Citrus Sinensis ID: 003597

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------81
MEQSKLAAESHIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKNHSLGQFF
cccccccccccccccccccccccccccccccccEEcccHHHHccHHHHHHHHHHHcccccEEEEccccccccccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccccccccEEccccccEEEcccHHHHHHHHHHHHHccHHHcccHHHHccccccccHHHHHHccccEEEEEccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHcccccccHHHcccccccccccccHHccccccccccccEEcccccccccccccHHHHcccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEHHHHHccccccccc
cccccccccccccEEEEcccccHcccccccccccccccHHHHHcHHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccHHEHHHHHHccccccHccHHHHHHHHHHccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccHHccccccccccccccccHHEEEcccccccEEcEEEEEEEEcHEEEEcccccEEEEEHHccccccEEcccccHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHccHHHHHHccccEEEEEccccEEEEEcccHHHccccccccHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHccHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHccEEEEEEEEcccccccEEEEHcHHHHccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEccccccccccEEEEEcccccccEEccccccccccccccccccccccccccEEcccccccccccccccccccEEEccccEEEEcccHccccccccccc
MEQSKLAAESHIKEIsarwdpaeacrpiideapvfyptveEFEDTLGYIAKIRSKAEsfgicrivppsswtppcplkakniwenakfSTRIQQIDLLQNREPMRKKIRSRKRKRrrqsrmgstrrnanssseanaaetdekfgfqsgpdltlEGFQKYAQNFKECyfgmndskedvksdgfehkrlepsvvdieGEYWRiierptdevevyygadletgafasgfpkasslgtesdldqyamsgwnlnnlprlpgsvlafegsdisgvlVPWLYVGMCFssfcwhvedhhlyslnylhwgdpkiwygvpgshaSTLEKAMRKHLPDLFEEQPDLLHELVTQLspsvlkaegvpvyhvvqhsgefvltfprayhsgfncgfncaeavnvapvdwlAHGQQAVELYSEQHrktslshdklLFGSVQAAIKALWELSVLqkktpgnrkwkdacgkdgvLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCfydlhlsaagckcspdrfaclkhanifcsceidHRFVILRYSTDELNTLVEALEGGLDALKELASknfkwadcsdtdgglvkmdmesevfpmdcceqkesssssprvenivegngpccsrshvssevvqsepqrgtsglsaSHVSvnshnegndetQVMNKKAKVKHEVCIDLnmdvipdgnesklllsdSHGKEAIENLKAHLSACYQekvlcsgtvkeqdtmqvrsdcnssnshkdpnkdqpscsrviegtcsfdvkklfgvdlslphqqsklplvdflktdtingsnvrtsvtdqrfqknhslgqff
MEQSKLAAESHIKeisarwdpaeaCRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICrivppsswtppcPLKAKNIWENAKFSTRIqqidllqnrepmrkkirsrkrkrrrqsrmgstrrnanssseanaaetdekfgFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVksdgfehkrlepsvvdiegeyWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSvlqkktpgnrkwkdacgkdgvltKAIKTRVQMKkeglqklpsyfklQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSvnshnegndetqvmNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSdcnssnshkdpnkdqpscSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTdtingsnvrtsvtdqrfqknhslgqff
MEQSKLAAESHIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMrkkirsrkrkrrrqsrmgstrrnanssseanaaetDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKNHSLGQFF
**************ISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLL****************************************************LTLEGFQKYAQNFKECYFGM****************LEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFP*********DLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTL******HLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKM*********************************************************************************VKHEVCIDLNMDVIPD******L********AIENLKAHLSACYQEKVLCSGT******************************RVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTIN***********************
***************************IIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSK**********KRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGF*************QYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKK**************GVLT************************KMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKEL****************************************SPRVENIVE*******************************************************EVCIDL**********************************************************************************************************FLKTDTINGSNVR**************GQFF
************KEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMR**********************************DEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMD****************IVEGNGPCCS*************************SVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDT***********************SRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKNHSLGQFF
*********SHIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQS***********SSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDS*EDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCS******V********FPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEV*************************NDETQVMNKKAKVKHEVCIDLNMDVIP****SKL********EAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRF*****L**FF
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MEQSKLAAESHIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKNHSLGQFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query808 2.2.26 [Sep-21-2011]
Q8GUI6 954 Probable lysine-specific yes no 0.678 0.574 0.660 0.0
Q3UXZ9 1690 Lysine-specific demethyla yes no 0.455 0.217 0.425 2e-87
P29375 1690 Lysine-specific demethyla yes no 0.457 0.218 0.420 1e-86
Q9VMJ7 1838 Lysine-specific demethyla yes no 0.472 0.207 0.413 2e-86
Q5F3R2 1522 Lysine-specific demethyla yes no 0.485 0.257 0.414 4e-86
Q80Y84 1544 Lysine-specific demethyla no no 0.483 0.253 0.408 4e-85
Q6IQX0 1503 Lysine-specific demethyla no no 0.478 0.257 0.394 6e-85
Q9UGL1 1544 Lysine-specific demethyla no no 0.483 0.253 0.408 9e-85
Q30DN6 1545 Lysine-specific demethyla no no 0.496 0.259 0.398 9e-84
Q62240 1548 Lysine-specific demethyla no no 0.487 0.254 0.398 1e-82
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1 Back     alignment and function desciption
 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/554 (66%), Positives = 442/554 (79%), Gaps = 6/554 (1%)

Query: 14  EISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPP 73
           +I+ARW+P+EACRP++D+AP+FYPT E+F+D LGYI K+RSKAES+GICRIVPP +W PP
Sbjct: 38  KITARWNPSEACRPLVDDAPIFYPTNEDFDDPLGYIEKLRSKAESYGICRIVPPVAWRPP 97

Query: 74  CPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANS---S 130
           CPLK K IWEN+KF TRIQ IDLLQNREP++K  +++KRKRRR S++G TRR  +S   +
Sbjct: 98  CPLKEKKIWENSKFPTRIQFIDLLQNREPIKKSTKTKKRKRRRISKIGYTRRKRDSGCDT 157

Query: 131 SEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSV 190
           + + +++++ KFGFQ+GPD TLE FQKY + FKECYF    S++   S   E+K+ +P V
Sbjct: 158 ASSGSSDSEGKFGFQTGPDFTLEEFQKYDEYFKECYF---QSEDHPGSKASENKKFKPKV 214

Query: 191 VDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNL 250
            D+EGEYWRI+E+ TDEVEVYYGADLET  F SGFPK       S+ DQY+  GWNLNNL
Sbjct: 215 KDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQCGWNLNNL 274

Query: 251 PRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPG 310
            RLPGSVLAFE  DISGV+VPWLYVGMCFS+FCWHVEDHHLYS+NYLH GDPK+WYG+PG
Sbjct: 275 SRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPG 334

Query: 311 SHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPR 370
           +HA + E  M+K LPDLFEEQPDLLH+LVTQLSP +LK EGVPVY  VQ SGEF+LTFP+
Sbjct: 335 NHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPK 394

Query: 371 AYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKAL 430
           AYHSGFNCGFNCAEAVNVAPVDWL HGQ AVE YS+Q RK+SLSHDKLL G+   A   L
Sbjct: 395 AYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEATYCL 454

Query: 431 WELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLK 490
           WELS+ +KKTP   +WK  C +DG+LTKA+K RVQM++E L  L   F L+KME DFD K
Sbjct: 455 WELSLSKKKTPVIARWKRVCSEDGLLTKAVKKRVQMEEERLNHLQDGFSLRKMEGDFDNK 514

Query: 491 TERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEA 550
            ERECF CFYDLH+SA+ CKCSP+RFACL HA   CSCE   R++++R++ DEL  LV A
Sbjct: 515 RERECFLCFYDLHMSASSCKCSPNRFACLIHAKDLCSCESKDRYILIRHTLDELWALVRA 574

Query: 551 LEGGLDALKELASK 564
           LEG LDA+   ASK
Sbjct: 575 LEGDLDAIDLWASK 588
Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a higher activity for H3K4me3 and H3K4me2 than H3K4me1. No activity on H3K9me3/2, H3K36me3/2 and H3K27me3/2. Represses FT and TSF expression to inhibit the floral transition. Binds around the transcription start site of the FT locus. Involved in the DRM2-mediated maintenance of DNA methylation, but not required for the de novo DNA methylation. Required for demethylating histone H3K4me3 at the target of RNA silencing.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 Back     alignment and function description
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1 Back     alignment and function description
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 Back     alignment and function description
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 Back     alignment and function description
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 Back     alignment and function description
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
359483996 1118 PREDICTED: probable lysine-specific deme 0.981 0.709 0.618 0.0
449435562 1069 PREDICTED: probable lysine-specific deme 0.930 0.703 0.609 0.0
356558538 1048 PREDICTED: probable lysine-specific deme 0.962 0.742 0.589 0.0
356532896 1049 PREDICTED: probable lysine-specific deme 0.961 0.740 0.584 0.0
357519437 1042 Lysine-specific demethylase 5A [Medicago 0.948 0.735 0.574 0.0
356528420 923 PREDICTED: probable lysine-specific deme 0.720 0.630 0.683 0.0
356511043 948 PREDICTED: probable lysine-specific deme 0.693 0.590 0.705 0.0
255578025 935 transcription factor, putative [Ricinus 0.800 0.691 0.623 0.0
357442891 1000 Lysine-specific demethylase 5A [Medicago 0.856 0.692 0.606 0.0
296089238 951 unnamed protein product [Vitis vinifera] 0.763 0.648 0.673 0.0
>gi|359483996|ref|XP_002271515.2| PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/828 (61%), Positives = 608/828 (73%), Gaps = 35/828 (4%)

Query: 1   MEQSKLAAESHIKE------------------------ISARWDPAEACRPIIDEAPVFY 36
           MEQS L  E  IKE                        ISARW+P EACRP+I+EAPVFY
Sbjct: 33  MEQSSLEPEFQIKEDHSSKHALKNDSNIEYSGSPQNQKISARWNPTEACRPLIEEAPVFY 92

Query: 37  PTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDL 96
           PTVEEF+DTL YIA IR KAE +GICRIVPP SW PPCPL+ ++IW++ KF TR+QQ+DL
Sbjct: 93  PTVEEFQDTLNYIASIRPKAEPYGICRIVPPPSWVPPCPLREESIWKHLKFPTRMQQVDL 152

Query: 97  LQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSS-SEAN-AAETDEKFGFQSGPDLTLEG 154
           LQNREPMRKK R RKRKRRR SRMG+TRR++ S  SEAN  +++DEKFGF SG D TLE 
Sbjct: 153 LQNREPMRKKNRGRKRKRRRYSRMGTTRRHSRSEVSEANIVSDSDEKFGFHSGSDFTLEE 212

Query: 155 FQKYAQNFKECYFGMNDSKEDVKSDGFE-HKRLEPSVVDIEGEYWRIIERPTDEVEVYYG 213
           FQK+A +FKE YFG+ D+K+++ SDG E +KR EPSV DIEGEYWRI+E+PTDEVEVYYG
Sbjct: 213 FQKHADSFKEFYFGIKDAKDNLNSDGVECNKRWEPSVEDIEGEYWRIVEKPTDEVEVYYG 272

Query: 214 ADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWL 273
           ADLET AF SGFPKASSL +E+D DQY  SGWNLNN PRLPGSVL FE +DISGVLVPWL
Sbjct: 273 ADLETEAFVSGFPKASSLISENDSDQYVASGWNLNNFPRLPGSVLCFEQNDISGVLVPWL 332

Query: 274 YVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPD 333
           YVGMCFSSFCWHVEDHHLYSLNYLHWGD K+WYGVPGSHAS LE AMRKHLPDLFEEQP 
Sbjct: 333 YVGMCFSSFCWHVEDHHLYSLNYLHWGDSKVWYGVPGSHASALENAMRKHLPDLFEEQPY 392

Query: 334 LLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 393
           LL+ELVTQLSPSVLK+E VPVY  +Q+SGEF+LTFPRAYHSGFNCGFNCAEAVNVAPVDW
Sbjct: 393 LLNELVTQLSPSVLKSENVPVYRAIQNSGEFILTFPRAYHSGFNCGFNCAEAVNVAPVDW 452

Query: 394 LAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKD 453
           L+HGQ AVELYSEQ RKTS+SHDKLL  S Q A++AL + SVL K+   N  WK  CGKD
Sbjct: 453 LSHGQSAVELYSEQCRKTSISHDKLLLASAQKAVQALRDPSVLGKEDQVNLSWKSVCGKD 512

Query: 454 GVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSP 513
           G LTKA+KTRVQM++E L +LP  ++LQKME DFDLK ERECFSCFYDLHLSAA C+CSP
Sbjct: 513 GTLTKAVKTRVQMEEERLDRLPIGWRLQKMERDFDLKNERECFSCFYDLHLSAASCECSP 572

Query: 514 DRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSD 573
           D+FACLKHA++ CSCE + +FV+LRY+ D+L TLVE+LEGGLDA++  AS++      +D
Sbjct: 573 DQFACLKHASLICSCEPNRKFVLLRYTMDDLKTLVESLEGGLDAIEVWASEDLGLVS-AD 631

Query: 574 TDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRG 633
            D     +D E E+     C+QKES   S R +  ++ N PC S  HVSSEVVQSE Q+G
Sbjct: 632 KDACGAMLDQEREISGPIGCDQKESPPCSSRTQENLDINEPCSSSYHVSSEVVQSENQQG 691

Query: 634 TSGLSASHVSVNSHNEG-NDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKL-LLSDSHG 691
           T G   SH+  + HN+  N E      ++KV    CIDLN+D + D + S L  +S S  
Sbjct: 692 TFGFCVSHIRTDRHNDNLNKEGLTKGYESKVGQGFCIDLNLDTMSDEHVSGLQQVSYSCD 751

Query: 692 KEAIENL-KAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEG 750
            +A  N+ +  LS C +EKV C+   K+ D +++  DC+SS S+  PNK           
Sbjct: 752 SKATGNVAETFLSVCKEEKVNCADVPKQPDIVRLGGDCDSSVSYVLPNKHHFPYPVDNGN 811

Query: 751 TCSFDVKKLFGVDL--SLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQ 796
            C  D  KLFG D+  SLPH  S LP     KT+ +  S+V+   TDQ
Sbjct: 812 PCISDGSKLFGADILVSLPH-SSTLP-SSLPKTEILGSSDVKACATDQ 857

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449435562|ref|XP_004135564.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] gi|449508625|ref|XP_004163366.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356558538|ref|XP_003547562.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|356532896|ref|XP_003535005.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|357519437|ref|XP_003630007.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|355524029|gb|AET04483.1| Lysine-specific demethylase 5A [Medicago truncatula] Back     alignment and taxonomy information
>gi|356528420|ref|XP_003532801.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|356511043|ref|XP_003524241.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|255578025|ref|XP_002529883.1| transcription factor, putative [Ricinus communis] gi|223530610|gb|EEF32486.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357442891|ref|XP_003591723.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|358344555|ref|XP_003636354.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|355480771|gb|AES61974.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|355502289|gb|AES83492.1| Lysine-specific demethylase 5A [Medicago truncatula] Back     alignment and taxonomy information
>gi|296089238|emb|CBI39010.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
TAIR|locus:2128659 954 JMJ14 "JUMONJI 14" [Arabidopsi 0.792 0.670 0.571 1.8e-199
TAIR|locus:2196979819 JMJ18 "Jumonji domain-containi 0.685 0.676 0.626 8.2e-198
TAIR|locus:2025635 1209 PKDM7D [Arabidopsis thaliana ( 0.553 0.369 0.596 1.1e-185
TAIR|locus:2044697806 MEE27 "maternal effect embryo 0.699 0.700 0.565 4.5e-176
TAIR|locus:2064910708 AT2G38950 [Arabidopsis thalian 0.509 0.581 0.430 3.4e-113
ZFIN|ZDB-GENE-030131-5379 1483 kdm5ba "lysine (K)-specific de 0.325 0.177 0.501 8.2e-95
UNIPROTKB|B4E1Y0888 KDM5D "Lysine-specific demethy 0.329 0.299 0.485 8.9e-95
UNIPROTKB|F1NN75 1696 KDM5A "Uncharacterized protein 0.330 0.157 0.515 1.7e-94
FB|FBgn0031759 1838 lid "little imaginal discs" [D 0.329 0.144 0.508 6.2e-92
UNIPROTKB|F1RUI7 1516 KDM5C "Lysine-specific demethy 0.441 0.235 0.412 1.3e-91
TAIR|locus:2128659 JMJ14 "JUMONJI 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1931 (684.8 bits), Expect = 1.8e-199, P = 1.8e-199
 Identities = 375/656 (57%), Positives = 453/656 (69%)

Query:    14 EISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPP 73
             +I+ARW+P+EACRP++D+AP+FYPT E+F+D LGYI K+RSKAES+GICRIVPP +W PP
Sbjct:    38 KITARWNPSEACRPLVDDAPIFYPTNEDFDDPLGYIEKLRSKAESYGICRIVPPVAWRPP 97

Query:    74 CPLKAKNIWENAKFSTRIQQIDLLQNREPMXXXXXXXXXXXXXXXXXXXXXXXXXX---X 130
             CPLK K IWEN+KF TRIQ IDLLQNREP+                              
Sbjct:    98 CPLKEKKIWENSKFPTRIQFIDLLQNREPIKKSTKTKKRKRRRISKIGYTRRKRDSGCDT 157

Query:   131 XXXXXXXXDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSV 190
                     + KFGFQ+GPD TLE FQKY + FKECYF    S++   S   E+K+ +P V
Sbjct:   158 ASSGSSDSEGKFGFQTGPDFTLEEFQKYDEYFKECYF---QSEDHPGSKASENKKFKPKV 214

Query:   191 VDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNL 250
              D+EGEYWRI+E+ TDEVEVYYGADLET  F SGFPK       S+ DQY+  GWNLNNL
Sbjct:   215 KDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQCGWNLNNL 274

Query:   251 PRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPG 310
              RLPGSVLAFE  DISGV+VPWLYVGMCFS+FCWHVEDHHLYS+NYLH GDPK+WYG+PG
Sbjct:   275 SRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPG 334

Query:   311 SHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPR 370
             +HA + E  M+K LPDLFEEQPDLLH+LVTQLSP +LK EGVPVY  VQ SGEF+LTFP+
Sbjct:   335 NHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPK 394

Query:   371 AYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKAL 430
             AYHSGFNCGFNCAEAVNVAPVDWL HGQ AVE YS+Q RK+SLSHDKLL G+   A   L
Sbjct:   395 AYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEATYCL 454

Query:   431 WELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLK 490
             WELS+ +KKTP   +WK  C +DG+LTKA+K RVQM++E L  L   F L+KME DFD K
Sbjct:   455 WELSLSKKKTPVIARWKRVCSEDGLLTKAVKKRVQMEEERLNHLQDGFSLRKMEGDFDNK 514

Query:   491 TERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEA 550
              ERECF CFYDLH+SA+ CKCSP+RFACL HA   CSCE   R++++R++ DEL  LV A
Sbjct:   515 RERECFLCFYDLHMSASSCKCSPNRFACLIHAKDLCSCESKDRYILIRHTLDELWALVRA 574

Query:   551 LEGGLDALKELASKNFKWADCSDTDGGLVKMDME-SEVFPMDCCEQKESSSSSPRVENIV 609
             LEG LDA+   ASK      C D          E + +    C + + SS    R +N +
Sbjct:   575 LEGDLDAIDLWASK------CRDQYPSQHPRAREYAYLKSAPCIKSRGSSKVQQREQNNL 628

Query:   610 EGNGPCCSRSHVSSEVVQSEPQRGTSGLSA-SHVSVNSHNEG-NDETQVMNKKAKV 663
             +           S++ VQ + Q G S ++   H S  +H  G  D++ V + K  V
Sbjct:   629 QLVSERLQSDLTSNKEVQLK-QDGDSDVNRHGHESERNHVHGITDKSAVTDVKLGV 683
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0032453 "histone demethylase activity (H3-K4 specific)" evidence=IDA
GO:0048573 "photoperiodism, flowering" evidence=IMP
GO:0009910 "negative regulation of flower development" evidence=IMP
GO:0034720 "histone H3-K4 demethylation" evidence=IMP
GO:0010216 "maintenance of DNA methylation" evidence=IMP
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2196979 JMJ18 "Jumonji domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025635 PKDM7D [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044697 MEE27 "maternal effect embryo arrest 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064910 AT2G38950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5379 kdm5ba "lysine (K)-specific demethylase 5Ba" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B4E1Y0 KDM5D "Lysine-specific demethylase 5D" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NN75 KDM5A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0031759 lid "little imaginal discs" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUI7 KDM5C "Lysine-specific demethylase 5C" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
JMJ905
jumonji domain protein (753 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.170.78.1
hypothetical protein (548 aa)
      • 0.700

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 2e-54
smart0054542 smart00545, JmjN, Small domain found in the jumonj 3e-19
pfam0292854 pfam02928, zf-C5HC2, C5HC2 zinc finger 8e-17
pfam0237534 pfam02375, JmjN, jmjN domain 3e-15
smart0055858 smart00558, JmjC, A domain family that is part of 2e-14
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score =  182 bits (465), Expect = 2e-54
 Identities = 64/117 (54%), Positives = 75/117 (64%), Gaps = 3/117 (2%)

Query: 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQ 331
           WLY+GM  S+  WH+ED  LYS+NYLH+G PK+WY +P  +A   EK + KH      EQ
Sbjct: 1   WLYMGMPGSTTPWHIEDQGLYSINYLHFGGPKVWYIIPSEYAEKFEKVLSKHN---GGEQ 57

Query: 332 PDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV 388
           PDLL  L T +SP  L   G+PVY  VQ  GEFV TFP  YH  FN GFN AEAVN 
Sbjct: 58  PDLLLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|128818 smart00545, JmjN, Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>gnl|CDD|217292 pfam02928, zf-C5HC2, C5HC2 zinc finger Back     alignment and domain information
>gnl|CDD|190295 pfam02375, JmjN, jmjN domain Back     alignment and domain information
>gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 808
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 100.0
KOG0958690 consensus DNA damage-responsive repressor GIS1/RPH 100.0
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.98
smart0054542 JmjN Small domain found in the jumonji family of t 99.78
PF0237534 JmjN: jmjN domain; InterPro: IPR003349 Jumonji pro 99.6
PF0292854 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Z 99.56
smart0055857 JmjC A domain family that is part of the cupin met 99.29
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 98.36
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 96.76
KOG2131427 consensus Uncharacterized conserved protein, conta 96.47
KOG1356889 consensus Putative transcription factor 5qNCA, con 94.45
KOG2130407 consensus Phosphatidylserine-specific receptor Ptd 93.71
PF08007319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 89.03
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.1e-74  Score=688.43  Aligned_cols=538  Identities=43%  Similarity=0.697  Sum_probs=441.1

Q ss_pred             cccccccccCCCccCCCCCCCCCccCCCHHhhhCHHHHHHHHHHhhhhcCceeecCCCCCCCCCCCcccccccccccccc
Q 003597           11 HIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTR   90 (808)
Q Consensus        11 ~~~~v~~~~~P~~~~~~~i~e~PVF~PT~EEF~Dpl~YI~kI~~~aekyGIcKIVPP~~W~Pp~~l~~~~i~~~~kF~tr   90 (808)
                      ...++...+.+..+.+......+.+.+....|.|...|+..++..++.+|+|.++||..|++++++..+..|...+|.++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (904)
T KOG1246|consen   69 TLEVDFYSDLTELAKRVISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQR  148 (904)
T ss_pred             ccccchhhhhhhhhhcccccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCc
Confidence            34455556666777777888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             -ccchhcccccccchhhhh------h-hhhhhccccccccccCCC-CC-Cc---cccccccccccccccCC-CCCHHHHH
Q 003597           91 -IQQIDLLQNREPMRKKIR------S-RKRKRRRQSRMGSTRRNA-NS-SS---EANAAETDEKFGFQSGP-DLTLEGFQ  156 (808)
Q Consensus        91 -iQ~v~~Lq~r~p~~k~~~------~-~k~k~~~~~~~~~~~r~~-~s-~s---~~~~~~~~e~fgF~~G~-~~Tl~eF~  156 (808)
                       +|.++..+.+...+....      + .+..+......+..+... .- +.   ........+.|||..|. .||+..|+
T Consensus       149 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~  228 (904)
T KOG1246|consen  149 EVEFIDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFE  228 (904)
T ss_pred             ccccccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhh
Confidence             888776665544433321      0 111111111111111000 00 00   00123346889998876 99999999


Q ss_pred             HHHHHHHHhhhCCCCCCCCcccCccccccCCCCHHHHHHHhhhhccCCCCceeeeecCCCCCCCcCCCCCCCCCCCCC-C
Q 003597          157 KYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTE-S  235 (808)
Q Consensus       157 k~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ps~e~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFp~~~~~~~~-~  235 (808)
                      ++|+.|+..||.......             ++.+++|++||++|......++|+||+|+.+..+|||||........ +
T Consensus       229 ~~~~~~~~~~~~~~~~~~-------------~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~  295 (904)
T KOG1246|consen  229 EYADNFKKDYFPKSKNSP-------------DSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGS  295 (904)
T ss_pred             hHhhhhhccccccccCCC-------------CchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCc
Confidence            999999999998765432             33789999999999999889999999999999999999987654333 4


Q ss_pred             chhhhhccCcccCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHH
Q 003597          236 DLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST  315 (808)
Q Consensus       236 ~~~~y~~~~WNLnnLp~~~gSLL~~~~~~I~GVntP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a~k  315 (808)
                      ..++|..++|||+++|++++|+|+|.+.+|+|+++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++
T Consensus       296 ~~~~y~~s~wnL~~i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~  375 (904)
T KOG1246|consen  296 EAEKYSNSGWNLNNIPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEK  375 (904)
T ss_pred             chhhhccCcccccccccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHH
Confidence            66899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchhhhcCchhhhhcccccChhhHhhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeecccccchhh
Q 003597          316 LEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA  395 (808)
Q Consensus       316 FE~l~k~~~p~~~~~~pd~L~h~~t~isP~~L~k~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~  395 (808)
                      ||+++++..|+++..+|++++.+.++++|..|..+|||+++++|+|||||||||++||+||++|||++|+|||||.+||+
T Consensus       376 ~e~~~~~~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~  455 (904)
T KOG1246|consen  376 FEKAMNKLSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLP  455 (904)
T ss_pred             HHHHHHhhCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhhhh-ccCCCCcchhhhcccchhhHHHHHHHHHHHHhhcccC
Q 003597          396 HGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQ-KKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKL  474 (808)
Q Consensus       396 ~g~~a~e~y~~~~r~~~fs~d~LL~~~A~~~~~~l~el~l~~-k~~~~~~~~~~~c~~~~il~~~~k~r~~~e~~~~~~l  474 (808)
                      +|+.++++|+...+.++|||++|++.+|...+...+.+.+.. ++......|...+...+.....+..+   ++...+.+
T Consensus       456 ~gr~~~~~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  532 (904)
T KOG1246|consen  456 VGRGAAEAYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLESL  532 (904)
T ss_pred             HHHHHHHHHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHhc
Confidence            999999999999999999999999999998776555443322 11112223333333333322222111   11111111


Q ss_pred             chhhhhhhcccccCCccccccccccccchhccccccccCCccccccchhhhcCCCCCceEEEEecCHHHHHHHHHHHHhc
Q 003597          475 PSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGG  554 (808)
Q Consensus       475 ~~~~~~~k~~~~~d~~~er~C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~~lCsC~~~~~~LlyRYt~~EL~~lv~~le~~  554 (808)
                      +            |+..+++|..|+++||++++.|+|.+.+..||.|..++|+|....++++|||++++|..++.+++++
T Consensus       533 ~------------~~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~  600 (904)
T KOG1246|consen  533 P------------DDMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLH  600 (904)
T ss_pred             c------------chhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhh
Confidence            0            2223899999999999999999999899999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhhccCCCCC
Q 003597          555 LDALKELASKNFKWADCSDTDG  576 (808)
Q Consensus       555 ~~~~~~W~~~~~~~l~~~~~~~  576 (808)
                      ...+..|..++.+++.......
T Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~  622 (904)
T KOG1246|consen  601 ELSKLPWFGRVDGALPSLGFRG  622 (904)
T ss_pred             hhhcchhhhhhhhhhcccccCC
Confidence            9999999999999987665555

>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>smart00545 JmjN Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 1e-36
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 2e-36
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 2e-36
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 2e-36
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 2e-36
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 2e-36
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 3e-36
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 3e-36
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 4e-36
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 5e-36
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 7e-36
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 7e-31
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 93/157 (59%)
Query: 245 WNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKI 304
           WN+  L  +   V    G  I GV  P+LY GM  +SF WH ED  LYS+NYLH+G+PK 
Sbjct: 170 WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKS 229
Query: 305 WYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEF 364
           WY VP  H   LE+  +   P   +     L   +T +SP +LK  G+P   V Q +GEF
Sbjct: 230 WYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEF 289
Query: 365 VLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAV 401
           ++TFP  YH+GFN GFNCAE+ N A   W+ +G+QAV
Sbjct: 290 MITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 326
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
3opt_A373 DNA damage-responsive transcriptional repressor R; 5e-92
3dxt_A354 JMJC domain-containing histone demethylation PROT; 6e-87
2ox0_A381 JMJC domain-containing histone demethylation PROT; 4e-83
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 9e-77
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 9e-75
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 1e-61
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
3kv5_D488 JMJC domain-containing histone demethylation prote 2e-04
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
 Score =  293 bits (749), Expect = 5e-92
 Identities = 98/405 (24%), Positives = 170/405 (41%), Gaps = 49/405 (12%)

Query: 24  ACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLK-AKNIW 82
           A   I+   PVF PT E+FED   Y   I       G+ +++PP  W     L  +    
Sbjct: 6   APSEIVGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPYSAETL 65

Query: 83  ENAKFSTRIQQ-------IDLLQNREPMRKKIRSRKRKRRRQSRMGSTRRNANSSSEANA 135
           +  K  + IQQ       + ++QN E  +     + +   +        +   +S + + 
Sbjct: 66  QKIKIKSPIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSV 125

Query: 136 AETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEG 195
           +++ +           ++ F+++   +        +                  +  +E 
Sbjct: 126 SKSTKLKLKNFESSFNIDDFEQFRTEYTIDLSDFQN---------------TERLKFLEE 170

Query: 196 EYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPG 255
            YW+ +   T      YGAD     F                    ++ WN+  LP    
Sbjct: 171 YYWKTLNFTT----PMYGADTPGSIF-----------------PEGLNVWNVAKLP---- 205

Query: 256 SVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315
           ++L    + + GV   +LY G+  +SF WH+ED  LYS+NY+H+G PK WY +P      
Sbjct: 206 NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFK 265

Query: 316 LEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSG 375
             K M++  P+  +  P+ L   +   SP +L+  G+    +V H GEF++T+P  YH+G
Sbjct: 266 FYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAG 325

Query: 376 FNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLF 420
           FN G+N AE+VN A  +WL  G++A + +        +   KL  
Sbjct: 326 FNYGYNLAESVNFALEEWLPIGKKAGKCHCISDS-VEIDVKKLAK 369
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query808
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 98.05
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 97.85
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=1.5e-05  Score=50.77  Aligned_cols=120  Identities=17%  Similarity=0.102  Sum_probs=81.8

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCHHHHC----CCHHHHHCCCCCCH
Q ss_conf             31259841466643430068641212454408851089707520899999999525311303----91011000025690
Q 003597          269 LVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEE----QPDLLHELVTQLSP  344 (808)
Q Consensus       269 ttP~LYiGM~fStf~WH~ED~~LySINYlH~GapK~WY~VP~~~aekFE~llk~~~p~~f~~----~pd~L~hl~~~isP  344 (808)
                      ...++++|..++.+.+|.+.++  .++.+..| .|.|+..|+.+...+       ++.....    .+.-+.....   .
T Consensus       122 ~~~~~~~~~~g~~~~~H~D~~d--~f~~Qv~G-~K~W~L~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~  188 (319)
T d1vrba1         122 SKAIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNP-------MQHYDLSEAPYYPDDLQSYWK---G  188 (319)
T ss_dssp             EEEEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSC-------SSCEECC----CCHHHHHHCC---S
T ss_pred             CEEEEEECCCCCCCCCCCCCCC--EEEEEECC-EEEEEEECCCCCCCC-------CCCCCCCCCCCCCCCCCCCCH---H
T ss_conf             4169995689887764567875--06886223-499999688555656-------567663347656243344211---2


Q ss_pred             HHHHHCCCCEEEEECCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             327517998067511799399974884103530553203432245531564589999
Q 003597          345 SVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAV  401 (808)
Q Consensus       345 ~~L~~~GIpv~r~vQ~pGEFVVTfP~aYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~  401 (808)
                      ......+.+.+.++++|||.++.-+|-+|.+.+.|-+++.+++|..++|.++-..++
T Consensus       189 ~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~~~~~  245 (319)
T d1vrba1         189 DPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAAL  245 (319)
T ss_dssp             CCCCTTCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHHHHHH
T ss_pred             HCHHHHCCCCEEEEECCCCEEEECCCCEEEEEECCCEEEEEEEECCCCHHHHHHHHH
T ss_conf             150341475279997798789827995488575587279999732797899999999
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure