             C-EEEEEEC
T ss_conf             9-7999958

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-44  Score=263.12  Aligned_cols=340  Identities=17%  Similarity=0.264  Sum_probs=193.7

Q ss_pred             EEECCCCCCE-EEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEE
Q ss_conf             9982899978-999985999899999679949999900890799994169975899998019998899990998099998
Q 003579          175 YEFKGWGSSI-SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (809)
Q Consensus       175 ~~~~~~~~~I-~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd  253 (809)
                      .++++|...| +|+.+  ++++|++|+.||.|++||+.+++.+.++..| .++|++++|++++  +|++|+.||.|++|+
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H-~~~V~~l~~s~~~--~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGG--ILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECC-SSCEEEEEEETTT--EEEEEETTCCEEEEE
T ss_pred             EEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCC--EEEEEECCCCCCCCC
T ss_conf             8889837886999998--8999999918990999989999399999789-9988999986999--999996452443211


Q ss_pred             CCCCEEEEEEECC-CCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCC-CEEEE
Q ss_conf             8985022245313-346527999945999899981999479999207999950279435889999669990399-79999
Q 003579          254 LEKRRLQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILS  331 (809)
Q Consensus       254 l~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g-~~l~s  331 (809)
                      ....+........ +........+.+++..+++++.|+.+++|++.....    .... +...........+.. ..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS----VPDH-GEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC----------------CCCEEESCTTTCTTEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCE----ECCC-CCCCEECCCEECCCCCCCEEE
T ss_conf             11111111110011111111111112322045543888689998567730----0124-652000100000112340121


Q ss_pred             EECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEE
Q ss_conf             97899789999630543212022357798752010143302684127751231146663038964299609999901246
Q 003579          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (809)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  411 (809)
                      .        .                                                                      
T Consensus       156 ~--------~----------------------------------------------------------------------  157 (355)
T d1nexb2         156 V--------L----------------------------------------------------------------------  157 (355)
T ss_dssp             E--------E----------------------------------------------------------------------
T ss_pred             E--------E----------------------------------------------------------------------
T ss_conf             0--------1----------------------------------------------------------------------


Q ss_pred             ECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf             32154206999999759999968998999993799299997877830026607552245675564799999189989999
Q 003579          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (809)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  491 (809)
                               ..+...  .....++++.++.+..++.+.+|++.++.......        ++...+.++.+++++..+++
T Consensus       158 ---------~~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  218 (355)
T d1nexb2         158 ---------RGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS--------GHTDRIYSTIYDHERKRCIS  218 (355)
T ss_dssp             ---------ECCSSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEEETTTTEEEE
T ss_pred             ---------EECCCC--CCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEE--------CCCCCCCCCCCCCCCEEEEC
T ss_conf             ---------100222--10000256334421144204443013110001100--------01233211111121002101


Q ss_pred             EECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEE-EECCCC
Q ss_conf             957670999977998534534418-772799992079899999499929999957885899972499981069-987899
Q 003579          492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF-CFSEDG  569 (809)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i-~fspdg  569 (809)
                      ++.|+.|++|+..++..+..+..+ ..+.++.++  ++++++++.|+.|++||+.+....  +..|...+..+ .+++++
T Consensus       219 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~  294 (355)
T d1nexb2         219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSD  294 (355)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECS
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCCEE--CCCCCCCCEEEEEECCCC
T ss_conf             2456368763012211111111111111111232--100333201111111111111100--012468822999984999


Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEE-EEEC-CCEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             7999991899099998697637887-6527-635899976799838999737974999644
Q 003579          570 KWLLSSGMDGSLRIWDVILARQIDA-IHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       570 ~~l~s~s~Dg~I~iwd~~~~~~i~~-~~~~-~~v~~i~~spdg~~lat~~~d~~~i~iW~~  628 (809)
                      +++++++ |+.|++||+.+++++.. +..| .+|++++|+|+ .++++++.|| .++||..
T Consensus       295 ~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg-~~~l~~~  352 (355)
T d1nexb2         295 NILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDG-QSFLEIL  352 (355)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSS-CEEEEEE
T ss_pred             CEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCC-CEEEEEE
T ss_conf             8999980-9979999999997988884589998999998399-1999998989-0999999

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-43  Score=259.58  Aligned_cols=127  Identities=19%  Similarity=0.365  Sum_probs=63.5

Q ss_pred             EECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECC
Q ss_conf             96899916999828999789999859998999996799499999008907999941699758999980199988999909
Q 003579          166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (809)
Q Consensus       166 wd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~  245 (809)
                      |+..+.++...+++|.+.|.+ ++++++++|++|+.||.|++||+.+++.+.++..| .+.|.+++|+++   ++++++.
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-~~~V~~v~~~~~---~l~s~s~   75 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGVWSSQMRDN---IIISGST   75 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC-SSCEEEEEEETT---EEEEEET
T ss_pred             CCCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCC---CCCCCEE
T ss_conf             989988758898886875099-99978999999918990999989999799999488-999899994798---6321000


Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf             9809999889850222453133465279999459998999819994799992079
Q 003579          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       246 dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~  300 (809)
                      |+.+++|+........... .+...+......  ...+..+..|+.+.+|+....
T Consensus        76 D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~  127 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG  127 (342)
T ss_dssp             TSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred             CCCCCCCCCCCCCCEECCC-CCCEEEEEEECC--CCCCCCCCCCEEEEEEECCCC
T ss_conf             0011111111000000012-333047652024--652212344403787403556

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-44  Score=261.22  Aligned_cols=291  Identities=20%  Similarity=0.312  Sum_probs=225.3

Q ss_pred             EEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             02224531334652799994599989998199947999920799995027943588999966999039979999978997
Q 003579          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (809)
Q Consensus       258 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~  337 (809)
                      +..++++ +|.+.|++++|+|++++|++++.||.|++|++...    ..+..+.+|..+|.+++|+|++.++++++.|+.
T Consensus        46 ~~~~tL~-GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          46 RTRRTLR-GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT----EEEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC----EEEEEEECCCCCEEEEEEECCCEEEEEECCCCE
T ss_conf             6527988-87898889999899999999978995556310210----257997246533775676012114431013320


Q ss_pred             EEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEE
Q ss_conf             89999630543212022357798752010143302684127751231146663038964299609999901246321542
Q 003579          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (809)
Q Consensus       338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  417 (809)
                      +++|+............                                                               
T Consensus       121 i~~~~~~~~~~~~~~~~---------------------------------------------------------------  137 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSR---------------------------------------------------------------  137 (340)
T ss_dssp             EEEEESSSSCSCCCEEE---------------------------------------------------------------
T ss_pred             EECCCCCCCCCCCCCCE---------------------------------------------------------------
T ss_conf             10133222212221110---------------------------------------------------------------


Q ss_pred             ECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf             06999999759999968998999993799299997877830026607552245675564799999189989999957670
Q 003579          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (809)
Q Consensus       418 ~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  497 (809)
                       ....+ ...........+..+.....++....+............        .+...+....+.+.+.++++++.|+.
T Consensus       138 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         138 -ELAGH-TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT--------GHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             -EECCC-SSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             -ECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCEEEEEECCCCCCCEEEEEECCCE
T ss_conf             -01354-211011111111111111244543200123221111123--------31015763001244212687605736


Q ss_pred             EEEEECCCCCEEEEEECC-CCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEE
Q ss_conf             999977998534534418-772799992079899999499929999957885899972--49998106998789979999
Q 003579          498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLS  574 (809)
Q Consensus       498 i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~--~h~~~I~~i~fspdg~~l~s  574 (809)
                      +++||+.+++++..+..+ ..+.+++|+|++.++++++.|+.|++||+.....+..+.  .+...|++++|+|++++|++
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf             99999999948899957889858999979989999996999699975212211111112244574589999899999999


Q ss_pred             EECCCEEEEEECCCCCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf             9189909999869763788765276-3589997679983899973797499964
Q 003579          575 SGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (809)
Q Consensus       575 ~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~i~~spdg~~lat~~~d~~~i~iW~  627 (809)
                      ++.||.|++||+.+++++..+..|. +|++++|+|++.+|++++.|+ .|++|+
T Consensus       288 g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg-~v~iWd  340 (340)
T d1tbga_         288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS-FLKIWN  340 (340)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred             EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCC-EEEEEC
T ss_conf             97979899999999939899848999789999908999999990699-799859

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-45  Score=267.36  Aligned_cols=339  Identities=12%  Similarity=0.097  Sum_probs=221.5

Q ss_pred             CCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCE--EEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCC
Q ss_conf             97589999801999889999099809999889850--2224531334652799994599989998199947999920799
Q 003579          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (809)
Q Consensus       224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~  301 (809)
                      ..+|+|++|+|||+ +||+|+.+|.|++||+.+++  ....+. +|.++|.+++|+|++++|++++.|+.|++|+++...
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCC
T ss_conf             98838999989999-9999948898999988899789999955-889988899997999999999799939998620332


Q ss_pred             CCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEE
Q ss_conf             99502794358899996699903997999997899789999630543212022357798752010143302684127751
Q 003579          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (809)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (809)
                        ........+|...+.++.|+|+++.+++++.|+.+++|++.........                             
T Consensus        85 --~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~-----------------------------  133 (371)
T d1k8kc_          85 --WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-----------------------------  133 (371)
T ss_dssp             --EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-----------------------------
T ss_pred             --CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCC-----------------------------
T ss_conf             --1100122322110001111111211000002576302544203343311-----------------------------


Q ss_pred             CCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf             23114666303896429960999990124632154206999999759999968998999993799299997877830026
Q 003579          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (809)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~  461 (809)
                                                         ......+...+.+++|+|+++++++|+.||.+++|+.........
T Consensus       134 -----------------------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~  178 (371)
T d1k8kc_         134 -----------------------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER  178 (371)
T ss_dssp             -----------------------------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC
T ss_pred             -----------------------------------CCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCC
T ss_conf             -----------------------------------100101112221111111111100013476799984015764310


Q ss_pred             EECC----------CCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCCEE
Q ss_conf             6075----------52245675564799999189989999957670999977998534534418-772799992079899
Q 003579          462 YLDM----------SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLL  530 (809)
Q Consensus       462 ~~~~----------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~l  530 (809)
                      ....          .......|...|.+++|+|+++++++++.|+.|++||+.+++.+..+..+ .++.+++|++++.++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~l  258 (371)
T d1k8kc_         179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV  258 (371)
T ss_dssp             CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEE
T ss_conf             01221111111101124404766747898751233210000147860588641012100000146652036546999799


Q ss_pred             EEEECCCEEEEEECCCCEEEEEEECCCCCEEEE---EECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             999499929999957885899972499981069---98789979999918990999986976378876527635899976
Q 003579          531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDF---CFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLS  607 (809)
Q Consensus       531 a~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i---~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~i~~s  607 (809)
                      ++|. |+.+++|..........+.++.......   ..+....+   ...|..................|...|+++++.
T Consensus       259 a~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~  334 (371)
T d1k8kc_         259 AAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF---QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL  334 (371)
T ss_dssp             EEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH---HHCCCCC---------CCCSSSSSSCEEEEEEE
T ss_pred             EEEC-CCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEE---ECCCCEEEEECCCCCCCEECCCCCCCEEEEEEE
T ss_conf             9981-992678776089862887202067654212462200168---506520587124556614125556988999994


Q ss_pred             CCC----CEEEEEEECCCEEEEEECCCCCCCC
Q ss_conf             799----8389997379749996447556778
Q 003579          608 PNM----DVLATAHVDQNGVYLWVNRCMFSGD  635 (809)
Q Consensus       608 pdg----~~lat~~~d~~~i~iW~~~~~~~~~  635 (809)
                      +.+    ..++|++.|+ .|++|+++.+....
T Consensus       335 ~~~~~~~~~~~T~g~Dg-~v~iW~~~~~~~~~  365 (371)
T d1k8kc_         335 SGGKAKCSQFCTTGMDG-GMSIWDVRSLESAL  365 (371)
T ss_dssp             ESTTTSCSEEEEEETTS-EEEEEEHHHHHHHC
T ss_pred             CCCCCCEEEEEEECCCC-EEEEEECCCCHHHH
T ss_conf             89986567999991899-39999698684653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-43  Score=258.16  Aligned_cols=346  Identities=14%  Similarity=0.203  Sum_probs=256.7

Q ss_pred             EEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf             22697389434179991799988999995778099996899916999828999789999859998999996799499999
Q 003579          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (809)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd  209 (809)
                      ..+++.|...+.+| +++++  ++|++|+.||+|++||+.+++++.++.+|.++|++++|+|+ .+|++|+.||.|++|+
T Consensus         5 ~~tL~GH~~~vitc-~~~~~--~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           5 RTTLRGHMTSVITC-LQFED--NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEECCSSSCEEE-EEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CEEECCCCCCCEEE-EEECC--CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf             58889837886999-99889--99999918990999989999399999789998899998699-9999996452443211


Q ss_pred             EECCEEEEEEECCC-CCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECC
Q ss_conf             00890799994169-97589999801999889999099809999889850222453133465279999459998999819
Q 003579          210 VRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (809)
Q Consensus       210 ~~~~~~~~~~~~~~-~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~  288 (809)
                      ....+......... ........+.+++. .+++++.|+.|++||+.+..........+.  .......+.         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~---------  148 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHD--YPLVFHTPE---------  148 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------C--CCEEESCTT---------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCCCEEEEECCCCCEECCCCCCCE--ECCCEECCC---------
T ss_conf             11111111110011111111111112322-045543888689998567730012465200--010000011---------


Q ss_pred             CCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHH
Q ss_conf             99479999207999950279435889999669990399799999789978999963054321202235779875201014
Q 003579          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  368 (809)
Q Consensus       289 d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (809)
                                   ...........|...+.  .+.++++.++++..|+.+++|++...+.....                
T Consensus       149 -------------~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~----------------  197 (355)
T d1nexb2         149 -------------ENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL----------------  197 (355)
T ss_dssp             -------------TCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEE----------------
T ss_pred             -------------CCCCEEEEEEECCCCCC--CCCCCCCEEEEECCCCEEEEEECCCCCCEEEE----------------
T ss_conf             -------------23401210110022210--00025633442114420444301311000110----------------


Q ss_pred             HHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf             33026841277512311466630389642996099999012463215420699999975999996899899999379929
Q 003579          369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  448 (809)
Q Consensus       369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i  448 (809)
                                                                          ..+...+.++.++++++.+++++.+|.|
T Consensus       198 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i  225 (355)
T d1nexb2         198 ----------------------------------------------------SGHTDRIYSTIYDHERKRCISASMDTTI  225 (355)
T ss_dssp             ----------------------------------------------------CCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ----------------------------------------------------ECCCCCCCCCCCCCCCEEEECCCCCCEE
T ss_conf             ----------------------------------------------------0012332111111210021012456368


Q ss_pred             EEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCC
Q ss_conf             99978778300266075522456755647999991899899999576709999779985345344187727999920798
Q 003579          449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG  528 (809)
Q Consensus       449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~  528 (809)
                      ++|+..++.....+.        +|...|.+++++  ++++++++.||.|++||+.+.................+++++.
T Consensus       226 ~i~d~~~~~~~~~~~--------~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (355)
T d1nexb2         226 RIWDLENGELMYTLQ--------GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN  295 (355)
T ss_dssp             EEEETTTCCEEEEEC--------CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSS
T ss_pred             EEEECCCCCCCCCCC--------CCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCC
T ss_conf             763012211111111--------111111111232--1003332011111111111111000124688229999849998


Q ss_pred             EEEEEECCCEEEEEECCCCEEEE-EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf             99999499929999957885899-97249998106998789979999918990999986
Q 003579          529 LLATVADDLVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       529 ~la~~~~d~~I~i~d~~~~~~~~-~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~  586 (809)
                      ++++++ |+.|++||+++++++. .+.+|.++|.+++|+|+ ..+++++.||.+++|.+
T Consensus       296 ~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         296 ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEEEEE-CCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEEEEE
T ss_conf             999980-9979999999997988884589998999998399-19999989890999999

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-42  Score=250.59  Aligned_cols=195  Identities=21%  Similarity=0.329  Sum_probs=87.4

Q ss_pred             EEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf             22697389434179991799988999995778099996899916999828999789999859998999996799499999
Q 003579          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (809)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd  209 (809)
                      ...++.|...+.+ ++++++  ++|++|+.||+|++||+.++++++++.+|...|.+++++|+  ++++++.|+.+++|+
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g--~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCG--NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEET--TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             CEEECCCCCCEEE-EEEECC--CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCCCC
T ss_conf             8898886875099-999789--99999918990999989999799999488999899994798--632100000111111


Q ss_pred             EECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCC
Q ss_conf             00890799994169975899998019998899990998099998898502224531334652799994599989998199
Q 003579          210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (809)
Q Consensus       210 ~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d  289 (809)
                      ............. ...+......+.   .+..+..++.+.+|+..+++....+. .+...  ..........++.++.|
T Consensus        84 ~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          84 AETGECIHTLYGH-TSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLM-GHVAA--VRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             TTTTEEEEEECCC-SSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEE-CCSSC--EEEEEECSSCEEEEETT
T ss_pred             CCCCCCEECCCCC-CEEEEEEECCCC---CCCCCCCCEEEEEEECCCCCCEEEEE-CCCCC--CEEECCCCCEEEEECCC
T ss_conf             1100000001233-304765202465---22123444037874035563001110-01111--00000133302433589


Q ss_pred             CCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf             94799992079999502794358899996699903997999997899789999
Q 003579          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (809)
Q Consensus       290 ~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd  342 (809)
                      +.+++|+....    ..+....+|...+...  .+++.++++++.|+.+++|+
T Consensus       157 ~~i~~~d~~~~----~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d  203 (342)
T d2ovrb2         157 FMVKVWDPETE----TCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWD  203 (342)
T ss_dssp             SCEEEEEGGGT----EEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEECCCC----EEEEEECCCCCCCCCC--CCCCCEEEEEECCCEEEEEE
T ss_conf             86999525234----3667872754442100--68999999995899399952

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.3e-43  Score=256.55  Aligned_cols=163  Identities=13%  Similarity=0.164  Sum_probs=94.6

Q ss_pred             CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEE
Q ss_conf             91699982899978999985999899999679949999900890799994169975899998019998899990998099
Q 003579          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (809)
Q Consensus       171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~  250 (809)
                      |++.+.+.||..+|++++|+|++++|++|+.||.|++||+.+++.+..+...|...|++++|+|++. + ++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~-~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-L-FTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-E-EEEETTTEEE
T ss_pred             CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE-E-ECCCCEEEEE
T ss_conf             8613684888878289999799999999908992999999999688998378877489988403311-2-1023102688


Q ss_pred             EEECCCCEEE--EEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCE
Q ss_conf             9988985022--24531334652799994599989998199947999920799995027943588999966999039979
Q 003579          251 IWNLEKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (809)
Q Consensus       251 iwdl~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~  328 (809)
                      +|+.......  ......+...+.++.|++++..+++++ ++.+++|+..      +.....  ....+.+++|+|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~------~~~~~~--~~~~~~~~~~s~~~~~  150 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG------KLTEVP--ISYNSSCVALSNDKQF  150 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT------EEEEEE--CSSCEEEEEECTTSCE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC------CCCCCC--CCCCCCCCCCCCCCCC
T ss_conf             731677620111000111134432100112211111222-2222111111------111101--1112332211111111


Q ss_pred             EEEEECCCCEEEEEEE
Q ss_conf             9999789978999963
Q 003579          329 ILSAGQDRAFRLFSVI  344 (809)
Q Consensus       329 l~s~~~dg~i~iwd~~  344 (809)
                      +++++.|+.+++|++.
T Consensus       151 l~~g~~dg~i~~~d~~  166 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLS  166 (299)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             1111111111111111

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-42  Score=253.38  Aligned_cols=291  Identities=17%  Similarity=0.226  Sum_probs=156.1

Q ss_pred             EEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEE
Q ss_conf             07999941699758999980199988999909980999988985022245313346527999945999899981999479
Q 003579          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (809)
Q Consensus       214 ~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~  293 (809)
                      +..+.+.+ |.+.|++++|+|+++ +|++|+.||.|++||+++++....+..+|...|.+++|+|++. +++++.|+.++
T Consensus         3 ~~~~~~~G-H~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           3 SIDQVRYG-HNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLK   79 (299)
T ss_dssp             EEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred             CCCEECCC-CCCCCEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE-EECCCCEEEEE
T ss_conf             61368488-887828999979999-9999908992999999999688998378877489988403311-21023102688


Q ss_pred             EEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCC
Q ss_conf             99920799995027943588999966999039979999978997899996305432120223577987520101433026
Q 003579          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (809)
Q Consensus       294 iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (809)
                      +|+....... ........+...+.++.+++++..++.++ ++.+.+|+......   .                     
T Consensus        80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~---~---------------------  133 (299)
T d1nr0a2          80 VVPAGGSGVD-SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE---V---------------------  133 (299)
T ss_dssp             EECSSSSSSC-TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE---E---------------------
T ss_pred             EECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC---C---------------------
T ss_conf             7316776201-11000111134432100112211111222-22221111111111---0---------------------


Q ss_pred             CCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             84127751231146663038964299609999901246321542069999997599999689989999937992999978
Q 003579          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (809)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~  453 (809)
                                                                      .....+.+++++|+++++++|+.+|.+.+|++
T Consensus       134 ------------------------------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~  165 (299)
T d1nr0a2         134 ------------------------------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKL  165 (299)
T ss_dssp             ------------------------------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred             ------------------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ------------------------------------------------11112332211111111111111111111111


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEE
Q ss_conf             77830026607552245675564799999189989999957670999977998534534418772799992079899999
Q 003579          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV  533 (809)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~  533 (809)
                      .++.......       ..|...|++++++|+++++++++.|+.|++|++.++......                     
T Consensus       166 ~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~---------------------  217 (299)
T d1nr0a2         166 SGASVSEVKT-------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---------------------  217 (299)
T ss_dssp             ETTEEEEEEE-------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---------------------
T ss_pred             CCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------------
T ss_conf             1111111111-------111111111111111111111111111111111111111111---------------------


Q ss_pred             ECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE---ECC-CEEEEEECCC
Q ss_conf             499929999957885899972499981069987899799999189909999869763788765---276-3589997679
Q 003579          534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH---VDV-SITALSLSPN  609 (809)
Q Consensus       534 ~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~---~~~-~v~~i~~spd  609 (809)
                                       ..+.+|...|++++|+|++++|++++.|+.|++||+.++.......   ++. .+.++.| ++
T Consensus       218 -----------------~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~  279 (299)
T d1nr0a2         218 -----------------NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LN  279 (299)
T ss_dssp             -----------------CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EE
T ss_pred             -----------------CCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CC
T ss_conf             -----------------111111111111124666451388828997999989999731489834898896899997-79


Q ss_pred             CCEEEEEEECCCEEEEEEC
Q ss_conf             9838999737974999644
Q 003579          610 MDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       610 g~~lat~~~d~~~i~iW~~  628 (809)
                      +.+|++++.|+ .|++|++
T Consensus       280 ~~~l~s~s~D~-~i~iWdl  297 (299)
T d1nr0a2         280 ETTIVSAGQDS-NIKFWNV  297 (299)
T ss_dssp             TTEEEEEETTS-CEEEEEC
T ss_pred             CCEEEEEECCC-EEEEEEC
T ss_conf             89999992899-7999944

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-39  Score=237.17  Aligned_cols=289  Identities=12%  Similarity=0.173  Sum_probs=183.6

Q ss_pred             CEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC-CCCEEEEEEC--CCCEEEEEECCCCEEEEEEEEC
Q ss_conf             527999945999899981999479999207999950279435889-9996699903--9979999978997899996305
Q 003579          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYA--NGRHILSAGQDRAFRLFSVIQD  346 (809)
Q Consensus       270 ~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~--~g~~l~s~~~dg~i~iwd~~~~  346 (809)
                      .++++.|+|+++.++.++.+ .+.++.++.............+|. ..+++++|+|  ++.++++++.||+|++|++...
T Consensus        19 ~~t~l~~~~~~~~la~~~~~-~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGK-SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETT-EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECC-CEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCC
T ss_conf             84799998997999999699-87999976888876502899078999889999811799979999948997798540588


Q ss_pred             CCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCC
Q ss_conf             43212022357798752010143302684127751231146663038964299609999901246321542069999997
Q 003579          347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  426 (809)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  426 (809)
                      .....+...                                                            .......+...
T Consensus        98 ~~~~~~~~~------------------------------------------------------------~~~~~~~~~~~  117 (325)
T d1pgua1          98 KESNSVEVN------------------------------------------------------------VKSEFQVLAGP  117 (325)
T ss_dssp             GGGTEEEEE------------------------------------------------------------EEEEEECCSSC
T ss_pred             CCEEEEECC------------------------------------------------------------CCCCCCCCCCC
T ss_conf             621565100------------------------------------------------------------25411365673


Q ss_pred             EEEEEECCCCCEEEEEEC--CCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCE-EEEEECCCEEEEEEC
Q ss_conf             599999689989999937--99299997877830026607552245675564799999189989-999957670999977
Q 003579          427 VKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL-MISAGYHGDIKVWDF  503 (809)
Q Consensus       427 v~~v~~s~~g~~l~~g~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~dg~i~iwd~  503 (809)
                      +.+++|+++|+++++++.  ++.+.+|+..++.....+.        +|...|.+++|+|++.. +++++.|+.+++|+.
T Consensus       118 v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~  189 (325)
T d1pgua1         118 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS--------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG  189 (325)
T ss_dssp             EEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC--------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred             EEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEE--------ECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf             779998999882201001244047888502331100120--------012343211112343206888621112211112


Q ss_pred             CCCCEEEEEEC----CCCEEEEEEEEC-CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEC---CCCCEEEEE
Q ss_conf             99853453441----877279999207-9899999499929999957885899972499981069987---899799999
Q 003579          504 KGRDLKSRWEV----GCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS---EDGKWLLSS  575 (809)
Q Consensus       504 ~~~~~~~~~~~----~~~i~~~~~s~~-~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fs---pdg~~l~s~  575 (809)
                      ...+.......    ...+.+++|+|+ +.++++++.|+.|++||+++++.+..+.+|..++..+.|+   ||+++|+++
T Consensus       190 ~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~  269 (325)
T d1pgua1         190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATV  269 (325)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEE
T ss_pred             CCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf             21100000000157777527763034531000011233210134300122211111111111110000003689999999


Q ss_pred             ECCCEEEEEECCCCCEEEEEEECCC---EEEEEECCC-CCEEEEEEECCCEEEEEEC
Q ss_conf             1899099998697637887652763---589997679-9838999737974999644
Q 003579          576 GMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPN-MDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       576 s~Dg~I~iwd~~~~~~i~~~~~~~~---v~~i~~spd-g~~lat~~~d~~~i~iW~~  628 (809)
                      +.|+.|++||+.+++++..+..+..   +..+++.+. +.+|++++.|+ .|++|++
T Consensus       270 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-~i~vwdl  325 (325)
T d1pgua1         270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG-TLNFYEL  325 (325)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS-CEEEEET
T ss_pred             ECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCC-EEEEEEC
T ss_conf             5899399999999978899995487406769999988999999997999-9999979

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-39  Score=236.49  Aligned_cols=284  Identities=18%  Similarity=0.233  Sum_probs=173.3

Q ss_pred             CEEEEEECCCCCEEEEEECCC-EEEEEEEECC--EEEEEEECCCCCCEEEEEEEC--CCCCEEEEECCCCCEEEEECCCC
Q ss_conf             789999859998999996799-4999990089--079999416997589999801--99988999909980999988985
Q 003579          183 SISSCVSSPALDVVAVGCSDG-KIHVHNVRYD--EELVTFTHSMRGAVTALAFSS--DGQPLLASGASSGVISIWNLEKR  257 (809)
Q Consensus       183 ~I~~l~~sp~~~~la~g~~dg-~i~iwd~~~~--~~~~~~~~~~~~~V~~l~fs~--dg~~~lasg~~dg~I~iwdl~~~  257 (809)
                      .+++++|+|+++.+++++.+. .++.|+....  ..+..+..|+...|++++|+|  ++. ++++|+.||.|++||+..+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~-~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCC-EEEEEECCCCEEEEEECCC
T ss_conf             847999989979999996998799997688887650289907899988999981179997-9999948997798540588


Q ss_pred             EEEEEEE-------CCCCCCEEEEEEECCCCEEEEECC--CCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCE
Q ss_conf             0222453-------133465279999459998999819--9947999920799995027943588999966999039979
Q 003579          258 RLQSVIR-------EAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (809)
Q Consensus       258 ~~~~~~~-------~~h~~~v~~l~~~~~~~~l~s~s~--d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~  328 (809)
                      +....+.       ..|.++|.+++|++++..+++++.  ++.+++|+.+..    +.+..+.+|...+.++.|++++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG----NSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC----CEEEECCSCSSCEEEEEECSSSSC
T ss_pred             CCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCC----CCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             6215651002541136567377999899988220100124404788850233----110012001234321111234320


Q ss_pred             -EEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf             -9999789978999963054321202235779875201014330268412775123114666303896429960999990
Q 003579          329 -ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (809)
Q Consensus       329 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (809)
                       +++++.|+.+++|+....+.                                                           
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~-----------------------------------------------------------  194 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKF-----------------------------------------------------------  194 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEE-----------------------------------------------------------
T ss_pred             EEEEEECCCCCCCCCCCCCCC-----------------------------------------------------------
T ss_conf             688862111221111221100-----------------------------------------------------------


Q ss_pred             EEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCC-C
Q ss_conf             124632154206999999759999968998999993799299997877830026607552245675564799999189-9
Q 003579          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-N  486 (809)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~  486 (809)
                                                                         ......     ...|...|.+++|+|+ +
T Consensus       195 ---------------------------------------------------~~~~~~-----~~~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         195 ---------------------------------------------------SASDRT-----HHKQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             ---------------------------------------------------EEEECS-----SSCTTCCEEEEEECSTTC
T ss_pred             ---------------------------------------------------CEECCC-----CCCCCCCCEEEEECCCCC
T ss_conf             ---------------------------------------------------000000-----157777527763034531


Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEE---ECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCE--
Q ss_conf             89999957670999977998534534418-772799992---079899999499929999957885899972499981--
Q 003579          487 TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH---RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI--  560 (809)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s---~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I--  560 (809)
                      .++++++.|+.|++||..+++.+..+..+ .++..+.|+   +++.+|++++.|+.|++||++++++++.+..|...+  
T Consensus       219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~  298 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN  298 (325)
T ss_dssp             CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred             EECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCC
T ss_conf             00001123321013430012221111111111111000000368999999958993999999999788999954874067


Q ss_pred             EEEEECCC-CCEEEEEECCCEEEEEEC
Q ss_conf             06998789-979999918990999986
Q 003579          561 TDFCFSED-GKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       561 ~~i~fspd-g~~l~s~s~Dg~I~iwd~  586 (809)
                      ..+++.+. +.+|++++.||.|++||+
T Consensus       299 ~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         299 QQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf             699999889999999979999999979

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-37  Score=223.54  Aligned_cols=164  Identities=19%  Similarity=0.245  Sum_probs=100.0

Q ss_pred             CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC---EEE
Q ss_conf             99975999996899899999379929999787783002660755224567556479999918998999995767---099
Q 003579          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIK  499 (809)
Q Consensus       423 ~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg---~i~  499 (809)
                      +...+.+++++|++ ++++|+.||.|++||+.++.....+...  ..+.+|...|.+++|+|++++|++++.|+   .|+
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~  259 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  259 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEE
T ss_conf             89867899978999-8999938982999860233211000011--11124256387700466532011242898842100


Q ss_pred             EEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf             99779985345344187727999920798999994999299999578858999724999810699878997999991899
Q 003579          500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (809)
Q Consensus       500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg  579 (809)
                      +||+.+++.+..+....                            ........+.||.+.|++++|+||+++|+|++.|+
T Consensus       260 lwd~~~g~~~~~l~~~~----------------------------~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~  311 (393)
T d1sq9a_         260 LYETEFGERIGSLSVPT----------------------------HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  311 (393)
T ss_dssp             EEETTTCCEEEEECBC------------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ECCCCCCEEEEEECCCC----------------------------CCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCC
T ss_conf             10353213444311566----------------------------66431023202358666001389888069877999


Q ss_pred             EEEEEECCCCCEEEEEEECCC-E----EEEEECCCCCEEEEEE
Q ss_conf             099998697637887652763-5----8999767998389997
Q 003579          580 SLRIWDVILARQIDAIHVDVS-I----TALSLSPNMDVLATAH  617 (809)
Q Consensus       580 ~I~iwd~~~~~~i~~~~~~~~-v----~~i~~spdg~~lat~~  617 (809)
                      +|++||+.+++++..+..|.. |    ..++|+|++..+++++
T Consensus       312 ~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECC
T ss_conf             8999999999799999886876137734899999999999831

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-38  Score=226.62  Aligned_cols=38  Identities=18%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             EECCCCCCEEEEEEECCEEEEEECCCCEEEEECCCCCC
Q ss_conf             97045452799999499899996799399998278865
Q 003579           88 TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEE  125 (809)
Q Consensus        88 ~~~~h~~~V~~i~~~g~~l~s~~~dg~i~vWd~~~~~~  125 (809)
                      ..++|.+.|.++++.+++++|++.|++|++||..+.+.
T Consensus         9 ~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~   46 (393)
T d1sq9a_           9 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN   46 (393)
T ss_dssp             ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT
T ss_pred             CCCCCCCCCEEEEEECCEEEEEECCCEEEEEECCCCCC
T ss_conf             08763671279999699999997999699878987887

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-37  Score=224.41  Aligned_cols=315  Identities=13%  Similarity=0.093  Sum_probs=192.5

Q ss_pred             CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEE--CCCCCCEEEEEEECCCCCEEEEECCCCCE
Q ss_conf             1699982899978999985999899999679949999900890799994--16997589999801999889999099809
Q 003579          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSDGQPLLASGASSGVI  249 (809)
Q Consensus       172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~V~~l~fs~dg~~~lasg~~dg~I  249 (809)
                      +.+...++|...|++++|+|++++||+|+.||+|++||+..+.....+.  ..|.++|.+++|++++..++++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf             75976889989788899958999999997999299997569986368988558999889999958999789981265311


Q ss_pred             EEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCC--CCCEEEEEECCCC
Q ss_conf             99988985022245313346527999945999899981999479999207999950279435889--9996699903997
Q 003579          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS--APPLCIRFYANGR  327 (809)
Q Consensus       250 ~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~--~~v~~i~~~~~g~  327 (809)
                      ++|++............+........+.++...+++++.|+.+++|++...............+.  .......+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf             45420443200000111111111111111111111101222111020234443302300024300120000010001687


Q ss_pred             EEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf             99999789978999963054321202235779875201014330268412775123114666303896429960999990
Q 003579          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (809)
Q Consensus       328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  407 (809)
                      .+++++.|+.+++|++..                                                              
T Consensus       162 ~~~~~~~d~~i~~~~~~~--------------------------------------------------------------  179 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPL--------------------------------------------------------------  179 (342)
T ss_dssp             EEEEEESTTEEEEEESSC--------------------------------------------------------------
T ss_pred             CEEEECCCCCEEEEECCC--------------------------------------------------------------
T ss_conf             024651798478876056--------------------------------------------------------------


Q ss_pred             EEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEC-CCC
Q ss_conf             1246321542069999997599999689989999937992999978778300266075522456755647999991-899
Q 003579          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD-STN  486 (809)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~-~~~  486 (809)
                                                                      .........     ...+...+.+..+. .++
T Consensus       180 ------------------------------------------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         180 ------------------------------------------------CEDDNGTIE-----ESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             ------------------------------------------------CTTCCCEEE-----ECSCSSCEEEEEECSGGG
T ss_pred             ------------------------------------------------CCCCCEEEE-----ECCCCCCEEEEEEECCCC
T ss_conf             ------------------------------------------------763411121-----025422101467636999


Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEC
Q ss_conf             89999957670999977998534534418772799992079899999499929999957885899972499981069987
Q 003579          487 TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS  566 (809)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fs  566 (809)
                      ..+++++.||.+.+|++.............   .                     +  ...+......+|...|++++|+
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~---~---------------------~--~~~~~~~~~~~~~~~v~~l~~s  260 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRF---A---------------------F--RCHRLNLKDTNLAYPVNSIEFS  260 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCE---E---------------------E--ECCCCCTTCCSSCCCEEEEEEC
T ss_pred             CEEEEECCCCEEEEEEECCCCCEEECCCCC---E---------------------E--EEEEECCCCCCCCCCCEEEEEC
T ss_conf             878865489959999805986401112351---2---------------------5--6555314777623543159966


Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             89979999918990999986976378876527635899976799838999737974999644
Q 003579          567 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       567 pdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~i~~spdg~~lat~~~d~~~i~iW~~  628 (809)
                      |++++|++|+.||.|++||+.+++.+..+..+.....++|+|+|++|++++.|+ .+++|..
T Consensus       261 p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd-~~~~~~~  321 (342)
T d1yfqa_         261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD-TFKTNAA  321 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT-HHHHCSS
T ss_pred             CCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCC-CEEEEEE
T ss_conf             984479998799989999999894988705899987999994799999999199-2788301

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-38  Score=227.39  Aligned_cols=305  Identities=11%  Similarity=0.116  Sum_probs=198.0

Q ss_pred             EECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEE---EEECCCCCCEEEEEECCCC-CEEEEEECCCEEEEE
Q ss_conf             973894341799917999889999957780999968999169---9982899978999985999-899999679949999
Q 003579          133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKL---YEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVH  208 (809)
Q Consensus       133 ~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~---~~~~~~~~~I~~l~~sp~~-~~la~g~~dg~i~iw  208 (809)
                      .+.|...+..+.|+|++  ++|++|+.||+|++||+.++...   ....+|..+|++++|+|++ .++++|+.||.|++|
T Consensus         7 ~~~h~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             SSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             CCCCCCCEEEEEEECCC--CEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEE
T ss_conf             88998978889995899--9999997999299997569986368988558999889999958999789981265311454


Q ss_pred             EEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEEC---C--CCCCEEEEEEECCCCEE
Q ss_conf             900890799994169975899998019998899990998099998898502224531---3--34652799994599989
Q 003579          209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE---A--HDNAIISLHFFANEPVL  283 (809)
Q Consensus       209 d~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~---~--h~~~v~~l~~~~~~~~l  283 (809)
                      ++...........++........+.++.. .+++++.++.+++||++..........   .  .........+.+.+..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCE
T ss_conf             20443200000111111111111111111-11110122211102023444330230002430012000001000168702


Q ss_pred             EEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHH
Q ss_conf             99819994799992079999502794358899996699903-99799999789978999963054321202235779875
Q 003579          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (809)
Q Consensus       284 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  362 (809)
                      ++++.|+.+++|++........... ...+.....+..+.+ ++..+++++.||.+.+|+.............       
T Consensus       164 ~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~-------  235 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR-------  235 (342)
T ss_dssp             EEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC-------
T ss_pred             EEECCCCCEEEEECCCCCCCCEEEE-ECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCC-------
T ss_conf             4651798478876056763411121-02542210146763699987886548995999980598640111235-------


Q ss_pred             HCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf             20101433026841277512311466630389642996099999012463215420699999975999996899899999
Q 003579          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (809)
Q Consensus       363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g  442 (809)
                                                                                       ..             
T Consensus       236 -----------------------------------------------------------------~~-------------  237 (342)
T d1yfqa_         236 -----------------------------------------------------------------FA-------------  237 (342)
T ss_dssp             -----------------------------------------------------------------EE-------------
T ss_pred             -----------------------------------------------------------------CE-------------
T ss_conf             -----------------------------------------------------------------12-------------


Q ss_pred             ECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             37992999978778300266075522456755647999991899899999576709999779985345344187727999
Q 003579          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV  522 (809)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~  522 (809)
                              +....          .......|...+++++|+|++++|++++.||.|++||+.+++.+..+........++
T Consensus       238 --------~~~~~----------~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~  299 (342)
T d1yfqa_         238 --------FRCHR----------LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK  299 (342)
T ss_dssp             --------EECCC----------CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred             --------EEEEE----------ECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEE
T ss_conf             --------56555----------314777623543159966984479998799989999999894988705899987999


Q ss_pred             EEECCCEEEEEECCCEEEEEEC
Q ss_conf             9207989999949992999995
Q 003579          523 YHRVNGLLATVADDLVIRLFDV  544 (809)
Q Consensus       523 ~s~~~~~la~~~~d~~I~i~d~  544 (809)
                      ++++++++++++.|..+++|..
T Consensus       300 ~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         300 IACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEECSSEEEEEEECTHHHHCSS
T ss_pred             EEECCCEEEEEECCCCEEEEEE
T ss_conf             9947999999991992788301

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-36  Score=218.78  Aligned_cols=282  Identities=14%  Similarity=0.165  Sum_probs=191.2

Q ss_pred             CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEE
Q ss_conf             91699982899978999985999899999679949999900890799994169975899998019998899990998099
Q 003579          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (809)
Q Consensus       171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~  250 (809)
                      .++++++++|..+|++++|+|    |++|+.||+|++||+.++.      ..|...|.++++++++.  +++++.|+.++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~~~--~~s~s~D~~v~   70 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKAQE--YSSISWDDTLK   70 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCSTTC--CEEEETTTEEE
T ss_pred             CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCCC------CCCCCCEEEEEECCCCE--EEEEEECCCCC
T ss_conf             603499988798649999895----7898489919999899988------88778789999659972--89886101222


Q ss_pred             EEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEE
Q ss_conf             99889850222453133465279999459998999819994799992079999502794358899996699903997999
Q 003579          251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (809)
Q Consensus       251 iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~  330 (809)
                      +|++...+        ....+..+.+.+++..++++. ++.+.+|+....    ........+ .  ...++++++..++
T Consensus        71 ~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~-~--~~~~~~~~~~~~~  134 (287)
T d1pgua2          71 VNGITKHE--------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTG----DIIKSVRLN-S--PGSAVSLSQNYVA  134 (287)
T ss_dssp             ETTEEEEE--------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTC----CEEEEEECS-S--CEEEEEECSSEEE
T ss_pred             CCCCCCCC--------CCCCEEEEEECCCCCEEEEEE-CCCCEEEECCCE----EEEEECCCC-C--EEEEEECCCCCEE
T ss_conf             11111111--------122101466416785699960-332100001100----354310122-2--0356521475111


Q ss_pred             EEECCC-CEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf             997899-7899996305432120223577987520101433026841277512311466630389642996099999012
Q 003579          331 SAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (809)
Q Consensus       331 s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (809)
                      +++.++ .+++|++........                                                          
T Consensus       135 v~~~~~~~v~~~~~~~~~~~~~----------------------------------------------------------  156 (287)
T d1pgua2         135 VGLEEGNTIQVFKLSDLEVSFD----------------------------------------------------------  156 (287)
T ss_dssp             EEETTTSCEEEEETTEEEEEEE----------------------------------------------------------
T ss_pred             EECCCCCEEEEEECCCCCEEEE----------------------------------------------------------
T ss_conf             0002210002100012210001----------------------------------------------------------


Q ss_pred             EEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf             46321542069999997599999689989999937992999978778300266075522456755647999991899899
Q 003579          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (809)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  489 (809)
                               ....+...+++++|+|++.++++|+.+|.|++|++.++.......       ..|...|.+++|+|.+...
T Consensus       157 ---------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         157 ---------LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW-------AFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             ---------CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS-------CCCSSCEEEEEECCCC---
T ss_pred             ---------EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-------CCCCCCCCEEEECCCCCCC
T ss_conf             ---------210247853699951676521101111110000002332110001-------1111111000001365410


Q ss_pred             EEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCC-CEEEEEEECCCCCEEEEEECCC
Q ss_conf             999576709999779985345344187727999920798999994999299999578-8589997249998106998789
Q 003579          490 ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSED  568 (809)
Q Consensus       490 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~-~~~~~~~~~h~~~I~~i~fspd  568 (809)
                      ..                               +.+++.++++++.|+.|++||+++ .+.+..+.+|.+.|++++|+|+
T Consensus       221 ~~-------------------------------~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         221 NE-------------------------------EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  269 (287)
T ss_dssp             ----------------------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             CC-------------------------------CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf             01-------------------------------26788702766499959998889997589992787898589999899


Q ss_pred             CCEEEEEECCCEEEEEEC
Q ss_conf             979999918990999986
Q 003579          569 GKWLLSSGMDGSLRIWDV  586 (809)
Q Consensus       569 g~~l~s~s~Dg~I~iwd~  586 (809)
                      + .|++++.|++|++|++
T Consensus       270 ~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         270 S-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             T-EEEEEETTSCEEEEEE
T ss_pred             C-EEEEEECCCEEEEEEE
T ss_conf             9-8999979992999997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.4e-36  Score=219.57  Aligned_cols=367  Identities=9%  Similarity=-0.019  Sum_probs=257.0

Q ss_pred             EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEE--EEEEEC--CCCCCEE
Q ss_conf             999995778099996899916999828999789999859998999996799499999008907--999941--6997589
Q 003579          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE--LVTFTH--SMRGAVT  228 (809)
Q Consensus       153 ~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~--~~~~~V~  228 (809)
                      .+++.+.+|+|.+||..+++++..+..+ ..+..++|||||+++++++.||.+.+||+.+++.  ...+..  .+.+.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEE
T ss_conf             9999769997999989998399997379-971379988999999998289997899810898128899844889877698


Q ss_pred             EEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEEC----------CCCCCEEEEEEECCCCEE-EEECCCCCEEEEEE
Q ss_conf             9998019998899990998099998898502224531----------334652799994599989-99819994799992
Q 003579          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE----------AHDNAIISLHFFANEPVL-MSASADNSIKMWIF  297 (809)
Q Consensus       229 ~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~----------~h~~~v~~l~~~~~~~~l-~s~s~d~~i~iw~~  297 (809)
                      +..|+|||+.+++++..++.|++||..+++.+..+..          .+......+.+++++..+ ++...++.+.+|+.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf             43218888889998178982799907655422540247764352201688850589987899989999816882999984


Q ss_pred             ECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCC-CEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCE
Q ss_conf             079999502794358899996699903997999997899-7899996305432120223577987520101433026841
Q 003579          298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (809)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (809)
                      ....  ...+.. -.+...+..+.|+|+|+++++++.++ .+.+++.........+..+.                    
T Consensus       193 ~~~~--~~~~~~-i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~--------------------  249 (432)
T d1qksa2         193 TDLN--NLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG--------------------  249 (432)
T ss_dssp             TCSS--EEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS--------------------
T ss_pred             CCCC--CCEEEE-ECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCC--------------------
T ss_conf             3787--522799-83367542653889887999951666367776144526888721486--------------------


Q ss_pred             EEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCC
Q ss_conf             2775123114666303896429960999990124632154206999999759999968998999993-799299997877
Q 003579          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQS  455 (809)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~-~~g~i~i~~~~~  455 (809)
                                                                 ...+............+....... .++.+.+|....
T Consensus       250 -------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         250 -------------------------------------------QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             -------------------------------------------SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             -------------------------------------------CCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCC
T ss_conf             -------------------------------------------2245676641014898831021356883587624566


Q ss_pred             CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEEC
Q ss_conf             83002660755224567556479999918998999995767099997799853453441877279999207989999949
Q 003579          456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  535 (809)
Q Consensus       456 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~  535 (809)
                      ...            ..|...+....+.+++..+++++.+...++|.........     .....+++ ||++.+++++.
T Consensus       287 ~~~------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~-----~~~~sv~v-pDg~~la~~s~  348 (432)
T d1qksa2         287 EGH------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA-----EISGSVAV-FDIKAMTGDGS  348 (432)
T ss_dssp             TTC------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH-----HHHTCEEE-EEGGGCCCSSS
T ss_pred             CCC------------CCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCC-----CEEEEEEE-EECHHHCCCCC
T ss_conf             555------------4656577799886899768887268864102112678887-----70359999-96246104556


Q ss_pred             CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCEEEEEEECCCEEEEEECCCC
Q ss_conf             99299999578858999724999810699878997999991-----8990999986976378876527635899976799
Q 003579          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-----MDGSLRIWDVILARQIDAIHVDVSITALSLSPNM  610 (809)
Q Consensus       536 d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s-----~Dg~I~iwd~~~~~~i~~~~~~~~v~~i~~spdg  610 (809)
                      |+.+++|++.++.   .+..|...+..++|||||++++.+.     .++.|+|||..++++...+....     .++|+|
T Consensus       349 d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~-----~~tp~G  420 (432)
T d1qksa2         349 DPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER-----LVTPTG  420 (432)
T ss_dssp             CCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEE
T ss_pred             CCCEEECCCCCCC---CCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCCC-----CCCCCE
T ss_conf             7844863343444---45789986897679899999999970488888868999999955886846888-----408970


Q ss_pred             CE
Q ss_conf             83
Q 003579          611 DV  612 (809)
Q Consensus       611 ~~  612 (809)
                      .|
T Consensus       421 ~~  422 (432)
T d1qksa2         421 KF  422 (432)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             67

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-35  Score=209.73  Aligned_cols=109  Identities=24%  Similarity=0.343  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCC-----
Q ss_conf             755647999991899899999576709999779985345344187727999920798999994999299999578-----
Q 003579          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-----  546 (809)
Q Consensus       472 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~-----  546 (809)
                      ++...+..+.++  +..+++++.||.|++||+.+...+.......... ..+.+++.++++++.|+.|++||+..     
T Consensus       176 ~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  252 (293)
T d1p22a2         176 GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVSGAYDGKIKVWDLVAALDPR  252 (293)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE-EEEECCSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred             CCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEE-EECCCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf             554453221689--8758876589989998665561466521431000-0014541079998679979999888886444


Q ss_pred             ----CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf             ----858999724999810699878997999991899099998
Q 003579          547 ----LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (809)
Q Consensus       547 ----~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd  585 (809)
                          ...+..+.+|.+.|++++|+  +++|++++.|++|++||
T Consensus       253 ~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         253 APAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf             567754557845889988999971--99999992299899959

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=7.2e-35  Score=209.93  Aligned_cols=141  Identities=11%  Similarity=0.034  Sum_probs=104.3

Q ss_pred             EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEE--EC--CCCCCEE
Q ss_conf             9999957780999968999169998289997899998599989999967994999990089079999--41--6997589
Q 003579          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTF--TH--SMRGAVT  228 (809)
Q Consensus       153 ~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~--~~--~~~~~V~  228 (809)
                      .+++.+.+|+|++||..+++++.++..+ ..+..++|||||+++++++.|+.+++||+.+++.....  ..  .+.+.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEE
T ss_conf             9999759997999999999599999689-980389998999999999589988999756886048999867888764588


Q ss_pred             EEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCC-EEEEECCCCCEEEE
Q ss_conf             99980199988999909980999988985022245313346527999945999-89998199947999
Q 003579          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMW  295 (809)
Q Consensus       229 ~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~d~~i~iw  295 (809)
                      +++|+|||+.+++++..++.+.+||..++.+..... .|...+....+.+++. ..+..+.|+...++
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~  179 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  179 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEE-CCCCCCCCEEECCCCCEEEEEECCCCCEEEE
T ss_conf             500268898799963589769998577641257862-2677736436427885038998787878888

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.3e-37  Score=225.42  Aligned_cols=188  Identities=12%  Similarity=0.089  Sum_probs=133.5

Q ss_pred             EEEEC-CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC--EEEEEEEECCEEEEEE
Q ss_conf             99917-99988999995778099996899916999828999789999859998999996799--4999990089079999
Q 003579          143 CIMHP-DTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG--KIHVHNVRYDEELVTF  219 (809)
Q Consensus       143 ~~~~p-~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg--~i~iwd~~~~~~~~~~  219 (809)
                      .-|+| ++  +++++++ +|.|++|+.+++..++.  +|...|.+++|+||+++|++++.+.  .|++||..+++.. .+
T Consensus         8 ~~fSP~dG--~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~   81 (360)
T d1k32a3           8 EDFSPLDG--DLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF   81 (360)
T ss_dssp             EEEEECGG--GCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred             CCCCCCCC--CEEEEEE-CCEEEEEECCCCCEEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EE
T ss_conf             51468899--9999998-99699998999948991--6999888899989999999999289989999989999488-75


Q ss_pred             ECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEC----------CC
Q ss_conf             41699758999980199988999909980999988985022245313346527999945999899981----------99
Q 003579          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------AD  289 (809)
Q Consensus       220 ~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s----------~d  289 (809)
                      ..+ .+.+.+++|+||++ ++++++.++.+.+|++.+++....+. .|...+.+++|+|++.+|+.+.          .+
T Consensus        82 ~~~-~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          82 EEN-LGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             CCC-CCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             ECC-CCEEEEEEECCCCC-CCCEECCCCCCCCCCCCCCCEEEEEE-CCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCC
T ss_conf             089-71277412114543-21000111110000012221000000-1355202301213225665212331211000256


Q ss_pred             CCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf             9479999207999950279435889999669990399799999789978999963
Q 003579          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (809)
Q Consensus       290 ~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (809)
                      +.+++|+....     .......+...+..+.|+|+|+.|++++.++.+.+|+..
T Consensus       159 ~~~~v~d~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         159 QAIHVYDMEGR-----KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EEEEEEETTTT-----EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             CCEEEECCCCC-----CEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCC
T ss_conf             54266304557-----135303543221100125779999999599855753335

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-35  Score=212.71  Aligned_cols=187  Identities=15%  Similarity=0.142  Sum_probs=96.2

Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC-EEEEEECCCC
Q ss_conf             999996899899999379929999787783002660755224567556479999918998999995767-0999977998
Q 003579          428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGR  506 (809)
Q Consensus       428 ~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg-~i~iwd~~~~  506 (809)
                      ..+++++++..++.+ .++.+.+|+..++.....+.         +...+  .++++++..+++++.++ .+++|++...
T Consensus        84 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~  151 (287)
T d1pgua2          84 KVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR---------LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDL  151 (287)
T ss_dssp             EEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE---------CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred             EEEEECCCCCEEEEE-ECCCCEEEECCCEEEEEECC---------CCCEE--EEEECCCCCEEEECCCCCEEEEEECCCC
T ss_conf             146641678569996-03321000011003543101---------22203--5652147511100022100021000122


Q ss_pred             CEEEEEE--CCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEE-EEECCCCCEEEEEECCC----------CCEEE
Q ss_conf             5345344--18772799992079899999499929999957885899-97249998106998789----------97999
Q 003579          507 DLKSRWE--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR-KFEGHTDRITDFCFSED----------GKWLL  573 (809)
Q Consensus       507 ~~~~~~~--~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~-~~~~h~~~I~~i~fspd----------g~~l~  573 (809)
                      +......  +...+++++|+|++.++++++.|+.|++||+.+++... .+.+|..+|++++|+|+          +.+++
T Consensus       152 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~  231 (287)
T d1pgua2         152 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA  231 (287)
T ss_dssp             EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred             CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEE
T ss_conf             10001210247853699951676521101111110000002332110001111111100000136541001267887027


Q ss_pred             EEECCCEEEEEECCC-CCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             991899099998697-63788765276-35899976799838999737974999644
Q 003579          574 SSGMDGSLRIWDVIL-ARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN  628 (809)
Q Consensus       574 s~s~Dg~I~iwd~~~-~~~i~~~~~~~-~v~~i~~spdg~~lat~~~d~~~i~iW~~  628 (809)
                      +++.|++|++||+.+ ++++..+..|. .|++++|+|++ .|++++.|+ .|++|++
T Consensus       232 sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~-~v~iW~i  286 (287)
T d1pgua2         232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADA-CIKRWNV  286 (287)
T ss_dssp             EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTS-CEEEEEE
T ss_pred             EECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCC-EEEEEEE
T ss_conf             664999599988899975899927878985899998999-899997999-2999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=3.1e-37  Score=223.36  Aligned_cols=136  Identities=13%  Similarity=0.055  Sum_probs=76.4

Q ss_pred             EEECC-CCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEEC-CC-CCEEEEECCCCEEEEEE
Q ss_conf             99859-99899999679949999900890799994169975899998019998899990-99-80999988985022245
Q 003579          187 CVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA-SS-GVISIWNLEKRRLQSVI  263 (809)
Q Consensus       187 l~~sp-~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~-~d-g~I~iwdl~~~~~~~~~  263 (809)
                      -.||| ||+++|+++ +|.|++|++..+..+. +  .|...|.+++|+|||+ .|++++ .+ ..|++||+++++.....
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v~d~~~~~~~~~~   82 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTK-VAFIHGTREGDFLGIYDYRTGKAEKFE   82 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSE-EEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             CCCCCCCCCEEEEEE-CCEEEEEECCCCCEEE-C--CCCCCEEEEEECCCCC-EEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf             514688999999998-9969999899994899-1--6999888899989999-999999289989999989999488750


Q ss_pred             ECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf             3133465279999459998999819994799992079999502794358899996699903997999997
Q 003579          264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (809)
Q Consensus       264 ~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~  333 (809)
                        .|...+.+++|+|++++|++++.++.+++|+.+..    ........|...+.+++|+|+|++|+.+.
T Consensus        83 --~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          83 --ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG----KPTVIERSREAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             --CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             --CCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCC----CEEEEEECCCCCCCCHHHCCCEEEEEEEC
T ss_conf             --89712774121145432100011111000001222----10000001355202301213225665212

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.4e-35  Score=213.91  Aligned_cols=360  Identities=11%  Similarity=0.011  Sum_probs=207.5

Q ss_pred             EEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCE--EEEEC---CC
Q ss_conf             99996799399998278865530022697389434179991799988999995778099996899916--99982---89
Q 003579          106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK--LYEFK---GW  180 (809)
Q Consensus       106 l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~--~~~~~---~~  180 (809)
                      +++.+.+|.|.+||..+++.    +.++..+. ....++|+|++  +++++++.||.+.+||+.+++.  +..++   +|
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v----~~~~~~g~-~~~~v~fSpDG--~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEI----KTVLDTGY-AVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCE----EEEEECSS-CEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             EEEECCCCEEEEEECCCCCE----EEEEECCC-CEEEEEECCCC--CEEEEECCCCCEEEEEEECCCCEEEEEEECCCCC
T ss_conf             99976999799998999839----99973799-71379988999--9999982899978998108981288998448898


Q ss_pred             CCCEEEEEECCCCCEE-EEEECCCEEEEEEEECCEEEEEEECC----------CCCCEEEEEEECCCCCEEEEECCCCCE
Q ss_conf             9978999985999899-99967994999990089079999416----------997589999801999889999099809
Q 003579          181 GSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHS----------MRGAVTALAFSSDGQPLLASGASSGVI  249 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~----------~~~~V~~l~fs~dg~~~lasg~~dg~I  249 (809)
                      .+.+.+..|+|||++| +++..++.+++||..+++.+..+..+          +.+...++.+++++..++++...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf             77698432188888899981789827999076554225402477643522016888505899878999899998168829


Q ss_pred             EEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECC-CCCEEEEEEECCCCCCEEEEEC-----CCCCCCCEEEEEE
Q ss_conf             999889850222453133465279999459998999819-9947999920799995027943-----5889999669990
Q 003579          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPLCIRFY  323 (809)
Q Consensus       250 ~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~-----~~h~~~v~~i~~~  323 (809)
                      .+|+..+.+........+...+..+.|+|+++++++++. ++.+.+++.+..    +.....     ..|........+.
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~----~~~~~~~~g~~~~~~~~~~~~~~~  263 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG----KLVAIEDTGGQTPHPGRGANFVHP  263 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSSBCCTTCEEEEET
T ss_pred             EEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCC----EEEEEECCCCCCCCCCCCCCEECC
T ss_conf             9998437875227998336754265388988799995166636777614452----688872148622456766410148


Q ss_pred             CCCCEEEEEE-CCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEE
Q ss_conf             3997999997-899789999630543212022357798752010143302684127751231146663038964299609
Q 003579          324 ANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (809)
Q Consensus       324 ~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (809)
                      ..+....+.. .++.+.+|......                                                       
T Consensus       264 ~~g~~~~~~~lg~~~v~~~~~~~~~-------------------------------------------------------  288 (432)
T d1qksa2         264 TFGPVWATSHMGDDSVALIGTDPEG-------------------------------------------------------  288 (432)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTT-------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEECCCCCCC-------------------------------------------------------
T ss_conf             9883102135688358762456655-------------------------------------------------------


Q ss_pred             EEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf             99990124632154206999999759999968998999993799299997877830026607552245675564799999
Q 003579          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC  482 (809)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~  482 (809)
                                       ...+...+....+++++..++++..+...++|......              .|......+++
T Consensus       289 -----------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------~~~~~~~sv~v  337 (432)
T d1qksa2         289 -----------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN--------------PEAEISGSVAV  337 (432)
T ss_dssp             -----------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC--------------SSHHHHTCEEE
T ss_pred             -----------------CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC--------------CCCCEEEEEEE
T ss_conf             -----------------54656577799886899768887268864102112678--------------88770359999


Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEE-----CCCEEEEEECCCCEEEEEEECCC
Q ss_conf             1899899999576709999779985345344187727999920798999994-----99929999957885899972499
Q 003579          483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-----DDLVIRLFDVVALRMVRKFEGHT  557 (809)
Q Consensus       483 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-----~d~~I~i~d~~~~~~~~~~~~h~  557 (809)
                       |+++.+++++.|+.+++|++.++..+  .+++..+.+++|+|||++++++.     .++.|.|||..++++...+.+..
T Consensus       338 -pDg~~la~~s~d~~~k~w~~~~~~~l--~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~  414 (432)
T d1qksa2         338 -FDIKAMTGDGSDPEFKTLPIAEWAGI--TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER  414 (432)
T ss_dssp             -EEGGGCCCSSSCCCEEEECHHHHHTC--CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             -EECHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCCC
T ss_conf             -96246104556784486334344445--789986897679899999999970488888868999999955886846888


Q ss_pred             CCEEEEEECCCCCE
Q ss_conf             98106998789979
Q 003579          558 DRITDFCFSEDGKW  571 (809)
Q Consensus       558 ~~I~~i~fspdg~~  571 (809)
                            .++|+|++
T Consensus       415 ------~~tp~G~~  422 (432)
T d1qksa2         415 ------LVTPTGKF  422 (432)
T ss_dssp             ------CCSEEEEE
T ss_pred             ------CCCCCEEE
T ss_conf             ------40897067

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=3.6e-34  Score=205.96  Aligned_cols=142  Identities=12%  Similarity=0.004  Sum_probs=98.3

Q ss_pred             EEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEE----CCCCCC
Q ss_conf             9999967994999990089079999416997589999801999889999099809999889850222453----133465
Q 003579          195 VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNA  270 (809)
Q Consensus       195 ~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~----~~h~~~  270 (809)
                      ++++...||.|++||+.+++.+.++..+  ..+..++|+|||+ ++++++.|+.|++||+.+++......    .+|.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC--SSEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEEECC--CCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCE
T ss_conf             9999759997999999999599999689--9803899989999-999995899889997568860489998678887645


Q ss_pred             EEEEEEECCCCEEEE-ECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCE-EEEEECCCCEEEEEE
Q ss_conf             279999459998999-8199947999920799995027943588999966999039979-999978997899996
Q 003579          271 IISLHFFANEPVLMS-ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFSV  343 (809)
Q Consensus       271 v~~l~~~~~~~~l~s-~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~-l~s~~~dg~i~iwd~  343 (809)
                      +.++.|+||++++++ +..++.+++|+....    .+.....+|...+....+.+++.. .+..+.|+...++..
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~  181 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETL----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  181 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTC----CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCC----CEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEEC
T ss_conf             8850026889879996358976999857764----1257862267773643642788503899878787888852

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-33  Score=200.21  Aligned_cols=147  Identities=21%  Similarity=0.384  Sum_probs=86.6

Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEE
Q ss_conf             75564799999189989999957670999977998534534418-77279999207989999949992999995788589
Q 003579          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  550 (809)
Q Consensus       472 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~  550 (809)
                      .|...+....+.+  ..+++++.|+.+++|+..+++.+..+... ..+..+.+  ++..+++++.|+.|++||+.+.+.+
T Consensus       136 ~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  211 (293)
T d1p22a2         136 GHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL  211 (293)
T ss_dssp             CCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCCCCCCCEECC--CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCC--CCCEEEEECCCCEEEEEECCCCEEE
T ss_conf             1135431100000--22011069986041007888388997155445322168--9875887658998999866556146


Q ss_pred             EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC---------CCEEEEEEECC-CEEEEEECCCCCEEEEEEECC
Q ss_conf             99724999810699878997999991899099998697---------63788765276-358999767998389997379
Q 003579          551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL---------ARQIDAIHVDV-SITALSLSPNMDVLATAHVDQ  620 (809)
Q Consensus       551 ~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~---------~~~i~~~~~~~-~v~~i~~spdg~~lat~~~d~  620 (809)
                      ..+.+|...+..  +++++.+|++++.||.|++||+..         ..++..+..|. .|++++|  ++.+|++++.|+
T Consensus       212 ~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg  287 (293)
T d1p22a2         212 RVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD  287 (293)
T ss_dssp             EEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             EEECCCCEEEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEE--CCCEEEEEECCC
T ss_conf             652143100000--1454107999867997999988888644456775455784588998899997--199999992299


Q ss_pred             CEEEEEE
Q ss_conf             7499964
Q 003579          621 NGVYLWV  627 (809)
Q Consensus       621 ~~i~iW~  627 (809)
                       .|++|+
T Consensus       288 -~i~iWD  293 (293)
T d1p22a2         288 -TILIWD  293 (293)
T ss_dssp             -EEEEEC
T ss_pred             -EEEEEC
T ss_conf             -899959

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=2.1e-28  Score=173.31  Aligned_cols=122  Identities=12%  Similarity=0.093  Sum_probs=67.0

Q ss_pred             EEEEEECCCCCEEEEEECC-CEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEEC---CCEEEEEECCCCEEEEE
Q ss_conf             7999991899899999576-7099997799853453441877279999207989999949---99299999578858999
Q 003579          477 VVGVACDSTNTLMISAGYH-GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRK  552 (809)
Q Consensus       477 v~~i~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~---d~~I~i~d~~~~~~~~~  552 (809)
                      +..+++++++..++++..+ +.+.+|+....+..........+..+++++++..++++..   ++.|++||..+++++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~  239 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR  239 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEE
T ss_conf             42888604654013101211111111111000111013357750311011110111100210000232365699819999


Q ss_pred             EECCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEECC
Q ss_conf             72499981069987899799-999189909999869763788765276
Q 003579          553 FEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVILARQIDAIHVDV  599 (809)
Q Consensus       553 ~~~h~~~I~~i~fspdg~~l-~s~s~Dg~I~iwd~~~~~~i~~~~~~~  599 (809)
                      +..+ ..+.+++|+|||++| ++++.|+.|++||+.+++++..+....
T Consensus       240 ~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~  286 (301)
T d1l0qa2         240 IPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGK  286 (301)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             ECCC-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCC
T ss_conf             8489-9877999918989999998999969999999995999996899

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.98  E-value=2.7e-27  Score=166.98  Aligned_cols=175  Identities=15%  Similarity=0.220  Sum_probs=125.9

Q ss_pred             EEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEE
Q ss_conf             9995778099996899916999828999789999859998999-996799499999008907999941699758999980
Q 003579          155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS  233 (809)
Q Consensus       155 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs  233 (809)
                      ++++.+++|.+||+++++.+.+++. ......++++|++++|+ ++..++.|.+||+.+++.+..+..+  ..+..++|+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~--~~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECC--CCCCCCCCC
T ss_conf             9978999899999999959999988-9983699992898999999789998999999989410320002--464311000


Q ss_pred             CCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEE-EECCCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf             199988999909980999988985022245313346527999945999899-9819994799992079999502794358
Q 003579          234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSG  312 (809)
Q Consensus       234 ~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~  312 (809)
                      +++..+++++..++.+.+|+..+++....+.  +.....++.|+|++..++ ++..++.+.+|+....    ....... 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-  155 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTVS-  155 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEE-
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCEEEEECC--CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCC----CEEEECC-
T ss_conf             1111111111111001100124302432024--44442378760589715542011110011000146----3035315-


Q ss_pred             CCCCCEEEEEECCCCEEEEEECCCCEE
Q ss_conf             899996699903997999997899789
Q 003579          313 HSAPPLCIRFYANGRHILSAGQDRAFR  339 (809)
Q Consensus       313 h~~~v~~i~~~~~g~~l~s~~~dg~i~  339 (809)
                      +...+..+.+++++..++++..+....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (301)
T d1l0qa2         156 VGRSPKGIAVTPDGTKVYVANFDSMSI  182 (301)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCCCEEEEEECCCCCEEEECCCCCCC
T ss_conf             678842888604654013101211111

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.98  E-value=1.5e-30  Score=185.46  Aligned_cols=312  Identities=8%  Similarity=-0.003  Sum_probs=155.3

Q ss_pred             EEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECC
Q ss_conf             99859998999996799499999008907999941699758999980199988999909980999988985022245313
Q 003579          187 CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA  266 (809)
Q Consensus       187 l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~  266 (809)
                      ++++++++++++++.++.|.+||+.+++.+.++..++...+.+++|+|||+.+++++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf             55889996999986999799999999989999994899970459997898999999789993999967567131231036


Q ss_pred             C-----CCCEEEEEEECCCCEEEEEC------------CCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEE
Q ss_conf             3-----46527999945999899981------------999479999207999950279435889999669990399799
Q 003579          267 H-----DNAIISLHFFANEPVLMSAS------------ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (809)
Q Consensus       267 h-----~~~v~~l~~~~~~~~l~s~s------------~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l  329 (809)
                      .     ...+..+.|+||+.++++++            .++.+.+|+.............  .....+..+.+.+++..+
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEE
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEE--ECCCCEEEEEECCCCEEE
T ss_conf             543454774179999058888999705775215651467624899852563265688731--024743999952787899


Q ss_pred             EEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf             99978997899996305432120223577987520101433026841277512311466630389642996099999012
Q 003579          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (809)
Q Consensus       330 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  409 (809)
                      +.   ++.+.+|++.+......+...                                                      
T Consensus       160 ~~---~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  182 (346)
T d1jmxb_         160 VA---GPDIYKMDVKTGKYTVALPLR------------------------------------------------------  182 (346)
T ss_dssp             EE---SSSEEEECTTTCCEEEEECST------------------------------------------------------
T ss_pred             EE---CCCCEEEECCCCCEEEEEECC------------------------------------------------------
T ss_conf             84---796269980699789999648------------------------------------------------------


Q ss_pred             EEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECC-CCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf             463215420699999975999996899899999379-9299997877830026607552245675564799999189989
Q 003579          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (809)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~  488 (809)
                                     .....+.++|++..+...... +.+.++.                         ....+......
T Consensus       183 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~  222 (346)
T d1jmxb_         183 ---------------NWNRKGYSAPDVLYFWPHQSPRHEFSMLY-------------------------TIARFKDDKQD  222 (346)
T ss_dssp             ---------------TCCCTTBCCCBCCCCCCCCCTTCEEEEEE-------------------------EEEEC------
T ss_pred             ---------------CCCCCEEEECCCCEEEEEECCCCCEEEEE-------------------------EEEEECCCCEE
T ss_conf             ---------------98662377125528999864998167651-------------------------23111267325


Q ss_pred             EEEEECCCEEEEEECCCCCEEEEE--ECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEC
Q ss_conf             999957670999977998534534--418772799992079899999499929999957885899972499981069987
Q 003579          489 MISAGYHGDIKVWDFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS  566 (809)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fs  566 (809)
                      +.++..++.+.+|+..++......  .....+..+.+++++.+++... ++.+++||..+++.++.+. +...+.+++||
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s  300 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFD  300 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEC-CCEEEEEECCCCCEEEEEC-CCCCEEEEEEC
T ss_conf             754047834999977788368787631566068889717997899942-9838999899993999974-99977899996


Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCEEEEEEECC
Q ss_conf             899799999189909999869763788765276
Q 003579          567 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV  599 (809)
Q Consensus       567 pdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~  599 (809)
                      |||++|++++.|+.|++||+.+++.+..+..+.
T Consensus       301 ~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             SSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             CCCCEEEEEECCCCEEEEECCCCCEEEEEECCC
T ss_conf             899999999489929999996587979998899

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.98  E-value=1.5e-29  Score=179.81  Aligned_cols=298  Identities=11%  Similarity=0.053  Sum_probs=148.3

Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEECCC--CCCEEEEEECCCCCEEE-EEECCCEEEEEEEECCEEEEEEECCCC----
Q ss_conf             89999957780999968999169998289--99789999859998999-996799499999008907999941699----
Q 003579          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGW--GSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFTHSMR----  224 (809)
Q Consensus       152 ~~i~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~I~~l~~sp~~~~la-~g~~dg~i~iwd~~~~~~~~~~~~~~~----  224 (809)
                      +++++++.+++|.+||+++++++.++..+  ...+.+++++||+++++ +++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf             69999767998999999999499999877889982379999998999999789994999999999298887247773125


Q ss_pred             CCEEEEEEECCCCCEEEEEC------------CCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCE
Q ss_conf             75899998019998899990------------998099998898502224531334652799994599989998199947
Q 003579          225 GAVTALAFSSDGQPLLASGA------------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (809)
Q Consensus       225 ~~V~~l~fs~dg~~~lasg~------------~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i  292 (809)
                      ..+..++|+|+++ .++++.            .++.+.+||..+++....+.  +...+..+.|++++.++++++.+  +
T Consensus        82 ~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~--~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGLGRD--L  156 (337)
T ss_dssp             ECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEESSS--E
T ss_pred             CCEEEEEECCCCC-EEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECC--CCCCCEEEEECCCCCEEEEECCC--C
T ss_conf             4025489868775-79995047762034203455521203566775988414--56872189986888889997177--5


Q ss_pred             EEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHC
Q ss_conf             99992079999502794358899996699903997999997899789999630543212022357798752010143302
Q 003579          293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK  372 (809)
Q Consensus       293 ~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (809)
                      .+|+....    ........+.. .....+.+++..+........                                   
T Consensus       157 ~~~d~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------------  196 (337)
T d1pbyb_         157 HVMDPEAG----TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSG-----------------------------------  196 (337)
T ss_dssp             EEEETTTT----EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTT-----------------------------------
T ss_pred             CEEEEECC----CEEEEEECCCC-CCCCEECCCCCEEECCCCCCC-----------------------------------
T ss_conf             05663037----27888614775-433113577631401466531-----------------------------------


Q ss_pred             CCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             68412775123114666303896429960999990124632154206999999759999968998999993799299997
Q 003579          373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN  452 (809)
Q Consensus       373 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~  452 (809)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (337)
T d1pbyb_         197 --------------------------------------------------------------------------------  196 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--ECCCCEEEEEEEECCCEE
Q ss_conf             877830026607552245675564799999189989999957670999977998534534--418772799992079899
Q 003579          453 LQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--EVGCSLVKIVYHRVNGLL  530 (809)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~i~~~~~s~~~~~l  530 (809)
                                           ...........+.........++.+.+|+..++......  ........+.+++++.++
T Consensus       197 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (337)
T d1pbyb_         197 ---------------------VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA  255 (337)
T ss_dssp             ---------------------EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             ---------------------EEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEE
T ss_conf             ---------------------24663244410366045403676179998688858889832887505888742661399


Q ss_pred             EEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC
Q ss_conf             99949992999995788589997249998106998789979999918990999986976378876527
Q 003579          531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD  598 (809)
Q Consensus       531 a~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~  598 (809)
                      +.+  ++.+++||+.+++.+..+. +...+.+++|+|||++|++++.|+.|++||..+++.+..+..+
T Consensus       256 ~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         256 FGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECC
T ss_conf             973--5528999898896999974-8998899999789999999949992999999987698999889

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=3.3e-28  Score=172.14  Aligned_cols=91  Identities=8%  Similarity=-0.027  Sum_probs=43.5

Q ss_pred             CCEEEEEECCCCEEEE-EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEE
Q ss_conf             9929999957885899-972499981069987899799999189909999869763788765276358999767998389
Q 003579          536 DLVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLA  614 (809)
Q Consensus       536 d~~I~i~d~~~~~~~~-~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~i~~spdg~~la  614 (809)
                      ++.+.+|+..++.... .+..+...+..+.+++++.+++.+  ++.|++||+.+++.+..+.....+.+++|+|||++|+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~  295 (337)
T d1pbyb_         218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEE
T ss_pred             CCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEE
T ss_conf             76179998688858889832887505888742661399973--5528999898896999974899889999978999999


Q ss_pred             EEEECCCEEEEEECC
Q ss_conf             997379749996447
Q 003579          615 TAHVDQNGVYLWVNR  629 (809)
Q Consensus       615 t~~~d~~~i~iW~~~  629 (809)
                      +++.++ .|++|+.+
T Consensus       296 v~~~~~-~i~v~D~~  309 (337)
T d1pbyb_         296 LGGALG-DLAAYDAE  309 (337)
T ss_dssp             EESBSS-EEEEEETT
T ss_pred             EEECCC-CEEEEECC
T ss_conf             994999-29999999

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.97  E-value=3.2e-28  Score=172.25  Aligned_cols=312  Identities=9%  Similarity=0.000  Sum_probs=191.3

Q ss_pred             EEECCCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEE-ECCCEEEEEEEECCEEEEEEEC
Q ss_conf             99179998899999577809999689991699982-899978999985999899999-6799499999008907999941
Q 003579          144 IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPALDVVAVG-CSDGKIHVHNVRYDEELVTFTH  221 (809)
Q Consensus       144 ~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~la~g-~~dg~i~iwd~~~~~~~~~~~~  221 (809)
                      ++++++  +++++++.+++|.+||+++++++.+++ .+...+.+++|+||+++++++ ..++.|.+||+.+++.+..+..
T Consensus         3 a~~~~~--~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           3 ALKAGH--EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCTTC--EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             CCCCCC--CEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf             588999--699998699979999999998999999489997045999789899999978999399996756713123103


Q ss_pred             CCC-----CCEEEEEEECCCCCEEEEEC------------CCCCEEEEECCCCEEEEEEECC-CCCCEEEEEEECCCCEE
Q ss_conf             699-----75899998019998899990------------9980999988985022245313-34652799994599989
Q 003579          222 SMR-----GAVTALAFSSDGQPLLASGA------------SSGVISIWNLEKRRLQSVIREA-HDNAIISLHFFANEPVL  283 (809)
Q Consensus       222 ~~~-----~~V~~l~fs~dg~~~lasg~------------~dg~I~iwdl~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l  283 (809)
                      ...     ..+..++|+|||+ .++++.            .++.+.+|+..+++....+... ....+..+.+.+++.++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             CCCCCCCCCCEEEEEEECCCC-EEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCEEE
T ss_conf             654345477417999905888-8999705775215651467624899852563265688731024743999952787899


Q ss_pred             EEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEE-CCCCEEEEEEEECCCCEECCHHHHHHHHH
Q ss_conf             99819994799992079999502794358899996699903997999997-89978999963054321202235779875
Q 003579          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (809)
Q Consensus       284 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  362 (809)
                      +++   +.+.+|+....    ........+ ..+..+.++|++..++... .++.+.++.....                
T Consensus       160 ~~~---~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  215 (346)
T d1jmxb_         160 VAG---PDIYKMDVKTG----KYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR----------------  215 (346)
T ss_dssp             EES---SSEEEECTTTC----CEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE----------------
T ss_pred             EEC---CCCEEEECCCC----CEEEEEECC-CCCCCEEEECCCCEEEEEECCCCCEEEEEEEEE----------------
T ss_conf             847---96269980699----789999648-986623771255289998649981676512311----------------


Q ss_pred             HCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf             20101433026841277512311466630389642996099999012463215420699999975999996899899999
Q 003579          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (809)
Q Consensus       363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g  442 (809)
                                                                                           .......+..+
T Consensus       216 ---------------------------------------------------------------------~~~~~~~~~~~  226 (346)
T d1jmxb_         216 ---------------------------------------------------------------------FKDDKQDPATA  226 (346)
T ss_dssp             ---------------------------------------------------------------------C-------CCC
T ss_pred             ---------------------------------------------------------------------ECCCCEEEEEC
T ss_conf             ---------------------------------------------------------------------12673257540


Q ss_pred             ECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             37992999978778300266075522456755647999991899899999576709999779985345344187727999
Q 003579          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV  522 (809)
Q Consensus       443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~  522 (809)
                      ...+.+.+|+...+.......       ..+...+..+.+++++..++.... +.+.+||..+++.+..+.....+.+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va  298 (346)
T d1jmxb_         227 DLLYGYLSVDLKTGKTHTQEF-------ADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVA  298 (346)
T ss_dssp             EEEEEEEEEETTTCCEEEEEE-------EECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEE-------ECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf             478349999777883687876-------315660688897179978999429-838999899993999974999778999


Q ss_pred             EEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf             9207989999949992999995788589997249998
Q 003579          523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR  559 (809)
Q Consensus       523 ~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~  559 (809)
                      |+||++++++++.|+.|++||..+++.+.++..+.+.
T Consensus       299 ~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         299 FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             ECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             ECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCC
T ss_conf             9689999999948992999999658797999889998

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.97  E-value=6.7e-25  Score=153.40  Aligned_cols=140  Identities=11%  Similarity=-0.047  Sum_probs=83.5

Q ss_pred             EECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             93799299997877830026607552245675564799999189989999957670999977998534534418772799
Q 003579          442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI  521 (809)
Q Consensus       442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~  521 (809)
                      ...++.+.+|+...+.......      ...+........+.+.....+..+.|+...++                    
T Consensus       230 ~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------------------  283 (373)
T d2madh_         230 PVYSGKILQADISAAGATNKAP------IDALSGGRKADTWRPGGWQQVAYLKSSDGIYL--------------------  283 (373)
T ss_pred             ECCCCEEEEEECCCCEEEEEEE------ECCCCCCEEEEEECCCCCEEEEEECCCCEEEE--------------------
T ss_conf             2589659999768990789776------30564757866413674133577149975999--------------------


Q ss_pred             EEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE--EEEEECCCEEEEEECCCCCEEEEEEEC-
Q ss_conf             99207989999949992999995788589997249998106998789979--999918990999986976378876527-
Q 003579          522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW--LLSSGMDGSLRIWDVILARQIDAIHVD-  598 (809)
Q Consensus       522 ~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~--l~s~s~Dg~I~iwd~~~~~~i~~~~~~-  598 (809)
                       +..++..++....++.+.+||..+++.+..+. +...+.+++|+|||+.  +++++.|++|++||+.+++.+..+..+ 
T Consensus       284 -~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         284 -LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             -ECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf             -54888247862589869999899996989866-8998258999989998999996799929999999998999988889


Q ss_pred             CCEEEEEECCC
Q ss_conf             63589997679
Q 003579          599 VSITALSLSPN  609 (809)
Q Consensus       599 ~~v~~i~~spd  609 (809)
                      ...+.+++.++
T Consensus       362 ~~P~~l~~~~~  372 (373)
T d2madh_         362 SGPQVLSVMNE  372 (373)
T ss_pred             CCCCEEEEECC
T ss_conf             89818998468

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.96  E-value=4.4e-24  Score=148.80  Aligned_cols=327  Identities=11%  Similarity=-0.043  Sum_probs=208.4

Q ss_pred             CCCCCCEEEEECCCCCCEEEEE-----ECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------
Q ss_conf             8943417999179998899999-----5778099996899916999828999789999859998999996----------
Q 003579          136 DDKFTPTCIMHPDTYLNKVIVG-----SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------  200 (809)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~i~~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~----------  200 (809)
                      +.......+++|++  +++++.     +..+.+.+||..+++.+.++..+..+  .++|+|||++++++.          
T Consensus        19 ~~~p~~~~a~spdg--~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          19 ADGPTNDEAPGADG--RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CCCCCCCCCCCCCC--CEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCC
T ss_conf             78986563018999--7899973422578765999989999799999579886--0798689998999960577532124


Q ss_pred             CCCEEEEEEEECCEEEEEEECCCCC------CEEEEEEECCCCCEEEEE-CCCCCEEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf             7994999990089079999416997------589999801999889999-099809999889850222453133465279
Q 003579          201 SDGKIHVHNVRYDEELVTFTHSMRG------AVTALAFSSDGQPLLASG-ASSGVISIWNLEKRRLQSVIREAHDNAIIS  273 (809)
Q Consensus       201 ~dg~i~iwd~~~~~~~~~~~~~~~~------~V~~l~fs~dg~~~lasg-~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~  273 (809)
                      .++.|.+||..+++.+..+..+...      ....+.|+++++.+++.. ..++.+.+|+....+.....     ....+
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  169 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-----SSPTC  169 (373)
T ss_pred             CCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE-----CCCEE
T ss_conf             5318999977789388897268851368516897089985899379999869874677623687289982-----45206


Q ss_pred             EEEECCCC-EEEEECCCCCEEEEEEECCCCCCEEEEECC--CCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCE
Q ss_conf             99945999-899981999479999207999950279435--889999669990399799999789978999963054321
Q 003579          274 LHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (809)
Q Consensus       274 l~~~~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~  350 (809)
                      +.+++++. .+++.+.|+.+.+|+...............  +.........+.+++ .++..+.++.+.+|+........
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCC-EEEEECCCCEEEEEECCCCEEEE
T ss_conf             99962899199999479939999747742667886300366753043458878994-29992589659999768990789


Q ss_pred             ECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEE
Q ss_conf             20223577987520101433026841277512311466630389642996099999012463215420699999975999
Q 003579          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (809)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v  430 (809)
                      ..                                                   .++.               ........
T Consensus       249 ~~---------------------------------------------------~~~~---------------~~~~~~~~  262 (373)
T d2madh_         249 KA---------------------------------------------------PIDA---------------LSGGRKAD  262 (373)
T ss_pred             EE---------------------------------------------------EECC---------------CCCCEEEE
T ss_conf             77---------------------------------------------------6305---------------64757866


Q ss_pred             EECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf             99689989999937992999978778300266075522456755647999991899899999576709999779985345
Q 003579          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (809)
Q Consensus       431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  510 (809)
                      .+.+.+...+....++.                              ....+...+..++....++.+.+||..+++.+.
T Consensus       263 ~~~~~~~~~~~~~~d~~------------------------------~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~  312 (373)
T d2madh_         263 TWRPGGWQQVAYLKSSD------------------------------GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             EECCCCCEEEEEECCCC------------------------------EEEEECCCCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf             41367413357714997------------------------------599954888247862589869999899996989


Q ss_pred             EEECCCCEEEEEEEECCC--EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf             344187727999920798--9999949992999995788589997249998106998789
Q 003579          511 RWEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (809)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~--~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspd  568 (809)
                      .+.....+..++|+||++  ++++++.|+.|++||+.+++.++++.++....+.+++.++
T Consensus       313 ~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         313 QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECC
T ss_conf             866899825899998999899999679992999999999899998888989818998468

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2e-22  Score=139.37  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             CEEEEEEEECCCEEEEE-ECCCEEEEEECCCCEEEE---EEECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEEC--CCC
Q ss_conf             72799992079899999-499929999957885899---9724999810699878997999991-8990999986--976
Q 003579          517 SLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVR---KFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILA  589 (809)
Q Consensus       517 ~i~~~~~s~~~~~la~~-~~d~~I~i~d~~~~~~~~---~~~~h~~~I~~i~fspdg~~l~s~s-~Dg~I~iwd~--~~~  589 (809)
                      ....++++++++++++. ..++.+.+|++.......   ........+.+++|+|||++|++++ .++.|++|++  .+|
T Consensus       231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG  310 (333)
T d1ri6a_         231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG  310 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred             CCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf             31268995156720550456882787887399978999999678997628999079899999988999399999979999


Q ss_pred             CE--EEEEEECCCEEEEEE
Q ss_conf             37--887652763589997
Q 003579          590 RQ--IDAIHVDVSITALSL  606 (809)
Q Consensus       590 ~~--i~~~~~~~~v~~i~~  606 (809)
                      .+  +..+.......++.+
T Consensus       311 ~l~~~~~~~~g~~p~~v~~  329 (333)
T d1ri6a_         311 LLHEKGRYAVGQGPMWVVV  329 (333)
T ss_dssp             EEEEEEEEECSSSCCEEEE
T ss_pred             CEEEEEECCCCCCCCEEEE
T ss_conf             6899983347999859999

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.4e-23  Score=144.60  Aligned_cols=116  Identities=11%  Similarity=0.051  Sum_probs=69.6

Q ss_pred             EEECCCCCCEEEEEE-----CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEE
Q ss_conf             991799988999995-----778099996899916999828999789999859998999996----------79949999
Q 003579          144 IMHPDTYLNKVIVGS-----QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVH  208 (809)
Q Consensus       144 ~~~p~~~~~~i~~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~----------~dg~i~iw  208 (809)
                      +.+|++  .++++..     ..+.+.+||..+++++.++..+..+  .++||||+++|++.+          .++.|.+|
T Consensus         8 a~spdg--~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~   83 (355)
T d2bbkh_           8 APAPDA--RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF   83 (355)
T ss_dssp             CCCCCT--TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EECCCC--CEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf             658999--9999982664777671999999999499999899998--569948999999996777642015899989999


Q ss_pred             EEECCEEEEEEECCCC------CCEEEEEEECCCCCEEEEEC--CCCCEEEEECCCCEEEEEEE
Q ss_conf             9008907999941699------75899998019998899990--99809999889850222453
Q 003579          209 NVRYDEELVTFTHSMR------GAVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIR  264 (809)
Q Consensus       209 d~~~~~~~~~~~~~~~------~~V~~l~fs~dg~~~lasg~--~dg~I~iwdl~~~~~~~~~~  264 (809)
                      |..+++.+..+..+..      .....++|+++++ .++++.  .+..+.+|+..+++....+.
T Consensus        84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCC-EEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf             99999798898058864031179873499933887-1577327988204543057883766770

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=7.4e-23  Score=141.82  Aligned_cols=304  Identities=13%  Similarity=0.073  Sum_probs=160.0

Q ss_pred             CEEEEEECCCCCEEEEEE-----CCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEE---------ECCCCC
Q ss_conf             789999859998999996-----799499999008907999941699758999980199988999---------909980
Q 003579          183 SISSCVSSPALDVVAVGC-----SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS---------GASSGV  248 (809)
Q Consensus       183 ~I~~l~~sp~~~~la~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~las---------g~~dg~  248 (809)
                      ++...+.+|+++.+++..     .++.+.+||..+++.+.++..+ .  ...++|+|||+.+.++         +..++.
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-F--LPNPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-S--SCEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECC-C--CCCEEECCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf             717476589999999982664777671999999999499999899-9--9856994899999999677764201589998


Q ss_pred             EEEEECCCCEEEEEEECCCC-------CCEEEEEEECCCCEEEEEC--CCCCEEEEEEECCCCCCEEEEECCCCCCCCEE
Q ss_conf             99998898502224531334-------6527999945999899981--99947999920799995027943588999966
Q 003579          249 ISIWNLEKRRLQSVIREAHD-------NAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (809)
Q Consensus       249 I~iwdl~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~s~s--~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~  319 (809)
                      |.+||+.+++.+..+. .+.       .....+.|++++..++.+.  .+..+.+|+....    +.......+..   .
T Consensus        80 v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~  151 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPDC---Y  151 (355)
T ss_dssp             EEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCSE---E
T ss_pred             EEEEECCCCCEEEEEE-CCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCC----CEEEEEECCCC---C
T ss_conf             9999999997988980-58864031179873499933887157732798820454305788----37667705874---0


Q ss_pred             EEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCC
Q ss_conf             99903997999997899789999630543212022357798752010143302684127751231146663038964299
Q 003579          320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (809)
Q Consensus       320 i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (809)
                      ..+.......+..+.|+....+.....                                                     
T Consensus       152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~-----------------------------------------------------  178 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCRDGSLAKVAFGTE-----------------------------------------------------  178 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCSS-----------------------------------------------------
T ss_pred             EEEECCCCCEEEECCCCCEEEEEECCC-----------------------------------------------------
T ss_conf             473069963699938999899983478-----------------------------------------------------


Q ss_pred             CEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEE
Q ss_conf             60999990124632154206999999759999968998999993799299997877830026607552245675564799
Q 003579          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (809)
Q Consensus       400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (809)
                                                                    +.+..++......             .+...+..
T Consensus       179 ----------------------------------------------~~~~~~~~~~~~~-------------~~~~~~~~  199 (355)
T d2bbkh_         179 ----------------------------------------------GTPEITHTEVFHP-------------EDEFLINH  199 (355)
T ss_dssp             ----------------------------------------------SCCEEEECCCCSC-------------TTSCBCSC
T ss_pred             ----------------------------------------------CEEEEEECCCCCC-------------EECCEEEE
T ss_conf             ----------------------------------------------7379996243330-------------00110610


Q ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--EC-----------CCCEEEEEEEECCCEEEEEECC----------
Q ss_conf             999189989999957670999977998534534--41-----------8772799992079899999499----------
Q 003579          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--EV-----------GCSLVKIVYHRVNGLLATVADD----------  536 (809)
Q Consensus       480 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~-----------~~~i~~~~~s~~~~~la~~~~d----------  536 (809)
                      ..+.+++..++.++.++.+++|++..+......  ..           ......+++++++..++....+          
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCC
T ss_conf             21538997388746998299996589907998445784412685433035108999807997678874068712651799


Q ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC--EEEEEECCCEEEEEECCCCCEEEEEEEC-CCEEEEEECCCC
Q ss_conf             9299999578858999724999810699878997--9999918990999986976378876527-635899976799
Q 003579          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK--WLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNM  610 (809)
Q Consensus       537 ~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~--~l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v~~i~~spdg  610 (809)
                      ..|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|+.|++||+.+++.+..+... .....+.+.++|
T Consensus       280 ~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEECCCC
T ss_conf             7599986788849899668-998779999289996999997899989999999998999992869796589969999

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.2e-21  Score=134.93  Aligned_cols=144  Identities=17%  Similarity=0.287  Sum_probs=60.6

Q ss_pred             EEEECCCEEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEEEECCEEEEEEE--CCCCCCEEE
Q ss_conf             99957780999968999169998--289997899998599989999967-9949999900890799994--169975899
Q 003579          155 IVGSQEGSLQLWNISTKKKLYEF--KGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFT--HSMRGAVTA  229 (809)
Q Consensus       155 ~~g~~dg~i~iwd~~~~~~~~~~--~~~~~~I~~l~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~--~~~~~~V~~  229 (809)
                      ++++.+++|++|++.+...+..+  ..+.+.+..++|+||+++|++++. |+.|.+|++.......++.  ......+..
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~   87 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   87 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEE
T ss_conf             98789993899998399976999997579988689995897999999778996999999689870798530136998549


Q ss_pred             EEEECCCCCEEEEEC-CCCCEEEEECCCCEEEEEEE-CCCCCCEEEEEEECCCCEEEEECC-CCCEEEEEEEC
Q ss_conf             998019998899990-99809999889850222453-133465279999459998999819-99479999207
Q 003579          230 LAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDT  299 (809)
Q Consensus       230 l~fs~dg~~~lasg~-~dg~I~iwdl~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~-d~~i~iw~~~~  299 (809)
                      ++|+|||+ +|++++ .++.+.+|+........... ..+...+.++.++++++.++.++. +..+.+|+...
T Consensus        88 l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          88 ISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             EEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEECCCCC-EEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECC
T ss_conf             99959998-8742056888302200111000000100377853149886301013102565542056897326

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=2.7e-21  Score=132.95  Aligned_cols=380  Identities=10%  Similarity=0.027  Sum_probs=195.5

Q ss_pred             EEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECC-----CCCCEEEEEECCCCCEEEEEEC---------CCEEEE
Q ss_conf             79991799988999995778099996899916999828-----9997899998599989999967---------994999
Q 003579          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-----WGSSISSCVSSPALDVVAVGCS---------DGKIHV  207 (809)
Q Consensus       142 ~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~-----~~~~I~~l~~sp~~~~la~g~~---------dg~i~i  207 (809)
                      ...+.+++  .+++  ..++.+.+||+.+++....+..     +...|.+..||||+++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~--~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDH--EYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSS--EEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEECCCC--EEEE--ECCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEE
T ss_conf             78968999--7999--7599499998899978999701564431676540599898897999977710001046734999


Q ss_pred             EEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCC-----------------CCC
Q ss_conf             990089079999416997589999801999889999099809999889850222453133-----------------465
Q 003579          208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH-----------------DNA  270 (809)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h-----------------~~~  270 (809)
                      ||+.+++. ..+..+ ...+....|+|||+ .+|... ++.+.+|+..+++.......+.                 .+.
T Consensus        97 ~d~~~~~~-~~l~~~-~~~~~~~~~SPDG~-~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          97 YDLNKRQL-ITEERI-PNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             EETTTTEE-CCSSCC-CTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EECCCCCC-CCCCCC-CCCCCCCCCCCCCC-EEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCC
T ss_conf             98988851-312468-74231010146764-135751-464137988999465321014777405354320112100477


Q ss_pred             EEEEEEECCCCEEEEECCCCC-EEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCC
Q ss_conf             279999459998999819994-7999920799995027943588999966999039979999978997899996305432
Q 003579          271 IISLHFFANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (809)
Q Consensus       271 v~~l~~~~~~~~l~s~s~d~~-i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~  349 (809)
                      ...+.|+||++.|+....|.+ +..|.+.......       ........+.+...+.    ...+..+.+|++......
T Consensus       173 ~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~  241 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPKAGA----VNPTVKFFVVNTDSLSSV  241 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCBTTS----CCCEEEEEEEEGGGCCSS
T ss_pred             CCCCEECCCCCCCCEEEECCCCCCEEEEEEECCCC-------CCCCEEEEECCCCCCC----CCCCCEEEEEECCCCCEE
T ss_conf             65307999987220268637767069987660477-------7887135403665454----688625799998886145


Q ss_pred             EECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEE
Q ss_conf             12022357798752010143302684127751231146663038964299609999901246321542069999997599
Q 003579          350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  429 (809)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~  429 (809)
                      .......                      ....                                   .........+..
T Consensus       242 ~~~~~~~----------------------~~~~-----------------------------------~~~~~~~~~~~~  264 (470)
T d2bgra1         242 TNATSIQ----------------------ITAP-----------------------------------ASMLIGDHYLCD  264 (470)
T ss_dssp             SCCCEEE----------------------ECCC-----------------------------------HHHHTSCEEEEE
T ss_pred             EECCCCC----------------------CCCC-----------------------------------CCCCCCCCEEEE
T ss_conf             5203322----------------------4786-----------------------------------334789866778


Q ss_pred             EEECCCCCEEEEEEC-CC-----CEEEEECCCCCEEEEEECC-----CCCCCCCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf             999689989999937-99-----2999978778300266075-----522456755647999991899899999576709
Q 003579          430 CTISACGNFAVLGTA-GG-----WIERFNLQSGISRGSYLDM-----SERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (809)
Q Consensus       430 v~~s~~g~~l~~g~~-~g-----~i~i~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i  498 (809)
                      +.|.+++..++.... .+     .+..++..++.........     ...-...+........++.++..+..+..||..
T Consensus       265 ~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~  344 (470)
T d2bgra1         265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR  344 (470)
T ss_dssp             EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCCCCC
T ss_conf             88768783347873046881599999961888947899987514662143353135777245423788479874367576


Q ss_pred             E--EEECCCCCEEEEEECCCCEEEEEEEECCCEE-EEEECCC------EEEEEECCCCEEEEEE----ECCCCCEEEEEE
Q ss_conf             9--9977998534534418772799992079899-9994999------2999995788589997----249998106998
Q 003579          499 K--VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL-ATVADDL------VIRLFDVVALRMVRKF----EGHTDRITDFCF  565 (809)
Q Consensus       499 ~--iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~l-a~~~~d~------~I~i~d~~~~~~~~~~----~~h~~~I~~i~f  565 (809)
                      +  +|+...+...........+..+ ++.+++.+ +++..++      .|+-.++..+.....+    .+|...+.+++|
T Consensus       345 ~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~f  423 (470)
T d2bgra1         345 HICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSF  423 (470)
T ss_dssp             EEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEE
T ss_pred             EEEEEECCCCCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf             4599952687304511698048787-897799999999568998351799999888998605703543588898799999


Q ss_pred             CCCCCEEE---EEECCCEEEEEECCCCCEEEEEEEC
Q ss_conf             78997999---9918990999986976378876527
Q 003579          566 SEDGKWLL---SSGMDGSLRIWDVILARQIDAIHVD  598 (809)
Q Consensus       566 spdg~~l~---s~s~Dg~I~iwd~~~~~~i~~~~~~  598 (809)
                      ||||++++   ++...-.+.+|+..+++.+..+...
T Consensus       424 Spdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         424 SKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             CTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf             989999999832899981999998999899998063

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.4e-19  Score=121.95  Aligned_cols=192  Identities=7%  Similarity=-0.080  Sum_probs=112.7

Q ss_pred             EEECCCCCCEEEE-EECC--CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEEE
Q ss_conf             9917999889999-9577--8099996899916999828999789999859998999996----------7994999990
Q 003579          144 IMHPDTYLNKVIV-GSQE--GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHNV  210 (809)
Q Consensus       144 ~~~p~~~~~~i~~-g~~d--g~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~----------~dg~i~iwd~  210 (809)
                      ...+++...+++. ...+  ..+.+||..+++.+.....+...  .++++||++.+++..          .++.|.+||.
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~  103 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             CCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEC
T ss_conf             5589876126972045788621799708998377888578777--51398999889997556764010356786999989


Q ss_pred             ECCEEEEEEECCCC------CCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEE
Q ss_conf             08907999941699------758999980199988999909980999988985022245313346527999945999899
Q 003579          211 RYDEELVTFTHSMR------GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM  284 (809)
Q Consensus       211 ~~~~~~~~~~~~~~------~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  284 (809)
                      .+++.+..+..+..      .....++|+|||+.++++...++.+.+||+.+++....+. .+.....   +......++
T Consensus       104 ~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~---~~~~~~~~v  179 (368)
T d1mdah_         104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK-SASCFHI---HPGAAATHY  179 (368)
T ss_dssp             TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE-CSSCCCC---EEEETTEEE
T ss_pred             CCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEE-CCCCCEE---CCCCCCEEE
T ss_conf             999383064378542102468864058878998999996899859999899893867860-4675237---469982399


Q ss_pred             EECCCCCEEEEEEECCCCCCEEE--EECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEE
Q ss_conf             98199947999920799995027--943588999966999039979999978997899996
Q 003579          285 SASADNSIKMWIFDTTDGDPRLL--RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (809)
Q Consensus       285 s~s~d~~i~iw~~~~~~~~~~~~--~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~  343 (809)
                      ..+.|+.+..|+...........  .....+...+....+.+++..+.+.  .+.+.+++.
T Consensus       180 ~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~  238 (368)
T d1mdah_         180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDI  238 (368)
T ss_dssp             CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEEC
T ss_pred             EECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEE
T ss_conf             99489988999826896266653031113566646601015586899934--897799960

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=3.4e-19  Score=121.03  Aligned_cols=310  Identities=7%  Similarity=-0.038  Sum_probs=158.2

Q ss_pred             CCCEEEEEECCCCCEEEEE---ECC--CEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEEC----------C
Q ss_conf             9978999985999899999---679--949999900890799994169975899998019998899990----------9
Q 003579          181 GSSISSCVSSPALDVVAVG---CSD--GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA----------S  245 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g---~~d--g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~----------~  245 (809)
                      .++...++..++++...+.   ..+  ..+.+||..+++.+.....+. .+  .++|+|||+ .+++.+          .
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~--~~a~spDg~-~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGS-DFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC--EEEECTTSS-CEEEEEEEETTTTSSSE
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCC-CC--CCEECCCCC-EEEEECCCCCCCCCCCC
T ss_conf             798666455898761269720457886217997089983778885787-77--513989998-89997556764010356


Q ss_pred             CCCEEEEECCCCEEEEEEECCCC-------CCEEEEEEECCCCEEEEEC-CCCCEEEEEEECCCCCCEEEEECCCCCCCC
Q ss_conf             98099998898502224531334-------6527999945999899981-999479999207999950279435889999
Q 003579          246 SGVISIWNLEKRRLQSVIREAHD-------NAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (809)
Q Consensus       246 dg~I~iwdl~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v  317 (809)
                      ++.|.+||..+++.+..+. .+.       .....+.|+||+++++.+. .++.+.+|+....    +.......+....
T Consensus        95 d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~----~~~~~~~~~~~~~  169 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA----SDDQLTKSASCFH  169 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT----EEEEEEECSSCCC
T ss_pred             CCEEEEEECCCCCEEEEEC-CCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCC----CEEEEEECCCCCE
T ss_conf             7869999899993830643-7854210246886405887899899999689985999989989----3867860467523


Q ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEEC
Q ss_conf             66999039979999978997899996305432120223577987520101433026841277512311466630389642
Q 003579          318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (809)
Q Consensus       318 ~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  397 (809)
                      .   +......++..+.||.+..++.............                                          
T Consensus       170 ~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~------------------------------------------  204 (368)
T d1mdah_         170 I---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA------------------------------------------  204 (368)
T ss_dssp             C---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC------------------------------------------
T ss_pred             E---CCCCCCEEEEECCCCCEEEEEECCCCEEEEEEEC------------------------------------------
T ss_conf             7---4699823999948998899982689626665303------------------------------------------


Q ss_pred             CCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCE
Q ss_conf             99609999901246321542069999997599999689989999937992999978778300266075522456755647
Q 003579          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (809)
Q Consensus       398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (809)
                                          .....+........+.+++..+.  ..++.+++++...+....                 
T Consensus       205 --------------------~~~~~~~~~~~~~~~~~~g~~~~--~~~~~v~~~~~~~~~~~~-----------------  245 (368)
T d1mdah_         205 --------------------QCTGAQNCSSQAAQANYPGMLVW--AVASSILQGDIPAAGATM-----------------  245 (368)
T ss_dssp             --------------------CSCTTSCBCSCCEEETTTTEEEE--CBSSCCEEEECCSSCCEE-----------------
T ss_pred             --------------------CCCCCCCCCEEECCCCCCCEEEE--ECCCCEEEEEECCCCEEE-----------------
T ss_conf             --------------------11135666466010155868999--348977999606993699-----------------


Q ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE---CCCCEEEEEEEECCCEEEEEEC---------CCEEEEEECC
Q ss_conf             999991899899999576709999779985345344---1877279999207989999949---------9929999957
Q 003579          478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGLLATVAD---------DLVIRLFDVV  545 (809)
Q Consensus       478 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~i~~~~~s~~~~~la~~~~---------d~~I~i~d~~  545 (809)
                                             ++...........   .......+++++++..+++...         ...|++||..
T Consensus       246 -----------------------~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         246 -----------------------KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             -----------------------ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             -----------------------EEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECC
T ss_conf             -----------------------760246543045540127883568871799879998358973340588649999899


Q ss_pred             CCEEEEEEECCCCCEEEEEECCCCCE--EEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             88589997249998106998789979--999918990999986976378876527635899976
Q 003579          546 ALRMVRKFEGHTDRITDFCFSEDGKW--LLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLS  607 (809)
Q Consensus       546 ~~~~~~~~~~h~~~I~~i~fspdg~~--l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~i~~s  607 (809)
                      +++.+..+.. ...+.+++|+|||+.  ++++..|+.|++||..+++.+..+........+++-
T Consensus       303 t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~  365 (368)
T d1mdah_         303 VGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             SCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred             CCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEE
T ss_conf             9948689558-99651799998999899999489996999989999799998799998789973

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.83  E-value=3.7e-20  Score=126.51  Aligned_cols=144  Identities=10%  Similarity=-0.048  Sum_probs=77.6

Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEE-EECCCEEEEEECCCCE------------E
Q ss_conf             18998999995767099997799853453441877279999207989999-9499929999957885------------8
Q 003579          483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT-VADDLVIRLFDVVALR------------M  549 (809)
Q Consensus       483 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~-~~~d~~I~i~d~~~~~------------~  549 (809)
                      .++++++.. +.++.+.+++....+.+..+..+.....+.++|||+++++ +..++++.+||+.+..            .
T Consensus       226 ~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         226 VKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             HHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             ECCCCEEEE-CCCCCEEEECCCCCCEEEEEECCCCCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEE
T ss_conf             669999996-9998289980368706899717988667268999878999077599389998322445752568842479


Q ss_pred             EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC----------CCEEEEEEE-----CC-CEEEEEECCCCCEE
Q ss_conf             999724999810699878997999991899099998697----------637887652-----76-35899976799838
Q 003579          550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL----------ARQIDAIHV-----DV-SITALSLSPNMDVL  613 (809)
Q Consensus       550 ~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~----------~~~i~~~~~-----~~-~v~~i~~spdg~~l  613 (809)
                      ..... ..-.....+|+++|..+.+...|..|..|++..          ...++.+..     |. .+.+.+++|||+||
T Consensus       305 ~~~~~-~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l  383 (441)
T d1qnia2         305 VAEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWL  383 (441)
T ss_dssp             EECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEE
T ss_pred             EEECC-CCCCCCCCEECCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             96014-55476652265785599852443168972354221332267776568645326689877524542238988489


Q ss_pred             EEEEECCCEEEEEECCCCCCCCC
Q ss_conf             99973797499964475567787
Q 003579          614 ATAHVDQNGVYLWVNRCMFSGDS  636 (809)
Q Consensus       614 at~~~d~~~i~iW~~~~~~~~~~  636 (809)
                      ++.+.-.        +.+|-|+.
T Consensus       384 ~s~~k~s--------~dr~~~~g  398 (441)
T d1qnia2         384 VVLSKFS--------KDRFLPVG  398 (441)
T ss_dssp             EEEESCC--------GGGSCCCS
T ss_pred             EECCCCC--------CCCCCCCC
T ss_conf             9657444--------25576788

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.82  E-value=2.5e-16  Score=104.77  Aligned_cols=151  Identities=17%  Similarity=0.152  Sum_probs=93.0

Q ss_pred             EEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECC----CCCCEEEEEEECCCCCEEEEEC---------CCCCEEEE
Q ss_conf             9998599989999967994999990089079999416----9975899998019998899990---------99809999
Q 003579          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS----MRGAVTALAFSSDGQPLLASGA---------SSGVISIW  252 (809)
Q Consensus       186 ~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~----~~~~V~~l~fs~dg~~~lasg~---------~dg~I~iw  252 (809)
                      .+.|.++++++..  .++.+.+||+.+++....+...    +...|.+..|+|||+ .|+.++         .++.+.+|
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCC-EEEEEECCCCEEEECCCCEEEEE
T ss_conf             7896899979997--59949999889997899970156443167654059989889-79999777100010467349999


Q ss_pred             ECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEEC-------C---------CCCCC
Q ss_conf             8898502224531334652799994599989998199947999920799995027943-------5---------88999
Q 003579          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-------S---------GHSAP  316 (809)
Q Consensus       253 dl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-------~---------~h~~~  316 (809)
                      |+++++... +. .+...+..+.|+|||..++... ++.+.+|+.....  ...+...       .         .....
T Consensus        98 d~~~~~~~~-l~-~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~--~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          98 DLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP--SYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             ETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC--CEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             ECCCCCCCC-CC-CCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCC--EEEEEECCCCCCCCCCCCCEEEEEEECCC
T ss_conf             898885131-24-6874231010146764135751-4641379889994--65321014777405354320112100477


Q ss_pred             CEEEEEECCCCEEEEEECCCC-EEEEEEE
Q ss_conf             966999039979999978997-8999963
Q 003579          317 PLCIRFYANGRHILSAGQDRA-FRLFSVI  344 (809)
Q Consensus       317 v~~i~~~~~g~~l~s~~~dg~-i~iwd~~  344 (809)
                      ...+.|+|||++|+....|.+ +..+.+.
T Consensus       173 ~~~~~wSPDGk~ia~~~~d~~~v~~~~~~  201 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFNDTEVPLIEYS  201 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             CCCCEECCCCCCCCEEEECCCCCCEEEEE
T ss_conf             65307999987220268637767069987

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.79  E-value=1.4e-18  Score=117.64  Aligned_cols=139  Identities=15%  Similarity=0.143  Sum_probs=86.1

Q ss_pred             ECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCE--
Q ss_conf             9689989999937992999978778300266075522456755647999991899899999-5767099997799853--
Q 003579          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDL--  508 (809)
Q Consensus       432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i~iwd~~~~~~--  508 (809)
                      ++++|+++.++ .++.+.++............        . .....++.++|+|++++++ ..++++.+||+.+...  
T Consensus       225 ~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IP--------v-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~  294 (441)
T d1qnia2         225 AVKAGNFKTIG-DSKVPVVDGRGESEFTRYIP--------V-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLF  294 (441)
T ss_dssp             HHHTTCCBCCT-TCCCCEEECSSSCSSEEEEC--------C-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHT
T ss_pred             EECCCCEEEEC-CCCCEEEECCCCCCEEEEEE--------C-CCCCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHH
T ss_conf             96699999969-99828998036870689971--------7-98866726899987899907759938999832244575


Q ss_pred             ----------EEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCC----------CEEEEEE-----ECCCCCEEEE
Q ss_conf             ----------45344187727999920798999994999299999578----------8589997-----2499981069
Q 003579          509 ----------KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA----------LRMVRKF-----EGHTDRITDF  563 (809)
Q Consensus       509 ----------~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~----------~~~~~~~-----~~h~~~I~~i  563 (809)
                                ....+..-......|.+++..+.+..-|..|..|++..          ...+..+     .||...+.+.
T Consensus       295 ~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~  374 (441)
T d1qnia2         295 EDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTE  374 (441)
T ss_dssp             TTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTT
T ss_pred             HCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             25688424799601455476652265785599852443168972354221332267776568645326689877524542


Q ss_pred             EECCCCCEEEEE---ECCCE
Q ss_conf             987899799999---18990
Q 003579          564 CFSEDGKWLLSS---GMDGS  580 (809)
Q Consensus       564 ~fspdg~~l~s~---s~Dg~  580 (809)
                      +++|||+||+++   |.|+.
T Consensus       375 t~~pdGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         375 SRDADGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             STTCCCCEEEEEESCCGGGS
T ss_pred             CCCCCCCEEEECCCCCCCCC
T ss_conf             23898848996574442557

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.72  E-value=1.1e-13  Score=89.79  Aligned_cols=30  Identities=13%  Similarity=0.234  Sum_probs=15.7

Q ss_pred             CEEEEEECC-CCCEEEEEE-CCCEEEEEECCC
Q ss_conf             810699878-997999991-899099998697
Q 003579          559 RITDFCFSE-DGKWLLSSG-MDGSLRIWDVIL  588 (809)
Q Consensus       559 ~I~~i~fsp-dg~~l~s~s-~Dg~I~iwd~~~  588 (809)
                      ...+++++| +|++|+.+. .++.|.+|++..
T Consensus       310 ~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCEEEECCCCCCEEEEEECCCCEEEEEEEEC
T ss_conf             86478964899999999967999499999828

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.67  E-value=9.7e-12  Score=78.79  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=44.1

Q ss_pred             CEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCEEE-EEE------ECCCEEEEEECC-CCCEEEEEEECCCEEE
Q ss_conf             8106998789979999918------9909999869763788-765------276358999767-9983899973797499
Q 003579          559 RITDFCFSEDGKWLLSSGM------DGSLRIWDVILARQID-AIH------VDVSITALSLSP-NMDVLATAHVDQNGVY  624 (809)
Q Consensus       559 ~I~~i~fspdg~~l~s~s~------Dg~I~iwd~~~~~~i~-~~~------~~~~v~~i~~sp-dg~~lat~~~d~~~i~  624 (809)
                      ....+.++|||++|+++..      ...|..|++.....+. ...      ......+++++| +|++|+.+..++..|.
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEE
T ss_conf             76316998999978997135787542279999856887144676766777679986478964899999999967999499


Q ss_pred             EEECCC
Q ss_conf             964475
Q 003579          625 LWVNRC  630 (809)
Q Consensus       625 iW~~~~  630 (809)
                      +|+.+.
T Consensus       336 v~~~~~  341 (365)
T d1jofa_         336 IYRWKD  341 (365)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
T ss_conf             999828

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.9e-11  Score=76.12  Aligned_cols=114  Identities=15%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             EECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCC---CCCEEEEEECCCCCEEEEEEC---------CCEEEEEEEEC
Q ss_conf             917999889999957780999968999169998289---997899998599989999967---------99499999008
Q 003579          145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSPALDVVAVGCS---------DGKIHVHNVRY  212 (809)
Q Consensus       145 ~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~I~~l~~sp~~~~la~g~~---------dg~i~iwd~~~  212 (809)
                      |.+++  ..+ .-..+|.+.+||+.+++....+...   ...+....+|||+++++....         .+.+.++|+.+
T Consensus        24 W~~~~--~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          24 WISDT--EFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             BSSSS--CBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EECCC--CEE-EEECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCC
T ss_conf             91798--489-992899699998789988998727644445532138989888699998451004760335289998568


Q ss_pred             CEEEEEEEC-CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEE
Q ss_conf             907999941-699758999980199988999909980999988985022245
Q 003579          213 DEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (809)
Q Consensus       213 ~~~~~~~~~-~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~  263 (809)
                      +........ ...+.+....|+|||+ .+|-.. ++.|.+.+..++......
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~-~iafv~-~~nl~~~~~~~~~~~~lt  150 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIF-ENNIYYCAHVGKQAIRVV  150 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTT-CEEEEE-TTEEEEESSSSSCCEEEE
T ss_pred             CCEEECCCCCCCCCCCCEEEECCCCC-EEEEEE-CCEEEEEECCCCCEEEEE
T ss_conf             84564157667764311002426785-699996-132999954899658971

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.55  E-value=9.5e-11  Score=73.18  Aligned_cols=59  Identities=14%  Similarity=0.155  Sum_probs=31.8

Q ss_pred             EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC---CCEEEEEE---CCCCCEEEEEEEC
Q ss_conf             106998789979999918990999986976378876527---63589997---6799838999737
Q 003579          560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD---VSITALSL---SPNMDVLATAHVD  619 (809)
Q Consensus       560 I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~---~~v~~i~~---spdg~~lat~~~d  619 (809)
                      ...+++++||++.++...++.|..++.. ++........   ...++++|   ++|++.|..++..
T Consensus       210 pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         210 IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf             7523787999999997489918998789-9789999637898882489970878878989999889

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.47  E-value=8.6e-10  Score=67.76  Aligned_cols=57  Identities=12%  Similarity=0.172  Sum_probs=26.9

Q ss_pred             EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC-CEEEEEECCCCCEEEEE
Q ss_conf             1069987899799999189909999869763788765276-35899976799838999
Q 003579          560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATA  616 (809)
Q Consensus       560 I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~i~~spdg~~lat~  616 (809)
                      ...+++..+|+..++....+.|.+||...++.+..+..+. .+++++|.|+++.|..+
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             CEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEE
T ss_conf             1025783478579998279999999699997999997999987899992898999999

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=9e-10  Score=67.63  Aligned_cols=50  Identities=12%  Similarity=0.025  Sum_probs=18.6

Q ss_pred             CEEEEEECCCCCEEEEEEC---CCEEEEEECCCCCEEEEEEECCCEEEEEECC
Q ss_conf             8106998789979999918---9909999869763788765276358999767
Q 003579          559 RITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (809)
Q Consensus       559 ~I~~i~fspdg~~l~s~s~---Dg~I~iwd~~~~~~i~~~~~~~~v~~i~~sp  608 (809)
                      ......|||||++|+..+.   ...+.++++..+...........+...+|||
T Consensus       215 ~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         215 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             CCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEECC
T ss_conf             54455898999999999817998479999999997799857998588378289

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-09  Score=67.38  Aligned_cols=106  Identities=14%  Similarity=0.068  Sum_probs=47.3

Q ss_pred             EECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCC--CCCEEEEEEECCCCCEEEEE--------CCCCCEEEEECCCC
Q ss_conf             985999899999679949999900890799994169--97589999801999889999--------09980999988985
Q 003579          188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLLASG--------ASSGVISIWNLEKR  257 (809)
Q Consensus       188 ~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~V~~l~fs~dg~~~lasg--------~~dg~I~iwdl~~~  257 (809)
                      .|.+++.++.. ..+|.+.+||+.+++....+....  ...+....|+||++.+++..        +..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEECCCCEEEE-ECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCC
T ss_conf             89179848999-28996999987899889987276444455321389898886999984510047603352899985688


Q ss_pred             EEEEEEE-CCCCCCEEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf             0222453-1334652799994599989998199947999
Q 003579          258 RLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMW  295 (809)
Q Consensus       258 ~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw  295 (809)
                      ....... ......+....|+|+|..++... ++.+.+.
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             CEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEE
T ss_conf             4564157667764311002426785699996-1329999

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.1e-09  Score=67.21  Aligned_cols=164  Identities=12%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC---CEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCC
Q ss_conf             09999689991699982899978999985999899999679---949999900890799994169975899998019998
Q 003579          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (809)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~  238 (809)
                      .|.+.|........... ....+.+.+|||||+.||.....   ..+.+.+...+..... ... .+......|+|+|+.
T Consensus        20 ~l~i~d~dG~~~~~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASF-PRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECC-SSCEEEEEECTTSSE
T ss_pred             EEEEECCCCCCCEEEEC-CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEE-EEE-ECCCCCCEECCCCCE
T ss_conf             99999289997679865-898426038878999899998152675134431136750677-642-024543024488986


Q ss_pred             EEEEECCCCCEEEEE--CCCCEEEEEEECCCCCCEEEEEEECCCC-EEEEECCCCCEEEEEEECCCCCCEEEEECCCCCC
Q ss_conf             899990998099998--8985022245313346527999945999-8999819994799992079999502794358899
Q 003579          239 LLASGASSGVISIWN--LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (809)
Q Consensus       239 ~lasg~~dg~I~iwd--l~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~  315 (809)
                      ++......+...++.  ..........  ..........+++++. .+++...++...+|..+........   ......
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~---~~~~~~  171 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR---ITWEGS  171 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---CCCSSS
T ss_pred             EEEEEECCCCCCEEECCCCCCCCEEEE--ECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEE---EECCCC
T ss_conf             467640278641000022212200001--014421145434554433000012687438654213310001---000122


Q ss_pred             CCEEEEEECCCCEEEEEE
Q ss_conf             996699903997999997
Q 003579          316 PPLCIRFYANGRHILSAG  333 (809)
Q Consensus       316 ~v~~i~~~~~g~~l~s~~  333 (809)
                      ......|+|+++.++..+
T Consensus       172 ~~~~~~~spdg~~~~~~~  189 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVS  189 (269)
T ss_dssp             EEEEEEECTTSSEEEEEE
T ss_pred             CCCCCCCCCCCCEEEEEE
T ss_conf             223432234543057786

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=3e-10  Score=70.36  Aligned_cols=239  Identities=7%  Similarity=-0.044  Sum_probs=0.0

Q ss_pred             CCCCCEEEEEECCCCEEEEEECC-CCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCE
Q ss_conf             89999669990399799999789-97899996305432120223577987520101433026841277512311466630
Q 003579          313 HSAPPLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (809)
Q Consensus       313 h~~~v~~i~~~~~g~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  391 (809)
                      +...+..+++.++|...++.... +.+..++............+.                                   
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------------------------   56 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-----------------------------------   56 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-----------------------------------
T ss_pred             CCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCC-----------------------------------
T ss_conf             769878899969999999971899889999389966897436986-----------------------------------


Q ss_pred             EEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf             38964299609999901246321542069999997599999689989999937992999978778300266075522456
Q 003579          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (809)
Q Consensus       392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  471 (809)
                                                       .....++++++|+..++...++.+.+++..+.......         
T Consensus        57 ---------------------------------~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~---------   94 (260)
T d1rwia_          57 ---------------------------------YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF---------   94 (260)
T ss_dssp             ---------------------------------CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC---------
T ss_pred             ---------------------------------CCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEE---------
T ss_conf             ---------------------------------68408999389988986310000355421120000001---------


Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEE
Q ss_conf             75564799999189989999957670999977998534534418-77279999207989999949992999995788589
Q 003579          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  550 (809)
Q Consensus       472 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~  550 (809)
                      .......+++++++++++++-..+..+..++............. .....+++.+++.++++...++.|..++.......
T Consensus        95 ~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~  174 (260)
T d1rwia_          95 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  174 (260)
T ss_dssp             CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             EEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEE
T ss_conf             00000000024553205750335553211232222012232036677520545489988641025643322234310012


Q ss_pred             EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC-EEEEEECCCCCEEEEEEECCCEEEEEECC
Q ss_conf             99724999810699878997999991899099998697637887652763-58999767998389997379749996447
Q 003579          551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       551 ~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~i~~spdg~~lat~~~d~~~i~iW~~~  629 (809)
                      ............+++.++|+++++....+.|..++.............-. ..+++++++|..+++-..+. .|...+..
T Consensus       175 ~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~-rI~~i~~~  253 (260)
T d1rwia_         175 VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND-RVVKLTSL  253 (260)
T ss_dssp             ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGT-EEEEECCC
T ss_pred             EEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEEEECCCC-EEEEEECC
T ss_conf             22101147876312310001343214899899996999769997069989817999908999999979999-89999599

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=2.4e-09  Score=65.27  Aligned_cols=69  Identities=17%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             CCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEEEECC---CEEEEEECCCCCEEEEEEECCCEEEEEECC
Q ss_conf             98106998789979999918-9909999869763788765276---358999767998389997379749996447
Q 003579          558 DRITDFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (809)
Q Consensus       558 ~~I~~i~fspdg~~l~s~s~-Dg~I~iwd~~~~~~i~~~~~~~---~v~~i~~spdg~~lat~~~d~~~i~iW~~~  629 (809)
                      .....+++.++|+.+++-.. ++.|.+++ ++|+.+..+....   ....+++.|+|.+++ +..+. .|++|.-.
T Consensus       200 ~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~-~v~~fr~~  272 (279)
T d1q7fa_         200 NYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDY-RLYIYRYV  272 (279)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTT-EEEEEECS
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCCCEEEEEEECCCCEEE-EECCC-EEEEEEEE
T ss_conf             48762323147869999789980899999-9999999996888889883799908991999-91899-69998722

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.38  E-value=3.3e-09  Score=64.42  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=29.5

Q ss_pred             EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC-------CEEEEEECCCCCEEEEEEE
Q ss_conf             1069987899799999189909999869763788765276-------3589997679983899973
Q 003579          560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALSLSPNMDVLATAHV  618 (809)
Q Consensus       560 I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-------~v~~i~~spdg~~lat~~~  618 (809)
                      ...+++..+|++.++....+.|.+++ ++|+.+..+..+.       .+++++|.+++..++++..
T Consensus       230 PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         230 PDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEEEECCCCCEEEEECCCCEEEEEC-CCCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECC
T ss_conf             03641738999999984899899997-999598899688757786750466778079988999857

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.38  E-value=3.4e-09  Score=64.40  Aligned_cols=56  Identities=18%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf             9999801999889999099809999889850222453133465279999459998999
Q 003579          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS  285 (809)
Q Consensus       228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  285 (809)
                      ..++|.++|+ +.++-...+.|..|+..++....... ........+++.+++.++++
T Consensus        43 EG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va   98 (319)
T d2dg1a1          43 EGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVC   98 (319)
T ss_dssp             EEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEE
T ss_pred             EECEECCCCC-EEEEECCCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEEEE
T ss_conf             7078999999-99997799999999899995999994-89987038999999999999

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.38  E-value=3.5e-09  Score=64.29  Aligned_cols=51  Identities=18%  Similarity=0.208  Sum_probs=18.3

Q ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCC
Q ss_conf             99999189989999957670999977998534534418-7727999920798
Q 003579          478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG  528 (809)
Q Consensus       478 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~  528 (809)
                      -+++++.++++.++....+.|.+|+-..+.....+... ...++++|.++++
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             EEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCC
T ss_conf             0257834785799982799999996999979999979999878999928989

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.37  E-value=4.3e-09  Score=63.78  Aligned_cols=109  Identities=16%  Similarity=0.138  Sum_probs=41.6

Q ss_pred             CEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCE
Q ss_conf             58999980199988999909980999988985022245313346527999945999899981999479999207999950
Q 003579          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR  305 (809)
Q Consensus       226 ~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~  305 (809)
                      .+..+++.+||+ ++++...++.|..|+.... .. .+. .....+.+++|.+++.++++...++.+..|+.....+...
T Consensus        29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~-~~-~~~-~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQ-IHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EE-EEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCCCEEECCCCC-EEEEECCCCEEEEEECCCC-EE-EEE-CCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEE
T ss_conf             847877999988-9999688998999908998-89-997-1799853689867788699832895378887101111012


Q ss_pred             EEEECCCCCCCCEEEEEECCCCEEEEEECCCCEE
Q ss_conf             2794358899996699903997999997899789
Q 003579          306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (809)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~  339 (809)
                      .+... .....+..+.+.++++++++.+.++.+.
T Consensus       105 ~~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1         105 TLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIW  137 (302)
T ss_dssp             EEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ECCCC-CCCCCCCEEEECCCCCEEEECCCCCCCE
T ss_conf             10235-7863221667715797875035655410

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=1e-08  Score=61.67  Aligned_cols=111  Identities=14%  Similarity=0.220  Sum_probs=43.1

Q ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC---CCEEEEEEEECCCEEEEEEC-CCEEEEEECCCCEEEE
Q ss_conf             4799999189989999957670999977998534534418---77279999207989999949-9929999957885899
Q 003579          476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVR  551 (809)
Q Consensus       476 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~-d~~I~i~d~~~~~~~~  551 (809)
                      ....+++++++..+++....+.|++|+.. ++.+..+...   .....+++.++++++++-.. +..|.+++. +++.+.
T Consensus       158 ~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~  235 (279)
T d1q7fa_         158 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  235 (279)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             CCCEEEECCCEEEEEEECCCCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC-CCCEEE
T ss_conf             66243201200178620135510023047-9444530113211487623231478699997899808999999-999999


Q ss_pred             EEECC--CCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf             97249--998106998789979999918990999986976
Q 003579          552 KFEGH--TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  589 (809)
Q Consensus       552 ~~~~h--~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~  589 (809)
                      .+...  ......+++.+||++++ ++.++.|++|.....
T Consensus       236 ~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         236 ALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EEECCCCCCCEEEEEEECCCCEEE-EECCCEEEEEEEEEE
T ss_conf             996888889883799908991999-918996999872203

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.14  E-value=7.3e-08  Score=56.81  Aligned_cols=139  Identities=11%  Similarity=0.026  Sum_probs=60.8

Q ss_pred             EEEEEECCCCCEEEEEEC----CCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEE-ECCCEEEEEECCCC----
Q ss_conf             799999189989999957----670999977998534534418772799992079899999-49992999995788----
Q 003579          477 VVGVACDSTNTLMISAGY----HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFDVVAL----  547 (809)
Q Consensus       477 v~~i~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~I~i~d~~~~----  547 (809)
                      ++.+.++++|++.++...    .+.-.+|.+..++.............++++++++.+..+ +..+.|+.+++...    
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~  184 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP  184 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB
T ss_pred             CEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCC
T ss_conf             01357979999988742643133330576622996899865068764024658776689851566324676453555532


Q ss_pred             ----EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC-EEEEEEC-CCCCEEEEE
Q ss_conf             ----58999724999810699878997999991899099998697637887652763-5899976-799838999
Q 003579          548 ----RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLS-PNMDVLATA  616 (809)
Q Consensus       548 ----~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~i~~s-pdg~~lat~  616 (809)
                          .....+.+..+....+++..+|++.++.-..+.|..|| ++|+.+..+..+.. +++++|- +|.+.|..+
T Consensus       185 ~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         185 TGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             SSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             CCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEEC-CCCCEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf             453578841675556663267869999895320788468856-99928668638998527989828999999999

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.89  E-value=7.8e-07  Score=51.00  Aligned_cols=81  Identities=12%  Similarity=0.090  Sum_probs=51.0

Q ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCEEE--EEECCCCC-EE
Q ss_conf             9299999578858999724999810699878997999991899099998697637887652763589--99767998-38
Q 003579          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD-VL  613 (809)
Q Consensus       537 ~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~--i~~spdg~-~l  613 (809)
                      |.+.-+|..+++.+-+..... +...=..+-.+..++.++.|+.++.+|..+|+.+-.++....+.+  +.|..+|+ |+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             617875787786670516889-8877607986998999779991999999988685799898994516779998999999


Q ss_pred             EEEEE
Q ss_conf             99973
Q 003579          614 ATAHV  618 (809)
Q Consensus       614 at~~~  618 (809)
                      +....
T Consensus       536 ~v~~G  540 (573)
T d1kb0a2         536 SVAVG  540 (573)
T ss_dssp             EEEEC
T ss_pred             EEEEC
T ss_conf             99937

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.87  E-value=9.4e-07  Score=50.52  Aligned_cols=42  Identities=17%  Similarity=0.322  Sum_probs=15.8

Q ss_pred             CCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCC
Q ss_conf             989999967994999990089079999416997589999801999
Q 003579          193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (809)
Q Consensus       193 ~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~  237 (809)
                      |+.++... +|.|.+.|+..++.. .+..+ .+.+...+|+|||+
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~-~~~~~~p~~SPDG~   53 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTR-KIVSN-LGVINNARFFPDGR   53 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEE-EEECS-SSEEEEEEECTTSS
T ss_pred             CCEEEEEE-CCCEEEEECCCCCEE-EEECC-CCCCCCEEECCCCC
T ss_conf             99999990-996899989999879-97669-98526779878999

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.80  E-value=1.7e-06  Score=49.06  Aligned_cols=70  Identities=19%  Similarity=0.124  Sum_probs=42.3

Q ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEECCCC----------CEEEEEEECCCEEEEE------ECCCCCEEEEEEECCCE
Q ss_conf             8106998789979999918990999986976----------3788765276358999------76799838999737974
Q 003579          559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILA----------RQIDAIHVDVSITALS------LSPNMDVLATAHVDQNG  622 (809)
Q Consensus       559 ~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~----------~~i~~~~~~~~v~~i~------~spdg~~lat~~~d~~~  622 (809)
                      .-...+|...|.-..|--.|..|.-|++...          ..++.+..|-.+-.+.      ..|+|++|++...=.  
T Consensus       330 gPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~s--  407 (459)
T d1fwxa2         330 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS--  407 (459)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC--
T ss_pred             CCCCCCCCCCCEEEEEEECCCEEEEEECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC--
T ss_conf             766203389842999861231699973440556644666773113543345788774576786788887899803434--


Q ss_pred             EEEEECCCCCCCCC
Q ss_conf             99964475567787
Q 003579          623 VYLWVNRCMFSGDS  636 (809)
Q Consensus       623 i~iW~~~~~~~~~~  636 (809)
                            +.+|-|+.
T Consensus       408 ------kdrfl~vg  415 (459)
T d1fwxa2         408 ------KDRFLNVG  415 (459)
T ss_dssp             ------TTSSCCCC
T ss_pred             ------CCCCCCCC
T ss_conf             ------34466788

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.76  E-value=2.3e-06  Score=48.36  Aligned_cols=83  Identities=11%  Similarity=0.058  Sum_probs=55.5

Q ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCEEE--EEECCCCC-EE
Q ss_conf             9299999578858999724999810699878997999991899099998697637887652763589--99767998-38
Q 003579          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD-VL  613 (809)
Q Consensus       537 ~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~--i~~spdg~-~l  613 (809)
                      +.+.-+|+.+++.+-+.... .+...-..+-.+.+++.++.|+.++.+|..+|+.+-.++....+.+  +.+..+|+ |+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCEEEEECCCC-CCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             64688707788373102578-88877405987998999778981999999998582799899995516779998999999


Q ss_pred             EEEEECC
Q ss_conf             9997379
Q 003579          614 ATAHVDQ  620 (809)
Q Consensus       614 at~~~d~  620 (809)
                      +.....+
T Consensus       517 ~v~aG~g  523 (560)
T d1kv9a2         517 AIMAGWG  523 (560)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
T ss_conf             9991778

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.64  E-value=5.3e-06  Score=46.29  Aligned_cols=84  Identities=12%  Similarity=0.015  Sum_probs=56.3

Q ss_pred             CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCEEE--EEECCCCC-E
Q ss_conf             99299999578858999724999810699878997999991899099998697637887652763589--99767998-3
Q 003579          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD-V  612 (809)
Q Consensus       536 d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~--i~~spdg~-~  612 (809)
                      .|.+.-+|+.+++.+-+........... .+-.+..++.++.|+.++-+|..+|+.+-.+.....+.+  +.+..||+ |
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCCEEEECCCCCCEEEECCCCCCCCCCE-EEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEE
T ss_conf             5617885367784642767899987560-596699799977899699999999868789989999651564898899999


Q ss_pred             EEEEEECC
Q ss_conf             89997379
Q 003579          613 LATAHVDQ  620 (809)
Q Consensus       613 lat~~~d~  620 (809)
                      ++.....+
T Consensus       522 i~v~~g~G  529 (571)
T d2ad6a1         522 IGSMYGVG  529 (571)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
T ss_conf             99990668

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.62  E-value=6.3e-06  Score=45.86  Aligned_cols=135  Identities=12%  Similarity=0.011  Sum_probs=75.6

Q ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf             99996899899999379929999787783002660755224567556479999918998999995767099997799853
Q 003579          429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL  508 (809)
Q Consensus       429 ~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  508 (809)
                      ..+++|....+++...+................          ........+...+..   ......|.|.-+|..+++.
T Consensus       390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~G~l~AiD~~TG~~  456 (571)
T d2ad6a1         390 VDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQ----------FFVGATLAMYPGPNG---PTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             BCEEETTTTEEEEEEECEEEEEEECCCCCCTTS----------CCCCEEEEEEECTTS---TTSCCCEEEEEECTTTCCE
T ss_pred             CCEECCCCCEEEEECCCCCCCCCCCCCCCCCCC----------CCCCCCEEECCCCCC---CCCCCCCCEEEECCCCCCE
T ss_conf             520778886289765534433430024566775----------321563033146677---6667756178853677846


Q ss_pred             EEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCC-CEEEEEECCCCC-EEEEEE
Q ss_conf             45344187727999920798999994999299999578858999724999-810699878997-999991
Q 003579          509 KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGK-WLLSSG  576 (809)
Q Consensus       509 ~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~-~I~~i~fspdg~-~l~s~s  576 (809)
                      +.+.....+..+-.....+.++++++.|+.++-+|.++++.+.++.-... .-.-+.|..||+ |++...
T Consensus       457 ~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         457 KWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             EEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEECCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEEE
T ss_conf             4276789998756059669979997789969999999986878998999965156489889999999990

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.56  E-value=9e-06  Score=44.96  Aligned_cols=53  Identities=15%  Similarity=0.086  Sum_probs=21.3

Q ss_pred             CCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEE
Q ss_conf             79949999900890799994169975899998019998899990998099998898502
Q 003579          201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (809)
Q Consensus       201 ~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~  259 (809)
                      ..+.|..||..+++.. .+..  ...+.++++.++|. +++ ++.+ .+..+|..+++.
T Consensus        38 ~~~~I~r~d~~~g~~~-~~~~--~~~~~~i~~~~dg~-l~v-a~~~-gl~~~d~~tg~~   90 (295)
T d2ghsa1          38 LERELHELHLASGRKT-VHAL--PFMGSALAKISDSK-QLI-ASDD-GLFLRDTATGVL   90 (295)
T ss_dssp             GGTEEEEEETTTTEEE-EEEC--SSCEEEEEEEETTE-EEE-EETT-EEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCEEE-EEEC--CCCCEEEEEECCCC-EEE-EEEC-CCEEEECCCCEE
T ss_conf             8999999989989599-9989--99817989965998-899-9737-638950464513

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.55  E-value=9.4e-06  Score=44.84  Aligned_cols=51  Identities=14%  Similarity=0.149  Sum_probs=25.9

Q ss_pred             EECC--CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf             9179--998899999577809999689991699982899978999985999899999
Q 003579          145 MHPD--TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG  199 (809)
Q Consensus       145 ~~p~--~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g  199 (809)
                      .+|+  +  ++++..+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.||..
T Consensus         6 ~sPdi~G--~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2           6 LNPDIHG--DRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             EEEEEET--TEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEE
T ss_pred             CCCCCCC--CEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEEE
T ss_conf             5888799--9999990-996899989999879-976699852677987899989999

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.49  E-value=1.4e-05  Score=43.83  Aligned_cols=85  Identities=11%  Similarity=0.101  Sum_probs=61.9

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-EEEEEECCCCC-EE
Q ss_conf             67099997799853453441877279999207989999949992999995788589997249998-10699878997-99
Q 003579          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WL  572 (809)
Q Consensus       495 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~-I~~i~fspdg~-~l  572 (809)
                      .|.+.-+|+.+++.+.......+...-.+.-.+.++++++.|+.++.+|.++++.+-++.-.... -.-+.+..||+ ||
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCCEEEEECCCCEEEEECCCCCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             66468870778837310257888877405987998999778981999999998582799899995516779998999999


Q ss_pred             EEEECCC
Q ss_conf             9991899
Q 003579          573 LSSGMDG  579 (809)
Q Consensus       573 ~s~s~Dg  579 (809)
                      +..+..|
T Consensus       517 ~v~aG~g  523 (560)
T d1kv9a2         517 AIMAGWG  523 (560)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
T ss_conf             9991778

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.40  E-value=2.4e-05  Score=42.59  Aligned_cols=82  Identities=9%  Similarity=-0.004  Sum_probs=52.5

Q ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC--EEEEEECCCCC-EE
Q ss_conf             9299999578858999724999810699878997999991899099998697637887652763--58999767998-38
Q 003579          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMD-VL  613 (809)
Q Consensus       537 ~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~i~~spdg~-~l  613 (809)
                      |.+.-||..+++.+-+... ..+...=..+..|..++.++.|+.++.+|..+|+.+-.++....  -.-+.+..+|+ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CEEEEEECCCCCEECCCCC-CCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             5389980788856233278-888744146866997999789995999999998483699899995407768998999999


Q ss_pred             EEEEEC
Q ss_conf             999737
Q 003579          614 ATAHVD  619 (809)
Q Consensus       614 at~~~d  619 (809)
                      +....-
T Consensus       532 av~~G~  537 (596)
T d1w6sa_         532 AIYYGV  537 (596)
T ss_dssp             EEEECC
T ss_pred             EEEECC
T ss_conf             999367

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.38  E-value=2.7e-05  Score=42.23  Aligned_cols=83  Identities=13%  Similarity=0.182  Sum_probs=58.4

Q ss_pred             CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCE--EEEEECCCCC-E
Q ss_conf             992999995788589997249998106998789979999918990999986976378876527635--8999767998-3
Q 003579          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSI--TALSLSPNMD-V  612 (809)
Q Consensus       536 d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v--~~i~~spdg~-~  612 (809)
                      .|.+.-+|+.+++++-+...+. ++..-..+..+..++.++.|+.++-+|..+|+.+-.++....+  .-+.+..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCEEEEECCCCCCEEEECCCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf             7759998078995873267799-974501697698699967999699999999868679889999621677999899999


Q ss_pred             EEEEEEC
Q ss_conf             8999737
Q 003579          613 LATAHVD  619 (809)
Q Consensus       613 lat~~~d  619 (809)
                      ++.....
T Consensus       544 v~i~ag~  550 (582)
T d1flga_         544 LGVTVGY  550 (582)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
T ss_conf             9999377

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.32  E-value=3.8e-05  Score=41.44  Aligned_cols=101  Identities=12%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             CEEEEEECCCCCEEEEEE-CCCEEEEEECCCC------------CEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEE
Q ss_conf             479999918998999995-7670999977998------------534534418772799992079899999499929999
Q 003579          476 EVVGVACDSTNTLMISAG-YHGDIKVWDFKGR------------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF  542 (809)
Q Consensus       476 ~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~------------~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~  542 (809)
                      ...++.++|||+++++++ .+.++.++|++.-            ......+........+|...|....+-.-|..|.-|
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw  355 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKW  355 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEE
T ss_conf             87733889999789993885895799982253566504688452179611357676620338984299986123169997


Q ss_pred             ECCCC----------EEEEEEECCCCC-----EEEEEECCCCCEEEEEE
Q ss_conf             95788----------589997249998-----10699878997999991
Q 003579          543 DVVAL----------RMVRKFEGHTDR-----ITDFCFSEDGKWLLSSG  576 (809)
Q Consensus       543 d~~~~----------~~~~~~~~h~~~-----I~~i~fspdg~~l~s~s  576 (809)
                      ++...          ..+.++.-|-.+     ...-...|||+||++..
T Consensus       356 ~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         356 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             3440556644666773113543345788774576786788887899803

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.25  E-value=5.6e-05  Score=40.45  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-EEEEEECCCCC-EE
Q ss_conf             67099997799853453441877279999207989999949992999995788589997249998-10699878997-99
Q 003579          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WL  572 (809)
Q Consensus       495 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~-I~~i~fspdg~-~l  572 (809)
                      .|.+.-+|+.+++.+.......+...-..+..+.++++++.|+.++.+|.++++.+-++.-.... -.-+.|..||+ |+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCEEEECCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             77599980789958732677999745016976986999679996999999998686798899996216779998999999


Q ss_pred             EEEE
Q ss_conf             9991
Q 003579          573 LSSG  576 (809)
Q Consensus       573 ~s~s  576 (809)
                      +..+
T Consensus       545 ~i~a  548 (582)
T d1flga_         545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9993

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.24  E-value=5.9e-05  Score=40.35  Aligned_cols=81  Identities=14%  Similarity=0.042  Sum_probs=59.2

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCC-CEEEEEECCCCC-EEE
Q ss_conf             709999779985345344187727999920798999994999299999578858999724999-810699878997-999
Q 003579          496 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGK-WLL  573 (809)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~-~I~~i~fspdg~-~l~  573 (809)
                      |.+.-||..+++.+.......+...-.++..+.+++.+..|+.++.+|.++++.+.++.-..+ .-.-+.|..||+ |++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CEEEEEECCCCCEECCCCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEE
T ss_conf             53899807888562332788887441468669979997899959999999984836998999954077689989999999


Q ss_pred             EEE
Q ss_conf             991
Q 003579          574 SSG  576 (809)
Q Consensus       574 s~s  576 (809)
                      ..+
T Consensus       533 v~~  535 (596)
T d1w6sa_         533 IYY  535 (596)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             993

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.12  E-value=0.0001  Score=38.94  Aligned_cols=12  Identities=25%  Similarity=0.307  Sum_probs=5.3

Q ss_pred             ECCCCCEEEEEE
Q ss_conf             767998389997
Q 003579          606 LSPNMDVLATAH  617 (809)
Q Consensus       606 ~spdg~~lat~~  617 (809)
                      ..+||+.++.++
T Consensus       351 l~~dG~v~v~GG  362 (387)
T d1k3ia3         351 LLPDGRVFNGGG  362 (387)
T ss_dssp             ECTTSCEEEEEC
T ss_pred             ECCCCEEEEEEC
T ss_conf             988999999969

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=0.0002  Score=37.35  Aligned_cols=62  Identities=19%  Similarity=0.324  Sum_probs=29.9

Q ss_pred             ECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCC
Q ss_conf             85999899999679949999900890799994169975899998019998899990998099998898
Q 003579          189 SSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (809)
Q Consensus       189 ~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~  256 (809)
                      .+|..+.+|.-+ ...+.++|+++.+.+..+...  .+|.--.|..+..  |+.-+ +..|+-|+++.
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~--e~VvfWkWis~~~--L~lVT-~taVYHW~~~g  131 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLNT--VALVT-DNAVYHWSMEG  131 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS--SCCCEEEESSSSE--EEEEC-SSEEEEEESSS
T ss_pred             CCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECC--CCCEEEEECCCCE--EEEEC-CCCEEEECCCC
T ss_conf             088875799962-886899844682211158768--8857999447988--99991-88169973569

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.92  E-value=0.00026  Score=36.70  Aligned_cols=141  Identities=6%  Similarity=-0.051  Sum_probs=82.1

Q ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf             99996899899999379929999787783002660755224567556479999918998999995767099997799853
Q 003579          429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL  508 (809)
Q Consensus       429 ~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  508 (809)
                      ..+++|+...+++...+....+................     ..........+. .+. -.....-|.+.-||..+++.
T Consensus       397 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~-~~~-p~~~~~~G~l~AiD~~tGk~  469 (573)
T d1kb0a2         397 PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKP-----QSGTGWNTAKFF-NAE-PPKSKPFGRLLAWDPVAQKA  469 (573)
T ss_dssp             CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTST-----TGGGTCCCCEEE-CSS-CCCSCCEEEEEEEETTTTEE
T ss_pred             CCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCC-CCCCCCCCCEEEECCCCCCE
T ss_conf             54208876169854111542531155532355778753-----103553222334-568-87778736178757877866


Q ss_pred             EEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCE-EEEEECCCCC-EEEEEE
Q ss_conf             4534418772799992079899999499929999957885899972499981-0699878997-999991
Q 003579          509 KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WLLSSG  576 (809)
Q Consensus       509 ~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I-~~i~fspdg~-~l~s~s  576 (809)
                      +.......+...-..+-.+.++++++.|+.++.+|.++++.+.++.-..+.. .-+.|..||+ |++..+
T Consensus       470 ~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         470 AWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV  539 (573)
T ss_dssp             EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEEECCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEEEE
T ss_conf             7051688988776079869989997799919999999886857998989945167799989999999993

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=0.00031  Score=36.28  Aligned_cols=117  Identities=13%  Similarity=0.147  Sum_probs=66.4

Q ss_pred             CCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCC
Q ss_conf             93999982788655300226973894341799917999889999957780999968999169998289997899998599
Q 003579          113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA  192 (809)
Q Consensus       113 g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~  192 (809)
                      ..+.+-|+.....    ...-...   .-++++||..  +.|+.-+ ...++++|+++.+.+..+.- ...|.--.|-.+
T Consensus        45 ~~VvIidl~n~~~----~~Rrpi~---AdsAIMhP~~--~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~  113 (327)
T d1utca2          45 AQVVIIDMNDPSN----PIRRPIS---ADSAIMNPAS--KVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL  113 (327)
T ss_dssp             EEEEEEETTSTTS----CEEEECC---CSEEEECSSS--SEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS
T ss_pred             CEEEEEECCCCCC----CEECCCC---HHHHHCCCCC--CEEEEEC-CCEEEEEEHHHHHHHCEEEC-CCCCEEEEECCC
T ss_conf             4399998899876----3314436---1665308887--5799962-88689984468221115876-888579994479


Q ss_pred             CCEEEEEECCCEEEEEEEECC-EEEEEEECCC---CCCEEEEEEECCCCCEEEE
Q ss_conf             989999967994999990089-0799994169---9758999980199988999
Q 003579          193 LDVVAVGCSDGKIHVHNVRYD-EELVTFTHSM---RGAVTALAFSSDGQPLLAS  242 (809)
Q Consensus       193 ~~~la~g~~dg~i~iwd~~~~-~~~~~~~~~~---~~~V~~l~fs~dg~~~las  242 (809)
                      . .|+..+. ..|.-|+++.. .+...|..+.   ...|.....+++.+.++++
T Consensus       114 ~-~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~  165 (327)
T d1utca2         114 N-TVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT  165 (327)
T ss_dssp             S-EEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEE
T ss_pred             C-EEEEECC-CCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEE
T ss_conf             8-8999918-81699735699985266232101248638998989999889999

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.87  E-value=0.00032  Score=36.17  Aligned_cols=71  Identities=15%  Similarity=0.126  Sum_probs=29.5

Q ss_pred             EEEECCCCCEEEEEECC-CEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCC------CCEEEEECCCC
Q ss_conf             99985999899999679-94999990089079999416997589999801999889999099------80999988985
Q 003579          186 SCVSSPALDVVAVGCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS------GVISIWNLEKR  257 (809)
Q Consensus       186 ~l~~sp~~~~la~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d------g~I~iwdl~~~  257 (809)
                      ..++.+++.+++.|+.+ ..+.+||..+..-...-.......-.+.+..+||+ +++.|+..      ..+.+||..+.
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             EEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC-EEEECCCCCCCCCCCEEEEECCCCC
T ss_conf             89994688689863688862167567557442156566421013035531782-6652136633354320566348889

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.69  E-value=0.00062  Score=34.55  Aligned_cols=36  Identities=3%  Similarity=0.038  Sum_probs=13.6

Q ss_pred             CEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf             09999889850222453133465279999459998999
Q 003579          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS  285 (809)
Q Consensus       248 ~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  285 (809)
                      .|+++|+.+++.+....  .......+.|.+++..|+.
T Consensus       152 ~l~v~Dl~tg~~~~~~i--~~~~~~~~~W~~D~~~~~Y  187 (430)
T d1qfma1         152 TIKFMKVDGAKELPDVL--ERVKFSCMAWTHDGKGMFY  187 (430)
T ss_dssp             EEEEEETTTTEEEEEEE--EEECSCCEEECTTSSEEEE
T ss_pred             EEEEECCCCCEECCCCC--CCCCCCCEEECCCCCEEEE
T ss_conf             46774167640314422--2432364178579989999

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.0013  Score=32.81  Aligned_cols=14  Identities=7%  Similarity=0.076  Sum_probs=5.0

Q ss_pred             CEEEEEECCCCEEE
Q ss_conf             92999995788589
Q 003579          537 LVIRLFDVVALRMV  550 (809)
Q Consensus       537 ~~I~i~d~~~~~~~  550 (809)
                      +.|...|..+++..
T Consensus       229 ~~I~~~~~~~g~~~  242 (263)
T d1npea_         229 NSVIAMDLAISKEM  242 (263)
T ss_dssp             TEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCCC
T ss_conf             97999989899510

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.0017  Score=32.12  Aligned_cols=10  Identities=10%  Similarity=0.202  Sum_probs=3.5

Q ss_pred             CCCEEEEECC
Q ss_conf             9809999889
Q 003579          246 SGVISIWNLE  255 (809)
Q Consensus       246 dg~I~iwdl~  255 (809)
                      .+.|.+.++.
T Consensus       100 ~~~I~~~~~d  109 (263)
T d1npea_         100 LDRIEVAKMD  109 (263)
T ss_dssp             TTEEEEEETT
T ss_pred             CCEEEEEECC
T ss_conf             8979988058

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.81  E-value=0.0063  Score=28.84  Aligned_cols=117  Identities=13%  Similarity=0.131  Sum_probs=63.1

Q ss_pred             CCCEEEEEECCCCCEEEEEEC-C----CEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECC----------
Q ss_conf             997899998599989999967-9----9499999008907999941699758999980199988999909----------
Q 003579          181 GSSISSCVSSPALDVVAVGCS-D----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS----------  245 (809)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~-d----g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~----------  245 (809)
                      .-.+...++||+++++|.+.. +    ..++++|+.+++.+......  .....++|.+|++.++.+.-.          
T Consensus       124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCCC--CCCCCEEECCCCCEEEEEEECCCCCCCCCCC
T ss_conf             41334258537898799995566672104677416764031442224--3236417857998999997626667654433


Q ss_pred             -----CCCEEEEECCCCEEEE--EEEC-CCCCCEEEEEEECCCCEEEEEC---CCCCEEEEEEEC
Q ss_conf             -----9809999889850222--4531-3346527999945999899981---999479999207
Q 003579          246 -----SGVISIWNLEKRRLQS--VIRE-AHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDT  299 (809)
Q Consensus       246 -----dg~I~iwdl~~~~~~~--~~~~-~h~~~v~~l~~~~~~~~l~s~s---~d~~i~iw~~~~  299 (809)
                           ...|..+.+.+.....  .... .....+..+..+.++.+++...   .+....+|..+.
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~  266 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL  266 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEG
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEEC
T ss_conf             34578633899988988653100223235772577530268762456876436776479999517

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0083  Score=28.14  Aligned_cols=250  Identities=12%  Similarity=0.013  Sum_probs=0.0

Q ss_pred             EEEEEECCEEEEEECCEEEEE-ECCCCCCEEEEEEE--CCEEEEEE-CCCCEEEEECCCCCCCCCEEEEEECCCCCCCEE
Q ss_conf             379998792999977836899-70454527999994--99899996-799399998278865530022697389434179
Q 003579           68 YTFAAYGNHIAVVKRAHQVAT-WSRHSAKVNLLLLF--GEHILSID-IDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC  143 (809)
Q Consensus        68 ~~~~a~g~~i~vw~~~~~~~~-~~~h~~~V~~i~~~--g~~l~s~~-~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~  143 (809)
                      .++.+.++.|+..+..+.... +......+.++.++  .+.|+-.+ ..+.|..-+++...........+..........
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~gl   82 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             EEEEECCCEEEEEECCCCCCEEEECCCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEE
T ss_conf             99997877189998999852664179985599999808999999999799799999357888761489984899985468


Q ss_pred             EEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE--CCCEEEEEEEECCEEEEEEEC
Q ss_conf             991799988999995778099996899916999828999789999859998999996--799499999008907999941
Q 003579          144 IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC--SDGKIHVHNVRYDEELVTFTH  221 (809)
Q Consensus       144 ~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~--~dg~i~iwd~~~~~~~~~~~~  221 (809)
                      ++.+.+. +...+-...+.|.+.++..................++..|...++....  ..+.|...++...........
T Consensus        83 AvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          83 AVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEECCC-EEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCC
T ss_conf             9864265-289995489999857648953788872799883369998003948871269973026863688834412004


Q ss_pred             CCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCC-CCEEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf             69975899998019998899990998099998898502224531334-65279999459998999819994799992079
Q 003579          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (809)
Q Consensus       222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~  300 (809)
                      . -.....+++.+.+..+..+-...+.|...++.............. ....++++. ++.+..+-..++.|...+....
T Consensus       162 ~-~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         162 N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             C-CCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCC
T ss_conf             5-3201699861335699995289679999989999779999389855664799998-9999999899996999999899


Q ss_pred             CCCCEEEEECCCCCCCCEEEEEEC
Q ss_conf             999502794358899996699903
Q 003579          301 DGDPRLLRFRSGHSAPPLCIRFYA  324 (809)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~  324 (809)
                          ............+..+....
T Consensus       240 ----~~~~~~~~~~~~p~~i~v~~  259 (266)
T d1ijqa1         240 ----SDVNLLAENLLSPEDMVLFH  259 (266)
T ss_dssp             ----CCCEEEECSCSCCCCEEEES
T ss_pred             ----CCEEEEECCCCCCEEEEEEC
T ss_conf             ----61599776899952899989

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.025  Score=25.41  Aligned_cols=27  Identities=11%  Similarity=0.340  Sum_probs=11.7

Q ss_pred             CEEEEEEECCEEEEEECCCCEEEEECCC
Q ss_conf             2799999499899996799399998278
Q 003579           95 KVNLLLLFGEHILSIDIDGNMFIWAFKG  122 (809)
Q Consensus        95 ~V~~i~~~g~~l~s~~~dg~i~vWd~~~  122 (809)
                      .|..++++++.|+... ++.+...+...
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~  114 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEE  114 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSS
T ss_pred             CEEEEEEECCEEEEEE-CCCEEEEEEEC
T ss_conf             8689986189899995-89789998510

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.70  E-value=0.026  Score=25.32  Aligned_cols=29  Identities=14%  Similarity=0.213  Sum_probs=12.3

Q ss_pred             CEEEEEECCCCCEEEEEE-CCCCEEEEECC
Q ss_conf             759999968998999993-79929999787
Q 003579          426 AVKACTISACGNFAVLGT-AGGWIERFNLQ  454 (809)
Q Consensus       426 ~v~~v~~s~~g~~l~~g~-~~g~i~i~~~~  454 (809)
                      ....+++++++++++++. ..+.|..|+++
T Consensus       207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         207 FANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEECCCCCEEEEEECCCCEEEEEEEC
T ss_conf             464348889999999996788939999968

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.14  E-value=0.041  Score=24.22  Aligned_cols=25  Identities=20%  Similarity=0.199  Sum_probs=12.7

Q ss_pred             EEEEECCCEEEEEECCC-CCEEEEEE
Q ss_conf             99991899099998697-63788765
Q 003579          572 LLSSGMDGSLRIWDVIL-ARQIDAIH  596 (809)
Q Consensus       572 l~s~s~Dg~I~iwd~~~-~~~i~~~~  596 (809)
                      |+|.-.+.+..+||... .+.+..|+
T Consensus       247 ivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         247 LASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEECCCCCCCCCEEE
T ss_conf             99737997699995678865332599

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.23  E-value=0.24  Score=19.92  Aligned_cols=40  Identities=18%  Similarity=0.162  Sum_probs=17.2

Q ss_pred             CCEEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEEEEEECCC
Q ss_conf             98106998789979-99991899099998697637887652763
Q 003579          558 DRITDFCFSEDGKW-LLSSGMDGSLRIWDVILARQIDAIHVDVS  600 (809)
Q Consensus       558 ~~I~~i~fspdg~~-l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~  600 (809)
                      +++.++++.|||.. .++....|  ++|. .++..+..+..+..
T Consensus       405 ~R~rdv~~gpDGs~lyv~~d~~G--~i~r-~~~~~~~~~~~p~~  445 (450)
T d1crua_         405 NRYRDVIASPDGNVLYVLTDTAG--NVQK-DDGSVTNTLENPGS  445 (450)
T ss_dssp             SCEEEEEECTTSSCEEEEECSSC--CEEC-TTSCEECCCSSTTC
T ss_pred             CCCEEEEECCCCCEEEEEECCCC--CEEC-CCCCEEEEECCCCE
T ss_conf             78647899899988999987899--8764-78845987079973