Citrus Sinensis ID: 003639

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800------
Protein Sequence
MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFFKSSEEDKPDIPARQPLFLLEKV
Secondary Structure (PSIPRED)
cccccEEEcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccEEEccccEEEEccHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEEEEEccccccccccccccccEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHccccccEEEEcccccccccccccccccccccEEcccccEEEcccccccHHHHHHHcccccccccccEEEEEEcccccccccccccccccccEEEcccccccccccEEEcccccccccccccccccccEEccccccccccccccccccccccccEEEEEcccccEEEEccccccccccccccccEEEEEccccccEEccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEccccccEEccccccccccccccccccccEEEEEccccccEEcccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHEEcHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccEEEHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEEEcccccccccccccccccEEEEEcccccccEcccccHHHHcccccEEEEEcccccccccccccccccccEEEEcccccccccccccccccEEEEEcccccccccccHcccccccEEEEccccccccccHHHHHccccccEEEEccccccEcccccccccccccHHHHcccccccccccccccccccHHHcccccHHHcccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccccccccccccccEEEEEcccccHEEccccccccccccccccccEEEEcccccccEccccccccccccccEEEEEcccHHHHHcccccHHcccccccEEEEcccccccEcccccccccHccccccccccccEEEEccccccccccccccccccccccccccEEEEccccccccccHHHccccccccccEEEEccccccEEccccccccccccccccccEEEEcccccccccccHHHHcccccccEEEEcccccHHEccccccccccccccccccccEEEEEcccccHHHccccccccccccccEEEEccccccccccccccccccccEEEccccccHHHHHHHccc
Coil and Loop (DISEMBL)
MGSQKNFSIDILNEEEAWRLFKLVADdhvenrefKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQElrmpsevnfegvpaeaySTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSClllegdsnqelsmhDVIRDVAISIACREQHAVLVRnedvwewpddialkecyaislrgcsihelpeglecprleflhinpkdslfdinnpcnfftgmrkLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWgsgivklpeelghltklrqldlsncfklkviapnVISRLVRLEELYMSncfvewddegpnseRINARLDElmhlprlatlevhvkndnvlpegFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHlhvqnnpdfmcivdskervplddafpileslnlynLIKLERICQDrlsvqsfnelKTIRVEHCDQLSNIFLLSAakclprlerIAVINCRNIQEifavdgeydaidhqriefGQLRtlclgslpeltsfccgvkknrqaqgmhetcsNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNiekiwpnqlpVAMFLCFQNLTrlilrkcpklKYIFSAsmlgsfehLQHLEIRHCKGLQEIIskegaddhvppnfVFLQVTTLILlglpelkclypgmhtsewpalklldvsacdqvtVFDSELFSFfksseedkpdiparqplfllekv
Flexible Loop (DISEMBL)
MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCfvewddegpNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSffksseedkpdiparqplfllekv
Low Complexity Region (SEG)
MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQllllpssidllvnlQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVfdselfsffksseedkPDIPARQPLFLLEKV
Disordered region (IsUnstruct)
*******SIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGP**ERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKN*******************KLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFF**********************
Disordered Region (DISOPRED)
**SQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPS**NFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKV*******RLVRLEELYMSNCFVEWDDEGPN********DELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDI*SALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIIS***********FVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSE**************IPARQPLFLLEKV
Disordered Region (DISEMBL)
MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKN*****************EDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFFKSSEEDKPDIPARQPLFLLEKV
Disordered Region (DISPRO)
*****NFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFFKSSEEDKPDIPARQPLFLLEK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKxxxxxxxxxxxxxxxxxxxxxCLLLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFFKSSEEDKPDIPARQPLFLLEKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	806	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.725	0.593	0.260	4e-41
O81825	919	Probable disease resistan	no	no	0.732	0.642	0.275	5e-41
Q42484	909	Disease resistance protei	no	no	0.656	0.581	0.270	2e-39
Q9FG91	848	Probable disease resistan	no	no	0.645	0.613	0.263	9e-25
Q9C8K0	854	Probable disease resistan	no	no	0.590	0.557	0.249	4e-22
Q9LVT4	843	Probable disease resistan	no	no	0.627	0.600	0.245	3e-21
Q9FLB4	874	Putative disease resistan	no	no	0.374	0.345	0.281	1e-19
O64973	889	Disease resistance protei	no	no	0.643	0.583	0.270	4e-19
Q8RXS5	888	Probable disease resistan	no	no	0.346	0.314	0.310	3e-18
Q9FG90	862	Probable disease resistan	no	no	0.383	0.358	0.28	4e-18

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  170 bits (431), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 166/637 (26%), Positives = 296/637 (46%), Gaps = 52/637 (8%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
           M +  +  +D L EE+AW LF   A D V +   +  A  V+Q C GLP+A+ T+  A+R
Sbjct: 291 MKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMR 350

Query: 61  N-KSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN-- 117
             K+V  W   L +L   S    + +  + +  ++LS+  L+ ++ K  F+LC+L     
Sbjct: 351 GKKNVKLWNHVLSKLS-KSVPWIKSIEEKIFQPLKLSYDFLE-DKAKFCFLLCALFPEDY 408

Query: 118 SICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRD 177
           SI  + + +  M  G ++++   ED+ N+    V  L+D CLL +GD    + MHDV+RD
Sbjct: 409 SIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRD 468

Query: 178 VAISIACREQ---HAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLE--CPRLE 232
            AI I    Q   H++++    + +   D        +SL    +  LP+ +E  C +  
Sbjct: 469 FAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTS 528

Query: 233 FLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECM- 290
            L +     L ++  P  F      LR+++ +  ++   PS S+  L +L +L L +C  
Sbjct: 529 VLLLQGNFLLKEV--PIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFK 586

Query: 291 LDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVR 350
           L  +  +  L  LE+L   G+ I++ P  L  L + R LDLS    L+ I   V+SRL  
Sbjct: 587 LVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSS 646

Query: 351 LEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVL--PEGFFARKL 408
           LE L M++    W  +G  +++  A ++E+  L RL  L + + +   L      + ++L
Sbjct: 647 LETLDMTSSHYRWSVQG-ETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRL 705

Query: 409 ERLS------WALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVL 462
           ++        + L    D   +    L ++ VSI       +     L L   Q ++ ++
Sbjct: 706 KKFQLVVGSRYILRTRHDKRRLTISHLNVSQVSIG----WLLAYTTSLALNHCQGIEAMM 761

Query: 463 FDL--DTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI-KLERICQ 519
             L  D +GF  LK L ++N      I+++   V +       +S ++ +L+  LE +  
Sbjct: 762 KKLVSDNKGFKNLKSLTIEN-----VIINTNSWVEMVSTNTSKQSSDILDLLPNLEELHL 816

Query: 520 DRLSVQSFNELKT-----------IRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQ 568
            R+ +++F+EL+T           I +  C +L  +        +P LE I +  C ++Q
Sbjct: 817 RRVDLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSLQ 876

Query: 569 EIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFC 605
            +      ++A+ + +     LR L L +LP L S C
Sbjct: 877 NL------HEALLYHQPFVPNLRVLKLRNLPNLVSIC 907

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  170 bits (430), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 173/627 (27%), Positives = 283/627 (45%), Gaps = 37/627 (5%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
           M + +N  +  L E+EAW LF     +   +   K  A +V+  C GLP+A+ TI R LR
Sbjct: 261 MMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLR 320

Query: 61  NK-SVPEWKSALQEL-RMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN- 117
            K  V  WK  L  L R    ++ E    + + T++LS+  L+ + +K  F+ C+L    
Sbjct: 321 GKPQVEVWKHTLNLLKRSAPSIDTE---EKIFGTLKLSYDFLQ-DNMKSCFLFCALFPED 376

Query: 118 -SICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIR 176
            SI  S L    +  G+L   +  ED  N+   LV  L+DSCLL +GDS   + MHDV+R
Sbjct: 377 YSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVR 436

Query: 177 DVAISIACREQ---HAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELP----EGLECP 229
           D AI     +    H++++    + E+P D  +     +SL    +  LP    EG+E  
Sbjct: 437 DFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETL 496

Query: 230 RLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVEC 289
               L +     + ++  P  F      LR++D + +++  LP S   L +L++L L  C
Sbjct: 497 ---VLLLQGNSHVKEV--PNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNC 551

Query: 290 -MLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRL 348
             L ++  +  L  L+ L    S I +LP  L  L+ LR + +SN ++L+ I    I +L
Sbjct: 552 KKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQL 611

Query: 349 VRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGF--FAR 406
             LE L M+     W  +G   E   A LDE+  LP L  L + + +       F    +
Sbjct: 612 SSLEVLDMAGSAYSWGIKGEEREG-QATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTK 670

Query: 407 KLERLSWALFAIDDHETMRTLK--LKLNSVSICSKK----LQGIKDVEYLCLEKLQDVKN 460
           +L +  +    I       T +  L ++ V++ +      LQ +  ++    E L  +  
Sbjct: 671 RLTKFQFLFSPIRSVSPPGTGEGCLAISDVNVSNASIGWLLQHVTSLDLNYCEGLNGMFE 730

Query: 461 VLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ- 519
            L       F  +K L +   P        + ++   D FP LE L+L N + LE I + 
Sbjct: 731 NLVTKSKSSFVAMKALSIHYFPSLSLASGCESQL---DLFPNLEELSLDN-VNLESIGEL 786

Query: 520 DRLSVQSFNELKTIRVEHCDQLSNIFLLSA-AKCLPRLERIAVINCRNIQEIFAVDGEYD 578
           +        +LK ++V  C QL  +F     A  LP L+ I V++C  ++E+F       
Sbjct: 787 NGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPV 846

Query: 579 AIDHQRIEFGQLRTLCLGSLPELTSFC 605
               + +   +L  + L  LP+L S C
Sbjct: 847 DFCAESL-LPKLTVIKLKYLPQLRSLC 872

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  164 bits (416), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 168/620 (27%), Positives = 283/620 (45%), Gaps = 91/620 (14%)

Query: 1   MGSQKNFSIDILNEEEAWRLF--KLVADDHVENREFKSTATEVAQACKGLPIALTTIARA 58
           MG++    ++ L ++ AW LF  K+   D +E+   +  A  +   C GLP+AL T+  A
Sbjct: 299 MGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGA 358

Query: 59  LRNKSVPE-WKSALQEL-RMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLG 116
           + ++   E W  A + L R P+E+         ++ ++ S+ NL+ + L+  F+ C+L  
Sbjct: 359 MAHRETEEEWIHASEVLTRFPAEMKGMNY---VFALLKFSYDNLESDLLRSCFLYCALFP 415

Query: 117 --NSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDV 174
             +SI    L +  +G G L   + + +   K Y L+ +L+ +CLL  GD   ++ MH+V
Sbjct: 416 EEHSIEIEQLVEYWVGEGFLTSSHGV-NTIYKGYFLIGDLKAACLLETGDEKTQVKMHNV 474

Query: 175 IRDVAISIACRE---QHAVLVR-NEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
           +R  A+ +A  +   +  +LV  +    E P     ++   ISL    I  LPE L CP+
Sbjct: 475 VRSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPK 534

Query: 231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECM 290
           L  L +    SL  I  P  FF  M  LRV+D +   +  +P SI  LV L  L      
Sbjct: 535 LTTLMLQQNSSLKKI--PTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHL------ 586

Query: 291 LDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVR 350
                           S  G+ I  LP+ELG+L KL+ LDL     L+ I  + I  L +
Sbjct: 587 ----------------SMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSK 630

Query: 351 LEELYMSNCFVEWDDEG-PNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLE 409
           LE L +   +  W+ +     E       +L +L  L TL + V +              
Sbjct: 631 LEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLS-------------- 676

Query: 410 RLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLD--T 467
                       ET++TL  +  ++          K +++L +E+  ++  + F+L   T
Sbjct: 677 -----------LETLKTL-FEFGALH---------KHIQHLHVEECNEL--LYFNLPSLT 713

Query: 468 EGFSQLKHLHVQNNPDFMCIVDSKERVPLD---DAFPILESLNLYNLIKLERICQDRLSV 524
                L+ L +++  D   +V      P D   D  P LE L L++L  L R+  + +S 
Sbjct: 714 NHGRNLRRLSIKSCHDLEYLV-----TPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQ 768

Query: 525 QSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQR 584
                ++ I + HC++L N+   S  + LP+LE I + +CR I+E+ + + E  +++   
Sbjct: 769 DCLRNIRCINISHCNKLKNV---SWVQKLPKLEVIELFDCREIEELIS-EHESPSVEDPT 824

Query: 585 IEFGQLRTLCLGSLPELTSF 604
           + F  L+TL    LPEL S 
Sbjct: 825 L-FPSLKTLRTRDLPELNSI 843

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  116 bits (290), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 148/561 (26%), Positives = 253/561 (45%), Gaps = 41/561 (7%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHV--ENREFKSTATEVAQACKGLPIALTTIARA 58
           M + K   +D L+ +EAW LF+L   D +   +++  + A  VA  C GLP+AL  I +A
Sbjct: 297 MKADKQIKVDCLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 356

Query: 59  LRNK-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN 117
           +  K +V EW+ A+  L  P    F G+       ++ S+ +LK  ++K  F+ CSL   
Sbjct: 357 MVCKETVQEWRHAINVLNSPGH-KFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPE 415

Query: 118 S--ICTSYLFQCCMGLGILQKVNKLED-ARNKLYALVHELRDSCLLLEGDSNQELSMHDV 174
              I    L +  +  G +   N+ ED   N+ Y ++  L  + LL+E +   ++ MHDV
Sbjct: 416 DFEIEKDKLIEYWICEGYINP-NRYEDGGTNQGYDIIGLLVRAHLLIECELTDKVKMHDV 474

Query: 175 IRDVAISIAC---REQHAVLVRN-EDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
           IR++A+ I      +Q  + V++   V   P+DI+ +    +SL    + ++     CP 
Sbjct: 475 IREMALWINSDFGNQQETICVKSGAHVRLIPNDISWEIVRQMSLISTQVEKIACSPNCPN 534

Query: 231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDF-TRMQLLLLPSSIDLLVNLQTLCLVEC 289
           L  L + P + L DI+    FF  M KL V+D  T   L+ LP  I  L +LQ L L   
Sbjct: 535 LSTLLL-PYNKLVDIS--VGFFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQYLNLSLT 591

Query: 290 MLDDIAI-IGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCF-KLKVIAPNVISR 347
            +  + + + KL+ L  L+   + +  L   +G  T L  L +   F  L  +   ++  
Sbjct: 592 GIKSLPVGLKKLRKLIYLNLEFTNV--LESLVGIATTLPNLQVLKLFYSLFCVDDIIMEE 649

Query: 348 LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARK 407
           L RL+ L +    +E   +    ER+   +D L    R   L  ++    V+        
Sbjct: 650 LQRLKHLKILTATIE---DAMILERVQG-VDRLASSIRGLCLR-NMSAPRVILNSVALGG 704

Query: 408 LERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDT 467
           L++L      I + E     K + +  S  S   + +  +  + L   +D+  +LF    
Sbjct: 705 LQQLGIVSCNISEIEIDWLSKERRDHRSTSSPGFKQLASITVIGLVGPRDLSWLLFA--- 761

Query: 468 EGFSQLKHLHVQNNPDFMCIVDSKERVPLDDA-------FPILESLNLYNLIKLERICQD 520
                LK + VQ +P    I++ ++ + +          F  LESL+LY L +L  IC +
Sbjct: 762 ---QNLKDIQVQYSPTIEEIINKQKGMSITKVHRDIVVPFGKLESLHLYQLAELTEICWN 818

Query: 521 RLSVQSFNELKTIRVEHCDQL 541
               Q+   L+   V +C +L
Sbjct: 819 ---YQTLPNLRESYVNYCPKL 836

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480 OS=Arabidopsis thaliana GN=At1g51480 PE=2 SV=2

 Score =  107 bits (267), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 142/570 (24%), Positives = 244/570 (42%), Gaps = 94/570 (16%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHV--ENREFKSTATEVAQACKGLPIALTTIARA 58
           M +     +  L+ +EAW LF++  DD +   + +  + A  VA  C GLP+AL  I  A
Sbjct: 298 MKADMQIKVSCLSPDEAWELFRITVDDVILSSHEDIPALARIVAAKCHGLPLALIVIGEA 357

Query: 59  LRNK-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN 117
           +  K ++ EW  A+  L  P+   F G+       ++ S+ +LK  ++K  F+ CSL   
Sbjct: 358 MACKETIQEWHHAINVLNSPAGHKFPGMEERILLVLKFSYDSLKNGEIKLCFLYCSLFPE 417

Query: 118 S--ICTSYLFQCCMGLGILQKVNKLED-ARNKLYALVHELRDSCLLLEGDSNQELSMHDV 174
              I    L +  +  G +   N+ ED   N+ Y ++  L  + LL+E +   ++ MH V
Sbjct: 418 DFEIEKEKLIEYWICEGYINP-NRYEDGGTNQGYDIIGLLVRAHLLIECELTTKVKMHYV 476

Query: 175 IRDVAISIAC---REQHAVLVRN-EDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
           IR++A+ I     ++Q  + V++   V   P+DI  +    +SL    I ++    +C  
Sbjct: 477 IREMALWINSDFGKQQETICVKSGAHVRMIPNDINWEIVRQVSLISTQIEKISCSSKCSN 536

Query: 231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDF-TRMQLLLLPSSIDLLVNLQTLCLVEC 289
           L  L + P + L +I+    FF  M KL V+D  T M L+ LP  I  L +LQ L L   
Sbjct: 537 LSTLLL-PYNKLVNIS--VGFFLFMPKLVVLDLSTNMSLIELPEEISNLCSLQYLNLS-- 591

Query: 290 MLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLV 349
                                +GI  LP  +  L KL  L+L   +KL+ +   + + L 
Sbjct: 592 --------------------STGIKSLPGGMKKLRKLIYLNLEFSYKLESLV-GISATLP 630

Query: 350 RLE--ELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARK 407
            L+  +L+ SN  V+           +  ++EL H+  L  L V + +  +L       +
Sbjct: 631 NLQVLKLFYSNVCVD-----------DILMEELQHMDHLKILTVTIDDAMILERIQGIDR 679

Query: 408 LE--------------RLSWALFAIDDHETMRTLKLKLN--------------------- 432
           L               R+  +  A+   + +  L   ++                     
Sbjct: 680 LASSIRGLCLTNMSAPRVVLSTTALGGLQQLAILSCNISEIKMDWKSKERREVSPMEIHP 739

Query: 433 SVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKE 492
           S S  S   + +  V  + L   +D+  +LF         LK LHV  +P+   I++ ++
Sbjct: 740 STSTSSPGFKQLSSVNIMKLVGPRDLSWLLFA------QNLKSLHVGFSPEIEEIINKEK 793

Query: 493 --RVPLDDAFPILESLNLYNLIKLERICQD 520
              +  + AF  LESL +Y L +L+ IC +
Sbjct: 794 GSSITKEIAFGKLESLVIYKLPELKEICWN 823

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 148/602 (24%), Positives = 257/602 (42%), Gaps = 96/602 (15%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHVEN-REFKSTATEVAQACKGLPIALTTIARAL 59
           M + ++  +  L+E +AW LF +    H +   E    A ++   C GLP+AL  I + +
Sbjct: 302 MRANEDIEVQCLSENDAWDLFDMKV--HCDGLNEISDIAKKIVAKCCGLPLALEVIRKTM 359

Query: 60  RNKS-VPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNS 118
            +KS V +W+ AL  L        +G     +  ++LS+  LK +   K F+ C+L   +
Sbjct: 360 ASKSTVIQWRRALDTLE-SYRSEMKGTEKGIFQVLKLSYDYLKTKN-AKCFLYCALFPKA 417

Query: 119 --ICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIR 176
             I    L +  +G G + + +  E A+++ Y ++  L  + LLLE  SN+++ MHD+IR
Sbjct: 418 YYIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLE--SNKKVYMHDMIR 475

Query: 177 DVAISIAC--REQHAVLVRNE-DVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLE- 232
           D+A+ I    R+    +V+ +  + + PD         +SL    I  +P+  E P    
Sbjct: 476 DMALWIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTN 535

Query: 233 ----FLHINPKDSLFDINNPCNFFTGMRKLRVVDFT-RMQLLLLPSSIDLLVNLQTLCLV 287
               FL  N    L DI     FF  M  L V+D +   Q+  LP  I  LV+L+     
Sbjct: 536 LVTLFLQNN---RLVDIVG--KFFLVMSTLVVLDLSWNFQITELPKGISALVSLR----- 585

Query: 288 ECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISR 347
                            +L+  G+ I  LPE LG L+KL  L+L +   L+ +   +IS 
Sbjct: 586 -----------------LLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSVG--LISE 626

Query: 348 LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARK 407
           L +L+ L         D            L  L  L  L  L V V ND+VL E   + +
Sbjct: 627 LQKLQVLRFYGSAAALD---------CCLLKILEQLKGLQLLTVTVNNDSVLEEFLGSTR 677

Query: 408 LERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDT 467
           L  ++  ++       +  LK+   ++   S             L KL+ V   + +  T
Sbjct: 678 LAGMTQGIY-------LEGLKVSFAAIGTLSS------------LHKLEMVNCDITESGT 718

Query: 468 EGFSQLKHLH---------VQNNPDF--MCIVDSKERVPLDDAFPILESLNLYNLI---- 512
           E   + +  +           +NP F  +  V     + L D   ++ + NL +L     
Sbjct: 719 EWEGKRRDQYSPSTSSSEITPSNPWFKDLSAVVINSCIHLKDLTWLMYAANLESLSVESS 778

Query: 513 --KLERICQDR---LSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNI 567
               E I +++   + V  F EL+ +R+ +  +L +I+    +    +L ++ + NC N+
Sbjct: 779 PKMTELINKEKAQGVGVDPFQELQVLRLHYLKELGSIYGSQVSFPKLKLNKVDIENCPNL 838

Query: 568 QE 569
            +
Sbjct: 839 HQ 840

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 152/344 (44%), Gaps = 42/344 (12%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHVENR-EFKSTATEVAQACKGLPIALTTIARAL 59
           MG  K   +  L  ++AW LF     + +E+  +    A  +A+ C GLP+AL  I   +
Sbjct: 300 MGVDKEIEVTCLMWDDAWDLFTRNMKETLESHPKIPEVAKSIARKCNGLPLALNVIGETM 359

Query: 60  -RNKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNS 118
            R KS+ EW  A+          F G+ A+  S ++ S+ +LK E+ K  F+  +L    
Sbjct: 360 ARKKSIEEWHDAVGV--------FSGIEADILSILKFSYDDLKCEKTKSCFLFSALFPED 411

Query: 119 --ICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIR 176
             I    L +  +G GI+     +     K Y ++  L  + LL E ++ +++ MHDV+R
Sbjct: 412 YEIGKDDLIEYWVGQGIILGSKGIN---YKGYTIIGTLTRAYLLKESETKEKVKMHDVVR 468

Query: 177 DVA--ISIACREQHA----VLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
           ++A  IS  C +Q      V+  N  + + P     K    +SL    I E  E L CP+
Sbjct: 469 EMALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRRMSLIYNQIEEACESLHCPK 528

Query: 231 L---------------EFLHINPKDSLFDINNPCNF-----FTGMRKLRVVDFTRMQLLL 270
           L               EFL   P   + D++   N      F+ +  LR ++ +   +  
Sbjct: 529 LETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNLIELPSFSPLYSLRFLNLSCTGITS 588

Query: 271 LPSSIDLLVNLQTLCLVEC-MLDDIAIIGKLKNLEILSFWGSGI 313
           LP  +  L NL  L L    ML  I  I  L NLE+L  + SGI
Sbjct: 589 LPDGLYALRNLLYLNLEHTYMLKRIYEIHDLPNLEVLKLYASGI 632

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 156/577 (27%), Positives = 246/577 (42%), Gaps = 58/577 (10%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHV--ENREFKSTATEVAQACKGLPIALTTIARA 58
           MG      +  L  EE+W LF++    +    + +    A +VA+ C+GLP+AL  I  A
Sbjct: 302 MGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEA 361

Query: 59  LR-NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN 117
           +   ++V EW  A+  L   S ++F G+  E    ++ S+ NL GE +K  F+ CSL   
Sbjct: 362 MACKRTVHEWCHAIDVL-TSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPE 420

Query: 118 S--ICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQE-LSMHDV 174
              I    L    +  G + +    E   N+ Y ++  L  +CLLLE + N+  + MHDV
Sbjct: 421 DYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDV 480

Query: 175 IRDVAISIAC---REQHAVLVR-NEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
           +R++A+ I+    +++   +VR    + E P          ISL    I E+ +  EC  
Sbjct: 481 VREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAA 540

Query: 231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLL-LLPSSIDLLVNLQTLCLVEC 289
           L  L +   D    +     FF  M  L V+D +  Q L  LP  I  L +L+   L   
Sbjct: 541 LTTLFLQKNDV---VKISAEFFRCMPHLVVLDLSENQSLNELPEEISELASLRYFNLSYT 597

Query: 290 MLDDIAI-IGKLK-----NLEILSFWGS--GIVKLP--EELGHLTKLRQLDLSNCFKLK- 338
            +  + + +  LK     NLE +S  GS  GI  L     LG       LD+S   +L+ 
Sbjct: 598 CIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSRLLLDMSLVKELQL 657

Query: 339 -----VIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHV 393
                VI  ++ S LV  E L  S   VE   E  + + +      ++ LP +  L    
Sbjct: 658 LEHLEVITLDISSSLV-AEPLLCSQRLVECIKE-VDFKYLKEESVRVLTLPTMGNL---- 711

Query: 394 KNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLE 453
           +   +   G    K+ER +    +        T     N   +   K  G+KD+ +L   
Sbjct: 712 RKLGIKRCGMREIKIERTT----SSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLF- 766

Query: 454 KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIK 513
                 N+ F L+  GFS       +   D +    ++E       F  LE+L+L+ L  
Sbjct: 767 ----APNLTF-LEV-GFS-------KEVEDIISEEKAEEHSATIVPFRKLETLHLFELRG 813

Query: 514 LERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAA 550
           L+RI    L    F  LK I VE C++L  + L S +
Sbjct: 814 LKRIYAKAL---HFPCLKVIHVEKCEKLRKLPLDSKS 847

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 151/296 (51%), Gaps = 17/296 (5%)

Query: 1   MGSQKNFSIDILNEEEAWRLF-KLVADDHVENR-EFKSTATEVAQACKGLPIALTTIARA 58
           MG   +  +  L  ++AW LF K V +  + +  E  + A  VA+ C+GLP+AL  I   
Sbjct: 300 MGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGET 359

Query: 59  LRNK-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLL-- 115
           +  K +V EW+SA+  L   S   F G+  E    ++ S+ NLK EQLK  F  C+L   
Sbjct: 360 MAYKRTVQEWRSAIDVL-TSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPE 418

Query: 116 GNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVI 175
            ++I  + L    +G G + + NK   A N+ Y ++  L  SCLL+E ++ + + MHDV+
Sbjct: 419 DHNIEKNDLVDYWIGEGFIDR-NK-GKAENQGYEIIGILVRSCLLME-ENQETVKMHDVV 475

Query: 176 RDVAISIAC----REQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRL 231
           R++A+ IA     ++++ ++         P+    K    +SL   +I  + +  E P+L
Sbjct: 476 REMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQL 535

Query: 232 EFLHINPKDSLFDINNPCNFFTGMRKLRVVDFT-RMQLLLLPSSIDLLVNLQTLCL 286
             L +  K+ L  I++  +FF  M  L V+D +    L  LP+ I   V+LQ L L
Sbjct: 536 ITLLLR-KNFLGHISS--SFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSL 588

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g43740 OS=Arabidopsis thaliana GN=At5g43740 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 155/325 (47%), Gaps = 16/325 (4%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHV--ENREFKSTATEVAQACKGLPIALTTIARA 58
           M + K   +  L+ +EAW LF+L   D +   +++  + A  VA  C GLP+AL  I +A
Sbjct: 296 MKADKQIKVACLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 355

Query: 59  LRNK-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLL-- 115
           +  K ++ EW  A+  L       F G+       ++ S+ +LK  ++K  F+ CSL   
Sbjct: 356 MSCKETIQEWSHAINVLNSAGH-EFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPE 414

Query: 116 GNSICTSYLFQCCMGLGILQKVNKLEDA-RNKLYALVHELRDSCLLLEGDSNQELSMHDV 174
            + I      +  +  G +   N+ ED   N  Y ++  L  + LL+E +    + MHDV
Sbjct: 415 DSEIPKEKWIEYWICEGFINP-NRYEDGGTNHGYDIIGLLVRAHLLIECELTDNVKMHDV 473

Query: 175 IRDVAISIAC---REQHAVLVRN-EDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
           IR++A+ I     ++Q  + V++   V   P+DI  +    +S     I ++    +CP 
Sbjct: 474 IREMALWINSDFGKQQETICVKSGAHVRMIPNDINWEIVRTMSFTCTQIKKISCRSKCPN 533

Query: 231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFT-RMQLLLLPSSIDLLVNLQTLCLVEC 289
           L  L I     L  I+N   FF  M KL V+D +  + L+ LP  I  L +LQ L +   
Sbjct: 534 LSTLLILDNRLLVKISN--RFFRFMPKLVVLDLSANLDLIKLPEEISNLGSLQYLNISLT 591

Query: 290 MLDDIAI-IGKLKNLEILSFWGSGI 313
            +  + + + KL+ L  L+   +G+
Sbjct: 592 GIKSLPVGLKKLRKLIYLNLEFTGV 616

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	806
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.950	0.582	0.410	1e-147
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.946	0.666	0.409	1e-146
255563252	1603	Disease resistance protein RPS5, putativ	0.946	0.475	0.412	1e-143
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.946	0.569	0.413	1e-142
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.946	0.570	0.410	1e-140
296087872	1152	unnamed protein product [Vitis vinifera]	0.981	0.686	0.375	1e-137
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.935	0.306	0.403	1e-137
358344903	2248	Cc-nbs-lrr resistance protein [Medicago	0.931	0.334	0.381	1e-131
357439285	1531	Cc-nbs resistance protein [Medicago trun	0.937	0.493	0.378	1e-130
358344271	1587	Cc-nbs-lrr resistance protein [Medicago	0.936	0.475	0.375	1e-129

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 326/795 (41%), Positives = 485/795 (61%), Gaps = 29/795 (3%)

Query: 1    MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
            MGS +NF I +L   EAW LF+ +    V+    +  A EVA+ C GLPI L T+ARAL+
Sbjct: 292  MGSNRNFPIQVLPASEAWNLFEKMVGVAVKKHSVRLVAAEVARRCAGLPILLATVARALK 351

Query: 61   NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCS-LLGNSI 119
            NK +  WK AL++L   +  + + +  + Y  +ELS+K+L+G+++K +F+LC  L  N+I
Sbjct: 352  NKDLYAWKKALKQL---TRFDKDDIDDQVYLGLELSYKSLRGDEIKSLFLLCGQLRSNNI 408

Query: 120  CTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVA 179
              S L +  +GL + +  + LE+ RN L  LV EL+ SCLLLEGD +  + MHDV+   A
Sbjct: 409  LISDLLRYGIGLDLFKGCSTLEETRNSLLTLVDELKASCLLLEGDKDGSVKMHDVVHSFA 468

Query: 180  ISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRL-EFLHINP 238
            IS+A R+ H + V +E   EWP +  L++  AISL    I +LP  LECP L  FL +N 
Sbjct: 469  ISVALRDHHVLTVADE-FKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLN- 526

Query: 239  KDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIG 298
            KD    I  P +FF  M++L+++D T + L  LPSS+  L NLQTLCL  C+L+DI+IIG
Sbjct: 527  KDPSLQI--PDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISIIG 584

Query: 299  KLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
            +L  L++LS   S IV+LP E+G +T+L+ LDLSNC +L+VI+PN +S L RLE+LYM N
Sbjct: 585  ELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGN 644

Query: 359  CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFA--RKLERL----- 411
             FV+W+ EG +S+R NA L EL HL  L+TL + + + + +P+  F+  + LER      
Sbjct: 645  SFVKWETEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFIG 704

Query: 412  -SWALFAIDDHETMRTLKLKLNSVSICSKKLQG-IKDVEYLCLEKLQDVKNVLFDLDTEG 469
              W  +++ D  T RTLKLKLN+V    + +   +K  E L L++L  VK++L DLD EG
Sbjct: 705  DGWD-WSVKD-ATSRTLKLKLNTVIQLEEGVNTLLKITEELHLQELNGVKSILNDLDGEG 762

Query: 470  FSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNE 529
            F QL+HLHVQN P    I++S    P   AF  L+SL L NL  LE+IC  +L  +S   
Sbjct: 763  FPQLRHLHVQNCPGVQYIINSIRMGP-RTAFLNLDSLFLENLDNLEKICHGQLMAESLGN 821

Query: 530  LKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQR-IEFG 588
            L+ ++VE C +L N+F +S A+ L RLE I +I+C+ ++E+ A + E DA D +  IEF 
Sbjct: 822  LRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDAADGEPIIEFT 881

Query: 589  QLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLE----DKLDISSALFNEKVA 644
            QLR L L  LP+ TSF   V+++  +Q   +  ++E  S E    ++L  S +LFN K+ 
Sbjct: 882  QLRRLTLQCLPQFTSFHSNVEESSDSQRRQKLLASEARSKEIVAGNELGTSMSLFNTKIL 941

Query: 645  LSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQ 704
              NLE L+++ + +EKIW +Q P     C +NL  + +  C  L Y+ ++SM+ S   L+
Sbjct: 942  FPNLEDLKLSSIKVEKIWHDQ-PSVQSPCVKNLASIAVENCRNLNYLLTSSMVESLAQLK 1000

Query: 705  HLEIRHCKGLQEIISKEG-ADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALK 763
             LEI +CK ++EI+  E   +  +    +F ++  L L+ LP+L   +   +  E  +LK
Sbjct: 1001 KLEICNCKSMEEIVVPEDIGEGKMMSKMLFPKLLILSLIRLPKL-TRFCTSNLLECHSLK 1059

Query: 764  LLDVSACDQVTVFDS 778
            +L V  C ++  F S
Sbjct: 1060 VLTVGNCPELKEFIS 1074

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 327/798 (40%), Positives = 478/798 (59%), Gaps = 35/798 (4%)

Query: 1    MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
            M  QKNF I+ L+EEE W LFK +A DHVE+ + +S A EVA+ C GLP+A+ T+ARAL+
Sbjct: 300  MDIQKNFPINALSEEETWELFKKMAGDHVEHPDLQSLAIEVAKMCAGLPVAIVTVARALK 359

Query: 61   NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSIC 120
            NK++ +WK+AL+EL+ PS  NF GV  + Y+ IELS+ +L+ ++LK  F+LCS +G +  
Sbjct: 360  NKNLSQWKNALRELKRPSPRNFAGVQEDVYAAIELSYNHLESKELKSTFLLCSRMGYNAS 419

Query: 121  TSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAI 180
            T  L +  MGLG+      +E+A++++++LVH+L+ S LLLE  S+ + SMHD +RDVAI
Sbjct: 420  TRDLLKYGMGLGLFSGFVTVEEAQDRVHSLVHKLKASGLLLENHSDWQFSMHDAVRDVAI 479

Query: 181  SIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKD 240
            SIA R+ H  +  +E   +W     LK+   I L   S  EL   +E P+L+FLH+  +D
Sbjct: 480  SIAFRDCHVFVGGDEVEPKWSAKNMLKKYKEIWL--SSNIELLREMEYPQLKFLHVRSED 537

Query: 241  SLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKL 300
               +I++  N   GM KL+V+  T + L+ LPS +  L NL+TLCL +  L +IA IG+L
Sbjct: 538  PSLEISS--NICRGMHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIADIGEL 595

Query: 301  KNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 360
            K LEILSF  S I  LP ++G LTKLR LDLS+CF+L VI PN+ S L  LEEL M N F
Sbjct: 596  KKLEILSFAKSNIKHLPRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELCMGNSF 655

Query: 361  VEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDD 420
              W  EG +    NA L EL HLP L  +++HV + +V+ +G  +++LER    +  + D
Sbjct: 656  HHWATEGED----NASLVELDHLPHLTNVDIHVLDSHVMSKGMLSKRLERFRIFIGDVWD 711

Query: 421  ----HETMRTLKLKLNSVS--ICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLK 474
                ++++RTLKLKLN+ +  +    L  +K  + L L +L+ V NV+ +LDTEGF QL+
Sbjct: 712  WDGVYQSLRTLKLKLNTSASNLEHGVLMLLKRTQDLYLLELKGVNNVVSELDTEGFLQLR 771

Query: 475  HLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIR 534
            HLH+ N+ D   I+++    P    FP+LESL LYNL+ LE++C   L+ +SF +L  I 
Sbjct: 772  HLHLHNSSDIQYIINTSSEFP-SHVFPVLESLFLYNLVSLEKLCHGILTAESFRKLTIIE 830

Query: 535  VEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDG---EYDAIDHQRIEFGQLR 591
            V +C +L ++F  S A+ L +L+ I +  C  ++E+ A +G   E    +   +EF QL 
Sbjct: 831  VGNCVKLKHLFPFSVARGLSQLQTINISFCLTMEEVVAEEGDEFEDSCTEIDVMEFNQLS 890

Query: 592  TLCLGSLPELTSFCCGVKKNR--QAQ--------GMHETCSNEISSLEDKLDISSALFNE 641
            +L L  LP L +FC   K +R  QAQ        G+    S EIS  ED+      LF E
Sbjct: 891  SLSLQCLPHLKNFCSREKTSRLCQAQLNPVATSVGLQ---SKEIS--EDEPRNPLQLFCE 945

Query: 642  KVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFE 701
            K+ +  L+ LE+  +N+EKIW  QL        QNL  L +  C  LKY+FS SM+ S  
Sbjct: 946  KILIPKLKKLELVSINVEKIWHGQLHRENTFPVQNLQTLYVDDCHSLKYLFSPSMVKSLV 1005

Query: 702  HLQHLEIRHCKGLQEIISKEGADD-HVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWP 760
             L++L +R+CK ++EIIS EG ++  +     F ++  + L  LP L     G    +  
Sbjct: 1006 QLKYLTVRNCKSMEEIISVEGVEEGEMMSEMCFDKLEDVELSDLPRLTWFCAG-SLIKCK 1064

Query: 761  ALKLLDVSACDQVTVFDS 778
             LK L +  C +   F S
Sbjct: 1065 VLKQLYICYCPEFKTFIS 1082

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 328/795 (41%), Positives = 476/795 (59%), Gaps = 32/795 (4%)

Query: 1    MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
            MG QK F +++L EEEA  LF+++  D V+  EF+S A+EV + C GLP+ + TIARAL+
Sbjct: 299  MGVQKVFRLEVLQEEEALSLFEMMVGD-VKGGEFQSAASEVTKKCAGLPVLIVTIARALK 357

Query: 61   NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNS-I 119
            NK +  WK A+++L   S  + E +  + YS +ELS+ +L G ++K +F+LC LLG S I
Sbjct: 358  NKDLYVWKDAVKQL---SRCDNEEIQEKVYSALELSYNHLIGAEVKSLFLLCGLLGKSDI 414

Query: 120  CTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVA 179
                L     GLG+ + ++ L DARN+++ L+ +L+ +CLLL+ D    + +HDV+RDVA
Sbjct: 415  AILDLLMYSTGLGLFKGIDTLGDARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDVA 474

Query: 180  ISIACREQHAVLVRNEDVW-EWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINP 238
            ISIA R QH   VRN  +  EWP+    K C  ISL    IH LPE LECP LE   +  
Sbjct: 475  ISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLFT 534

Query: 239  KDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIG 298
            +D    + + C  F   + LRV++FT M    LP S+  L NL TLCL  C L D+AIIG
Sbjct: 535  QDISLKVPDLC--FELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVAIIG 592

Query: 299  KLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
            +L  L ILSF  S IV+LP E+  LTKL+ LDLS+C KLKVI   +IS L +LEELYM+N
Sbjct: 593  ELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMNN 652

Query: 359  CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLS------ 412
             F  WD +G N++R NA L EL  LP L TLE+ V +  +LP+  F RKLER        
Sbjct: 653  SFDLWDVQGINNQR-NASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERFRIFIGDV 711

Query: 413  WALFAIDDHETMRTLKLKLNSVSICSKKLQGI--KDVEYLCLEKLQDVKNVLFDLDTEGF 470
            W+     D+ T RTLKLKLN+ SI  +    I  +  E L L +++ +K+VL+DLD++GF
Sbjct: 712  WS--GTGDYGTSRTLKLKLNTSSIHLEHGLSILLEVTEDLYLAEVKGIKSVLYDLDSQGF 769

Query: 471  SQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNEL 530
            +QLKHL VQN+P+   I+D   R P  +AFPILESL L NL+ LE+IC  +L+  SF++L
Sbjct: 770  TQLKHLDVQNDPEIQYIIDPNRRSPC-NAFPILESLYLDNLMSLEKICCGKLTTGSFSKL 828

Query: 531  KTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQL 590
            +++ V  CD+L N+F  S  +CL +L+++ V++C N++EI A   E    D++ ++  QL
Sbjct: 829  RSLTVVKCDRLKNLFSFSMMRCLLQLQQMKVVDCANLEEIVACGSEDTDNDYEAVKLTQL 888

Query: 591  RTLCLGSLPELTSFCCGVKKNR-----QAQGMHETCSNEISSLEDKLDISSALFNEKVAL 645
             +L L  LP   SFC   K +      Q Q   +T   EI+  + +L     LFNE    
Sbjct: 889  CSLTLKRLPMFKSFCSKKKVSPISLRVQKQLTTDTGLKEIAP-KGELGDPLPLFNEMFCF 947

Query: 646  SNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQH 705
             NLE LE++ +  EKI  +QL         NL  LI+ +C  LKY+F++S++ +   L+ 
Sbjct: 948  PNLENLELSSIACEKICDDQLSAIS----SNLMSLIVERCWNLKYLFTSSLVKNLLLLKR 1003

Query: 706  LEIRHCKGLQEII-SKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKL 764
            LE+  C  ++ II ++E  ++      +F ++  L L  LP +     G +  E+ +L+ 
Sbjct: 1004 LEVFDCMSVEGIIVAEELVEEERNRKKLFPELDFLKLKNLPHITRFCDG-YPVEFSSLRK 1062

Query: 765  LDVSACDQVTVFDSE 779
            L +  C  + +F S+
Sbjct: 1063 LLIENCPALNMFVSK 1077

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 326/789 (41%), Positives = 478/789 (60%), Gaps = 26/789 (3%)

Query: 1    MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
            MG+ +NF + +L   EAW  F+ +    V+N   +  A EVA+ C GLPI L T+ARAL+
Sbjct: 292  MGANRNFQVQVLPVREAWNFFEKMVGVTVKNPSVQPVAAEVAKRCAGLPILLATVARALK 351

Query: 61   NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCS-LLGNSI 119
            N+ +  WK AL++L   +  + + +  + YS +ELS+K L+G+++K +F+LC   L    
Sbjct: 352  NEDLYAWKDALKQL---TRFDKDEIDNQVYSCLELSYKALRGDEIKSLFLLCGQFLTYDS 408

Query: 120  CTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVA 179
              S L +  +GL + +  + LE+ARN+L  LV EL+ SCLLLEGD +  + MHDV++  A
Sbjct: 409  SISDLLKYAIGLDLFKGRSTLEEARNRLRTLVDELKASCLLLEGDKDGRVKMHDVVQSFA 468

Query: 180  ISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPK 239
             S+A R+ H ++V +E   EWP    L++  AISL    I +LP  LECP L    +  K
Sbjct: 469  FSVASRDHHVLIVADE-FKEWPTSDVLQQYTAISLPYRKIPDLPAILECPNLNSFILLNK 527

Query: 240  DSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGK 299
            D    I  P NFF  M++L+V+D TR+ L  LPSS+  L NLQTLCL  C+L+DI+I+G+
Sbjct: 528  DPSLQI--PDNFFREMKELKVLDLTRVNLSPLPSSLQFLENLQTLCLDGCVLEDISIVGE 585

Query: 300  LKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
            LK L++LS   S IV LP E+G LT+L  LDLSNC +L+VI+PNV+S L RLEELYM N 
Sbjct: 586  LKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNS 645

Query: 360  FVEWDDEGPNSERINARLDELMHLPRLATLEVHVKN-DNVLPE-GFFARKLERLSWALFA 417
            FV+W+ EG +S+R NA L EL  L  L TL + + + DN+L +  F  +KLER  + +F 
Sbjct: 646  FVKWETEGSSSQRNNACLSELKRLSNLITLHMQITDADNMLKDLSFLFQKLER--FRIFI 703

Query: 418  IDD------HETMRTLKLKLNSVSICSKKLQG-IKDVEYLCLEKLQDVKNVLFDLDTEGF 470
             D       + T RTLKLKLN+V    + +   +K  E L L++L+ VK++L DLD E F
Sbjct: 704  GDGWDWSVKYATSRTLKLKLNTVIQLEEWVNTLLKSTEELHLQELKGVKSILNDLDGEDF 763

Query: 471  SQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNEL 530
             +LKHLHVQN P    I++S    P   AF  L+SL L NL  LE+IC  +L  +S  +L
Sbjct: 764  PRLKHLHVQNCPGVQYIINSIRMGP-RTAFLNLDSLFLENLDNLEKICHGQLMAESLGKL 822

Query: 531  KTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQL 590
            + ++VE C +L N+F +S A+ L RLE I +I+C+ ++E+ A + E D  D + IEF QL
Sbjct: 823  RILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDTADGEPIEFAQL 882

Query: 591  RTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEV 650
            R L L  LP+ TSF       RQ     +  S EI +  ++L  S +LFN K+   NLE 
Sbjct: 883  RRLTLQCLPQFTSFHSN---RRQKLLASDVRSKEIVA-GNELGTSMSLFNTKILFPNLED 938

Query: 651  LEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRH 710
            L+++ + +EKIW +Q P     C +NL  +++  C  L Y+ ++SM+ S   L+ LEI +
Sbjct: 939  LKLSSIKVEKIWHDQ-PAVQPPCVKNLASMVVESCSNLNYLLTSSMVESLAQLERLEICN 997

Query: 711  CKGLQEIISKEG-ADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSA 769
            C+ ++EI+  EG  +  +    +F ++  L L GLP+L   +   +  E  +LK+L V  
Sbjct: 998  CESMEEIVVPEGIGEGKMMSKMLFPKLHLLELSGLPKL-TRFCTSNLLECHSLKVLMVGN 1056

Query: 770  CDQVTVFDS 778
            C ++  F S
Sbjct: 1057 CPELKEFIS 1065

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 324/789 (41%), Positives = 477/789 (60%), Gaps = 26/789 (3%)

Query: 1    MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
            MG+ +NF I IL   EAW  F+ +    V+N   +  A EVA+ C GLPI L T+ARAL+
Sbjct: 292  MGANRNFQIQILPVREAWNFFEKMVGVTVKNPSVQLVAAEVAKRCAGLPILLATVARALK 351

Query: 61   NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCS-LLGNSI 119
            N+ +  WK AL +L   +  + + +   AYS +ELS+K L+ +++K +F+LC  +L    
Sbjct: 352  NEDLYAWKEALTQL---TRFDKDDIDKTAYSCLELSYKALRDDEIKSLFLLCGQILTYDA 408

Query: 120  CTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVA 179
              S L +  +GL + +  +  E+ARN+L+ LV EL+ SCLLLEGD++  + MHDV+R  A
Sbjct: 409  LISDLLKYAIGLDLFKGRSTSEEARNRLHTLVDELKASCLLLEGDNDGSVKMHDVVRSFA 468

Query: 180  ISIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPK 239
            IS+A R+ H ++V +E   EWP +  L++  AISL    I +LP  LECP L    +   
Sbjct: 469  ISVALRDHHVLIVADE-FKEWPTNDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLST 527

Query: 240  DSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGK 299
            D    I  P NFF  M++L+V+D T + L  LPSS+  L NLQTLCL  C+L+DI+I+G+
Sbjct: 528  DPSLQI--PENFFREMKELKVLDLTGVNLSPLPSSLQFLENLQTLCLDFCVLEDISIVGE 585

Query: 300  LKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
            LK L++LS  GS IV LP E+G LT+L  LDLSNC +L+VI+PNV+S L RLEELYM N 
Sbjct: 586  LKKLKVLSLMGSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNS 645

Query: 360  FVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFA--RKLERLSWALFA 417
            F++W+ EGP+SER +A L EL  L  L TL++ + + + +P+  F   +KLER  + +F 
Sbjct: 646  FLKWEAEGPSSERNSACLSELKLLANLITLDMQITDADHMPKDLFLCFQKLER--FRIFI 703

Query: 418  IDD------HETMRTLKLKLNSVSICSKKLQG-IKDVEYLCLEKLQDVKNVLFDLDTEGF 470
             D       + T RTLKLKLN+V    +++   +K  E L L++L  VK++L DLD EGF
Sbjct: 704  GDGWDWSVKYATSRTLKLKLNTVIQLEERVNTLLKITEELHLQELNGVKSILNDLDEEGF 763

Query: 471  SQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNEL 530
             QLK LHVQN P    I++S    P   AF  L+SL L NL  LE+IC  +L  +S   L
Sbjct: 764  CQLKDLHVQNCPGVQYIINSMRMGP-RTAFLNLDSLFLENLDNLEKICHGQLMAESLGNL 822

Query: 531  KTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQL 590
            + ++VE C +L N+F +S A+ + RLE I +I+C+ ++E+ A + E D  D + IEF QL
Sbjct: 823  RILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIMEEVVAEESENDTADGEPIEFTQL 882

Query: 591  RTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEV 650
            R L L  LP+ TSF       RQ     +  S EI +  ++L  S +LFN K+    LE 
Sbjct: 883  RRLTLQCLPQFTSFH---SNRRQKLLASDVRSKEIVA-GNELGTSMSLFNTKILFPKLED 938

Query: 651  LEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRH 710
            L ++ + +EKIW +Q  V    C +NL  +++  C  L Y+ ++SM+ S   L+ LEI +
Sbjct: 939  LMLSSIKVEKIWHDQHAVQP-PCVKNLASIVVESCSNLNYLLTSSMVESLAQLKSLEICN 997

Query: 711  CKGLQEIISKEG-ADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSA 769
            CK ++EI+  EG  +  +    +F ++  L L+ LP+L   +   +  E  +LK+L +  
Sbjct: 998  CKSMEEIVVPEGIGEGKMMSKMLFPKLHILSLIRLPKL-TRFCTSNLLECHSLKVLTLGK 1056

Query: 770  CDQVTVFDS 778
            C ++  F S
Sbjct: 1057 CPELKEFIS 1065

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 325/865 (37%), Positives = 478/865 (55%), Gaps = 74/865 (8%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
           MG+QK+F ++ L EEEA  LFK +A D +E  + +S A +VA+ C GLPIA+ T+A+AL+
Sbjct: 117 MGTQKDFPVEHLQEEEALILFKKMAGDSIEEPDLQSIAIDVAKECAGLPIAIVTVAKALK 176

Query: 61  NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSIC 120
           NK +  W+ AL++L+     N +G+ A  YST+ELS+K+L+G+++K +F+LC L+ N I 
Sbjct: 177 NKGLSIWEDALRQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLMSNKIY 236

Query: 121 TSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAI 180
              L +  MGL + Q  N LE+A+N++  LV  L+ S LLL+   N  + MHDV+RDVAI
Sbjct: 237 IDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAI 296

Query: 181 SIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLE-FLHINPK 239
           +I  +      +R +++ EWP    L+ C  +SL    I ELP  L CP LE FL  +  
Sbjct: 297 AIVSKVHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLFYHTI 356

Query: 240 DSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGK 299
           D  + +  P  FF  M+KL+V+D + M    LPSS+  L NL+TL L  C L DI+II +
Sbjct: 357 D--YHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVE 414

Query: 300 LKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
           LK LE  SF GS I KLP E+  LT LR  DL +C KL+ I PNVIS L +LE L M N 
Sbjct: 415 LKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENS 474

Query: 360 FVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAID 419
           F  W+ EG    + NA + E  +LP L TL++ + +  +L       KL R  + +F  D
Sbjct: 475 FTLWEVEG----KSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIR--YRIFIGD 528

Query: 420 ----DHETMRTLKLKLNSVSICSKKLQGI----KDVEYLCLEKLQDVKNVLFDLDTEGFS 471
               D     T  LKLN +    +   GI    K  + L L +L    NV   LD EGF 
Sbjct: 529 VWSWDKNCPTTKTLKLNKLDTSLRLADGISLLLKGAKDLHLRELSGAANVFPKLDREGFL 588

Query: 472 QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELK 531
           QLK LHV+ +P+   I++S + +    AFP+LESL L  LI L+ +C  +L V SF+ L+
Sbjct: 589 QLKCLHVERSPEMQHIMNSMDPILSPCAFPVLESLFLNQLINLQEVCHGQLLVGSFSYLR 648

Query: 532 TIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAV---DGEYDAIDHQRIEFG 588
            ++VE+CD L  +F +S A+ L RLE+I +  C+N+ ++ A    DG+ DA+D   I F 
Sbjct: 649 IVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKNMYKMVAQGKEDGD-DAVD--AILFA 705

Query: 589 QLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSL--EDKLDISSALFNEKVALS 646
           +LR L L  LP+L +FC   K          T +   + +  E +LD  +++FN+ V  S
Sbjct: 706 ELRYLTLQHLPKLRNFCLEGKTMPSTTKRSPTTNVRFNGICSEGELDNQTSVFNQLVCHS 765

Query: 647 NL-------------------------EVLEMNKVN--------------------IEKI 661
           ++                         EV +M  +N                    +++I
Sbjct: 766 SIILSNYMLKRLQSLQFLKAVDCSSLEEVFDMEGINVKEAVAVTQLSKLILQFLPKVKQI 825

Query: 662 WPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKE 721
           W N+ P  + L FQNL  +++ +C  LK +F AS++     LQ L++  C G++ I++K+
Sbjct: 826 W-NKEPRGI-LTFQNLKSVMIDQCQSLKNLFPASLVRDLVQLQELQVWSC-GIEVIVAKD 882

Query: 722 GADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELF 781
                    FVF +VT+L L  L +L+  YPG HTS+WP LK L V  C +V +F  E  
Sbjct: 883 NG-VKTAAKFVFPKVTSLRLSHLHQLRSFYPGAHTSQWPLLKELKVHECPEVDLFAFETP 941

Query: 782 SFFKSSEEDKPDIPARQPLFLLEKV 806
           +F +       D+   QPLFL+++V
Sbjct: 942 TFQQIHHMGNLDMLIHQPLFLVQQV 966

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 319/790 (40%), Positives = 473/790 (59%), Gaps = 36/790 (4%)

Query: 1    MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
            M  Q++F + +L +EEAW+LF+  A + V++      AT++A+ C GLP+ +  +A AL+
Sbjct: 250  MDVQRHFLLRVLQDEEAWQLFEKKAGE-VKDPTLHPIATQIARKCAGLPVLIVAVATALK 308

Query: 61   NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLL-GNSI 119
            NK + EW+ AL++L   ++ + EG  A +Y+ ++LS+ N  G + K +F+LC  L  + I
Sbjct: 309  NKELCEWRDALEDL---NKFDKEGYEA-SYTALKLSY-NFLGAEEKSLFVLCGQLKAHYI 363

Query: 120  CTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVA 179
              S L +  +GLG+  +   ++ ARN+L  +V++L+ SCLLLEGD + E+ MHDV+ + A
Sbjct: 364  VVSDLLKYSLGLGLFNQRTTVKAARNRLLKVVNDLKRSCLLLEGDDDDEVRMHDVVHNFA 423

Query: 180  ISIACREQHAVLVR-NEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINP 238
              +A R+ H   V  +  + EWP+   L++  AISL  C I +LPE  ECP L+   +  
Sbjct: 424  TLVASRDHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECPDLQSFLLYN 483

Query: 239  KDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIG 298
            KDS   I  P NFF+ M+KL+++D + + L  +P S+  L NLQTLCL  C L+DIA IG
Sbjct: 484  KDSSLKI--PDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCTLEDIAAIG 541

Query: 299  KLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
            +LK L++LSF GS +V+LP E+G LT+L+ LDLS C KL+VI   V+S L +LEELYM N
Sbjct: 542  ELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKLEELYMGN 601

Query: 359  CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLS------ 412
             FV+W+ E  + +R NA LDEL  LP L TLE+H+ N  +LP   F+ KL+         
Sbjct: 602  SFVQWESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDLYKVFIGEE 661

Query: 413  WALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQ 472
            W+ F    +E  RTLKLKLNS     K    +   E L L++L+ V+NVL++LD +GF Q
Sbjct: 662  WSWFG--KYEASRTLKLKLNSSIEIEKVKVLLMTTEDLYLDELEGVRNVLYELDGQGFPQ 719

Query: 473  LKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKT 532
            LKHLH+QN+ +   IVD         AFP LESL + NL  L +IC  +L   SF++L+ 
Sbjct: 720  LKHLHIQNSSEIQYIVDCLSMGNHYIAFPRLESLLVDNLNNLGQICYGQLMSGSFSKLRK 779

Query: 533  IRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRT 592
            ++VEHC+ L N+F  S  + L +LE I V +C  ++EI   + E D+   + I+  +LRT
Sbjct: 780  LKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCNIMEEIVVEEIEDDSGRDEIIKPIRLRT 839

Query: 593  LCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLE 652
            L L  LP  TSFC   ++ ++  G+   C+  IS      +  S LF +K+  SNL  L+
Sbjct: 840  LTLEYLPRFTSFCS--QRMQKLAGLDAGCAQIIS------ETPSVLFGQKIEFSNLLNLK 891

Query: 653  MNKV-NIEKIWPNQL---PVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEI 708
            ++ + N+EKIW NQ+   P ++    QNLT LI+  C KL Y+F++SM+ +   L++LEI
Sbjct: 892  LSSINNMEKIWRNQVKEPPSSV----QNLTSLIVEGCGKLSYLFTSSMVENLSQLEYLEI 947

Query: 709  RHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVS 768
              C  ++EII  EG   H      F  + TL L  LP L     G +  E P+L  L + 
Sbjct: 948  SDCSFMEEIIVAEGLTKH-NSKLHFPILHTLKLKSLPNLIRFCFG-NLIECPSLNALRIE 1005

Query: 769  ACDQVTVFDS 778
             C ++  F S
Sbjct: 1006 NCPRLLKFIS 1015

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344903|ref|XP_003636525.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502460|gb|AES83663.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 306/802 (38%), Positives = 460/802 (57%), Gaps = 51/802 (6%)

Query: 7    FSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNK-SVP 65
            F ++++NE E W LF+ +A D VE+R  K  A +VA+ C+GLP+ + T+ARA++NK  V 
Sbjct: 303  FKLELMNENETWSLFQFMAGDVVEDRNLKDVAVQVAKKCEGLPLMVVTVARAMKNKRDVQ 362

Query: 66   EWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLK-KIFMLCSLLGNSICTSYL 124
             WK AL++L+       + +    YS +ELS+ +L+ +++K    +   LLGN I   Y 
Sbjct: 363  SWKDALRKLQSTDHTEMDAI---TYSALELSYNSLESDEMKDLFLLFALLLGNDI--EYF 417

Query: 125  FQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIAC 184
             +  MGL IL+ +N ++DARN+LY ++  L+ +CLLLE  +   + MHD +RD AISIA 
Sbjct: 418  LKVAMGLDILKHINAIDDARNRLYTIIKSLKATCLLLEVKTGGRIQMHDFVRDFAISIAR 477

Query: 185  REQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFD 244
            R++H  L +  D  EW      K C  I L GC IHELP+ ++CP ++  ++   +   +
Sbjct: 478  RDKHVFLRKQFDE-EWTTKDFFKRCTQIILDGCCIHELPQMIDCPNIKLFYLGSMNQSLE 536

Query: 245  INNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLE 304
            I  P  FF GMR LRV+D T + L  LP+S  LL +LQTLCL  C+L+++  I  L+NLE
Sbjct: 537  I--PDTFFEGMRSLRVLDLTHLNLSSLPTSFRLLTDLQTLCLDFCILENMDAIEALQNLE 594

Query: 305  ILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWD 364
            IL    S ++KLP E+G LT+LR LDLS+   ++V+ PN+IS L +LEELYM N  + W+
Sbjct: 595  ILRLCKSSMIKLPREIGKLTQLRMLDLSHS-GIEVVPPNIISSLSKLEELYMGNTSINWE 653

Query: 365  DEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGF--FARKLERLS------WALF 416
            D     +  NA + EL  LP L  LE+ V+   +LP        KLER        W   
Sbjct: 654  DVNSKVQNENASIAELRKLPHLTALELQVRETWMLPRDLQLVFEKLERYKIAIGDVWEWS 713

Query: 417  AIDDHETMRTLKLKLNSVSICSKKLQG-IKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKH 475
             I+D  T++TL LKL +       ++  IK VE L L+ +  ++NVL +L+ EGF+ LKH
Sbjct: 714  DIEDG-TLKTLMLKLGTNIHLEHGIKALIKCVENLYLDDVDGIQNVLPNLNREGFTLLKH 772

Query: 476  LHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRV 535
            LHVQNN +   IVD+KER  +  +FPILE+L L NL  LE IC  + SV SF  L  I+V
Sbjct: 773  LHVQNNTNLNHIVDNKERNQIHASFPILETLVLLNLRNLEHICHGQPSVASFGSLSVIKV 832

Query: 536  EHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDA---IDHQRIEFGQLRT 592
            ++C QL  +F  +  K L  L +I V  C +++EI   D    A   I  ++IEF QLR+
Sbjct: 833  KNCVQLKYLFSFTMVKGLSHLCKIEVCECNSMKEIVFRDNNSSANNDITDEKIEFLQLRS 892

Query: 593  LCLGSLPELTS-FCCGVKKNRQAQGMH--ETCSNEISSLEDKLDISSALFNEKVALSNLE 649
            L L  L  L + F   +  +R  Q  H  E C             S+  FN +V   NL+
Sbjct: 893  LTLEHLETLDNFFSYYLTHSRNKQKCHGLEPCD------------SAPFFNAQVVFPNLD 940

Query: 650  VLEMNK-VNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEI 708
             L+ +  +N+ K+W +       +C  NLT LI+  C  LKY+F ++++ SF +L+HLEI
Sbjct: 941  TLKFSSLLNLNKVWDDN---HQSMC--NLTSLIVDNCVGLKYLFPSTLVESFMNLKHLEI 995

Query: 709  RHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVS 768
             +C  ++EII+K+  ++ +     FL +  +IL  +  LK ++      ++   K+L+V+
Sbjct: 996  SNCHMMEEIIAKKDRNNAL-KEVRFLNLEKIILKDMDSLKTIW----HYQFETSKMLEVN 1050

Query: 769  ACDQ-VTVFDSELFSFFKSSEE 789
             C + V VF S + + +   E+
Sbjct: 1051 NCKKIVVVFPSSMQNTYNELEK 1072

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439285|ref|XP_003589919.1| Cc-nbs resistance protein [Medicago truncatula] gi|355478967|gb|AES60170.1| Cc-nbs resistance protein [Medicago truncatula]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 303/800 (37%), Positives = 463/800 (57%), Gaps = 44/800 (5%)

Query: 6    NFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNK-SV 64
            +F +++++E E+W LF+ +A D V++   K    +VA+ C GLP+ + T+ARA++NK  V
Sbjct: 303  SFKVELMSENESWSLFQFMAGDVVKDSNLKDLPFKVARKCAGLPLRVVTVARAMKNKRDV 362

Query: 65   PEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSL-LGNSICTSY 123
              WK AL++L+  S  + E  P   YS +ELS+ +L+ + ++ +F+L +L LG+ I   Y
Sbjct: 363  QSWKDALRKLQ--SNDHTEMDPG-TYSALELSYNSLESDDMRDLFLLFALMLGDDI--EY 417

Query: 124  LFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIA 183
              +   GL IL+ VN ++DARN+LY ++  L  +CLLLE  ++  + MHD +RD AISIA
Sbjct: 418  FLKVAKGLDILKHVNAIDDARNRLYTIIKSLEAACLLLEVKTDGNIQMHDFVRDFAISIA 477

Query: 184  CREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLF 243
             R++H  L +  D  EWP +  LK C  I L+ C   ELP+ ++CP ++  ++    S F
Sbjct: 478  RRDKHIFLRKQSDE-EWPTNDFLKRCTQIFLKRCHTLELPQTIDCPNVKLFYLGCNISSF 536

Query: 244  DINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNL 303
             I  P  FF GMR LRV+D TR+ LL LP+S   L  LQTLCL  C+L+++  I  L+NL
Sbjct: 537  KI--PDAFFEGMRSLRVLDLTRLNLLSLPTSFRFLTELQTLCLDYCILENMDAIEALQNL 594

Query: 304  EILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEW 363
            EIL  W S ++KLP E+G L +LR LDLS+   ++V+ PN+IS L +LEELYM N  + W
Sbjct: 595  EILRLWKSSMIKLPREIGRLIRLRMLDLSHS-GIEVVPPNIISSLTKLEELYMGNTSINW 653

Query: 364  DDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGF--FARKLERLSWALFAIDDH 421
            +D        NA L EL  LP+L  LE+ ++   +LP        KLER   A+  + D 
Sbjct: 654  EDVSSTFHNENASLAELQKLPKLTALELQIRETWMLPRDLQLVFEKLERYKIAIGDVWDW 713

Query: 422  E-----TMRTLKLKLNSVSICSKKLQG-IKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKH 475
                  T+ TL LKL +       ++  IK VE L L+ +  ++NVL  L+ EGF+ LKH
Sbjct: 714  SDIKDGTLNTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLPHLNREGFTLLKH 773

Query: 476  LHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRV 535
            LHVQNN +   IVD+KER  +  +FPILE+L L NL  LE IC  + SV SF  L  I+V
Sbjct: 774  LHVQNNTNLNHIVDNKERNQIHASFPILETLVLLNLRNLEHICHGQPSVASFGSLSVIKV 833

Query: 536  EHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDA---IDHQRIEFGQLRT 592
            ++C QL  +F  +  K L  L +I V  C +++EI   D +  A   I  ++IEF QLR+
Sbjct: 834  KNCVQLKYLFSFTMVKGLSHLSKIEVCECNSMKEIVFRDNDSSANNDITDEKIEFLQLRS 893

Query: 593  LCLGSLPELTSFCCG-VKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEV- 650
            L L  L  L +F    +  +R  +  H+          +    ++  FN +V+  NL+  
Sbjct: 894  LTLEHLKTLDNFASDYLTHHRSKEKYHDV---------EPYASTTPFFNAQVSFPNLDTL 944

Query: 651  LEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRH 710
               + +N+ K+W         +C  NLT LI+  C  LKY+FS++++ SF +L+HLEI +
Sbjct: 945  KLSSLLNLNKVWDEN---HQSMC--NLTSLIVDNCVGLKYLFSSTLVESFMNLKHLEISN 999

Query: 711  CKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSAC 770
            C  +++II+KE  ++ V     FL++  +IL  +  LK ++      ++   K+L+V+ C
Sbjct: 1000 CPIMEDIITKEDRNNAV-KEVHFLKLEKMILKDMDSLKTIWH----RQFETSKMLEVNNC 1054

Query: 771  DQ-VTVFDSELFSFFKSSEE 789
             + V VF S + + +   E+
Sbjct: 1055 KKIVVVFPSSMQNTYNELEK 1074

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344271|ref|XP_003636214.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502149|gb|AES83352.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 300/799 (37%), Positives = 458/799 (57%), Gaps = 44/799 (5%)

Query: 7    FSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNK-SVP 65
            F + +++E E W LF+ +A D V++   K    +VA  C GLP+ + T+A A++NK  V 
Sbjct: 303  FKVKLMSENETWSLFQFMAGDVVKDSNLKDLPFQVAIKCAGLPLRVVTVACAMKNKRDVQ 362

Query: 66   EWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSL-LGNSICTSYL 124
             WK AL++L+  S  + E  P   YS +ELS+ +L+ ++++ +F+L +L LG SI   Y 
Sbjct: 363  YWKDALRKLQ--SNDHTEMDPG-TYSALELSYNSLESDEMRDLFLLFALMLGESI--EYY 417

Query: 125  FQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIAC 184
             +  MGL +L+ +N ++DARN+LY ++  L  +CLLLE  +   + MHD +RD AISIAC
Sbjct: 418  LKVAMGLDLLKHINAMDDARNRLYTIIKSLEATCLLLEVKTGGNIQMHDFVRDFAISIAC 477

Query: 185  REQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFD 244
            R++H  L +  D  +WP     K C  I L  C +HE P+ ++CP ++  ++  K+   +
Sbjct: 478  RDKHVFLRKQSDE-KWPTKDFFKRCTQIVLDRCDMHEFPQMIDCPNIKLFYLISKNQSLE 536

Query: 245  INNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLE 304
            I  P  FF GMR LRV+D TR  LL LP+S   L  LQTLCL  C+L+++  I  L+NLE
Sbjct: 537  I--PDTFFEGMRSLRVLDLTRWNLLSLPTSFRFLTELQTLCLDYCILENMDAIEALQNLE 594

Query: 305  ILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWD 364
            IL  W S ++KLP E+G L +LR LDLS+   ++V+ PN+IS L +LEELYM N  + W+
Sbjct: 595  ILRLWKSSMIKLPREIGRLIRLRMLDLSHS-GIEVVPPNIISSLTKLEELYMGNTSINWE 653

Query: 365  DEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGF--FARKLERLSWALFAIDDHE 422
            D        NA L EL  LP+L  LE+ ++   +LP        KLER   A+  + D  
Sbjct: 654  DVSSTVHNENASLAELRKLPKLTALELQIRETWMLPRDLQLVFEKLERYKIAIGDVWDWS 713

Query: 423  -----TMRTLKLKLNSVSICSKKLQG-IKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHL 476
                 T++TL LKL +       ++  IK VE L L+ +  ++NVL  L+ EGF+ LKHL
Sbjct: 714  DIKDGTLKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLPHLNREGFTLLKHL 773

Query: 477  HVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVE 536
            HVQNN +   IVD+KER  +  +FPILE+L L NL  LE IC  + SV SF  L  I+V+
Sbjct: 774  HVQNNTNLNHIVDNKERNQIHASFPILETLVLLNLRNLEHICHGQPSVASFGSLSVIKVK 833

Query: 537  HCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDA---IDHQRIEFGQLRTL 593
            +C QL  +F  +  K L  L +I V  C +++EI   D    A   I  ++IEF QLR+L
Sbjct: 834  NCVQLKYLFSFTMVKGLSHLCKIEVCECNSMKEIVFRDNNSSANNDITDEKIEFLQLRSL 893

Query: 594  CLGSLPELTSFCCG-VKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEV-L 651
             L  L  L +F    +  +R  +  H+          +    ++  FN +V+  NL+   
Sbjct: 894  TLEHLKTLDNFASDYLTHHRSKEKYHDV---------EPYASTTPFFNAQVSFPNLDTLK 944

Query: 652  EMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHC 711
              + +N+ K+W         +C  NLT LI+  C  LKY+FS++++ SF +L+HLEI +C
Sbjct: 945  LSSLLNLNKVWDEN---HQSMC--NLTSLIVDNCVGLKYLFSSTLVESFMNLKHLEISNC 999

Query: 712  KGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACD 771
              +++II+KE  ++ V     FL++  +IL  +  LK ++      ++   K+L+V+ C 
Sbjct: 1000 PIMEDIITKEDRNNAV-KEVHFLKLEKIILKDMDSLKTIWH----RQFETSKMLEVNNCK 1054

Query: 772  Q-VTVFDSELFSFFKSSEE 789
            + V VF S + + +   E+
Sbjct: 1055 KIVVVFPSSMQNTYNELEK 1073

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	806
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.734	0.644	0.267	2e-43
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.735	0.602	0.254	2.7e-38
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.320	0.283	0.299	1.7e-33
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.326	0.295	0.292	9.4e-26
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.645	0.613	0.260	6.4e-25
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.317	0.288	0.313	1.8e-20
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.433	0.394	0.263	2.1e-20
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.310	0.263	0.256	6.9e-20
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.430	0.385	0.257	7.7e-20
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.424	0.383	0.273	1.5e-19

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 167/625 (26%), Positives = 274/625 (43%)

Query:     1 MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
             M + +N  +  L E+EAW LF     +   +   K  A +V+  C GLP+A+ TI R LR
Sbjct:   261 MMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLR 320

Query:    61 NK-SVPEWKSALQEL-RMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN- 117
              K  V  WK  L  L R    ++ E    + + T++LS+  L+ + +K  F+ C+L    
Sbjct:   321 GKPQVEVWKHTLNLLKRSAPSIDTE---EKIFGTLKLSYDFLQ-DNMKSCFLFCALFPED 376

Query:   118 -SICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIR 176
              SI  S L    +  G+L   +  ED  N+   LV  L+DSCLL +GDS   + MHDV+R
Sbjct:   377 YSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVR 436

Query:   177 DVAISIACREQ---HAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEG-LECPRLE 232
             D AI     +    H++++    + E+P D  +     +SL    +  LP   +E     
Sbjct:   437 DFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETL 496

Query:   233 FLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQXXXXXXXXXXXXXXQTLCLVECM-L 291
              L +     + ++ N   F      LR++D + ++              ++L L  C  L
Sbjct:   497 VLLLQGNSHVKEVPN--GFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKL 554

Query:   292 DDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRL 351
              ++  +  L  L+ L    S I +LP  L  L+ LR + +SN ++L+ I    I +L  L
Sbjct:   555 RNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSL 614

Query:   352 EELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGF--FARKLE 409
             E L M+     W  +G   E   A LDE+  LP L  L + + +       F    ++L 
Sbjct:   615 EVLDMAGSAYSWGIKGEEREG-QATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTKRLT 673

Query:   410 RLSWALFAIDDHETMRTLK--LKLNSVSICSKK----LQGIKDVEYLCLEKLQDVKNVLF 463
             +  +    I       T +  L ++ V++ +      LQ +  ++    E L  +   L 
Sbjct:   674 KFQFLFSPIRSVSPPGTGEGCLAISDVNVSNASIGWLLQHVTSLDLNYCEGLNGMFENLV 733

Query:   464 DLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ-DRL 522
                   F  +K L +   P        + ++   D FP LE L+L N + LE I + +  
Sbjct:   734 TKSKSSFVAMKALSIHYFPSLSLASGCESQL---DLFPNLEELSLDN-VNLESIGELNGF 789

Query:   523 SVQSFNELKTIRVEHCDQLSNIFLLSA-AKCLPRLERIAVINCRNIQEIFAVDG-EYDAI 580
                   +LK ++V  C QL  +F     A  LP L+ I V++C  ++E+F       D  
Sbjct:   790 LGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPVDFC 849

Query:   581 DHQRIEFGQLRTLCLGSLPELTSFC 605
                 +   +L  + L  LP+L S C
Sbjct:   850 AESLLP--KLTVIKLKYLPQLRSLC 872

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
 Identities = 160/629 (25%), Positives = 289/629 (45%)

Query:     1 MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
             M +  +  +D L EE+AW LF   A D V +   +  A  V+Q C GLP+A+ T+  A+R
Sbjct:   291 MKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMR 350

Query:    61 NK-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN-- 117
              K +V  W   L +L   S    + +  + +  ++LS+  L+ ++ K  F+LC+L     
Sbjct:   351 GKKNVKLWNHVLSKLSK-SVPWIKSIEEKIFQPLKLSYDFLE-DKAKFCFLLCALFPEDY 408

Query:   118 SICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRD 177
             SI  + + +  M  G ++++   ED+ N+    V  L+D CLL +GD    + MHDV+RD
Sbjct:   409 SIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRD 468

Query:   178 VAISIACREQ---HAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLE--CPRLE 232
              AI I    Q   H++++    + +   D        +SL    +  LP+ +E  C +  
Sbjct:   469 FAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTS 528

Query:   233 FLHINPKDSLFDINNPCNFFTGMRKLRVVDF--TRMQXXXXXXXXXXXXXXQTLCLVECM 290
              L +     L ++  P  F      LR+++   TR++               +L L +C 
Sbjct:   529 VLLLQGNFLLKEV--PIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSL-HSLFLRDCF 585

Query:   291 -LDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLV 349
              L  +  +  L  LE+L   G+ I++ P  L  L + R LDLS    L+ I   V+SRL 
Sbjct:   586 KLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLS 645

Query:   350 RLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVL--PEGFFARK 407
              LE L M++    W  +G  +++  A ++E+  L RL  L + + +   L      + ++
Sbjct:   646 SLETLDMTSSHYRWSVQG-ETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKR 704

Query:   408 LERLSWAL---FAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFD 464
             L++    +   + +      R L +   +VS  S     +     L L   Q ++ ++  
Sbjct:   705 LKKFQLVVGSRYILRTRHDKRRLTISHLNVSQVSIGWL-LAYTTSLALNHCQGIEAMMKK 763

Query:   465 L--DTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI-KLERICQDR 521
             L  D +GF  LK L ++N      I+++   V +       +S ++ +L+  LE +   R
Sbjct:   764 LVSDNKGFKNLKSLTIEN-----VIINTNSWVEMVSTNTSKQSSDILDLLPNLEELHLRR 818

Query:   522 LSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIF-----AVDGE 576
             + +++F+EL+T      + L  I +    K    L++   +   N++EI      ++   
Sbjct:   819 VDLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSLQNL 878

Query:   577 YDAIDHQRIEFGQLRTLCLGSLPELTSFC 605
             ++A+ + +     LR L L +LP L S C
Sbjct:   879 HEALLYHQPFVPNLRVLKLRNLPNLVSIC 907

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
 Identities = 82/274 (29%), Positives = 138/274 (50%)

Query:     1 MGSQKNFSIDILNEEEAWRLF--KLVADDHVENREFKSTATEVAQACKGLPIALTTIARA 58
             MG++    ++ L ++ AW LF  K+   D +E+   +  A  +   C GLP+AL T+  A
Sbjct:   299 MGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGA 358

Query:    59 LRNKSVPE-WKSALQEL-RMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLG 116
             + ++   E W  A + L R P+E+  +G+    ++ ++ S+ NL+ + L+  F+ C+L  
Sbjct:   359 MAHRETEEEWIHASEVLTRFPAEM--KGMNY-VFALLKFSYDNLESDLLRSCFLYCALFP 415

Query:   117 --NSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDV 174
               +SI    L +  +G G L   + +     K Y L+ +L+ +CLL  GD   ++ MH+V
Sbjct:   416 EEHSIEIEQLVEYWVGEGFLTSSHGVNTIY-KGYFLIGDLKAACLLETGDEKTQVKMHNV 474

Query:   175 IRDVAISIACRE---QHAVLVR-NEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
             +R  A+ +A  +   +  +LV  +    E P     ++   ISL    I  LPE L CP+
Sbjct:   475 VRSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPK 534

Query:   231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFT 264
             L  L +    SL  I  P  FF  M  LRV+D +
Sbjct:   535 LTTLMLQQNSSLKKI--PTGFFMHMPVLRVLDLS 566

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 9.4e-26, Sum P(2) = 9.4e-26
 Identities = 81/277 (29%), Positives = 131/277 (47%)

Query:     1 MGSQKNFSIDILNEEEAWRLFKLVADDHV--ENREFKSTATEVAQACKGLPIALTTIARA 58
             MG      +  L  EE+W LF++    +    + +    A +VA+ C+GLP+AL  I  A
Sbjct:   302 MGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEA 361

Query:    59 LRNK-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN 117
             +  K +V EW  A+  L   S ++F G+  E    ++ S+ NL GE +K  F+ CSL   
Sbjct:   362 MACKRTVHEWCHAIDVLTS-SAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPE 420

Query:   118 S--ICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQE-LSMHDV 174
                I    L    +  G + +    E   N+ Y ++  L  +CLLLE + N+  + MHDV
Sbjct:   421 DYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDV 480

Query:   175 IRDVAISIAC---REQHAVLVR-NEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
             +R++A+ I+    +++   +VR    + E P          ISL    I E+ +  EC  
Sbjct:   481 VREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSHECAA 540

Query:   231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQ 267
             L  L +  K+ +  I+    FF  M  L V+D +  Q
Sbjct:   541 LTTLFLQ-KNDVVKIS--AEFFRCMPHLVVLDLSENQ 574

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 6.4e-25, Sum P(2) = 6.4e-25
 Identities = 146/561 (26%), Positives = 244/561 (43%)

Query:     1 MGSQKNFSIDILNEEEAWRLFKLVADDHV--ENREFKSTATEVAQACKGLPIALTTIARA 58
             M + K   +D L+ +EAW LF+L   D +   +++  + A  VA  C GLP+AL  I +A
Sbjct:   297 MKADKQIKVDCLSPDEAWELFRLTVGDIILRSHQDIPALARIVAAKCHGLPLALNVIGKA 356

Query:    59 LRNK-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN 117
             +  K +V EW+ A+  L  P    F G+       ++ S+ +LK  ++K  F+ CSL   
Sbjct:   357 MVCKETVQEWRHAINVLNSPGH-KFPGMEERILPILKFSYDSLKNGEIKLCFLYCSLFPE 415

Query:   118 S--ICTSYLFQCCMGLGILQKVNKLEDA-RNKLYALVHELRDSCLLLEGDSNQELSMHDV 174
                I    L +  +  G +   N+ ED   N+ Y ++  L  + LL+E +   ++ MHDV
Sbjct:   416 DFEIEKDKLIEYWICEGYINP-NRYEDGGTNQGYDIIGLLVRAHLLIECELTDKVKMHDV 474

Query:   175 IRDVAISIAC---REQHAVLVRN-EDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
             IR++A+ I      +Q  + V++   V   P+DI+ +    +SL    + ++     CP 
Sbjct:   475 IREMALWINSDFGNQQETICVKSGAHVRLIPNDISWEIVRQMSLISTQVEKIACSPNCPN 534

Query:   231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDF-TRMQXXXXXXXXXXXXXXQTLCLVEC 289
             L  L + P + L DI+    FF  M KL V+D  T                 Q L L   
Sbjct:   535 LSTLLL-PYNKLVDIS--VGFFLFMPKLVVLDLSTNWSLIELPEEISNLGSLQYLNLSLT 591

Query:   290 MLDDIAIIGKLKNLEILSFWGSGIVKLPEEL-GHLTKLRQLDLSNCF-KLKVIAPNVISR 347
              +  + + G LK L  L +       + E L G  T L  L +   F  L  +   ++  
Sbjct:   592 GIKSLPV-G-LKKLRKLIYLNLEFTNVLESLVGIATTLPNLQVLKLFYSLFCVDDIIMEE 649

Query:   348 LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARK 407
             L RL+ L +    +E   +    ER+   +D L    R   L  ++    V+        
Sbjct:   650 LQRLKHLKILTATIE---DAMILERVQG-VDRLASSIRGLCLR-NMSAPRVILNSVALGG 704

Query:   408 LERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDT 467
             L++L      I + E     K + +  S  S   + +  +  + L   +D+  +LF    
Sbjct:   705 LQQLGIVSCNISEIEIDWLSKERRDHRSTSSPGFKQLASITVIGLVGPRDLSWLLFA--- 761

Query:   468 EGFSQLKHLHVQNNPDFMCIVDSKE-----RVPLDDAFPI--LESLNLYNLIKLERICQD 520
                  LK + VQ +P    I++ ++     +V  D   P   LESL+LY L +L  IC +
Sbjct:   762 ---QNLKDIQVQYSPTIEEIINKQKGMSITKVHRDIVVPFGKLESLHLYQLAELTEICWN 818

Query:   521 RLSVQSFNELKTIRVEHCDQL 541
                 Q+   L+   V +C +L
Sbjct:   819 ---YQTLPNLRESYVNYCPKL 836

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
 Identities = 86/274 (31%), Positives = 141/274 (51%)

Query:     1 MGSQKNFSIDILNEEEAWRLF-KLVADDHVENR-EFKSTATEVAQACKGLPIALTTIARA 58
             MG   +  +  L  ++AW LF K V +  + +  E  + A  VA+ C+GLP+AL  I   
Sbjct:   300 MGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGET 359

Query:    59 LRNK-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLL-- 115
             +  K +V EW+SA+  L   S   F G+  E    ++ S+ NLK EQLK  F  C+L   
Sbjct:   360 MAYKRTVQEWRSAIDVLTS-SAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPE 418

Query:   116 GNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQE-LSMHDV 174
              ++I  + L    +G G + + NK + A N+ Y ++  L  SCLL+E   NQE + MHDV
Sbjct:   419 DHNIEKNDLVDYWIGEGFIDR-NKGK-AENQGYEIIGILVRSCLLME--ENQETVKMHDV 474

Query:   175 IRDVAISIAC----REQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPR 230
             +R++A+ IA     ++++ ++         P+    K    +SL   +I  + +  E P+
Sbjct:   475 VREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQ 534

Query:   231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFT 264
             L  L +  K+ L  I++  +FF  M  L V+D +
Sbjct:   535 LITLLLR-KNFLGHISS--SFFRLMPMLVVLDLS 565

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
 Identities = 97/368 (26%), Positives = 160/368 (43%)

Query:     1 MGSQKNFSIDILNEEEAWRLFKL-VADDHVENR-EFKSTATEVAQACKGLPIALTTIARA 58
             MG      +  L  ++AW LFK  V D  + +  +    A +VAQAC GLP+AL  I   
Sbjct:   301 MGVHDPMEVRCLGADDAWDLFKKKVGDITLSSHPDIPEIARKVAQACCGLPLALNVIGET 360

Query:    59 LR-NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN 117
             +   K+  EW  A+ ++      NF  V       ++ S+ NL+ E +K  F+ CSL   
Sbjct:   361 MACKKTTQEWDRAV-DVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFLYCSLFPE 419

Query:   118 S--ICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGD--SNQE-LSMH 172
                I    L    +  G +      + A  + Y ++  L  + LL+EG   +N+  + MH
Sbjct:   420 DDLIEKERLIDYWICEGFIDGDENKKGAVGEGYEILGTLVCASLLVEGGKFNNKSYVKMH 479

Query:   173 DVIRDVAISIAC---REQHAVLVR-NEDVWEWPDDIALKECYAISLRGCSIHELPEGLEC 228
             DV+R++A+ IA    + +   +VR    + E P     K    +SL    I E+    EC
Sbjct:   480 DVVREMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSPEC 539

Query:   229 PRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFT-RMQXXXXXXXXXXXXXXQTLCLV 287
             P+L  L +     L +I+    FF  M +L V+D +  +               + L L 
Sbjct:   540 PKLTTLFLQDNRHLVNISG--EFFRSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDLS 597

Query:   288 ECMLDDIAI-IGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVIS 346
                +  + + + KLK L  L+      ++    + HL+ L+ + L N      I+  ++ 
Sbjct:   598 YSSIGRLPVGLLKLKKLMHLNLESMLCLESVSGIDHLSNLKTVRLLNLRMWLTIS--LLE 655

Query:   347 RLVRLEEL 354
              L RLE L
Sbjct:   656 ELERLENL 663

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 6.9e-20, Sum P(4) = 6.9e-20
 Identities = 67/261 (25%), Positives = 120/261 (45%)

Query:     9 IDILNEEEAWRLFKLVADDHV--ENREFKSTATEVAQACKGLPIALTTIARALRNK-SVP 65
             I  L+ EEAW LF+    ++    +++    A  VA  C+GLP+AL  I  A+  K +V 
Sbjct:   298 ITCLSPEEAWDLFQETVGENTLRSHQDIPKLARVVASTCRGLPLALNLIGEAMSGKRTVR 357

Query:    66 EWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNS--ICTSY 123
             EW+  +  L   S   F  +       ++  + N+  E ++  F+ C+L   +  I    
Sbjct:   358 EWRYTIHVLAS-STAEFPDMEDGTLPILKSIYDNMSDEIIRLCFLYCALFPENLDIGKED 416

Query:   124 LFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVIRDVAISIA 183
             L    +  GIL K ++ E+A  + Y ++ +L    LL+E  +   + MH ++R++A+ IA
Sbjct:   417 LVNYWICEGILAKEDR-EEAEIQGYEIICDLVRMRLLMESGNGNCVKMHGMVREMALWIA 475

Query:   184 CREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLF 243
                +H V+V  E + +  +    +    +S+    I  + +  +C  L  L       L 
Sbjct:   476 --SEHFVVVGGERIHQMLNVNDWRMIRRMSVTSTQIQNISDSPQCSELTTLVFRRNRHLK 533

Query:   244 DINNPCNFFTGMRKLRVVDFT 264
              I+    FF  M  L V+D +
Sbjct:   534 WISGA--FFQWMTGLVVLDLS 552

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
 Identities = 94/365 (25%), Positives = 160/365 (43%)

Query:     1 MGSQKNFSIDILNEEEAWRLFKLVADDHVENRE--FKSTATEVAQACKGLPIALTTIARA 58
             MG  K   ++ L  E+AW LFK    D+  + +      A EVAQ C+GLP+AL  I   
Sbjct:   298 MGDHKPMQVNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGET 357

Query:    59 LRNKS-VPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLL-- 115
             + +K+ V EW+ A+      S   F  +  +    ++ S+ +L  E +K  F+ C+L   
Sbjct:   358 MSSKTMVQEWEHAIHVFNT-SAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPE 416

Query:   116 GNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELSMHDVI 175
                I    L    +  G + +   ++ ARNK YA++  L  + LL +  +   + MHDV+
Sbjct:   417 DGEIYNEKLIDYWICEGFIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTYYCV-MHDVV 475

Query:   176 RDVAISIAC----REQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRL 231
             R++A+ IA     ++++ V+     + E P          +SL    I E+    +C  L
Sbjct:   476 REMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSEL 535

Query:   232 EFLHINPKDSLFDINNPCNFFTGMRKLRVVDFT-RMQXXXXXXXXXXXXXXQTLCLVECM 290
               L +   + L ++  P  F   M+KL V+D +                  Q L L    
Sbjct:   536 TTLFLQ-SNKLKNL--PGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTS 592

Query:   291 LDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAP-NVISRLV 349
             ++ + I G LK L+ L+F           +  +++L  L L      KV    +V+  L 
Sbjct:   593 IEHMPI-G-LKELKKLTFLDLTYTDRLCSISGISRLLSLRLLRLLGSKVHGDASVLKELQ 650

Query:   350 RLEEL 354
             +L+ L
Sbjct:   651 QLQNL 655

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 103/376 (27%), Positives = 160/376 (42%)

Query:     1 MGSQKNFSIDILNEEEAWRLFK-LVADDHVENR-EFKSTATEVAQACKGLPIALTTIARA 58
             MG      +  L+  +AW LF+  V    + +  +    A +VA  C+GLP+AL  I   
Sbjct:   299 MGVHDPMEVQCLSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGET 358

Query:    59 LRNK-SVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGN 117
             +  K +V EW  A+  L   +   F G+       ++ S+ NL  + ++  F  C+L   
Sbjct:   359 MAGKRAVQEWHHAVDVLTSYA-AEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPE 417

Query:   118 --SICTSYL--FQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQ-ELSMH 172
               SI    L  +  C G  I   + K E A N+ Y ++  L  +CLL E   N+ E+ MH
Sbjct:   418 DYSIKKYRLIDYWICEGF-IDGNIGK-ERAVNQGYEILGTLVRACLLSEEGKNKLEVKMH 475

Query:   173 DVIRDVAI----SIACREQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLEC 228
             DV+R++A+     +   ++  ++     + + P          +SL    I E+    EC
Sbjct:   476 DVVREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPEC 535

Query:   229 PRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRM-QXXXXXXXXXXXXXXQTLCLV 287
             P L  L +    SL  I+    FF  MRKL V+D +   Q              + L L 
Sbjct:   536 PELTTLFLQENKSLVHISG--EFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLS 593

Query:   288 ECMLDDI-AIIGKLK-----NLEILSFWGS--GIVKLPEELGHLTKLRQLDLSNC-FKLK 338
                ++ + A +  LK     NLE +   GS  GI KL       + LR L L N    L 
Sbjct:   594 HTNIEGLPACLQDLKTLIHLNLECMRRLGSIAGISKL-------SSLRTLGLRNSNIMLD 646

Query:   339 VIAPNVISRLVRLEEL 354
             V++   +  L  LE L
Sbjct:   647 VMSVKELHLLEHLEIL 662

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	806
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-11
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDH--VENREFKSTATEVAQACKGLPIALTTIARA 58
            G+ K   ++ L  EE+W LF     +       E +  A E+ + CKGLP+AL  +   
Sbjct: 145 GGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGL 204

Query: 59  LRNKS-VPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLL 115
           L  KS V EW+  L++L        +G+  E  S + LS+ NL    LK+ F+  +L 
Sbjct: 205 LAFKSTVQEWEHVLEQLN-NELAGRDGL-NEVLSILSLSYDNLP-MHLKRCFLYLALF 259

Length = 285

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 302 NLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
           NL+ L    + +  +P+     L  L+ LDLS    L  I+P   S L  L  L +S  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 11/184 (5%)

Query: 213 SLRGCSIHELPEGLECPRLEFLHIN--PKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL 270
           SL            E   L  L       +++ DI            L+ +D +  ++  
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLK--SNLKELDLSDNKIES 154

Query: 271 LPSSIDLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQL 329
           LPS +  L NL+ L L    L D+  ++  L NL  L   G+ I  LP E+  L+ L +L
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEEL 214

Query: 330 DLSNCFKLKVIAPNVISRLVRLEELYMSN----CFVEWDDEGPNSERINARLDELMHLPR 385
           DLSN     +   + +S L  L  L +SN       E      N E ++   +++  +  
Sbjct: 215 DLSN--NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272

Query: 386 LATL 389
           L +L
Sbjct: 273 LGSL 276

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 88/348 (25%), Positives = 144/348 (41%), Gaps = 52/348 (14%)

Query: 34  FKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFEGVPAEAYSTI 93
           F   A+EVA     LP+ L  +   LR +   +W   L  LR        G+  +   T+
Sbjct: 374 FMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR-------NGLDGKIEKTL 426

Query: 94  ELSFKNLKGEQLKKIF--MLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALV 151
            +S+  L  ++ K IF  + C   G  +    L      L +   +  L D      +L+
Sbjct: 427 RVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDK-----SLI 481

Query: 152 HELRDSCLLLEGDSNQELSMHDVIRDVAISIACREQ------HAVLVRNEDVWE-WPDDI 204
           H   D            + MH +++++   I  R Q         LV  +D+ +   D+ 
Sbjct: 482 HVREDI-----------VEMHSLLQEMGKEIV-RAQSNEPGEREFLVDAKDICDVLEDNT 529

Query: 205 ALKECYAISL-----RGCSIHELP-EGLECPRLEFLHINPK--DSLFDI--NNPCNFFTG 254
             K+   I+L         IHE   +G+    L FL    K  D   ++  + P  F   
Sbjct: 530 GTKKVLGITLDIDEIDELHIHENAFKGMR--NLLFLKFYTKKWDQKKEVRWHLPEGFDYL 587

Query: 255 MRKLRVVDFTRMQLLLLPSSI--DLLVNLQTL-CLVECMLDDIAIIGKLKNLEILSFWGS 311
             KLR++ + +  L  +PS+   + LV LQ     +E + D +  +  L+N+++    GS
Sbjct: 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL---RGS 644

Query: 312 GIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
             +K   +L   T L  L LS+C  L V  P+ I  L +LE+L MS C
Sbjct: 645 KNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRC 691

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	806
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.43
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.33
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.32
KOG4341	483	consensus F-box protein containing LRR [General fu	99.11
KOG4341	483	consensus F-box protein containing LRR [General fu	99.1
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.56
PRK15386	426	type III secretion protein GogB; Provisional	98.53
PRK15386	426	type III secretion protein GogB; Provisional	98.46
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
PLN03150	623	hypothetical protein; Provisional	98.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.39
PLN03150	623	hypothetical protein; Provisional	98.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.2
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.01
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.87
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.77
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.76
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.28
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.7
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.59
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.01
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.78
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.26
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.09
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.65
PRK04841	903	transcriptional regulator MalT; Provisional	92.44
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.36
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.61
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.56
smart00370	26	LRR Leucine-rich repeats, outliers.	89.02
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.02
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	85.06
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.11
smart00370	26	LRR Leucine-rich repeats, outliers.	82.11
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	82.0

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-58  Score=523.55  Aligned_cols=356  Identities=30%  Similarity=0.468  Sum_probs=270.2

Q ss_pred             CCCcceeeCCCCCHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHccCChhHHHHHHHHhcCC-ChhHHHHHHHHhcCC
Q 003639            1 MGSQKNFSIDILNEEEAWRLFKLVADDH--VENREFKSTATEVAQACKGLPIALTTIARALRNK-SVPEWKSALQELRMP   77 (806)
Q Consensus         1 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~-~~~~W~~~l~~~~~~   77 (806)
                      ||+...+++++|+.+|||+||+++|++.  ...+.++++|++||+||+|||||+++||+.|+.| +.++|+++.+.+.+.
T Consensus       306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~  385 (889)
T KOG4658|consen  306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS  385 (889)
T ss_pred             ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence            7888999999999999999999999542  3345599999999999999999999999999999 889999999988632


Q ss_pred             CCCCCCCCchhhHhHHHHhhccCCchhHHHHHHHHhhcC--CCCChhHHHHHhhhcccccccccHHHHHHHHHHHHHHHH
Q 003639           78 SEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLG--NSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELR  155 (806)
Q Consensus        78 ~~~~~~~~~~~i~~~L~lsY~~L~~~~lk~cfl~~s~fp--~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~~L~  155 (806)
                      ..-+..+..+.|+++|++||++||.+ +|.||+|||+||  |.|++++||.+||||||+++....+.+++.+++|+.+|+
T Consensus       386 ~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV  464 (889)
T KOG4658|consen  386 LAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV  464 (889)
T ss_pred             ccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence            22334455778999999999999966 999999999999  999999999999999999885556778888888999999


Q ss_pred             hcccccccC---CCCceeecHHHHHHHHHHHh-----hcCceEEecCcccCCCCccccccccEEEEEeCCCCCCCCCCCC
Q 003639          156 DSCLLLEGD---SNQELSMHDVIRDVAISIAC-----REQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLE  227 (806)
Q Consensus       156 ~~~l~~~~~---~~~~~~mHdli~~l~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~  227 (806)
                      ++++++..+   ....|+|||+|||+|.++|.     +|+.++..+ .+....+....+..+|++++.++.+..++....
T Consensus       465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~-~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~  543 (889)
T KOG4658|consen  465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG-VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE  543 (889)
T ss_pred             HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC-cCccccccccchhheeEEEEeccchhhccCCCC
Confidence            999999775   33679999999999999999     666444332 233334555556789999999999999999889


Q ss_pred             CCCccEEEecCCCC-cccccCCChhhhcCCCceEEEeecC-CCccCCcccccccCCcEEEecCcCCCCchhhcCCCccce
Q 003639          228 CPRLEFLHINPKDS-LFDINNPCNFFTGMRKLRVVDFTRM-QLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEI  305 (806)
Q Consensus       228 ~~~Lr~L~l~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~  305 (806)
                      +++|++|.+.+|.. ...+  +..+|..++.||+|||++| .+.++|++|+.|.|||||+++++.+              
T Consensus       544 ~~~L~tLll~~n~~~l~~i--s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--------------  607 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEI--SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--------------  607 (889)
T ss_pred             CCccceEEEeecchhhhhc--CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--------------
Confidence            99999999999863 5666  7777899999999999975 4555777766666666666666554              


Q ss_pred             EeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCC
Q 003639          306 LSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPR  385 (806)
Q Consensus       306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~  385 (806)
                              +.+|.++++|++|++|++..+..+..+|. ++..|++||+|.+......         .....+.++.++.+
T Consensus       608 --------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  608 --------SHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS---------NDKLLLKELENLEH  669 (889)
T ss_pred             --------cccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccc---------cchhhHHhhhcccc
Confidence                    45555555555555555554443333322 2444555555555433211         11233445555555


Q ss_pred             CcEEEEE
Q 003639          386 LATLEVH  392 (806)
Q Consensus       386 L~~L~l~  392 (806)
                      |+.+.+.
T Consensus       670 L~~ls~~  676 (889)
T KOG4658|consen  670 LENLSIT  676 (889)
T ss_pred             hhhheee
Confidence            5555543

>PLN03210 Resistant to P

Probab=100.00  E-value=3.2e-51  Score=494.89  Aligned_cols=547  Identities=21%  Similarity=0.286  Sum_probs=365.3

Q ss_pred             CCCcceeeCCCCCHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHHccCChhHHHHHHHHhcCCChhHHHHHHHHhcCCCC
Q 003639            1 MGSQKNFSIDILNEEEAWRLFKLVA-DDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSE   79 (806)
Q Consensus         1 ~~~~~~~~l~~L~~~~~~~Lf~~~a-~~~~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~~~~~W~~~l~~~~~~~~   79 (806)
                      ++++++|+|+.|+++|||+||+++| +...+++++++++++||++|+|+||||+++|+.|++++..+|+++++++.    
T Consensus       340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~----  415 (1153)
T PLN03210        340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR----  415 (1153)
T ss_pred             cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH----
Confidence            3578899999999999999999999 44445678999999999999999999999999999999999999999986    


Q ss_pred             CCCCCCchhhHhHHHHhhccCCchhHHHHHHHHhhcCCCCChhHHHHHhhhcccccccccHHHHHHHHHHHHHHHHhccc
Q 003639           80 VNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCL  159 (806)
Q Consensus        80 ~~~~~~~~~i~~~L~lsY~~L~~~~lk~cfl~~s~fp~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~~L~~~~l  159 (806)
                      .   ..+.+|.++|++||++|+++..|.||+|+|+||...+++. +..|.|.+.....           ..++.|+++||
T Consensus       416 ~---~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~~-----------~~l~~L~~ksL  480 (1153)
T PLN03210        416 N---GLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDVN-----------IGLKNLVDKSL  480 (1153)
T ss_pred             h---CccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCch-----------hChHHHHhcCC
Confidence            2   2345799999999999986435999999999995555554 5666766544321           12889999999


Q ss_pred             ccccCCCCceeecHHHHHHHHHHHhhcCceEEecCcccCCCCccc---------cccccEEEEEeCCCCCCCC----CCC
Q 003639          160 LLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDI---------ALKECYAISLRGCSIHELP----EGL  226 (806)
Q Consensus       160 ~~~~~~~~~~~mHdli~~l~~~~~~~e~~~~~~~~~~~~~~~~~~---------~~~~lr~l~l~~~~~~~l~----~~~  226 (806)
                      ++..  .++++|||++|+||+++++++..   ..+.+...|...+         -.++++.+++....+..+.    .+.
T Consensus       481 i~~~--~~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~  555 (1153)
T PLN03210        481 IHVR--EDIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK  555 (1153)
T ss_pred             EEEc--CCeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence            9865  45799999999999999987641   1111222222211         1345677777655553321    145


Q ss_pred             CCCCccEEEecCCC------CcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhcC
Q 003639          227 ECPRLEFLHINPKD------SLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGK  299 (806)
Q Consensus       227 ~~~~Lr~L~l~~~~------~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~  299 (806)
                      .+++|+.|.+..+.      ....+  |..+..-..+||.|++.++.+..+|..+ ...+|+.|++++|.+.. +..+..
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~l--p~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~  632 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHL--PEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS  632 (1153)
T ss_pred             cCccccEEEEecccccccccceeec--CcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence            67777777765432      11223  4444222345777777777777777666 45677777777777666 666667


Q ss_pred             CCccceEeccCC-CCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhcccc
Q 003639          300 LKNLEILSFWGS-GIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLD  378 (806)
Q Consensus       300 L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  378 (806)
                      +++|++|+++++ .+..+|. ++.+++|++|++.+|..+..+|.. ++++++|++|++++|.....           .+.
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~-----------Lp~  699 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEI-----------LPT  699 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCc-----------cCC
Confidence            777777777765 4556653 666777777777777666677765 67777777777766543211           111


Q ss_pred             ccCCCCCCcEEEEEecCC-CcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccccccceeeeeccccCC
Q 003639          379 ELMHLPRLATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQD  457 (806)
Q Consensus       379 ~L~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~  457 (806)
                      .+ ++++|+.|+++++.. ..+|.                                         ...+|+.|++.++. 
T Consensus       700 ~i-~l~sL~~L~Lsgc~~L~~~p~-----------------------------------------~~~nL~~L~L~~n~-  736 (1153)
T PLN03210        700 GI-NLKSLYRLNLSGCSRLKSFPD-----------------------------------------ISTNISWLDLDETA-  736 (1153)
T ss_pred             cC-CCCCCCEEeCCCCCCcccccc-----------------------------------------ccCCcCeeecCCCc-
Confidence            11 344444444443321 00000                                         02234444444322 


Q ss_pred             cchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccccccccCCCCCccEEEEec
Q 003639          458 VKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEH  537 (806)
Q Consensus       458 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  537 (806)
                      ++.++..   ..+++|++|.+.++.....+ .                       .+..+.  ......+++|+.|++.+
T Consensus       737 i~~lP~~---~~l~~L~~L~l~~~~~~~l~-~-----------------------~~~~l~--~~~~~~~~sL~~L~Ls~  787 (1153)
T PLN03210        737 IEEFPSN---LRLENLDELILCEMKSEKLW-E-----------------------RVQPLT--PLMTMLSPSLTRLFLSD  787 (1153)
T ss_pred             ccccccc---ccccccccccccccchhhcc-c-----------------------cccccc--hhhhhccccchheeCCC
Confidence            2222211   12344444444433210000 0                       000000  00112357899999999


Q ss_pred             CCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccccCCcccccccCc
Q 003639          538 CDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGM  617 (806)
Q Consensus       538 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~  617 (806)
                      |+.+..+|.  .++++++|+.|++.+|..++.++.          . ..+++|+.|++++|.++..+|.           
T Consensus       788 n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~----------~-~~L~sL~~L~Ls~c~~L~~~p~-----------  843 (1153)
T PLN03210        788 IPSLVELPS--SIQNLHKLEHLEIENCINLETLPT----------G-INLESLESLDLSGCSRLRTFPD-----------  843 (1153)
T ss_pred             CCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC----------C-CCccccCEEECCCCCccccccc-----------
Confidence            888888864  467899999999999998887762          1 2678999999999988877654           


Q ss_pred             ccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhH
Q 003639          618 HETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML  697 (806)
Q Consensus       618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~  697 (806)
                                                ..++|+.|+++++.++.++..      +..+++|+.|++++|++|+.++.  ..
T Consensus       844 --------------------------~~~nL~~L~Ls~n~i~~iP~s------i~~l~~L~~L~L~~C~~L~~l~~--~~  889 (1153)
T PLN03210        844 --------------------------ISTNISDLNLSRTGIEEVPWW------IEKFSNLSFLDMNGCNNLQRVSL--NI  889 (1153)
T ss_pred             --------------------------cccccCEeECCCCCCccChHH------HhcCCCCCEEECCCCCCcCccCc--cc
Confidence                                      246899999999988876642      45789999999999999999863  45


Q ss_pred             hhhcccceEEEeccccccee
Q 003639          698 GSFEHLQHLEIRHCKGLQEI  717 (806)
Q Consensus       698 ~~l~~L~~L~i~~C~~L~~i  717 (806)
                      ..+++|+.|++++|++|..+
T Consensus       890 ~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        890 SKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             ccccCCCeeecCCCcccccc
Confidence            67899999999999998865

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-33  Score=343.05  Aligned_cols=504  Identities=18%  Similarity=0.147  Sum_probs=249.8

Q ss_pred             ccEEEEEeCCCCCCC-CC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCCcEE
Q 003639          208 ECYAISLRGCSIHEL-PE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTL  284 (806)
Q Consensus       208 ~lr~l~l~~~~~~~l-~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L~~L  284 (806)
                      +++.|+++++.+... +. +..+++|++|++++|.....+  |..++..+++||+|++++|.+.. +|.  +.+++|++|
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~i--p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI--PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcC--ChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            455566655554322 21 344556666666655444445  55554555666666666555543 332  345555555


Q ss_pred             EecCcCCCC--chhhcCCCccceEeccCCCCc-ccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcc
Q 003639          285 CLVECMLDD--IAIIGKLKNLEILSFWGSGIV-KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV  361 (806)
Q Consensus       285 ~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~  361 (806)
                      ++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence            555555543  455555555555555555443 45555555555555555555433344443 55555555555555544


Q ss_pred             cccCCCCCchhhhccccccCCCCCCcEEEEEecCCC-cCCcccc-ccccceEEEeeeecC--------ccccceEEEeec
Q 003639          362 EWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN-VLPEGFF-ARKLERLSWALFAID--------DHETMRTLKLKL  431 (806)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~~~~~~~~--------~~~~l~~l~l~~  431 (806)
                      ..           ..+..++++++|+.|++++|... .+|..+. +++|+.|.+..+...        ....++.++++.
T Consensus       225 ~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        225 SG-----------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             CC-----------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence            31           22234455555555555554432 2333221 334444433222110        012344444443


Q ss_pred             Cccc-ccccccccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccc
Q 003639          432 NSVS-ICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYN  510 (806)
Q Consensus       432 ~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  510 (806)
                      +... ..|.++..+++|+.|+++++......+..+  ..+++|+.|++.+|.....++      .....+++|+.|++.+
T Consensus       294 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDLST  365 (968)
T ss_pred             CeeccCCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEECCC
Confidence            3322 234444555666666665554433333322  345666666665553211111      0123345556666655


Q ss_pred             ccccccccccccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCccccccccccccccc
Q 003639          511 LIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQL  590 (806)
Q Consensus       511 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L  590 (806)
                      +.-...++..   ...+++|+.|++.++ ++....+ ..+..+++|+.|++.+|.....++          ..+..+++|
T Consensus       366 n~l~~~~p~~---~~~~~~L~~L~l~~n-~l~~~~p-~~~~~~~~L~~L~L~~n~l~~~~p----------~~~~~l~~L  430 (968)
T PLN00113        366 NNLTGEIPEG---LCSSGNLFKLILFSN-SLEGEIP-KSLGACRSLRRVRLQDNSFSGELP----------SEFTKLPLV  430 (968)
T ss_pred             CeeEeeCChh---HhCcCCCCEEECcCC-EecccCC-HHHhCCCCCCEEECcCCEeeeECC----------hhHhcCCCC
Confidence            4321111111   223445555555552 2222222 233445555555555554222211          223344445


Q ss_pred             ceEecCCCCCccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccc
Q 003639          591 RTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAM  670 (806)
Q Consensus       591 ~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~  670 (806)
                      +.|+++++.-...++.....   .+.+..+.        +..+.-....+.....++|+.|++++|.+....+..     
T Consensus       431 ~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~--------L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~-----  494 (968)
T PLN00113        431 YFLDISNNNLQGRINSRKWD---MPSLQMLS--------LARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-----  494 (968)
T ss_pred             CEEECcCCcccCccChhhcc---CCCCcEEE--------CcCceeeeecCcccccccceEEECcCCccCCccChh-----
Confidence            55555444321111110000   00000000        000000000111223468888888888766543332     


Q ss_pred             cccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCccccccccccccccccccccc
Q 003639          671 FLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCL  750 (806)
Q Consensus       671 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  750 (806)
                      |..+++|++|++++| +++...| ..+.++++|++|+|++|. +...+ +....       .+++|+.|++++|.-...+
T Consensus       495 ~~~l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~~~~-p~~~~-------~l~~L~~L~Ls~N~l~~~~  563 (968)
T PLN00113        495 LGSLSELMQLKLSEN-KLSGEIP-DELSSCKKLVSLDLSHNQ-LSGQI-PASFS-------EMPVLSQLDLSQNQLSGEI  563 (968)
T ss_pred             hhhhhccCEEECcCC-cceeeCC-hHHcCccCCCEEECCCCc-ccccC-ChhHh-------CcccCCEEECCCCcccccC
Confidence            457888999999885 5554422 556788899999999864 44332 22222       4788999999988766677


Q ss_pred             CCCCCcCCCCCcCEEeEecCCCceeeccc
Q 003639          751 YPGMHTSEWPALKLLDVSACDQVTVFDSE  779 (806)
Q Consensus       751 ~~~~~~~~l~sL~~L~i~~C~~L~~lp~~  779 (806)
                      |..  +.++++|+.|++++|+-...+|..
T Consensus       564 p~~--l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        564 PKN--LGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             Chh--HhcCcccCEEeccCCcceeeCCCc
Confidence            776  456789999999988877788864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.7e-33  Score=339.09  Aligned_cols=498  Identities=18%  Similarity=0.162  Sum_probs=324.3

Q ss_pred             ccccEEEEEeCCCCC-CCCC--CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCC
Q 003639          206 LKECYAISLRGCSIH-ELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNL  281 (806)
Q Consensus       206 ~~~lr~l~l~~~~~~-~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L  281 (806)
                      +++++.|++++|.+. .+|.  +..+++||+|++++|.....+  |.   +.+++|++|++++|.+.. +|..++.+++|
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~--p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI--PR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL  166 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc--Cc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence            567888888888774 5665  236788888888887655555  54   457778888888887764 77778888888


Q ss_pred             cEEEecCcCCCC--chhhcCCCccceEeccCCCCc-ccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeec
Q 003639          282 QTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIV-KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN  358 (806)
Q Consensus       282 ~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~  358 (806)
                      ++|++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++
T Consensus       167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~  245 (968)
T PLN00113        167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVY  245 (968)
T ss_pred             CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcC
Confidence            888888887654  777888888888888888766 56777888888888888877644456665 78888888888887


Q ss_pred             CcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC-cCCcccc-ccccceEEEeeeecC--------ccccceEEE
Q 003639          359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN-VLPEGFF-ARKLERLSWALFAID--------DHETMRTLK  428 (806)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~~~~~~~~--------~~~~l~~l~  428 (806)
                      |.+.           ...+..++++++|+.|+++++... .+|..+. +.+|+.|.+.++...        ....++.++
T Consensus       246 n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  314 (968)
T PLN00113        246 NNLT-----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH  314 (968)
T ss_pred             ceec-----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence            7665           223456777777888877776643 3444433 566776665443221        124677777


Q ss_pred             eecCccc-ccccccccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEe
Q 003639          429 LKLNSVS-ICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLN  507 (806)
Q Consensus       429 l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~  507 (806)
                      +..+... ..+.++..+++|+.|+++++......+..+  +.+++|+.|+++++.....++      .....+++|+.|.
T Consensus       315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p------~~~~~~~~L~~L~  386 (968)
T PLN00113        315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIP------EGLCSSGNLFKLI  386 (968)
T ss_pred             CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCC------hhHhCcCCCCEEE
Confidence            7665443 345667788999999998876655555544  568899999998874322221      1223456788888


Q ss_pred             cccccccccccccccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccc
Q 003639          508 LYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEF  587 (806)
Q Consensus       508 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l  587 (806)
                      +.++.-...++.   ....+++|+.|++.+|+ ++...+ ..+..+++|+.|+++++.....++          .....+
T Consensus       387 l~~n~l~~~~p~---~~~~~~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~----------~~~~~l  451 (968)
T PLN00113        387 LFSNSLEGEIPK---SLGACRSLRRVRLQDNS-FSGELP-SEFTKLPLVYFLDISNNNLQGRIN----------SRKWDM  451 (968)
T ss_pred             CcCCEecccCCH---HHhCCCCCCEEECcCCE-eeeECC-hhHhcCCCCCEEECcCCcccCccC----------hhhccC
Confidence            877643222221   23467788888888753 443323 345677888888888765332222          233457


Q ss_pred             cccceEecCCCCCccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCc
Q 003639          588 GQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLP  667 (806)
Q Consensus       588 ~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~  667 (806)
                      ++|+.|++++|.....+|.......+..  ..+....+         ..........+++|+.|++++|.+....+..  
T Consensus       452 ~~L~~L~L~~n~~~~~~p~~~~~~~L~~--L~ls~n~l---------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--  518 (968)
T PLN00113        452 PSLQMLSLARNKFFGGLPDSFGSKRLEN--LDLSRNQF---------SGAVPRKLGSLSELMQLKLSENKLSGEIPDE--  518 (968)
T ss_pred             CCCcEEECcCceeeeecCcccccccceE--EECcCCcc---------CCccChhhhhhhccCEEECcCCcceeeCChH--
Confidence            7788888887765544443211100000  00000000         0001113446889999999999877544432  


Q ss_pred             ccccccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccccccccccccccccc
Q 003639          668 VAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPEL  747 (806)
Q Consensus       668 ~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L  747 (806)
                         +..+++|++|+|++| +++...| ..+..+++|++|++++|.-...+  |....       .+++|+.|++++|+-.
T Consensus       519 ---~~~l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~-------~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        519 ---LSSCKKLVSLDLSHN-QLSGQIP-ASFSEMPVLSQLDLSQNQLSGEI--PKNLG-------NVESLVQVNISHNHLH  584 (968)
T ss_pred             ---HcCccCCCEEECCCC-cccccCC-hhHhCcccCCEEECCCCcccccC--ChhHh-------cCcccCEEeccCCcce
Confidence               568899999999885 6665533 56788999999999998543334  33322       5889999999999877


Q ss_pred             cccCCCCCcCCCCCcCEEeEecCCCc
Q 003639          748 KCLYPGMHTSEWPALKLLDVSACDQV  773 (806)
Q Consensus       748 ~~l~~~~~~~~l~sL~~L~i~~C~~L  773 (806)
                      ..+|...   .+.++....+.+.+.+
T Consensus       585 ~~~p~~~---~~~~~~~~~~~~n~~l  607 (968)
T PLN00113        585 GSLPSTG---AFLAINASAVAGNIDL  607 (968)
T ss_pred             eeCCCcc---hhcccChhhhcCCccc
Confidence            7788652   3445555566666655

>PLN03210 Resistant to P

Probab=99.91  E-value=1.2e-23  Score=255.37  Aligned_cols=373  Identities=20%  Similarity=0.247  Sum_probs=253.7

Q ss_pred             CChhhhcCCCceEEEeecCCCc-------cCCccccccc-CCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccCh
Q 003639          248 PCNFFTGMRKLRVVDFTRMQLL-------LLPSSIDLLV-NLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPE  318 (806)
Q Consensus       248 ~~~~~~~l~~Lr~L~L~~~~i~-------~lp~~l~~l~-~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~  318 (806)
                      ....|.++++|++|.+..+...       .+|..+..++ +||+|.+.++.++. |..+ .+.+|++|++.++.+..+|.
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~  628 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD  628 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc
Confidence            4556799999999999765321       3777777765 59999999999888 7666 67999999999999999999


Q ss_pred             hccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecC-CC
Q 003639          319 ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKN-DN  397 (806)
Q Consensus       319 ~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~-~~  397 (806)
                      ++..+++|+.|++++|..++.+|.  ++.+++|++|++++|...           ...+..++++++|+.|+++++. ..
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-----------~~lp~si~~L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-----------VELPSSIQYLNKLEDLDMSRCENLE  695 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------cccchhhhccCCCCEEeCCCCCCcC
Confidence            999999999999999888888885  889999999999888544           1233455666666666665432 22


Q ss_pred             cCCccccccccceEEEeeeecCccccceEEEeecCcccccccccccccceeeeeccccCCcchhcccccccccCCCcEEE
Q 003639          398 VLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLH  477 (806)
Q Consensus       398 ~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~  477 (806)
                      .+|..                                      + .+++|+.|++++|..++..+.     ..++|++|+
T Consensus       696 ~Lp~~--------------------------------------i-~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~  731 (1153)
T PLN03210        696 ILPTG--------------------------------------I-NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLD  731 (1153)
T ss_pred             ccCCc--------------------------------------C-CCCCCCEEeCCCCCCcccccc-----ccCCcCeee
Confidence            22211                                      1 244555566655544433321     123555555


Q ss_pred             eccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccccccccCCCCCccEEEEecCCCCCcccchhhhcccCccc
Q 003639          478 VQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLE  557 (806)
Q Consensus       478 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~  557 (806)
                      +.++. ++.++       ....+++|++|.+.++.... ++                    ..+..+++ .....+++|+
T Consensus       732 L~~n~-i~~lP-------~~~~l~~L~~L~l~~~~~~~-l~--------------------~~~~~l~~-~~~~~~~sL~  781 (1153)
T PLN03210        732 LDETA-IEEFP-------SNLRLENLDELILCEMKSEK-LW--------------------ERVQPLTP-LMTMLSPSLT  781 (1153)
T ss_pred             cCCCc-ccccc-------ccccccccccccccccchhh-cc--------------------ccccccch-hhhhccccch
Confidence            55442 22221       11123344444333322110 00                    01111111 1123467899


Q ss_pred             EEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccccCCcccccccCccccccccccccccccccccc
Q 003639          558 RIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSA  637 (806)
Q Consensus       558 ~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (806)
                      .|++++|+.+..++          ..+..+++|+.|+|++|++++.+|..                              
T Consensus       782 ~L~Ls~n~~l~~lP----------~si~~L~~L~~L~Ls~C~~L~~LP~~------------------------------  821 (1153)
T PLN03210        782 RLFLSDIPSLVELP----------SSIQNLHKLEHLEIENCINLETLPTG------------------------------  821 (1153)
T ss_pred             heeCCCCCCccccC----------hhhhCCCCCCEEECCCCCCcCeeCCC------------------------------
Confidence            99999999888776          45678999999999999999887752                              


Q ss_pred             ccccccccCCcceeeecce-eeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccce
Q 003639          638 LFNEKVALSNLEVLEMNKV-NIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQE  716 (806)
Q Consensus       638 ~~~~~~~~~~L~~L~l~~c-~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~  716 (806)
                           ..+++|+.|++++| .+..++.         ..++|+.|++++ +.++.+|  ..+..+++|+.|++++|++++.
T Consensus       822 -----~~L~sL~~L~Ls~c~~L~~~p~---------~~~nL~~L~Ls~-n~i~~iP--~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        822 -----INLESLESLDLSGCSRLRTFPD---------ISTNISDLNLSR-TGIEEVP--WWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             -----CCccccCEEECCCCCccccccc---------cccccCEeECCC-CCCccCh--HHHhcCCCCCEEECCCCCCcCc
Confidence                 15789999999999 7766543         237899999988 7898885  5678899999999999999998


Q ss_pred             eeccccccCCCCCcccccccccccccccccccccCCCC-C----------cCCCCCcCEEeEecCCCce
Q 003639          717 IISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGM-H----------TSEWPALKLLDVSACDQVT  774 (806)
Q Consensus       717 i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~-~----------~~~l~sL~~L~i~~C~~L~  774 (806)
                      +...  ..       .+++|+.|++++|++|+.++... +          ...+|+...+.+.+|.++.
T Consensus       885 l~~~--~~-------~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        885 VSLN--IS-------KLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             cCcc--cc-------cccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            7432  11       58899999999999998664320 0          1234455666777887764

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=5.5e-24  Score=218.37  Aligned_cols=177  Identities=15%  Similarity=0.217  Sum_probs=125.6

Q ss_pred             ccccccEEEEEeCCCCCCCCC--C--CCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCccccccc
Q 003639          204 IALKECYAISLRGCSIHELPE--G--LECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLV  279 (806)
Q Consensus       204 ~~~~~lr~l~l~~~~~~~l~~--~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~  279 (806)
                      ..+.+.+.++.+.+.++.+..  .  .-.+..++|++++| .+..+  ...+|.++.+|+.+++..|.++.+|...+..-
T Consensus        49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~i--d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg  125 (873)
T KOG4194|consen   49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHI--DFEFFYNLPNLQEVNLNKNELTRIPRFGHESG  125 (873)
T ss_pred             cCCCCceeeecCccccccccccccCCcCccceeeeecccc-ccccC--cHHHHhcCCcceeeeeccchhhhccccccccc
Confidence            345567888888887766532  1  12456777888877 34445  44566888888888888888888887777777


Q ss_pred             CCcEEEecCcCCCC--chhhcCCCccceEeccCCCCcccCh-hccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEe
Q 003639          280 NLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYM  356 (806)
Q Consensus       280 ~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l  356 (806)
                      ||+.|+|.+|.|++  -+.+..+..||.|||+.|.|+.+|. ++..=.++++|++++|. ++.+..+.|..+.+|-.|.+
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeec
Confidence            78888888888877  5677888888888888888887765 35555778888888776 77776666777777777777


Q ss_pred             ecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecC
Q 003639          357 SNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKN  395 (806)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~  395 (806)
                      +.|.++           .-....++++++|+.|++..|.
T Consensus       205 srNrit-----------tLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  205 SRNRIT-----------TLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             ccCccc-----------ccCHHHhhhcchhhhhhccccc
Confidence            777665           1223445556666666665444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=9e-27  Score=228.51  Aligned_cols=456  Identities=19%  Similarity=0.227  Sum_probs=281.3

Q ss_pred             cccEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEE
Q 003639          207 KECYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC  285 (806)
Q Consensus       207 ~~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~  285 (806)
                      .-+..+.+++|+..++|+ ..++..+..|+++.|. ...+  |..+ ..+..|+.|+.++|.+..+|++++.+-.|..|+
T Consensus        68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~l--p~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSEL--PEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLD  143 (565)
T ss_pred             cceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-Hhhc--cHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence            346677777777766665 3456677777777763 4555  6665 677777778888887777777777777788887


Q ss_pred             ecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCccccc
Q 003639          286 LVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWD  364 (806)
Q Consensus       286 L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~  364 (806)
                      ..+|++.. |++++.+.+|..|++.+|+++.+|+..-+++.|++|+...|- ++.+|++ +|.+.+|+.|++..|.+.  
T Consensus       144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~--  219 (565)
T KOG0472|consen  144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIR--  219 (565)
T ss_pred             ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhcccc--
Confidence            77777777 777777777888888887777777776667788888777655 7777777 788888888877777665  


Q ss_pred             CCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccccc
Q 003639          365 DEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGI  444 (806)
Q Consensus       365 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l  444 (806)
                                 .+.+++.++.|++|.+..|.+..+|... +++|             ..+..++++.+.....|+.+..+
T Consensus       220 -----------~lPef~gcs~L~Elh~g~N~i~~lpae~-~~~L-------------~~l~vLDLRdNklke~Pde~clL  274 (565)
T KOG0472|consen  220 -----------FLPEFPGCSLLKELHVGENQIEMLPAEH-LKHL-------------NSLLVLDLRDNKLKEVPDEICLL  274 (565)
T ss_pred             -----------cCCCCCccHHHHHHHhcccHHHhhHHHH-hccc-------------ccceeeeccccccccCchHHHHh
Confidence                       3335666666666666666665555543 2222             45556666666666667777777


Q ss_pred             cceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecc-ccccccc-------
Q 003639          445 KDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLY-NLIKLER-------  516 (806)
Q Consensus       445 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~l~~-------  516 (806)
                      ++|++|+++++ .+...+..+  +.+ .|+.|.+.|++-- .+-..   ....+.-.-|++|.-. .+..+..       
T Consensus       275 rsL~rLDlSNN-~is~Lp~sL--gnl-hL~~L~leGNPlr-TiRr~---ii~~gT~~vLKyLrs~~~~dglS~se~~~e~  346 (565)
T KOG0472|consen  275 RSLERLDLSNN-DISSLPYSL--GNL-HLKFLALEGNPLR-TIRRE---IISKGTQEVLKYLRSKIKDDGLSQSEGGTET  346 (565)
T ss_pred             hhhhhhcccCC-ccccCCccc--ccc-eeeehhhcCCchH-HHHHH---HHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence            77777777764 444444444  445 6666777666421 11000   0000000011111110 0000000       


Q ss_pred             ----ccccccccCCCCCccEEEEecCCCCCcccchhhhccc--CcccEEEeeccccccchhcccCccccccccccccccc
Q 003639          517 ----ICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCL--PRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQL  590 (806)
Q Consensus       517 ----~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l--~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L  590 (806)
                          ..........+.+.+.|+++. .+++.+|.. .+..-  .-...++++... +.++|          ..+..+..+
T Consensus       347 ~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdE-Vfea~~~~~Vt~VnfskNq-L~elP----------k~L~~lkel  413 (565)
T KOG0472|consen  347 AMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDE-VFEAAKSEIVTSVNFSKNQ-LCELP----------KRLVELKEL  413 (565)
T ss_pred             cCCCCCCcccchhhhhhhhhhcccc-cccccCCHH-HHHHhhhcceEEEecccch-Hhhhh----------hhhHHHHHH
Confidence                000111123455678888887 778877653 22221  123445555532 44444          233333333


Q ss_pred             ceEecCCCCCccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccc
Q 003639          591 RTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAM  670 (806)
Q Consensus       591 ~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~  670 (806)
                      .+.-+....++..++.                                  .+..+++|..|++++|-+-++|.+.     
T Consensus       414 vT~l~lsnn~isfv~~----------------------------------~l~~l~kLt~L~L~NN~Ln~LP~e~-----  454 (565)
T KOG0472|consen  414 VTDLVLSNNKISFVPL----------------------------------ELSQLQKLTFLDLSNNLLNDLPEEM-----  454 (565)
T ss_pred             HHHHHhhcCccccchH----------------------------------HHHhhhcceeeecccchhhhcchhh-----
Confidence            3332333333332221                                  3446788888999988776766543     


Q ss_pred             cccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCccccccccccccccccccccc
Q 003639          671 FLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCL  750 (806)
Q Consensus       671 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  750 (806)
                       +.+..|++|+|+. ++.+.+|  .....+.-||.+-+++ +++.++.. .++.       ....|..|++.+ +.+..+
T Consensus       455 -~~lv~Lq~LnlS~-NrFr~lP--~~~y~lq~lEtllas~-nqi~~vd~-~~l~-------nm~nL~tLDL~n-Ndlq~I  520 (565)
T KOG0472|consen  455 -GSLVRLQTLNLSF-NRFRMLP--ECLYELQTLETLLASN-NQIGSVDP-SGLK-------NMRNLTTLDLQN-NDLQQI  520 (565)
T ss_pred             -hhhhhhheecccc-cccccch--HHHhhHHHHHHHHhcc-ccccccCh-HHhh-------hhhhcceeccCC-CchhhC
Confidence             4567799999977 6787775  5666667777777776 57777632 2333       578888999977 688899


Q ss_pred             CCCCCcCCCCCcCEEeEecCC
Q 003639          751 YPGMHTSEWPALKLLDVSACD  771 (806)
Q Consensus       751 ~~~~~~~~l~sL~~L~i~~C~  771 (806)
                      |++  ++++++|++|++.|.|
T Consensus       521 Pp~--LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  521 PPI--LGNMTNLRHLELDGNP  539 (565)
T ss_pred             Chh--hccccceeEEEecCCc
Confidence            988  6788999999998887

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.9e-23  Score=214.41  Aligned_cols=365  Identities=17%  Similarity=0.215  Sum_probs=205.7

Q ss_pred             CcEEEecCcCCCC--chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeec
Q 003639          281 LQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN  358 (806)
Q Consensus       281 L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~  358 (806)
                      -++|++++|.+..  +..|.++++|+.+++..|.++.+|...+...+|+.|++.+|. +.++..+.+.-++.||.|+++.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhh
Confidence            3457777777666  566777777777777777777777666666667777777755 6666655577777777777777


Q ss_pred             CcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccc
Q 003639          359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICS  438 (806)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~  438 (806)
                      |.+.           ......+.+-.++++|++++|.++++..+.+                                  
T Consensus       159 N~is-----------~i~~~sfp~~~ni~~L~La~N~It~l~~~~F----------------------------------  193 (873)
T KOG4194|consen  159 NLIS-----------EIPKPSFPAKVNIKKLNLASNRITTLETGHF----------------------------------  193 (873)
T ss_pred             chhh-----------cccCCCCCCCCCceEEeeccccccccccccc----------------------------------
Confidence            6655           1222344444567777777666665544321                                  


Q ss_pred             cccccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccccccccc
Q 003639          439 KKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERIC  518 (806)
Q Consensus       439 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  518 (806)
                         ..+.+|..|.|+++...+-....+  ..+|+|+.|++..+. ++.+    . +....++++|+.|.+... ++..+.
T Consensus       194 ---~~lnsL~tlkLsrNrittLp~r~F--k~L~~L~~LdLnrN~-iriv----e-~ltFqgL~Sl~nlklqrN-~I~kL~  261 (873)
T KOG4194|consen  194 ---DSLNSLLTLKLSRNRITTLPQRSF--KRLPKLESLDLNRNR-IRIV----E-GLTFQGLPSLQNLKLQRN-DISKLD  261 (873)
T ss_pred             ---cccchheeeecccCcccccCHHHh--hhcchhhhhhccccc-eeee----h-hhhhcCchhhhhhhhhhc-Cccccc
Confidence               112233333333321111111111  234444444443331 1111    0 001122333333333221 111111


Q ss_pred             ccccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCC
Q 003639          519 QDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSL  598 (806)
Q Consensus       519 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c  598 (806)
                      .+.  +..+.++++|+++. +++..+-.                                   +.+.++++|+.|++++.
T Consensus       262 DG~--Fy~l~kme~l~L~~-N~l~~vn~-----------------------------------g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  262 DGA--FYGLEKMEHLNLET-NRLQAVNE-----------------------------------GWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             Ccc--eeeecccceeeccc-chhhhhhc-----------------------------------ccccccchhhhhccchh
Confidence            111  22344555555554 44443321                                   23345555555555554


Q ss_pred             CCccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCcc
Q 003639          599 PELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLT  678 (806)
Q Consensus       599 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~  678 (806)
                      . +..+.                                 .+.....++|++|++++|.++.+.++.     |..+..|+
T Consensus       304 a-I~rih---------------------------------~d~WsftqkL~~LdLs~N~i~~l~~~s-----f~~L~~Le  344 (873)
T KOG4194|consen  304 A-IQRIH---------------------------------IDSWSFTQKLKELDLSSNRITRLDEGS-----FRVLSQLE  344 (873)
T ss_pred             h-hheee---------------------------------cchhhhcccceeEeccccccccCChhH-----HHHHHHhh
Confidence            2 11111                                 113446788889999988888876654     66888899


Q ss_pred             EEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccccccccccccccccccccCCCCCcCC
Q 003639          679 RLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSE  758 (806)
Q Consensus       679 ~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~  758 (806)
                      +|+++. +.++.+ ....+..+.+|++|++++ +.+...+. + ..+.+.   .+++|++|.+.+ ++|++++... ..+
T Consensus       345 ~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~-N~ls~~IE-D-aa~~f~---gl~~LrkL~l~g-Nqlk~I~krA-fsg  414 (873)
T KOG4194|consen  345 ELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRS-NELSWCIE-D-AAVAFN---GLPSLRKLRLTG-NQLKSIPKRA-FSG  414 (873)
T ss_pred             hhcccc-cchHHH-HhhHHHHhhhhhhhcCcC-CeEEEEEe-c-chhhhc---cchhhhheeecC-ceeeecchhh-hcc
Confidence            999988 788887 567778888999999888 45654432 1 111111   388899999988 7899998774 357


Q ss_pred             CCCcCEEeEecCCCceeecccchhhcccccccCC
Q 003639          759 WPALKLLDVSACDQVTVFDSELFSFFKSSEEDKP  792 (806)
Q Consensus       759 l~sL~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~  792 (806)
                      +++|++|++.+.+ +.++-.+-+..+ +|+++..
T Consensus       415 l~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  415 LEALEHLDLGDNA-IASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             CcccceecCCCCc-ceeecccccccc-hhhhhhh
Confidence            8899999995555 666544433444 6666665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.88  E-value=5.6e-25  Score=237.81  Aligned_cols=468  Identities=21%  Similarity=0.233  Sum_probs=251.4

Q ss_pred             EEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcC
Q 003639          212 ISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECM  290 (806)
Q Consensus       212 l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~  290 (806)
                      ++++.+..+.+|. ...-..+..|.+..|.. ...  |-.+..+.-+|+.|++++|.+..+|..+..+.+|+.|+++.|.
T Consensus         3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~-l~~--pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    3 VDASDEQLELIPEQILNNEALQILNLRRNSL-LSR--PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             cccccccCcccchhhccHHHHHhhhcccccc-ccC--chHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh
Confidence            4455566666665 22333477777777642 223  6666677777999999999999999999999999999999999


Q ss_pred             CCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCC
Q 003639          291 LDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPN  369 (806)
Q Consensus       291 l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~  369 (806)
                      +.. |.+++++++|++|+|.+|.+..+|.++..+++|++|++++|. +..+|.- +..++.+..+..++| ..       
T Consensus        80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~-------  149 (1081)
T KOG0618|consen   80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EK-------  149 (1081)
T ss_pred             HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hh-------
Confidence            988 999999999999999999999999999999999999999976 7888875 888999998888877 21       


Q ss_pred             chhhhccccccCCCCCCcEEEEEecCC-CcCCccccccccceEEEeeeecCccccceEEEeecCccccccccccccccee
Q 003639          370 SERINARLDELMHLPRLATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVE  448 (806)
Q Consensus       370 ~~~~~~~~~~L~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~L~  448 (806)
                             +..++... ++.+++..+.. ..++.++  .+++.               .++++-+...  ...+..+++|+
T Consensus       150 -------~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~---------------~ldLr~N~~~--~~dls~~~~l~  202 (1081)
T KOG0618|consen  150 -------IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTH---------------QLDLRYNEME--VLDLSNLANLE  202 (1081)
T ss_pred             -------hhhhcccc-chhhhhhhhhcccchhcch--hhhhe---------------eeecccchhh--hhhhhhccchh
Confidence                   12222222 44455544332 1222221  11111               1222111111  11112233333


Q ss_pred             eeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccccccccCCCC
Q 003639          449 YLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFN  528 (806)
Q Consensus       449 ~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  528 (806)
                      .+....+. +..+.     ..-++|+.|+...|+-.+..        ....-.+|+.++++.. ++..++..   ...++
T Consensus       203 ~l~c~rn~-ls~l~-----~~g~~l~~L~a~~n~l~~~~--------~~p~p~nl~~~dis~n-~l~~lp~w---i~~~~  264 (1081)
T KOG0618|consen  203 VLHCERNQ-LSELE-----ISGPSLTALYADHNPLTTLD--------VHPVPLNLQYLDISHN-NLSNLPEW---IGACA  264 (1081)
T ss_pred             hhhhhhcc-cceEE-----ecCcchheeeeccCcceeec--------cccccccceeeecchh-hhhcchHH---HHhcc
Confidence            33332211 11110     12345555555555432111        1112234555555442 23333211   33455


Q ss_pred             CccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccccCC
Q 003639          529 ELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGV  608 (806)
Q Consensus       529 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~  608 (806)
                      +|+.+.+.+ +.++.++.  -+....+|+.|.+..|. ++.++          .....+.+|++|++... ++.++|...
T Consensus       265 nle~l~~n~-N~l~~lp~--ri~~~~~L~~l~~~~ne-l~yip----------~~le~~~sL~tLdL~~N-~L~~lp~~~  329 (1081)
T KOG0618|consen  265 NLEALNANH-NRLVALPL--RISRITSLVSLSAAYNE-LEYIP----------PFLEGLKSLRTLDLQSN-NLPSLPDNF  329 (1081)
T ss_pred             cceEecccc-hhHHhhHH--HHhhhhhHHHHHhhhhh-hhhCC----------Ccccccceeeeeeehhc-cccccchHH
Confidence            555555555 44444432  22233444444444433 33333          34455677777777665 455554421


Q ss_pred             cccccc-cCcccccccc----cccccc-----------cccccccccccccccCCcceeeecceeeeecCCCCCcccccc
Q 003639          609 KKNRQA-QGMHETCSNE----ISSLED-----------KLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFL  672 (806)
Q Consensus       609 ~~~~~~-~~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~  672 (806)
                      ...... ....+.....    .+.++.           .-.-....++.+..+++|+.|++++|.+..++...     +.
T Consensus       330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~-----~~  404 (1081)
T KOG0618|consen  330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK-----LR  404 (1081)
T ss_pred             HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH-----Hh
Confidence            111000 0000000000    000000           00001113334445556666666666555554433     33


Q ss_pred             cCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccccccccccccccccccccCC
Q 003639          673 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYP  752 (806)
Q Consensus       673 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~  752 (806)
                      ++..|+.|++++ ++|+.+|  ..+..+..|++|...+ +.|..+          |+...++.|+.++++ |++|+.+-.
T Consensus       405 kle~LeeL~LSG-NkL~~Lp--~tva~~~~L~tL~ahs-N~l~~f----------Pe~~~l~qL~~lDlS-~N~L~~~~l  469 (1081)
T KOG0618|consen  405 KLEELEELNLSG-NKLTTLP--DTVANLGRLHTLRAHS-NQLLSF----------PELAQLPQLKVLDLS-CNNLSEVTL  469 (1081)
T ss_pred             chHHhHHHhccc-chhhhhh--HHHHhhhhhHHHhhcC-Cceeec----------hhhhhcCcceEEecc-cchhhhhhh
Confidence            555556666655 5565553  3344555555555554 344433          333358888888885 577765533


Q ss_pred             CCCcCCCCCcCEEeEecCCCc
Q 003639          753 GMHTSEWPALKLLDVSACDQV  773 (806)
Q Consensus       753 ~~~~~~l~sL~~L~i~~C~~L  773 (806)
                      ... .-.|.|++|+++|.+.+
T Consensus       470 ~~~-~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  470 PEA-LPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhh-CCCcccceeeccCCccc
Confidence            211 11268888888887764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.88  E-value=1.2e-25  Score=220.75  Aligned_cols=480  Identities=21%  Similarity=0.206  Sum_probs=320.9

Q ss_pred             ccEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEe
Q 003639          208 ECYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCL  286 (806)
Q Consensus       208 ~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L  286 (806)
                      .+..+.+++|.++.+.+ ..++..+.+|.+..|. ....  |.++ +.+..+..|+.++|++..+|+.++.+..|+.|+.
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~l--p~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQL--PAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccch-hhhC--CHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence            46778888888876654 5678899999999885 4445  7666 8999999999999999999999999999999999


Q ss_pred             cCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccC
Q 003639          287 VECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD  365 (806)
Q Consensus       287 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~  365 (806)
                      +++.+.+ +++|+.+..|..|+..+|++..+|.+++++.+|..|++.++. ++.+|+..+ +++.|++|+...|...   
T Consensus       122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~---  196 (565)
T KOG0472|consen  122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLE---  196 (565)
T ss_pred             cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhh---
Confidence            9999999 999999999999999999999999999999999999999976 899998844 4999999998766554   


Q ss_pred             CCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccc-cc
Q 003639          366 EGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQ-GI  444 (806)
Q Consensus       366 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~-~l  444 (806)
                               ..+.+++.+.+|..|++..|.+..+|..-.+                ..++.+++..+.....|.... .+
T Consensus       197 ---------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gc----------------s~L~Elh~g~N~i~~lpae~~~~L  251 (565)
T KOG0472|consen  197 ---------TLPPELGGLESLELLYLRRNKIRFLPEFPGC----------------SLLKELHVGENQIEMLPAEHLKHL  251 (565)
T ss_pred             ---------cCChhhcchhhhHHHHhhhcccccCCCCCcc----------------HHHHHHHhcccHHHhhHHHHhccc
Confidence                     6778999999999999999998888743212                334444444444334444443 78


Q ss_pred             cceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccccccccccccccc
Q 003639          445 KDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSV  524 (806)
Q Consensus       445 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  524 (806)
                      +++..|+++++ .+++.+..+  .-+.+|.+|+++++. +..+      .+..+.+ .|+.|.+.+.+ ++.+.......
T Consensus       252 ~~l~vLDLRdN-klke~Pde~--clLrsL~rLDlSNN~-is~L------p~sLgnl-hL~~L~leGNP-lrTiRr~ii~~  319 (565)
T KOG0472|consen  252 NSLLVLDLRDN-KLKEVPDEI--CLLRSLERLDLSNND-ISSL------PYSLGNL-HLKFLALEGNP-LRTIRREIISK  319 (565)
T ss_pred             ccceeeecccc-ccccCchHH--HHhhhhhhhcccCCc-cccC------Ccccccc-eeeehhhcCCc-hHHHHHHHHcc
Confidence            88999999884 566666654  447789999998873 3332      2245555 77788777754 33332211111


Q ss_pred             CCCCCccEEEE-ecCCCCCcc----------c--chhhhcccCcccEEEeeccccccchhcccCcccccccccccccccc
Q 003639          525 QSFNELKTIRV-EHCDQLSNI----------F--LLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLR  591 (806)
Q Consensus       525 ~~~~~L~~L~l-~~c~~l~~l----------~--~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~  591 (806)
                      +.-.-|++|.= .-|.++..-          +  +.......-+.+.|++++ ..++.+|......       ..-.-..
T Consensus       320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea-------~~~~~Vt  391 (565)
T KOG0472|consen  320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEA-------AKSEIVT  391 (565)
T ss_pred             cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHH-------hhhcceE
Confidence            11111222210 011122110          0  011223455677777776 3455555311100       0001123


Q ss_pred             eEecCCCCCccccccCCcccccccCcccccccccccccccccccccccccccccCCcc-eeeecceeeeecCCCCCcccc
Q 003639          592 TLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLE-VLEMNKVNIEKIWPNQLPVAM  670 (806)
Q Consensus       592 ~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~l~~i~~~~~~~~~  670 (806)
                      ..+++.. ++..+|..                                  ...+..+. .+.++++.+.- .+.     .
T Consensus       392 ~VnfskN-qL~elPk~----------------------------------L~~lkelvT~l~lsnn~isf-v~~-----~  430 (565)
T KOG0472|consen  392 SVNFSKN-QLCELPKR----------------------------------LVELKELVTDLVLSNNKISF-VPL-----E  430 (565)
T ss_pred             EEecccc-hHhhhhhh----------------------------------hHHHHHHHHHHHhhcCcccc-chH-----H
Confidence            3444443 23333321                                  11222232 23344443332 222     2


Q ss_pred             cccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCccccccccccccccccccccc
Q 003639          671 FLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCL  750 (806)
Q Consensus       671 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  750 (806)
                      +..+++|..|++++ +-|.++|  ..+..+..|+.|+|+.. .+..+  |+...       .+..|+.+..++ .++..+
T Consensus       431 l~~l~kLt~L~L~N-N~Ln~LP--~e~~~lv~Lq~LnlS~N-rFr~l--P~~~y-------~lq~lEtllas~-nqi~~v  496 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSN-NLLNDLP--EEMGSLVRLQTLNLSFN-RFRML--PECLY-------ELQTLETLLASN-NQIGSV  496 (565)
T ss_pred             HHhhhcceeeeccc-chhhhcc--hhhhhhhhhheeccccc-ccccc--hHHHh-------hHHHHHHHHhcc-cccccc
Confidence            45789999999988 7888886  45577888999999994 66655  33211       244455555554 688888


Q ss_pred             CCCCCcCCCCCcCEEeEecCCCceeecccchhhcccccccCCCC-CCCCC
Q 003639          751 YPGMHTSEWPALKLLDVSACDQVTVFDSELFSFFKSSEEDKPDI-PARQP  799 (806)
Q Consensus       751 ~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~-~~~~~  799 (806)
                      +... +.++..|..|++ +.+.+..+|..+ +++++|+++.+++ +-++|
T Consensus       497 d~~~-l~nm~nL~tLDL-~nNdlq~IPp~L-gnmtnL~hLeL~gNpfr~P  543 (565)
T KOG0472|consen  497 DPSG-LKNMRNLTTLDL-QNNDLQQIPPIL-GNMTNLRHLELDGNPFRQP  543 (565)
T ss_pred             ChHH-hhhhhhcceecc-CCCchhhCChhh-ccccceeEEEecCCccCCC
Confidence            8762 457789999999 666799999977 8999999998875 44454

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=7.8e-25  Score=225.79  Aligned_cols=176  Identities=21%  Similarity=0.285  Sum_probs=132.9

Q ss_pred             cccccEEEEEeCCCC--CCCCCCC-CCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCC
Q 003639          205 ALKECYAISLRGCSI--HELPEGL-ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNL  281 (806)
Q Consensus       205 ~~~~lr~l~l~~~~~--~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L  281 (806)
                      +++-+|.+++++|.+  ..+|... .++.++-|.+... ....+  |..+ +.+.+|.+|++.+|++..+...++.|+.|
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~v--PeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~L   80 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQV--PEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRL   80 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhC--hHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence            455677788888776  3566533 4677777777665 35556  7666 78888888888888888877778888888


Q ss_pred             cEEEecCcCCCC---chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeec
Q 003639          282 QTLCLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN  358 (806)
Q Consensus       282 ~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~  358 (806)
                      |.+.++.|+++.   |..|.+|..|.+|||++|.+++.|.++.+-+++-.|++++|. +.++|...+.+|+.|-.|++++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence            888888888765   778888888888888888888888888888888888888865 8888887778888888888887


Q ss_pred             CcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639          359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN  397 (806)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  397 (806)
                      |.+.            ..+..++.+.+|++|.+++|...
T Consensus       160 NrLe------------~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  160 NRLE------------MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             chhh------------hcCHHHHHHhhhhhhhcCCChhh
Confidence            7664            45566777778888887766543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.86  E-value=3.6e-24  Score=231.64  Aligned_cols=433  Identities=20%  Similarity=0.198  Sum_probs=243.8

Q ss_pred             cEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEec
Q 003639          209 CYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV  287 (806)
Q Consensus       209 lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~  287 (806)
                      +++|++++|.+..+|. ....++|+.|.++.| .+..+  |.+. .++++|++|.|.+|....+|.++..+++|++|+++
T Consensus        47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~v--p~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSV--PSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eEEeeccccccccCCchhhhHHHHhhcccchh-hHhhC--chhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence            4555555555544443 233445555555544 23333  4332 44555555555555555555555555555555555


Q ss_pred             CcCCCC-chhhcCCCccceEeccCC-CCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccC
Q 003639          288 ECMLDD-IAIIGKLKNLEILSFWGS-GIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD  365 (806)
Q Consensus       288 ~~~l~~-~~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~  365 (806)
                      +|.+.. |..+..+..+..++.++| .+..++..    . .+++++..+.....++.+ +..++.  .|++..|.+.   
T Consensus       123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---  191 (1081)
T KOG0618|consen  123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT----S-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---  191 (1081)
T ss_pred             hhccCCCchhHHhhhHHHHHhhhcchhhhhhccc----c-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---
Confidence            555444 555555555555555554 22222221    1 444444444433344443 444444  4666555432   


Q ss_pred             CCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeee------ecCccccceEEEeecCccccccc
Q 003639          366 EGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALF------AIDDHETMRTLKLKLNSVSICSK  439 (806)
Q Consensus       366 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~------~~~~~~~l~~l~l~~~~~~~~~~  439 (806)
                                 ...+..+.+|+.+....+....+...  -.+++.|..+.+      ....+.+++.++++.+.....|.
T Consensus       192 -----------~~dls~~~~l~~l~c~rn~ls~l~~~--g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~  258 (1081)
T KOG0618|consen  192 -----------VLDLSNLANLEVLHCERNQLSELEIS--GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPE  258 (1081)
T ss_pred             -----------hhhhhhccchhhhhhhhcccceEEec--CcchheeeeccCcceeeccccccccceeeecchhhhhcchH
Confidence                       23444555555554444443322111  223333332211      11223567777777777777778


Q ss_pred             ccccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccc
Q 003639          440 KLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ  519 (806)
Q Consensus       440 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  519 (806)
                      |+..+.+|+.+...++.. ..++..+  ....+|+.|.+..| .+++++.      ....+.+|++|++... ++...+.
T Consensus       259 wi~~~~nle~l~~n~N~l-~~lp~ri--~~~~~L~~l~~~~n-el~yip~------~le~~~sL~tLdL~~N-~L~~lp~  327 (1081)
T KOG0618|consen  259 WIGACANLEALNANHNRL-VALPLRI--SRITSLVSLSAAYN-ELEYIPP------FLEGLKSLRTLDLQSN-NLPSLPD  327 (1081)
T ss_pred             HHHhcccceEecccchhH-HhhHHHH--hhhhhHHHHHhhhh-hhhhCCC------cccccceeeeeeehhc-cccccch
Confidence            888888888888776544 2332222  23556777777666 3444421      3445677777777663 3444433


Q ss_pred             cccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCC
Q 003639          520 DRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLP  599 (806)
Q Consensus       520 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~  599 (806)
                      ..+. ..-..|+.|..+. +++...+. ..-..++.|+.|.+.+..--...+          .-+.+++.||.|++++. 
T Consensus       328 ~~l~-v~~~~l~~ln~s~-n~l~~lp~-~~e~~~~~Lq~LylanN~Ltd~c~----------p~l~~~~hLKVLhLsyN-  393 (1081)
T KOG0618|consen  328 NFLA-VLNASLNTLNVSS-NKLSTLPS-YEENNHAALQELYLANNHLTDSCF----------PVLVNFKHLKVLHLSYN-  393 (1081)
T ss_pred             HHHh-hhhHHHHHHhhhh-cccccccc-ccchhhHHHHHHHHhcCcccccch----------hhhccccceeeeeeccc-
Confidence            2111 0011244444443 55555542 233456677777776654322222          24668899999999997 


Q ss_pred             CccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCccE
Q 003639          600 ELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTR  679 (806)
Q Consensus       600 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~  679 (806)
                      .|.++|..                                 ....+..|++|++++|+++.++..      ...+..|++
T Consensus       394 rL~~fpas---------------------------------~~~kle~LeeL~LSGNkL~~Lp~t------va~~~~L~t  434 (1081)
T KOG0618|consen  394 RLNSFPAS---------------------------------KLRKLEELEELNLSGNKLTTLPDT------VANLGRLHT  434 (1081)
T ss_pred             ccccCCHH---------------------------------HHhchHHhHHHhcccchhhhhhHH------HHhhhhhHH
Confidence            46665542                                 344788999999999999998753      357899999


Q ss_pred             EEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccc-cccccccccccccc
Q 003639          680 LILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVF-LQVTTLILLGLPEL  747 (806)
Q Consensus       680 L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L  747 (806)
                      |...+ ++|...|   .+..++.|+.+|++. ++|..+..++.         .+ |.|+.|++++...+
T Consensus       435 L~ahs-N~l~~fP---e~~~l~qL~~lDlS~-N~L~~~~l~~~---------~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  435 LRAHS-NQLLSFP---ELAQLPQLKVLDLSC-NNLSEVTLPEA---------LPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             HhhcC-Cceeech---hhhhcCcceEEeccc-chhhhhhhhhh---------CCCcccceeeccCCccc
Confidence            99977 7888884   467899999999976 78988765553         34 89999999987653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=6.6e-24  Score=219.00  Aligned_cols=369  Identities=19%  Similarity=0.230  Sum_probs=224.5

Q ss_pred             CCCccEEEecCCCCc-ccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhcCCCccce
Q 003639          228 CPRLEFLHINPKDSL-FDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEI  305 (806)
Q Consensus       228 ~~~Lr~L~l~~~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~  305 (806)
                      ++-.|-.++++|... ..+  |.+. ..+..++.|.|..+.+..+|+.++.|.+|++|.+.+|++.. -..++.|+.||.
T Consensus         6 LpFVrGvDfsgNDFsg~~F--P~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRF--PHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcC--chhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence            456677788888765 344  6665 77888888888888888888888888888888888888777 677788888888


Q ss_pred             EeccCCCCc--ccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCC
Q 003639          306 LSFWGSGIV--KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHL  383 (806)
Q Consensus       306 L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l  383 (806)
                      ++++.|+++  .+|..|-+|..|..|++++|. ++.+|.+ +..-+++-+|++++|.+...           .-.-+.++
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~IetI-----------Pn~lfinL  149 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIETI-----------PNSLFINL  149 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccccC-----------CchHHHhh
Confidence            888888666  678888888888888888876 8888887 78888888888887766510           11223455


Q ss_pred             CCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccccccceeeeeccccCCcchhcc
Q 003639          384 PRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLF  463 (806)
Q Consensus       384 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  463 (806)
                      ..|-.|+++.|....+|+.+                                      .-+..|+.|.|++++..     
T Consensus       150 tDLLfLDLS~NrLe~LPPQ~--------------------------------------RRL~~LqtL~Ls~NPL~-----  186 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLEMLPPQI--------------------------------------RRLSMLQTLKLSNNPLN-----  186 (1255)
T ss_pred             HhHhhhccccchhhhcCHHH--------------------------------------HHHhhhhhhhcCCChhh-----
Confidence            55666666666665555442                                      12334445555543211     


Q ss_pred             cccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccc-ccccccccccccCCCCCccEEEEecCCCCC
Q 003639          464 DLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI-KLERICQDRLSVQSFNELKTIRVEHCDQLS  542 (806)
Q Consensus       464 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~  542 (806)
                      .+....+|+++.|.+-.+                           ++-. .+..+|   .....+.+|..++++. +++.
T Consensus       187 hfQLrQLPsmtsL~vLhm---------------------------s~TqRTl~N~P---tsld~l~NL~dvDlS~-N~Lp  235 (1255)
T KOG0444|consen  187 HFQLRQLPSMTSLSVLHM---------------------------SNTQRTLDNIP---TSLDDLHNLRDVDLSE-NNLP  235 (1255)
T ss_pred             HHHHhcCccchhhhhhhc---------------------------ccccchhhcCC---Cchhhhhhhhhccccc-cCCC
Confidence            111122333322222222                           2111 011111   1244566777777765 6666


Q ss_pred             cccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccccCCcccccccCcccccc
Q 003639          543 NIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCS  622 (806)
Q Consensus       543 ~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~  622 (806)
                      .+|.  .+-.+++|+.|++++.. ++++.+                                                  
T Consensus       236 ~vPe--cly~l~~LrrLNLS~N~-iteL~~--------------------------------------------------  262 (1255)
T KOG0444|consen  236 IVPE--CLYKLRNLRRLNLSGNK-ITELNM--------------------------------------------------  262 (1255)
T ss_pred             cchH--HHhhhhhhheeccCcCc-eeeeec--------------------------------------------------
Confidence            6643  23455666666666533 332221                                                  


Q ss_pred             cccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhHhhhcc
Q 003639          623 NEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEH  702 (806)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~  702 (806)
                                        ......+|++|+++.|+++.+|...      ..+++|+.|++.+ ++|+.-..+++++.+..
T Consensus       263 ------------------~~~~W~~lEtLNlSrNQLt~LP~av------cKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  263 ------------------TEGEWENLETLNLSRNQLTVLPDAV------CKLTKLTKLYANN-NKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             ------------------cHHHHhhhhhhccccchhccchHHH------hhhHHHHHHHhcc-CcccccCCccchhhhhh
Confidence                              1113345666666666666655432      3556666666655 55554333466677777


Q ss_pred             cceEEEecccccceeeccccccCCCCCcccccccccccccccccccccCCCCCcCCCCCcCEEeEecCCCceeec
Q 003639          703 LQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD  777 (806)
Q Consensus       703 L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp  777 (806)
                      |+++...+ +.|+-+  |+++.       .++.|++|.+ +|+.|.++|.+.|  -++-|+.|+++..|+|..=|
T Consensus       318 Levf~aan-N~LElV--PEglc-------RC~kL~kL~L-~~NrLiTLPeaIH--lL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  318 LEVFHAAN-NKLELV--PEGLC-------RCVKLQKLKL-DHNRLITLPEAIH--LLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hHHHHhhc-cccccC--chhhh-------hhHHHHHhcc-cccceeechhhhh--hcCCcceeeccCCcCccCCC
Confidence            77777766 456644  55543       5677777777 3566777777644  35677777777777765444

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.79  E-value=4.9e-20  Score=191.49  Aligned_cols=132  Identities=33%  Similarity=0.507  Sum_probs=105.4

Q ss_pred             cceeeCCCCCHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHccCChhHHHHHHHHhcCC-ChhHHHHHHHHhcCCCCC
Q 003639            4 QKNFSIDILNEEEAWRLFKLVADDH--VENREFKSTATEVAQACKGLPIALTTIARALRNK-SVPEWKSALQELRMPSEV   80 (806)
Q Consensus         4 ~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~-~~~~W~~~l~~~~~~~~~   80 (806)
                      ...|++++|+.+||++||++.|+..  ...+..++++++|+++|+|+||||+++|++|+.+ +..+|+++++++.. ...
T Consensus       149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~-~~~  227 (287)
T PF00931_consen  149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELEN-SLR  227 (287)
T ss_dssp             EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHH-CHT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            4689999999999999999999432  2456778899999999999999999999999766 78999999988751 111


Q ss_pred             CCCCCchhhHhHHHHhhccCCchhHHHHHHHHhhcC--CCCChhHHHHHhhhccccccc
Q 003639           81 NFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLG--NSICTSYLFQCCMGLGILQKV  137 (806)
Q Consensus        81 ~~~~~~~~i~~~L~lsY~~L~~~~lk~cfl~~s~fp--~~i~~~~li~~wiaeG~i~~~  137 (806)
                      +..+....+..++.+||+.||++ +|+||+|||+||  +.|+++.|+++|+|||||...
T Consensus       228 ~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  228 ESRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             CSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             ccccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence            12224567999999999999998 899999999999  789999999999999999753

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.9e-18  Score=150.54  Aligned_cols=166  Identities=25%  Similarity=0.347  Sum_probs=131.5

Q ss_pred             CCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhc
Q 003639          220 HELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIG  298 (806)
Q Consensus       220 ~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~  298 (806)
                      ..++..++++++..|.++.|. .+.+  |..+ ..+++|.+|++.+|+++++|.+++.++.||.|++..|++.. |..||
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNK-l~~v--ppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNK-LTVV--PPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             hhcccccchhhhhhhhcccCc-eeec--CCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence            345556666777777777763 4555  6665 78888888888888888888888888888888888888777 88888


Q ss_pred             CCCccceEeccCCCCc--ccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhcc
Q 003639          299 KLKNLEILSFWGSGIV--KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINAR  376 (806)
Q Consensus       299 ~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~  376 (806)
                      .++-|+.||+.+|++.  .+|..|-.|+.|+.|++++|. ++.+|++ +++|++||.|.+..+...            ..
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~l  165 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SL  165 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hC
Confidence            8888888888888766  688888888888888888865 7788887 888888888888877665            56


Q ss_pred             ccccCCCCCCcEEEEEecCCCcCCccc
Q 003639          377 LDELMHLPRLATLEVHVKNDNVLPEGF  403 (806)
Q Consensus       377 ~~~L~~l~~L~~L~l~~~~~~~~~~~~  403 (806)
                      +.+++.+..|++|.|.+|....+|+.+
T Consensus       166 pkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  166 PKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             cHHHHHHHHHHHHhcccceeeecChhh
Confidence            678888888888888888888887764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=3.2e-17  Score=142.94  Aligned_cols=156  Identities=22%  Similarity=0.323  Sum_probs=142.5

Q ss_pred             CccccccccEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCccccccc
Q 003639          201 PDDIALKECYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLV  279 (806)
Q Consensus       201 ~~~~~~~~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~  279 (806)
                      ++.-.++++.++.+++|++..+|+ ..++.+|++|.++.| .+.++  |.++ +.+++||.|+++-|.+..+|..|+.++
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~l--p~~i-ssl~klr~lnvgmnrl~~lprgfgs~p  102 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEEL--PTSI-SSLPKLRILNVGMNRLNILPRGFGSFP  102 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhc--Chhh-hhchhhhheecchhhhhcCccccCCCc
Confidence            334446789999999999999987 457999999999977 57778  8887 999999999999999999999999999


Q ss_pred             CCcEEEecCcCCCC---chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEe
Q 003639          280 NLQTLCLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYM  356 (806)
Q Consensus       280 ~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l  356 (806)
                      -|++||+.+|++.+   |..|..|+-|+.|+++.|.+.-+|..++++++||.|.+..|. +-++|.+ ++.|+.|++|.+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhi  180 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHI  180 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhc
Confidence            99999999999876   899999999999999999999999999999999999999976 8899998 999999999999


Q ss_pred             ecCccc
Q 003639          357 SNCFVE  362 (806)
Q Consensus       357 ~~~~~~  362 (806)
                      .++...
T Consensus       181 qgnrl~  186 (264)
T KOG0617|consen  181 QGNRLT  186 (264)
T ss_pred             ccceee
Confidence            999876

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.46  E-value=6.8e-13  Score=149.92  Aligned_cols=156  Identities=23%  Similarity=0.260  Sum_probs=101.6

Q ss_pred             cEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecC
Q 003639          209 CYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVE  288 (806)
Q Consensus       209 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~  288 (806)
                      -..|+++.+.+..+|+... ++|+.|.+..|. +..+  |.    .+++|++|++++|.++.+|..   .++|+.|++++
T Consensus       203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~-Lt~L--P~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNN-LTSL--PA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh-cCCCEEEccCCc-CCCC--CC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence            4567777777777776332 467888877763 4445  53    356788888888888777753   45777888888


Q ss_pred             cCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCC
Q 003639          289 CMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG  367 (806)
Q Consensus       289 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~  367 (806)
                      |.++. |..   ..+|+.|++++|+++.+|..   +++|++|++++|. ++.+|..    ..+|+.|++++|.+..    
T Consensus       272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~----  336 (788)
T PRK15387        272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS----  336 (788)
T ss_pred             Cchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc----
Confidence            87766 432   25677788888887777753   4678888888765 6666642    2356667777766541    


Q ss_pred             CCchhhhccccccCCCCCCcEEEEEecCCCcCCc
Q 003639          368 PNSERINARLDELMHLPRLATLEVHVKNDNVLPE  401 (806)
Q Consensus       368 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~  401 (806)
                               +..+  ..+|+.|++++|....+|.
T Consensus       337 ---------LP~l--p~~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        337 ---------LPTL--PSGLQELSVSDNQLASLPT  359 (788)
T ss_pred             ---------cccc--ccccceEecCCCccCCCCC
Confidence                     1111  1367777777777666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.45  E-value=2.8e-13  Score=154.04  Aligned_cols=138  Identities=16%  Similarity=0.269  Sum_probs=81.0

Q ss_pred             ccEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEec
Q 003639          208 ECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV  287 (806)
Q Consensus       208 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~  287 (806)
                      +...+.+.++++..+|... .+.|+.|++.+|. +..+  |..++   .+|++|++++|.++.+|..+.  .+|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~-LtsL--P~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI-PEQITTLILDNNE-LKSL--PENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCccc-ccCCcEEEecCCC-CCcC--Chhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence            4566777777766666532 2456667766663 4445  55442   366677777776666665443  356667776


Q ss_pred             CcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCccc
Q 003639          288 ECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       288 ~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~  362 (806)
                      +|.+.. |..+.  .+|++|++++|.++.+|..+.  .+|++|++++|. ++.+|.. +.  .+|++|++++|.+.
T Consensus       250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT  317 (754)
T ss_pred             CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc
Confidence            666666 54443  356666666666666665543  366666666654 5555543 22  34556666555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.43  E-value=1.9e-12  Score=146.27  Aligned_cols=174  Identities=21%  Similarity=0.173  Sum_probs=130.8

Q ss_pred             eEEecCcccCCCCccccccccEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCC
Q 003639          189 AVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQL  268 (806)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i  268 (806)
                      ...+.+......|. .++.+++.|++..|+++.+|..  .++|++|++.+| .+..+  |.    ..++|+.|++++|.+
T Consensus       205 ~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N-~LtsL--P~----lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        205 VLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-QLTSL--PV----LPPGLLELSIFSNPL  274 (788)
T ss_pred             EEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC-ccCcc--cC----cccccceeeccCCch
Confidence            34444444554443 4567899999999999999864  589999999998 45566  64    246899999999999


Q ss_pred             ccCCcccccccCCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhc
Q 003639          269 LLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISR  347 (806)
Q Consensus       269 ~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~  347 (806)
                      ..+|..   ..+|+.|++++|.++. |.   .+++|++|++++|.++.+|...   .+|+.|++++|. +..+|.  +  
T Consensus       275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~--l--  340 (788)
T PRK15387        275 THLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT--L--  340 (788)
T ss_pred             hhhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCccccCCCCc---ccccccccccCc-cccccc--c--
Confidence            988864   3678899999999988 54   3578999999999999988633   467788898876 777775  2  


Q ss_pred             CCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCc
Q 003639          348 LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPE  401 (806)
Q Consensus       348 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~  401 (806)
                      ..+|++|++++|.+..             +..+  ..+|+.|++++|....+|.
T Consensus       341 p~~Lq~LdLS~N~Ls~-------------LP~l--p~~L~~L~Ls~N~L~~LP~  379 (788)
T PRK15387        341 PSGLQELSVSDNQLAS-------------LPTL--PSELYKLWAYNNRLTSLPA  379 (788)
T ss_pred             ccccceEecCCCccCC-------------CCCC--CcccceehhhccccccCcc
Confidence            2589999999998761             1111  2467788888777766654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.43  E-value=8.2e-15  Score=144.93  Aligned_cols=141  Identities=22%  Similarity=0.256  Sum_probs=78.9

Q ss_pred             EEecCcccCCCCccccccccEEEEEeCCCCCCCCC--CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeec-C
Q 003639          190 VLVRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTR-M  266 (806)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~  266 (806)
                      +...+.+..++| .+++.+...+.+..|.|..+|+  |..+++||.|+++.|. +..|  ....|++++.|-.|-+.+ |
T Consensus        51 VdCr~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I--~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFI--APDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhc--ChHhhhhhHhhhHHHhhcCC
Confidence            333444444444 3567777777777777777764  4456666666666553 3333  333345555555554444 5


Q ss_pred             CCccCCc-ccccccCCcEEEecCcCCCC--chhhcCCCccceEeccCCCCcccCh-hccCCCcCCEEeccCC
Q 003639          267 QLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNC  334 (806)
Q Consensus       267 ~i~~lp~-~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~  334 (806)
                      +|+++|. .|+.|..|+-|.+..|++.-  .+.+..|++|..|.+..|.+..++. .+..+..++++.+..+
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence            5666553 45556666666665555444  4555556666666666665555555 3555555555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.42  E-value=5.4e-13  Score=151.81  Aligned_cols=228  Identities=20%  Similarity=0.277  Sum_probs=165.0

Q ss_pred             ccccccEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcE
Q 003639          204 IALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQT  283 (806)
Q Consensus       204 ~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~  283 (806)
                      .++.+++.|++++|++..+|... .++|++|++.+|. +..+  |..+   ..+|+.|++++|.+..+|..+.  .+|++
T Consensus       196 ~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~-LtsL--P~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~  266 (754)
T PRK15370        196 CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQ-LTSI--PATL---PDTIQEMELSINRITELPERLP--SALQS  266 (754)
T ss_pred             ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCc-cccC--Chhh---hccccEEECcCCccCcCChhHh--CCCCE
Confidence            46778999999999999998743 3699999999885 5567  7655   2479999999999999998774  58999


Q ss_pred             EEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCccc
Q 003639          284 LCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       284 L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~  362 (806)
                      |++++|.++. |..+.  .+|++|++++|.++.+|..+.  .+|++|++++|. +..+|.. +  .++|+.|++++|.+.
T Consensus       267 L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        267 LDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALT  338 (754)
T ss_pred             EECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCccc
Confidence            9999999988 76664  589999999999999987654  579999999986 7788865 3  368999999998765


Q ss_pred             ccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccc
Q 003639          363 WDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQ  442 (806)
Q Consensus       363 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~  442 (806)
                                  .....+  .++|+.|++++|....+|..+ .                ..++.|+++.+.....|..+.
T Consensus       339 ------------~LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p----------------~~L~~LdLs~N~Lt~LP~~l~  387 (754)
T PRK15370        339 ------------SLPASL--PPELQVLDVSKNQITVLPETL-P----------------PTITTLDVSRNALTNLPENLP  387 (754)
T ss_pred             ------------cCChhh--cCcccEEECCCCCCCcCChhh-c----------------CCcCEEECCCCcCCCCCHhHH
Confidence                        112223  268999999999887777643 1                344555555554444444432


Q ss_pred             cccceeeeeccccCCcchhccccc--ccccCCCcEEEeccCC
Q 003639          443 GIKDVEYLCLEKLQDVKNVLFDLD--TEGFSQLKHLHVQNNP  482 (806)
Q Consensus       443 ~l~~L~~L~l~~~~~~~~~~~~l~--~~~~~~L~~L~l~~~~  482 (806)
                        .+|+.|+++++. +..++..++  ...++++..|.+.+++
T Consensus       388 --~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        388 --AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             --HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence              357777777653 333332221  1234666777776654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.33  E-value=5.8e-14  Score=138.99  Aligned_cols=294  Identities=19%  Similarity=0.244  Sum_probs=169.9

Q ss_pred             EEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCCcEEEecC-c
Q 003639          212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTLCLVE-C  289 (806)
Q Consensus       212 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~-~  289 (806)
                      ++-++..+.++|...- +....+.+..| .+..+  |...|+.+++||.|||++|.|+. -|+.|..++.|-.|-+.+ |
T Consensus        51 VdCr~~GL~eVP~~LP-~~tveirLdqN-~I~~i--P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLP-PETVEIRLDQN-QISSI--PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcccCcccCC-CcceEEEeccC-CcccC--ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            3344455566665321 24556677776 57777  88888888888888888888888 467888888887777766 6


Q ss_pred             CCCC-c-hhhcCCCccceEeccCCCCcccCh-hccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCccc----
Q 003639          290 MLDD-I-AIIGKLKNLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE----  362 (806)
Q Consensus       290 ~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~----  362 (806)
                      +|++ | ..|++|..|+-|.+.-|++.-++. .+..|++|..|.+.++. +..++.+.+..+..++++.+..+...    
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccc
Confidence            7888 4 668888888888888887775554 47888888888888865 77787766788888888876654322    


Q ss_pred             --ccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccc
Q 003639          363 --WDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKK  440 (806)
Q Consensus       363 --~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~  440 (806)
                        |-...     ....+.+.+.........+........+..-+...+                                
T Consensus       206 L~wla~~-----~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~--------------------------------  248 (498)
T KOG4237|consen  206 LPWLADD-----LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL--------------------------------  248 (498)
T ss_pred             cchhhhH-----HhhchhhcccceecchHHHHHHHhcccchhhhhhhH--------------------------------
Confidence              10000     000000000000000000000000000000000000                                


Q ss_pred             cccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccccccccccc
Q 003639          441 LQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD  520 (806)
Q Consensus       441 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  520 (806)
                          ..+..-....|. ...+.+..-..++++|++|+++++ .++.+...     .......+++|++.. ++++.+..+
T Consensus       249 ----esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~-----aFe~~a~l~eL~L~~-N~l~~v~~~  316 (498)
T KOG4237|consen  249 ----ESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSNN-KITRIEDG-----AFEGAAELQELYLTR-NKLEFVSSG  316 (498)
T ss_pred             ----HhHHHhhccccC-cCCcChHHHHhhcccceEeccCCC-ccchhhhh-----hhcchhhhhhhhcCc-chHHHHHHH
Confidence                000000000110 000111111256888888888877 45554211     123345677777776 356655443


Q ss_pred             ccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeec
Q 003639          521 RLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVIN  563 (806)
Q Consensus       521 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~  563 (806)
                      .  ...+..|+.|++++ ++++.+.| ..++.+.+|.+|.+-.
T Consensus       317 ~--f~~ls~L~tL~L~~-N~it~~~~-~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  317 M--FQGLSGLKTLSLYD-NQITTVAP-GAFQTLFSLSTLNLLS  355 (498)
T ss_pred             h--hhccccceeeeecC-CeeEEEec-ccccccceeeeeehcc
Confidence            3  45678899999999 88888866 3567788888888854

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.32  E-value=1.3e-12  Score=151.15  Aligned_cols=174  Identities=21%  Similarity=0.265  Sum_probs=124.1

Q ss_pred             cccEEEEEeCCC--CCCCCC--CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCc
Q 003639          207 KECYAISLRGCS--IHELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQ  282 (806)
Q Consensus       207 ~~lr~l~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~  282 (806)
                      .+++.|-+..|.  +..++.  +..++.||+|++++|....++  |..+ +.+-+||+|+++++.+..+|..+++|+.|.
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L--P~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL--PSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLI  621 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC--ChHH-hhhhhhhcccccCCCccccchHHHHHHhhh
Confidence            368899999886  556665  667999999999999888998  9887 999999999999999999999999999999


Q ss_pred             EEEecCcCC-CC-chhhcCCCccceEeccCCCCccc---ChhccCCCcCCEEeccCCccccccChhhhhcCCCCCE----
Q 003639          283 TLCLVECML-DD-IAIIGKLKNLEILSFWGSGIVKL---PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEE----  353 (806)
Q Consensus       283 ~L~L~~~~l-~~-~~~i~~L~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~----  353 (806)
                      +|++..+.- .. +..+..|.+||+|.+.......-   -..+.+|.+|+.+...... . .+-.. +..++.|+.    
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-~-~~~e~-l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-V-LLLED-LLGMTRLRSLLQS  698 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-h-HhHhh-hhhhHHHHHHhHh
Confidence            999999873 34 56667799999999987642211   1234455555555554332 1 11111 333444442    


Q ss_pred             EEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCc
Q 003639          354 LYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNV  398 (806)
Q Consensus       354 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~  398 (806)
                      +.+.++.            ....+..++.+.+|+.|.|.......
T Consensus       699 l~~~~~~------------~~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  699 LSIEGCS------------KRTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             hhhcccc------------cceeecccccccCcceEEEEcCCCch
Confidence            2222221            13456778888889999888776653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.11  E-value=5.9e-13  Score=133.19  Aligned_cols=147  Identities=20%  Similarity=0.213  Sum_probs=94.7

Q ss_pred             ccCCcceeeecce-eeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeecccc
Q 003639          644 ALSNLEVLEMNKV-NIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEG  722 (806)
Q Consensus       644 ~~~~L~~L~l~~c-~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~  722 (806)
                      ..++|+.|.++.| ++++.-...+.    .+.+.|+.+++.+|...++---.+...+++.|++|.++.|..+.+-    +
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~----g  389 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE----G  389 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh----h
Confidence            4577777777777 55443222211    2557777777777766554312234457778888888887655432    1


Q ss_pred             ccCCC-CCcccccccccccccccccccccCCCCCcCCCCCcCEEeEecCCCceeecc-cchhhcccccccCCCCCCCCCc
Q 003639          723 ADDHV-PPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS-ELFSFFKSSEEDKPDIPARQPL  800 (806)
Q Consensus       723 ~~~~~-~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp~-~~~~~l~~L~~~~~~~~~~~~~  800 (806)
                      .. .+ ........|..+++.+||.+++--.. ++..+++|+.+++.+|..+++=|. .+...+++++..+...+..-|=
T Consensus       390 i~-~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~  467 (483)
T KOG4341|consen  390 IR-HLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPG  467 (483)
T ss_pred             hh-hhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCcc
Confidence            00 00 00124667888888888877654333 356788999999999999976665 4778999998888777766663

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.10  E-value=5.3e-13  Score=133.48  Aligned_cols=289  Identities=16%  Similarity=0.136  Sum_probs=166.8

Q ss_pred             ceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccccccccC
Q 003639          446 DVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQ  525 (806)
Q Consensus       446 ~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  525 (806)
                      .|+.|.+.+|..+..-........+|++++|.+.+|.++++.    ........+++|+.|.+..|.++++.... .-..
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~----s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~  213 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS----SLLSLARYCRKLRHLNLHSCSSITDVSLK-YLAE  213 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH----HHHHHHHhcchhhhhhhcccchhHHHHHH-HHHH
Confidence            355556666555443322222244666666666666544431    11112234556666666666655543211 0123


Q ss_pred             CCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccc
Q 003639          526 SFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFC  605 (806)
Q Consensus       526 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~  605 (806)
                      .+++|++|+++.|+.+++-......+.+..++.+...+|..++.-...        ..-...+-+.++++.+|..+++..
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~--------~~~~~~~~i~~lnl~~c~~lTD~~  285 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL--------KAAAYCLEILKLNLQHCNQLTDED  285 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH--------HHhccChHhhccchhhhccccchH
Confidence            566777777777766665211123344445555555555443321100        001123344455555665444321


Q ss_pred             cCCcccccccCcccccccccccccccccccccccccccccCCcceeeecce-eeeecCCCCCcccccccCCCccEEEEec
Q 003639          606 CGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKV-NIEKIWPNQLPVAMFLCFQNLTRLILRK  684 (806)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~i~~~~~~~~~~~~l~~L~~L~l~~  684 (806)
                                                      .+.....+..|+.|+.++| ++++.....+.    ++.++|+.|.+.+
T Consensus       286 --------------------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~  329 (483)
T KOG4341|consen  286 --------------------------------LWLIACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSG  329 (483)
T ss_pred             --------------------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccc
Confidence                                            2223345788999999999 65553222221    4679999999999


Q ss_pred             CCCcceecchhhHhhhcccceEEEeccccccee--eccccccCCCCCcccccccccccccccccccccCCC---CCcCCC
Q 003639          685 CPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEI--ISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPG---MHTSEW  759 (806)
Q Consensus       685 C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i--~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~---~~~~~l  759 (806)
                      |.++++..-.....+.+.|+.+++.+|..+.+-  ....         ..+|.|+.|++++|..+++....   ....+.
T Consensus       330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls---------~~C~~lr~lslshce~itD~gi~~l~~~~c~~  400 (483)
T KOG4341|consen  330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS---------RNCPRLRVLSLSHCELITDEGIRHLSSSSCSL  400 (483)
T ss_pred             cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc---------cCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence            999887644445578899999999998655432  1111         16999999999999988876211   112345


Q ss_pred             CCcCEEeEecCCCceeecccchhhcccccccCC
Q 003639          760 PALKLLDVSACDQVTVFDSELFSFFKSSEEDKP  792 (806)
Q Consensus       760 ~sL~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~  792 (806)
                      ..|+.+.+.+||.++.-.......-++|+.+..
T Consensus       401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l  433 (483)
T KOG4341|consen  401 EGLEVLELDNCPLITDATLEHLSICRNLERIEL  433 (483)
T ss_pred             cccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence            789999999999986555555667777766543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.07  E-value=7.1e-11  Score=125.03  Aligned_cols=181  Identities=22%  Similarity=0.170  Sum_probs=113.6

Q ss_pred             ccEEEEEeCCCCC-----CCCC-CCCCCCccEEEecCCCCcc--c-ccCCChhhhcCCCceEEEeecCCCcc-CCccccc
Q 003639          208 ECYAISLRGCSIH-----ELPE-GLECPRLEFLHINPKDSLF--D-INNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDL  277 (806)
Q Consensus       208 ~lr~l~l~~~~~~-----~l~~-~~~~~~Lr~L~l~~~~~~~--~-~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~  277 (806)
                      .++.+.+.++.+.     .+++ ....+.++.|.+.++....  . +......+..+.+|+.|++++|.+.. .+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            4677777777762     2222 2345667888777764321  0 00011234667888888888887764 4444544


Q ss_pred             ccC---CcEEEecCcCCCC------chhhcCC-CccceEeccCCCCc-----ccChhccCCCcCCEEeccCCcccc----
Q 003639          278 LVN---LQTLCLVECMLDD------IAIIGKL-KNLEILSFWGSGIV-----KLPEELGHLTKLRQLDLSNCFKLK----  338 (806)
Q Consensus       278 l~~---L~~L~L~~~~l~~------~~~i~~L-~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~----  338 (806)
                      +.+   |++|++++|.+..      ...+..+ ++|+.|++++|.++     .++..+..+++|++|++++|. ++    
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~  182 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGI  182 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHH
Confidence            444   8888888888763      2345666 88888888888776     344556777888888888875 43    


Q ss_pred             -ccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639          339 -VIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN  397 (806)
Q Consensus       339 -~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  397 (806)
                       .++.. +...++|++|++++|.+.       ..........+..+++|+.|+++++...
T Consensus       183 ~~l~~~-l~~~~~L~~L~L~~n~i~-------~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         183 RALAEG-LKANCNLEVLDLNNNGLT-------DEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHH-HHhCCCCCEEeccCCccC-------hHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence             22222 455668888888887664       1111223345666778888888876644

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.00  E-value=1.9e-11  Score=126.97  Aligned_cols=177  Identities=24%  Similarity=0.273  Sum_probs=149.8

Q ss_pred             ccEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEe
Q 003639          208 ECYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCL  286 (806)
Q Consensus       208 ~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L  286 (806)
                      .....+++.|++..+|. ...+-.|..+.+..|. +..+  |..+ .++..|.+|+|+.|++..+|..++.|+ |++|-+
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~i--p~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTI--PEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceec--chhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence            45667788888888886 3446778888888774 4455  6665 899999999999999999999887765 999999


Q ss_pred             cCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccC
Q 003639          287 VECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD  365 (806)
Q Consensus       287 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~  365 (806)
                      ++|+++. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|++..|. +..+|.+ +..| .|..|+++.|.+.   
T Consensus       151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis---  224 (722)
T KOG0532|consen  151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS---  224 (722)
T ss_pred             ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee---
Confidence            9999998 999999999999999999999999999999999999999876 8889988 7744 5889999988876   


Q ss_pred             CCCCchhhhccccccCCCCCCcEEEEEecCCCcCCcccc
Q 003639          366 EGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFF  404 (806)
Q Consensus       366 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~  404 (806)
                               ..+..+.+|+.|++|.+.+|....-|..+.
T Consensus       225 ---------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  225 ---------YLPVDFRKMRHLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             ---------ecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence                     566788999999999999999888887765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=7.8e-11  Score=112.71  Aligned_cols=184  Identities=16%  Similarity=0.194  Sum_probs=141.5

Q ss_pred             ccccccEEEEEeCCCCCCCCCC-CCCCCccEEEecCCCCcc---cccCCChh-------------------hhcCCCceE
Q 003639          204 IALKECYAISLRGCSIHELPEG-LECPRLEFLHINPKDSLF---DINNPCNF-------------------FTGMRKLRV  260 (806)
Q Consensus       204 ~~~~~lr~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~---~~~~~~~~-------------------~~~l~~Lr~  260 (806)
                      .+.+++..+-++.+.-+.+... ..-+.|.++.+.......   -+  |...                   ....+.|..
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~--pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL--PETILADPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc--chhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence            3456667777776665544442 234567777766532110   00  1100                   123467999


Q ss_pred             EEeecCCCccCCcccccccCCcEEEecCcCCCCchhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCcccccc
Q 003639          261 VDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVI  340 (806)
Q Consensus       261 L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~  340 (806)
                      +||++|.|+.+.+++.-++.+|.|++++|.+....++..|.+|+.|||++|.++++-.+=.+|-|.++|.+++|. +.++
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~L  367 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETL  367 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhh
Confidence            999999999999999999999999999999999888999999999999999988887777788999999999976 7777


Q ss_pred             ChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCcc
Q 003639          341 APNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEG  402 (806)
Q Consensus       341 p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~  402 (806)
                      ..  +++|-+|..|++++|.+.          .-..+..+++++.|+.+.+.+|....++..
T Consensus       368 SG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  368 SG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence            54  899999999999999875          234567899999999999999987766643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.96  E-value=2.9e-11  Score=125.70  Aligned_cols=188  Identities=23%  Similarity=0.321  Sum_probs=155.7

Q ss_pred             EEEEeCCCCCCCCC---CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEec
Q 003639          211 AISLRGCSIHELPE---GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV  287 (806)
Q Consensus       211 ~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~  287 (806)
                      ++.|++.++..+|.   ...+......+++.| ....+  |..+ ..+..|..+.++.|.+..+|..++++..|.+|||+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~el--p~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSEL--PEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS  129 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhcccc-ccccC--chHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc
Confidence            34555555555542   244555666777777 45666  7776 88899999999999999999999999999999999


Q ss_pred             CcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCC
Q 003639          288 ECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDE  366 (806)
Q Consensus       288 ~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~  366 (806)
                      .|.+.. |..++.|+ |+.|-+++|+++.+|..|+.+..|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|.+.    
T Consensus       130 ~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~----  202 (722)
T KOG0532|consen  130 SNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE----  202 (722)
T ss_pred             cchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh----
Confidence            999998 88888876 899999999999999999999999999999987 8899988 999999999999988776    


Q ss_pred             CCCchhhhccccccCCCCCCcEEEEEecCCCcCCcccc-ccccceEEEeeeec
Q 003639          367 GPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFF-ARKLERLSWALFAI  418 (806)
Q Consensus       367 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~~~~~~~  418 (806)
                              ..+.++..|+ |..|++++|.+..+|-.+. ++.|+.|.++.++.
T Consensus       203 --------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  203 --------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             --------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence                    5667777664 8999999999999998875 67777776665544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=3.8e-10  Score=104.46  Aligned_cols=133  Identities=26%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-ch
Q 003639          217 CSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IA  295 (806)
Q Consensus       217 ~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~  295 (806)
                      +.++..+...++.++|.|++.++. +..+  . .+-..+.+|++|++++|.|+.++ .+..+++|++|++++|.++. .+
T Consensus         7 ~~i~~~~~~~n~~~~~~L~L~~n~-I~~I--e-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen    7 NMIEQIAQYNNPVKLRELNLRGNQ-ISTI--E-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred             cccccccccccccccccccccccc-cccc--c-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence            344455555555556666666653 2222  1 11113455666666666665554 34555666666666666555 23


Q ss_pred             hh-cCCCccceEeccCCCCcccC--hhccCCCcCCEEeccCCccccccC---hhhhhcCCCCCEEE
Q 003639          296 II-GKLKNLEILSFWGSGIVKLP--EELGHLTKLRQLDLSNCFKLKVIA---PNVISRLVRLEELY  355 (806)
Q Consensus       296 ~i-~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p---~~~l~~L~~L~~L~  355 (806)
                      .+ ..+++|++|++++|+|..+.  ..+..+++|++|++.+|+ +...+   .-++..+++|+.|+
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEET
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeC
Confidence            33 24556666666655554332  124455555555555554 22222   12244555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.92  E-value=6.6e-10  Score=117.60  Aligned_cols=239  Identities=18%  Similarity=0.102  Sum_probs=130.5

Q ss_pred             CCCCccEEEecCCCCcc----cccCCChhhhcCCCceEEEeecCCCcc-------CCcccccccCCcEEEecCcCCCC--
Q 003639          227 ECPRLEFLHINPKDSLF----DINNPCNFFTGMRKLRVVDFTRMQLLL-------LPSSIDLLVNLQTLCLVECMLDD--  293 (806)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~----~~~~~~~~~~~l~~Lr~L~L~~~~i~~-------lp~~l~~l~~L~~L~L~~~~l~~--  293 (806)
                      .++.|+.|.+.++....    .+  + ..+...+.++.|+++++.+..       ++..+..+++|++|++++|.+..  
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i--~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKAL--A-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHH--H-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            34557777777765311    12  2 223556667777777776552       33455667778888887777653  


Q ss_pred             chhhcCCCc---cceEeccCCCCc-----ccChhccCC-CcCCEEeccCCcccc-----ccChhhhhcCCCCCEEEeecC
Q 003639          294 IAIIGKLKN---LEILSFWGSGIV-----KLPEELGHL-TKLRQLDLSNCFKLK-----VIAPNVISRLVRLEELYMSNC  359 (806)
Q Consensus       294 ~~~i~~L~~---L~~L~L~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~-----~~p~~~l~~L~~L~~L~l~~~  359 (806)
                      +..+..+.+   |++|++++|.+.     .+...+..+ ++|+.|++++|. +.     .++.. +..+++|++|++++|
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n  175 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANN  175 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCC
Confidence            444544444   788888777665     233345566 777778777776 33     22222 556667777777777


Q ss_pred             cccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCccccccc
Q 003639          360 FVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSK  439 (806)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~  439 (806)
                      .+.+       .........+..+++|+.|+++++........                                 ....
T Consensus       176 ~l~~-------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---------------------------------~l~~  215 (319)
T cd00116         176 GIGD-------AGIRALAEGLKANCNLEVLDLNNNGLTDEGAS---------------------------------ALAE  215 (319)
T ss_pred             CCch-------HHHHHHHHHHHhCCCCCEEeccCCccChHHHH---------------------------------HHHH
Confidence            6541       11112233445556777777776654321110                                 0112


Q ss_pred             ccccccceeeeeccccCCcchhcccccc---cccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccc
Q 003639          440 KLQGIKDVEYLCLEKLQDVKNVLFDLDT---EGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI  512 (806)
Q Consensus       440 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  512 (806)
                      .+..+++|++|++++|.........+..   ...+.|++|++.+|. ++.. +..........+++|+.+++.++.
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~-~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDD-GAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcH-HHHHHHHHHhcCCCccEEECCCCC
Confidence            2334677888888776432211111100   124688888888873 2210 000001122345788888888753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1.4e-09  Score=100.61  Aligned_cols=122  Identities=21%  Similarity=0.358  Sum_probs=56.9

Q ss_pred             cccEEEEEeCCCCCCCCCCC-CCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCccc-ccccCCcEE
Q 003639          207 KECYAISLRGCSIHELPEGL-ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTL  284 (806)
Q Consensus       207 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l-~~l~~L~~L  284 (806)
                      ...|.|+++++.+..+.... .+.+|++|++++|. +..+  + . +..+++|++|++++|.|+.+++.+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l--~-~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKL--E-G-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS---S----T-T-----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccchhhhhcCCCEEECCCCC-Cccc--c-C-ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            45799999999998887754 57899999999995 5555  3 3 478999999999999999987655 469999999


Q ss_pred             EecCcCCCC---chhhcCCCccceEeccCCCCcccCh----hccCCCcCCEEeccC
Q 003639          285 CLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPE----ELGHLTKLRQLDLSN  333 (806)
Q Consensus       285 ~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~  333 (806)
                      ++++|.+.+   ...++.+++|++|++.+|.+...+.    -|..+++|+.||-..
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            999999876   5778899999999999998886654    378899999998754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=6.7e-09  Score=113.18  Aligned_cols=174  Identities=25%  Similarity=0.315  Sum_probs=108.8

Q ss_pred             cccEEEEEeCCCCCCCCCCCCCC--CccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEE
Q 003639          207 KECYAISLRGCSIHELPEGLECP--RLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTL  284 (806)
Q Consensus       207 ~~lr~l~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L  284 (806)
                      ..+..+++.++.+.+++......  +|+.|++.+|. +..+  |..+ ..++.|+.|++++|++..+|...+.+..|+.|
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l--~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESL--PSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccc-hhhh--hhhh-hccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            34667777777777776655443  67777777663 3333  3232 66777777777777777776666666777777


Q ss_pred             EecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccc
Q 003639          285 CLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEW  363 (806)
Q Consensus       285 ~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~  363 (806)
                      ++++|.+.. |..++.+.+|++|.+++|.+...+..+.++.++..+.+.++. +..++.. ++.+.+++.|+++++.+. 
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~-  268 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS-  268 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc-
Confidence            777777666 555566666777777776555666666677777766665544 4444443 666777777777666554 


Q ss_pred             cCCCCCchhhhccccccCCCCCCcEEEEEecCCCcC
Q 003639          364 DDEGPNSERINARLDELMHLPRLATLEVHVKNDNVL  399 (806)
Q Consensus       364 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~  399 (806)
                                  .+..++.+.+++.|+++++.....
T Consensus       269 ------------~i~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         269 ------------SISSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ------------ccccccccCccCEEeccCcccccc
Confidence                        222366666777777766655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.65  E-value=2.1e-08  Score=109.30  Aligned_cols=104  Identities=31%  Similarity=0.417  Sum_probs=52.5

Q ss_pred             cCCCceEEEeecCCCccCCccccccc-CCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEec
Q 003639          254 GMRKLRVVDFTRMQLLLLPSSIDLLV-NLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL  331 (806)
Q Consensus       254 ~l~~Lr~L~L~~~~i~~lp~~l~~l~-~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  331 (806)
                      .+..++.|++.++.+..+|.....+. +|+.|+++++.+.. |..++.+++|+.|++++|.+..+|...+.+.+|+.|++
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            33445555555555555555444443 55555555555554 34555555555555555555555554445555555555


Q ss_pred             cCCccccccChhhhhcCCCCCEEEeecC
Q 003639          332 SNCFKLKVIAPNVISRLVRLEELYMSNC  359 (806)
Q Consensus       332 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~  359 (806)
                      +++. +..+|.. ++.+..|++|.++++
T Consensus       194 s~N~-i~~l~~~-~~~~~~L~~l~~~~N  219 (394)
T COG4886         194 SGNK-ISDLPPE-IELLSALEELDLSNN  219 (394)
T ss_pred             cCCc-cccCchh-hhhhhhhhhhhhcCC
Confidence            5543 4555543 334444555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=9.1e-09  Score=104.23  Aligned_cols=188  Identities=22%  Similarity=0.194  Sum_probs=130.0

Q ss_pred             ccccEEEEEeCCCCCCCCC---CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcc--cccccC
Q 003639          206 LKECYAISLRGCSIHELPE---GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSS--IDLLVN  280 (806)
Q Consensus       206 ~~~lr~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~--l~~l~~  280 (806)
                      .+.+|.+++.++.+...+.   ...|+++|.|++++|- +..+..-..+...+++|+.|+++.|.+....++  -..+.+
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            5678999999888866652   4569999999999883 211100124567899999999999987654332  236889


Q ss_pred             CcEEEecCcCCCC---chhhcCCCccceEeccCC-CCcccChhccCCCcCCEEeccCCccccccCh-hhhhcCCCCCEEE
Q 003639          281 LQTLCLVECMLDD---IAIIGKLKNLEILSFWGS-GIVKLPEELGHLTKLRQLDLSNCFKLKVIAP-NVISRLVRLEELY  355 (806)
Q Consensus       281 L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~  355 (806)
                      |+.|.++.|.++.   ......+++|..|+|.+| .+..--.....+..|+.|++++|. +..++. ...+.++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh
Confidence            9999999999875   345567899999999998 433333345667889999999977 555542 1278899999999


Q ss_pred             eecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCC
Q 003639          356 MSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLP  400 (806)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~  400 (806)
                      ++.|.+... ..+    ..........+++|+.|++..|.+...+
T Consensus       278 ls~tgi~si-~~~----d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  278 LSSTGIASI-AEP----DVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             ccccCcchh-cCC----CccchhhhcccccceeeecccCcccccc
Confidence            988876511 100    1112233456778888888877765443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.56  E-value=8.9e-09  Score=98.87  Aligned_cols=130  Identities=24%  Similarity=0.218  Sum_probs=98.3

Q ss_pred             CCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhcCCCccce
Q 003639          227 ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEI  305 (806)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~  305 (806)
                      .+..|.++++++|. +..+  ..+. +-.+.+|+|++++|.+..+-. +..+++|+.|||++|.++. ..--.+|-|..+
T Consensus       282 TWq~LtelDLS~N~-I~~i--DESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNL-ITQI--DESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccc-hhhh--hhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence            46678888888884 4444  4443 667888999999998887654 7888899999999988777 333347778888


Q ss_pred             EeccCCCCcccChhccCCCcCCEEeccCCccccccCh-hhhhcCCCCCEEEeecCcccc
Q 003639          306 LSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAP-NVISRLVRLEELYMSNCFVEW  363 (806)
Q Consensus       306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~  363 (806)
                      |.|++|.|..+. ++++|.+|..|++++|. +..+.. ..+|+|+.|+++.+.+|.+..
T Consensus       357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  357 LKLAQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eehhhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence            899998888774 68889999999998876 555432 228899999999888887653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.53  E-value=2.2e-07  Score=96.68  Aligned_cols=161  Identities=15%  Similarity=0.188  Sum_probs=92.5

Q ss_pred             CCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccc
Q 003639          526 SFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFC  605 (806)
Q Consensus       526 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~  605 (806)
                      .+++++.|++++| .++.+|     .-.++|++|.+.+|..++.++.          .  ..++|+.|.+.+|+++..+|
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~----------~--LP~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPG----------S--IPEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCc----------h--hhhhhhheEccCcccccccc
Confidence            3578888999987 788775     2345788888888888876651          1  23578888888887665443


Q ss_pred             cCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCccEEEEecC
Q 003639          606 CGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKC  685 (806)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~L~l~~C  685 (806)
                                                              ++|+.|++.++....+.  .+|       ++|+.|.+.++
T Consensus       112 ----------------------------------------~sLe~L~L~~n~~~~L~--~LP-------ssLk~L~I~~~  142 (426)
T PRK15386        112 ----------------------------------------ESVRSLEIKGSATDSIK--NVP-------NGLTSLSINSY  142 (426)
T ss_pred             ----------------------------------------cccceEEeCCCCCcccc--cCc-------chHhheecccc
Confidence                                                    34666666654333221  122       46777777543


Q ss_pred             CCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccccccccccccccc--cccccCCC-CCcCCCCCc
Q 003639          686 PKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLP--ELKCLYPG-MHTSEWPAL  762 (806)
Q Consensus       686 ~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~L~~l~~~-~~~~~l~sL  762 (806)
                      +.....+..  ..-+++|++|+|++|..+. +  +.+         .+.+|+.|.++.+.  .+ .++.. .+    +++
T Consensus       143 n~~~~~~lp--~~LPsSLk~L~Is~c~~i~-L--P~~---------LP~SLk~L~ls~n~~~sL-eI~~~sLP----~nl  203 (426)
T PRK15386        143 NPENQARID--NLISPSLKTLSLTGCSNII-L--PEK---------LPESLQSITLHIEQKTTW-NISFEGFP----DGL  203 (426)
T ss_pred             ccccccccc--cccCCcccEEEecCCCccc-C--ccc---------ccccCcEEEecccccccc-cCcccccc----ccc
Confidence            322111000  0123578888888876442 1  222         46678888876542  11 12221 21    345


Q ss_pred             CEEeEecCCCc
Q 003639          763 KLLDVSACDQV  773 (806)
Q Consensus       763 ~~L~i~~C~~L  773 (806)
                       .|.+.+|-++
T Consensus       204 -~L~f~n~lkL  213 (426)
T PRK15386        204 -DIDLQNSVLL  213 (426)
T ss_pred             -Eechhhhccc
Confidence             6777777543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.46  E-value=1.8e-07  Score=97.31  Aligned_cols=118  Identities=22%  Similarity=0.367  Sum_probs=78.1

Q ss_pred             ccccCCcceeeecceeeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccc
Q 003639          642 KVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKE  721 (806)
Q Consensus       642 ~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~  721 (806)
                      +..+.+++.|+|++|.++.+|.  .|       ++|++|.|++|++|+.+|  +.+  .++|++|+|++|.++..+    
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~--LP-------~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sL----  110 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV--LP-------NELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGL----  110 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC--CC-------CCCcEEEccCCCCcccCC--chh--hhhhhheEccCccccccc----
Confidence            3456899999999998888862  33       679999999999998885  322  468999999999877655    


Q ss_pred             cccCCCCCcccccccccccccc--cccccccCCCCC---c------------CCC-CCcCEEeEecCCCceeecccchhh
Q 003639          722 GADDHVPPNFVFLQVTTLILLG--LPELKCLYPGMH---T------------SEW-PALKLLDVSACDQVTVFDSELFSF  783 (806)
Q Consensus       722 ~~~~~~~~~~~~~~L~~L~l~~--c~~L~~l~~~~~---~------------~~l-~sL~~L~i~~C~~L~~lp~~~~~~  783 (806)
                                 +++|+.|.+..  |..+..+|.++.   +            ..+ ++|++|.|.+|..+ .+|..++.+
T Consensus       111 -----------P~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP~S  178 (426)
T PRK15386        111 -----------PESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLPES  178 (426)
T ss_pred             -----------ccccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccccc
Confidence                       23333333322  222333333310   0            011 58999999888865 466667666


Q ss_pred             ccccc
Q 003639          784 FKSSE  788 (806)
Q Consensus       784 l~~L~  788 (806)
                      |+.|.
T Consensus       179 Lk~L~  183 (426)
T PRK15386        179 LQSIT  183 (426)
T ss_pred             CcEEE
Confidence            66665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.2e-07  Score=96.23  Aligned_cols=181  Identities=19%  Similarity=0.159  Sum_probs=132.1

Q ss_pred             ccccccEEEEEeCCCCCCCCC---C-CCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc--CCccccc
Q 003639          204 IALKECYAISLRGCSIHELPE---G-LECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL--LPSSIDL  277 (806)
Q Consensus       204 ~~~~~lr~l~l~~~~~~~l~~---~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~l~~  277 (806)
                      ....++|.|+++.|-+.....   + ..+++|+.|.++.|......  ....-..+.+|+.|.++.|+++.  +-..+..
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~--~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI--SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc--cccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            456789999999987643332   2 35899999999998644333  22223568999999999999874  4445567


Q ss_pred             ccCCcEEEecCcC-CCC-chhhcCCCccceEeccCCCCcccC--hhccCCCcCCEEeccCCcccccc--Ch-h---hhhc
Q 003639          278 LVNLQTLCLVECM-LDD-IAIIGKLKNLEILSFWGSGIVKLP--EELGHLTKLRQLDLSNCFKLKVI--AP-N---VISR  347 (806)
Q Consensus       278 l~~L~~L~L~~~~-l~~-~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~--p~-~---~l~~  347 (806)
                      +++|..|+|.+|. +.. -....-+..|+.|||++|.+..++  .-++.++.|+.|+++.|. +.++  |. +   ....
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT  299 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence            8999999999995 322 445566788999999999888777  458999999999999876 5443  22 1   1356


Q ss_pred             CCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639          348 LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN  397 (806)
Q Consensus       348 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  397 (806)
                      .++|++|++..|.+.          .-..+..+..+++|+.|.+..+...
T Consensus       300 f~kL~~L~i~~N~I~----------~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  300 FPKLEYLNISENNIR----------DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccceeeecccCccc----------cccccchhhccchhhhhhccccccc
Confidence            789999999998874          1135567777788888887765543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.5e-08  Score=97.40  Aligned_cols=82  Identities=28%  Similarity=0.376  Sum_probs=47.0

Q ss_pred             CcEEEecCcCCCC---chhhcCCCccceEeccCCCCc-ccChhccCCCcCCEEeccCCccccccChh-hhhcCCCCCEEE
Q 003639          281 LQTLCLVECMLDD---IAIIGKLKNLEILSFWGSGIV-KLPEELGHLTKLRQLDLSNCFKLKVIAPN-VISRLVRLEELY  355 (806)
Q Consensus       281 L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-~l~~L~~L~~L~  355 (806)
                      |++|||+...++.   ..-+..+.+|+.|.+.+..+. .+-..|.+-.+|+.|+++.|..++..... .+.+++.|+.|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            4555555544443   233444555555555555444 23334556667777777777666554322 357778888888


Q ss_pred             eecCccc
Q 003639          356 MSNCFVE  362 (806)
Q Consensus       356 l~~~~~~  362 (806)
                      +++|...
T Consensus       267 lsWc~l~  273 (419)
T KOG2120|consen  267 LSWCFLF  273 (419)
T ss_pred             chHhhcc
Confidence            8888665

>PLN03150 hypothetical protein; Provisional

Probab=98.41  E-value=6.2e-07  Score=102.38  Aligned_cols=101  Identities=22%  Similarity=0.329  Sum_probs=50.4

Q ss_pred             ceEEEeecCCCcc-CCcccccccCCcEEEecCcCCCC--chhhcCCCccceEeccCCCCc-ccChhccCCCcCCEEeccC
Q 003639          258 LRVVDFTRMQLLL-LPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIV-KLPEELGHLTKLRQLDLSN  333 (806)
Q Consensus       258 Lr~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~  333 (806)
                      ++.|+|++|.+.. +|..++++++|++|+|++|.+..  |..++.+++|++|+|++|.+. .+|..+++|++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            4455555555543 45555555555555555555543  445555555555555555554 4455555555555555555


Q ss_pred             CccccccChhhhhc-CCCCCEEEeecC
Q 003639          334 CFKLKVIAPNVISR-LVRLEELYMSNC  359 (806)
Q Consensus       334 ~~~l~~~p~~~l~~-L~~L~~L~l~~~  359 (806)
                      |.....+|.. ++. ..++..+++.+|
T Consensus       500 N~l~g~iP~~-l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        500 NSLSGRVPAA-LGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcccccCChH-HhhccccCceEEecCC
Confidence            5433344443 332 233444444433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.39  E-value=2.9e-07  Score=69.81  Aligned_cols=54  Identities=30%  Similarity=0.358  Sum_probs=21.5

Q ss_pred             ceEEEeecCCCccCC-cccccccCCcEEEecCcCCCC--chhhcCCCccceEeccCC
Q 003639          258 LRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGS  311 (806)
Q Consensus       258 Lr~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~  311 (806)
                      |++|++++|.++.+| ..+..+++|++|++++|.++.  +..|.++++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            344444444444433 233334444444444444333  233344444444444433

...

>PLN03150 hypothetical protein; Provisional

Probab=98.39  E-value=6.9e-07  Score=102.00  Aligned_cols=107  Identities=19%  Similarity=0.301  Sum_probs=92.4

Q ss_pred             CccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCCcEEEecCcCCCC--chhhcCCCccceE
Q 003639          230 RLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEIL  306 (806)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L  306 (806)
                      .++.|++.++.....+  |..+ .++++|++|+|++|.+.. +|..++.+++|++|+|++|.+..  |..++++++|++|
T Consensus       419 ~v~~L~L~~n~L~g~i--p~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFI--PNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccC--CHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            4788999988776677  7765 999999999999999984 99999999999999999999986  8999999999999


Q ss_pred             eccCCCCc-ccChhccCC-CcCCEEeccCCccccc
Q 003639          307 SFWGSGIV-KLPEELGHL-TKLRQLDLSNCFKLKV  339 (806)
Q Consensus       307 ~L~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~~  339 (806)
                      +|++|.+. .+|..++.+ .++..+++.+|..+..
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence            99999888 889888764 5778888888764433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.34  E-value=4.3e-07  Score=68.85  Aligned_cols=57  Identities=37%  Similarity=0.510  Sum_probs=27.1

Q ss_pred             ccceEeccCCCCcccCh-hccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecC
Q 003639          302 NLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC  359 (806)
Q Consensus       302 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~  359 (806)
                      +|++|++++|+++.+|. .+..+++|++|++++|. ++.++++.+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence            34444444444444443 24445555555555443 44444444455555555555444

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.20  E-value=1.8e-08  Score=108.08  Aligned_cols=174  Identities=23%  Similarity=0.245  Sum_probs=124.5

Q ss_pred             ccccEEEEEeCCCCCCCCCCCC-CCCccEEEecCCC---------CcccccCCChhhhcCCCceEEEeecCCCccCCccc
Q 003639          206 LKECYAISLRGCSIHELPEGLE-CPRLEFLHINPKD---------SLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSI  275 (806)
Q Consensus       206 ~~~lr~l~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~---------~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l  275 (806)
                      .+.+|+|-+.++.+........ -..|++|.....-         ..+++  ..++  .-..|.+.+.++|.+..+..++
T Consensus       108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~--~ns~--~Wn~L~~a~fsyN~L~~mD~SL  183 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDI--SNSP--VWNKLATASFSYNRLVLMDESL  183 (1096)
T ss_pred             ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccc--ccch--hhhhHhhhhcchhhHHhHHHHH
Confidence            4578899988888755433222 1244444443221         11122  1111  1246778888889888888888


Q ss_pred             ccccCCcEEEecCcCCCCchhhcCCCccceEeccCCCCcccChh-ccCCCcCCEEeccCCccccccChhhhhcCCCCCEE
Q 003639          276 DLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEEL  354 (806)
Q Consensus       276 ~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L  354 (806)
                      .-+++|+.|||++|+++..+.+..|.+|.+|||++|.+..+|.- ...+. |+.|++++|. ++.+-.  +.+|.+|+.|
T Consensus       184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g--ie~LksL~~L  259 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG--IENLKSLYGL  259 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhh--HHhhhhhhcc
Confidence            88999999999999999877899999999999999999888863 23333 9999999876 777754  8999999999


Q ss_pred             EeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639          355 YMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN  397 (806)
Q Consensus       355 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  397 (806)
                      +++.|-+.          ....+.-|..+..|+.|.+.||...
T Consensus       260 DlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  260 DLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             chhHhhhh----------cchhhhHHHHHHHHHHHhhcCCccc
Confidence            99988665          1234566677778888888887653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.18  E-value=1.7e-07  Score=102.15  Aligned_cols=107  Identities=26%  Similarity=0.320  Sum_probs=81.6

Q ss_pred             hcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCCchhhcCCCccceEeccCCCCcccChhccCCCcCCEEecc
Q 003639          253 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLS  332 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  332 (806)
                      ..++.|.+|++.+|.|..+...+..+++|++|++++|.|+....+..+..|+.|++++|.|+.++ ++..+++|+.++++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence            67788888888888888776557778888888888888888777778888888888888887764 46668888888888


Q ss_pred             CCccccccCh-hhhhcCCCCCEEEeecCccc
Q 003639          333 NCFKLKVIAP-NVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       333 ~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~  362 (806)
                      +|. +..+.. . +..+.+++.+.+.++.+.
T Consensus       171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  171 YNR-IVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             cch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence            876 555554 2 367778888887777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.01  E-value=6.3e-06  Score=56.96  Aligned_cols=37  Identities=32%  Similarity=0.435  Sum_probs=18.0

Q ss_pred             CceEEEeecCCCccCCcccccccCCcEEEecCcCCCC
Q 003639          257 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD  293 (806)
Q Consensus       257 ~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~  293 (806)
                      +|++|++++|.|+++|..+++|++|++|++++|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            4455555555555555445555555555555554443

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=7.1e-07  Score=86.15  Aligned_cols=173  Identities=23%  Similarity=0.209  Sum_probs=122.4

Q ss_pred             cccEEEEEeCCCCCC--CCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecC-CCcc--CCcccccccC
Q 003639          207 KECYAISLRGCSIHE--LPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRM-QLLL--LPSSIDLLVN  280 (806)
Q Consensus       207 ~~lr~l~l~~~~~~~--l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~--lp~~l~~l~~  280 (806)
                      ..+++++++...++.  +.. ...|++|+-|.+.|+.....+  -..+ .+=.+|+.|+++.+ ++++  +--.+.++..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH--HHHH-hccccceeeccccccccchhHHHHHHHhhhh
Confidence            458899998877632  221 235888999999888655444  3333 77789999999986 4544  2234678999


Q ss_pred             CcEEEecCcCCCCc------hhhcCCCccceEeccCC--CC--cccChhccCCCcCCEEeccCCccccccChhhhhcCCC
Q 003639          281 LQTLCLVECMLDDI------AIIGKLKNLEILSFWGS--GI--VKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVR  350 (806)
Q Consensus       281 L~~L~L~~~~l~~~------~~i~~L~~L~~L~L~~~--~l--~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~  350 (806)
                      |..|++++|.+..+      .+++  .+|..|+++|+  ++  ..+..-..++++|.+||+++|..++.--...+.+++.
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            99999999986552      2233  46888899987  22  2333336788999999999987666533344788999


Q ss_pred             CCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEec
Q 003639          351 LEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVK  394 (806)
Q Consensus       351 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~  394 (806)
                      |++|.++.|+..          ....+-++...+.|.+|++.+.
T Consensus       340 L~~lSlsRCY~i----------~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  340 LQHLSLSRCYDI----------IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             heeeehhhhcCC----------ChHHeeeeccCcceEEEEeccc
Confidence            999999999765          1245567888889999998754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.95  E-value=8.9e-07  Score=96.58  Aligned_cols=170  Identities=23%  Similarity=0.290  Sum_probs=114.9

Q ss_pred             cEEEEEeCCCCCCC-CCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEec
Q 003639          209 CYAISLRGCSIHEL-PEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV  287 (806)
Q Consensus       209 lr~l~l~~~~~~~l-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~  287 (806)
                      +..+++..+.+..+ .....+.++..|++.+|. +..+  . ..+..+.+|++|++++|.|+.+. .+..+..|+.|++.
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i--~-~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKI--E-NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccccc-hhhc--c-cchhhhhcchheecccccccccc-chhhccchhhheec
Confidence            44444566666552 224567788888888774 3333  2 21367889999999999888875 46678889999999


Q ss_pred             CcCCCCchhhcCCCccceEeccCCCCcccChh-ccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCC
Q 003639          288 ECMLDDIAIIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDE  366 (806)
Q Consensus       288 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~  366 (806)
                      +|.++....+..+++|+.+++++|.+..+... ...+.+|+.+.+.++. +..+..  +..+..+..+++..+.+.    
T Consensus       149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~----  221 (414)
T KOG0531|consen  149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS----  221 (414)
T ss_pred             cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce----
Confidence            99988877788899999999999988877654 5788888888888876 444432  444555555566555543    


Q ss_pred             CCCchhhhccccccCCCCC--CcEEEEEecCCCcC
Q 003639          367 GPNSERINARLDELMHLPR--LATLEVHVKNDNVL  399 (806)
Q Consensus       367 ~~~~~~~~~~~~~L~~l~~--L~~L~l~~~~~~~~  399 (806)
                               .+..+..+..  |+.+++.++.....
T Consensus       222 ---------~~~~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  222 ---------KLEGLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             ---------eccCcccchhHHHHHHhcccCccccc
Confidence                     2233333333  67777776665544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=1.2e-05  Score=55.60  Aligned_cols=38  Identities=42%  Similarity=0.535  Sum_probs=18.6

Q ss_pred             ccceEeccCCCCcccChhccCCCcCCEEeccCCcccccc
Q 003639          302 NLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVI  340 (806)
Q Consensus       302 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~  340 (806)
                      +|++|++++|.|+.+|..+++|++|++|++++|. ++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence            4555555555555555555555555555555543 4433

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.87  E-value=4.9e-06  Score=94.63  Aligned_cols=124  Identities=23%  Similarity=0.241  Sum_probs=82.5

Q ss_pred             cccEEEEEeCCCCC--CCCC--CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCc
Q 003639          207 KECYAISLRGCSIH--ELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQ  282 (806)
Q Consensus       207 ~~lr~l~l~~~~~~--~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~  282 (806)
                      .++++|++++...-  .-+.  ..-+|.||+|.+.+-.....-  -...+.++++|+.||+++++++.+ ..+++|++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence            46888888775431  1111  234788999988875432211  123457888899999999888887 5788888999


Q ss_pred             EEEecCcCCCC---chhhcCCCccceEeccCCCCcccCh-------hccCCCcCCEEeccC
Q 003639          283 TLCLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPE-------ELGHLTKLRQLDLSN  333 (806)
Q Consensus       283 ~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~-------~i~~L~~L~~L~l~~  333 (806)
                      +|.+++=.+..   ...+.+|++|++||+|......-+.       .-..|++||.||.++
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            88888777665   5677888888888888764332221       112366666666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.85  E-value=2.1e-06  Score=85.08  Aligned_cols=94  Identities=14%  Similarity=0.091  Sum_probs=47.9

Q ss_pred             ccccceeeeeccccCCcchhcccc--cccccCCCcEEEeccCCCceEEecCCCCC--CCCCCCCcceEEecccccccccc
Q 003639          442 QGIKDVEYLCLEKLQDVKNVLFDL--DTEGFSQLKHLHVQNNPDFMCIVDSKERV--PLDDAFPILESLNLYNLIKLERI  517 (806)
Q Consensus       442 ~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~  517 (806)
                      ..+++|+.|+|.++.....-...+  ....+++|+.|.+.+|- ++.-  +...+  .....+|+|+.|.+.++.--.+-
T Consensus       210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~--Ga~a~~~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENE--GAIAFVDALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccc--cHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence            356677777777654433221111  11346777777777772 2220  00000  01234788888887775422111


Q ss_pred             c-ccccccCCCCCccEEEEecC
Q 003639          518 C-QDRLSVQSFNELKTIRVEHC  538 (806)
Q Consensus       518 ~-~~~~~~~~~~~L~~L~l~~c  538 (806)
                      . .........|.|++|++.+|
T Consensus       287 ~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  287 ALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             HHHHHHHHhcchhhHHhcCCcc
Confidence            0 00112234788999999884

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.79  E-value=1.3e-05  Score=91.28  Aligned_cols=104  Identities=25%  Similarity=0.274  Sum_probs=57.9

Q ss_pred             CCccEEEecCCCCcc-cccCCChhhhcCCCceEEEeecCCCcc--CCcccccccCCcEEEecCcCCCCchhhcCCCccce
Q 003639          229 PRLEFLHINPKDSLF-DINNPCNFFTGMRKLRVVDFTRMQLLL--LPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEI  305 (806)
Q Consensus       229 ~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~  305 (806)
                      .+||+|++.|..... ..  |..+...++.||.|.+++-.+..  +-.-..++++|+.||+++++++....+++|++||+
T Consensus       122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence            466777776654321 12  33444556666666666654432  22233456666666666666666666666666666


Q ss_pred             EeccCCCCcccC--hhccCCCcCCEEeccCC
Q 003639          306 LSFWGSGIVKLP--EELGHLTKLRQLDLSNC  334 (806)
Q Consensus       306 L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~  334 (806)
                      |.+.+-.+..-.  ..+-+|++|++||++.-
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            666554443211  23555666666666653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=9e-06  Score=78.72  Aligned_cols=82  Identities=26%  Similarity=0.355  Sum_probs=54.7

Q ss_pred             hcCCCceEEEeecCCCcc---CCcccccccCCcEEEecCcCCCC-chhh-cCCCccceEeccCCCCc--ccChhccCCCc
Q 003639          253 TGMRKLRVVDFTRMQLLL---LPSSIDLLVNLQTLCLVECMLDD-IAII-GKLKNLEILSFWGSGIV--KLPEELGHLTK  325 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~---lp~~l~~l~~L~~L~L~~~~l~~-~~~i-~~L~~L~~L~L~~~~l~--~lp~~i~~L~~  325 (806)
                      ....+++.|||.+|.|++   +-..+.++++|++|+++.|.+.. +.+. ..+++|++|-|.++.+.  ..-..+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            456777888888887765   33345677888888888887766 4544 46677888888777543  44444566666


Q ss_pred             CCEEeccCC
Q 003639          326 LRQLDLSNC  334 (806)
Q Consensus       326 L~~L~l~~~  334 (806)
                      ++.|+++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.76  E-value=1.8e-06  Score=97.31  Aligned_cols=120  Identities=18%  Similarity=0.152  Sum_probs=72.9

Q ss_pred             cccceeeeeccccCCcchh--cccccccccCCCcEEEeccC-CCceEEecCCCCCCCCCCCCcceEEecccccccccccc
Q 003639          443 GIKDVEYLCLEKLQDVKNV--LFDLDTEGFSQLKHLHVQNN-PDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ  519 (806)
Q Consensus       443 ~l~~L~~L~l~~~~~~~~~--~~~l~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  519 (806)
                      ..+.|+.|.+.+|..+.+.  ....  ...++|+.|++.++ .......  .........+++|+.|.+..+..+.+...
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSP--LLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccch--hHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            3677888888877766652  2222  56788888888773 2222110  00111333457778888887765544322


Q ss_pred             cccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccc
Q 003639          520 DRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNI  567 (806)
Q Consensus       520 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L  567 (806)
                      ... ...+++|+.|.+.+|..+++..-......+++|++|++++|..+
T Consensus       262 ~~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  262 SAL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            211 12377888888888877665544445567788888888888776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.68  E-value=1e-05  Score=80.36  Aligned_cols=181  Identities=18%  Similarity=0.153  Sum_probs=113.8

Q ss_pred             ccEEEEEeCCCCC--CCCC----CCCCCCccEEEecCCCCccccc-----------CCChhhhcCCCceEEEeecCCCcc
Q 003639          208 ECYAISLRGCSIH--ELPE----GLECPRLEFLHINPKDSLFDIN-----------NPCNFFTGMRKLRVVDFTRMQLLL  270 (806)
Q Consensus       208 ~lr~l~l~~~~~~--~l~~----~~~~~~Lr~L~l~~~~~~~~~~-----------~~~~~~~~l~~Lr~L~L~~~~i~~  270 (806)
                      .++.++|+.|.+.  .++.    ...+..|+.|.+.+|.. +..-           +-.....+-.+||++...+|.+..
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            5788888888762  2222    12477888888887642 1110           000112455678888888887765


Q ss_pred             CC-----cccccccCCcEEEecCcCCCC------chhhcCCCccceEeccCCCCc-----ccChhccCCCcCCEEeccCC
Q 003639          271 LP-----SSIDLLVNLQTLCLVECMLDD------IAIIGKLKNLEILSFWGSGIV-----KLPEELGHLTKLRQLDLSNC  334 (806)
Q Consensus       271 lp-----~~l~~l~~L~~L~L~~~~l~~------~~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~  334 (806)
                      -+     ..+...+.|+.+.++.|.+..      -..+..+++|+.|||..|.++     .+...+..+++|+.|++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            33     345667788888888887655      245678888888888888655     23444667778888888887


Q ss_pred             ccccccC-----hhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639          335 FKLKVIA-----PNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN  397 (806)
Q Consensus       335 ~~l~~~p-----~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  397 (806)
                      - ++.-.     ...-...++|++|.+.+|.+.       ..........+...+.|+.|++++|...
T Consensus       252 l-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt-------~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  252 L-LENEGAIAFVDALKESAPSLEVLELAGNEIT-------RDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             c-cccccHHHHHHHHhccCCCCceeccCcchhH-------HHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            5 43222     111234678888888888775       1222233344555777888888877653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=1.3e-05  Score=77.68  Aligned_cols=14  Identities=21%  Similarity=0.420  Sum_probs=9.8

Q ss_pred             ccCCCcEEEeccCC
Q 003639          469 GFSQLKHLHVQNNP  482 (806)
Q Consensus       469 ~~~~L~~L~l~~~~  482 (806)
                      -||++..+.+..|+
T Consensus       197 ~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGP  210 (418)
T ss_pred             hcccchheeeecCc
Confidence            37777777777665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.64  E-value=5.2e-06  Score=70.93  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=37.3

Q ss_pred             CCCceEEEeecCCCccCCccccc-ccCCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEecc
Q 003639          255 MRKLRVVDFTRMQLLLLPSSIDL-LVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLS  332 (806)
Q Consensus       255 l~~Lr~L~L~~~~i~~lp~~l~~-l~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  332 (806)
                      ..+|...+|++|.+.++|+.+.. .+.+.+|++.+|.+++ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|+..
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence            34444444444444444444322 2244444444444444 444444555555555544444444444444444444444


Q ss_pred             CC
Q 003639          333 NC  334 (806)
Q Consensus       333 ~~  334 (806)
                      ++
T Consensus       132 ~n  133 (177)
T KOG4579|consen  132 EN  133 (177)
T ss_pred             CC
Confidence            43

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.62  E-value=1.4e-06  Score=94.10  Aligned_cols=124  Identities=23%  Similarity=0.177  Sum_probs=86.7

Q ss_pred             cccEEEEEeCCCCCCCCCCCC-CCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEE
Q 003639          207 KECYAISLRGCSIHELPEGLE-CPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC  285 (806)
Q Consensus       207 ~~lr~l~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~  285 (806)
                      ..+...+.+.|.+..+..... ++.+++|+++.|. ..++    .++..+.+|++|||++|.+..+|..-..-.+|+.|+
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhh----HHHHhcccccccccccchhccccccchhhhhheeee
Confidence            346677777777765554433 5788888888874 3433    245788888888888888888775322222388888


Q ss_pred             ecCcCCCCchhhcCCCccceEeccCCCCcccCh--hccCCCcCCEEeccCCc
Q 003639          286 LVECMLDDIAIIGKLKNLEILSFWGSGIVKLPE--ELGHLTKLRQLDLSNCF  335 (806)
Q Consensus       286 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~  335 (806)
                      +++|.++....+.+|++|+.||+++|-+.....  -++.|..|+.|.+.||.
T Consensus       239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            888888887888888888888888885543221  25667778888888876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.36  E-value=0.00033  Score=64.46  Aligned_cols=81  Identities=22%  Similarity=0.370  Sum_probs=43.3

Q ss_pred             hcCCCceEEEeecCCCccCCcccc-cccCCcEEEecCcCCCC---chhhcCCCccceEeccCCCCcccCh----hccCCC
Q 003639          253 TGMRKLRVVDFTRMQLLLLPSSID-LLVNLQTLCLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPE----ELGHLT  324 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~  324 (806)
                      ..++.|.+|.+.+|.|+.+-+.+. .+++|.+|.|.+|++.+   ..-+..++.|++|.+-+|.++.-+.    -+.+++
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence            455555555555555555433332 23445555555555444   3444555566666666655543332    256667


Q ss_pred             cCCEEeccC
Q 003639          325 KLRQLDLSN  333 (806)
Q Consensus       325 ~L~~L~l~~  333 (806)
                      +|++||+.+
T Consensus       141 ~l~~LDF~k  149 (233)
T KOG1644|consen  141 SLRTLDFQK  149 (233)
T ss_pred             cceEeehhh
Confidence            777776655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.28  E-value=4.9e-05  Score=65.13  Aligned_cols=108  Identities=13%  Similarity=0.193  Sum_probs=80.0

Q ss_pred             cEEEEEeCCCCCCCCC----CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEE
Q 003639          209 CYAISLRGCSIHELPE----GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTL  284 (806)
Q Consensus       209 lr~l~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L  284 (806)
                      ...+++++|.+-++++    ......|...++++|. ..++  |..|-.+++.+..|++.+|.+.++|..+..++.||.|
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f--p~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF--PKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC--CHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            3445666666655543    3455667777888773 5556  7777677778888888888888888888888888888


Q ss_pred             EecCcCCCC-chhhcCCCccceEeccCCCCcccChh
Q 003639          285 CLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEE  319 (806)
Q Consensus       285 ~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~  319 (806)
                      +++.|++.. |..|..|.+|-+|+..++.+..+|..
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            888888776 88888888888888888877777764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.17  E-value=0.00056  Score=63.01  Aligned_cols=100  Identities=27%  Similarity=0.366  Sum_probs=41.4

Q ss_pred             cEEEecCcCCCCchhhcCCCccceEeccCCCCcccChhccC-CCcCCEEeccCCccccc---cChhhhhcCCCCCEEEee
Q 003639          282 QTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGH-LTKLRQLDLSNCFKLKV---IAPNVISRLVRLEELYMS  357 (806)
Q Consensus       282 ~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~-L~~L~~L~l~~~~~l~~---~p~~~l~~L~~L~~L~l~  357 (806)
                      ..+||+.|.+...+.+..+..|.+|.+++|+|+.+-..+.. +++|+.|.+.+|+ +..   +.+  +..++.|++|.+-
T Consensus        45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~Ltll  121 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEYLTLL  121 (233)
T ss_pred             ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccceeeec
Confidence            33444444433333344444444444444444444333332 2334444444433 221   222  4444555555554


Q ss_pred             cCcccccCCCCCchhhhccccccCCCCCCcEEEEE
Q 003639          358 NCFVEWDDEGPNSERINARLDELMHLPRLATLEVH  392 (806)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~  392 (806)
                      +|.+.        ....-..-.+.++++|+.|+..
T Consensus       122 ~Npv~--------~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  122 GNPVE--------HKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             CCchh--------cccCceeEEEEecCcceEeehh
Confidence            44332        0111223344555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.82  E-value=9.1e-05  Score=83.36  Aligned_cols=198  Identities=20%  Similarity=0.193  Sum_probs=119.8

Q ss_pred             CCCCccEEEEecCCCCCcccchhhhcccCcccEEEeecc-ccccchhcccCcccccccccccccccceEecCCCCCcccc
Q 003639          526 SFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINC-RNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSF  604 (806)
Q Consensus       526 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c-~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l  604 (806)
                      .++.|+.|.+..|..+....-.......+.|+.|++.+| .........      .......+++|+.|++++|..++..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~~~L~~l~l~~~~~isd~  259 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL------LLLLLSICRKLKSLDLSGCGLVTDI  259 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH------hhhhhhhcCCcCccchhhhhccCch
Confidence            478999999999988887432345678899999999884 222111100      0012335578888888888654332


Q ss_pred             ccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecce-eeeecCCCCCcccccccCCCccEEEEe
Q 003639          605 CCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKV-NIEKIWPNQLPVAMFLCFQNLTRLILR  683 (806)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~i~~~~~~~~~~~~l~~L~~L~l~  683 (806)
                      ..                                ......+++|+.|.+.+| .+++-   ++. .....+++|++|+|+
T Consensus       260 ~l--------------------------------~~l~~~c~~L~~L~l~~c~~lt~~---gl~-~i~~~~~~L~~L~l~  303 (482)
T KOG1947|consen  260 GL--------------------------------SALASRCPNLETLSLSNCSNLTDE---GLV-SIAERCPSLRELDLS  303 (482)
T ss_pred             hH--------------------------------HHHHhhCCCcceEccCCCCccchh---HHH-HHHHhcCcccEEeee
Confidence            11                                011223789999998888 44432   110 012467889999999


Q ss_pred             cCCCcceecchhhHhhhcccceEEEeccc---ccceeeccccccCCCCCcccc-cccccccccccccccccCCCCCcCCC
Q 003639          684 KCPKLKYIFSASMLGSFEHLQHLEIRHCK---GLQEIISKEGADDHVPPNFVF-LQVTTLILLGLPELKCLYPGMHTSEW  759 (806)
Q Consensus       684 ~C~~L~~l~~~~~~~~l~~L~~L~i~~C~---~L~~i~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~l  759 (806)
                      .|..++.-.......++++|+.|.+..+.   .++.........       .. -.+..+.+.+|++++.+..... . .
T Consensus       304 ~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~-------~~~d~~~~~~~~~~~~l~~~~l~~~-~-~  374 (482)
T KOG1947|consen  304 GCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT-------LTSDDLAELILRSCPKLTDLSLSYC-G-I  374 (482)
T ss_pred             cCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc-------cCchhHhHHHHhcCCCcchhhhhhh-h-c
Confidence            99988553223445667777776655543   455442111000       12 2688889999999988765421 1 2


Q ss_pred             CCcC-EEeEecCCCce
Q 003639          760 PALK-LLDVSACDQVT  774 (806)
Q Consensus       760 ~sL~-~L~i~~C~~L~  774 (806)
                      .... .+.+.+||+++
T Consensus       375 ~~~~~~~~l~gc~~l~  390 (482)
T KOG1947|consen  375 SDLGLELSLRGCPNLT  390 (482)
T ss_pred             cCcchHHHhcCCcccc
Confidence            3333 57778899883

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.70  E-value=0.0017  Score=62.55  Aligned_cols=82  Identities=22%  Similarity=0.222  Sum_probs=44.0

Q ss_pred             cCCCceEEEeecCCCcc-----CCcccccccCCcEEEecCcCC---CC--c-------hhhcCCCccceEeccCCCCc-c
Q 003639          254 GMRKLRVVDFTRMQLLL-----LPSSIDLLVNLQTLCLVECML---DD--I-------AIIGKLKNLEILSFWGSGIV-K  315 (806)
Q Consensus       254 ~l~~Lr~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~l---~~--~-------~~i~~L~~L~~L~L~~~~l~-~  315 (806)
                      -+..+..++||+|.|..     +...|.+-.+|++.+++.-..   .+  +       +.+-++++|+..+||.|.+. +
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            35566666666666543     334455556666666654321   11  1       33455666666666666333 2


Q ss_pred             cCh----hccCCCcCCEEeccCCc
Q 003639          316 LPE----ELGHLTKLRQLDLSNCF  335 (806)
Q Consensus       316 lp~----~i~~L~~L~~L~l~~~~  335 (806)
                      .|.    -|.+-+.|.||.+++|.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCC
Confidence            332    25555666666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.00012  Score=70.45  Aligned_cols=80  Identities=20%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             CCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCCchhhcCCCccceEeccCCCCcccCh--hccCCCcCCEEecc
Q 003639          255 MRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPE--ELGHLTKLRQLDLS  332 (806)
Q Consensus       255 l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~  332 (806)
                      +.+.+.|++-||++.++. ...+++.|++|.|+-|+|+....+..+++|+.|+|..|.|..+-+  -+.++++|+.|-+.
T Consensus        18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            445555666666655542 233556666666666666665556666666666666665554432  24455555555555


Q ss_pred             CCc
Q 003639          333 NCF  335 (806)
Q Consensus       333 ~~~  335 (806)
                      .|.
T Consensus        97 ENP   99 (388)
T KOG2123|consen   97 ENP   99 (388)
T ss_pred             cCC
Confidence            444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00028  Score=67.99  Aligned_cols=77  Identities=18%  Similarity=0.198  Sum_probs=38.4

Q ss_pred             CCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC---chhhcCCCccce
Q 003639          229 PRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD---IAIIGKLKNLEI  305 (806)
Q Consensus       229 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~---~~~i~~L~~L~~  305 (806)
                      .+.+.|++.|+. +.+|    ++..+|+.|.+|.|+-|.|+.+- .+..|++|+.|+|+.|.|.+   ..-+.++++|+.
T Consensus        19 ~~vkKLNcwg~~-L~DI----sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   19 ENVKKLNCWGCG-LDDI----SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHhhhhcccCCC-ccHH----HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            344455555542 2222    33455555555555555555542 34455555555555555544   333445555555


Q ss_pred             EeccCC
Q 003639          306 LSFWGS  311 (806)
Q Consensus       306 L~L~~~  311 (806)
                      |-|..|
T Consensus        93 LWL~EN   98 (388)
T KOG2123|consen   93 LWLDEN   98 (388)
T ss_pred             HhhccC
Confidence            555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.20  E-value=0.0017  Score=62.74  Aligned_cols=102  Identities=25%  Similarity=0.313  Sum_probs=52.1

Q ss_pred             hcCCCceEEEeecCCCccCCcccccccCCcEEEecCcC--CCC--chhhcCCCccceEeccCCCCcccC--hhccCCCcC
Q 003639          253 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECM--LDD--IAIIGKLKNLEILSFWGSGIVKLP--EELGHLTKL  326 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~--l~~--~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L  326 (806)
                      ..+..|..|++.+..++.+- .+..|++|++|.++.|.  +..  +....++++|++|++++|+|+-+.  ..+.++.+|
T Consensus        40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            44555555555555544421 23356677777777773  333  333344577777777777554211  124555666


Q ss_pred             CEEeccCCcccc--ccChhhhhcCCCCCEEE
Q 003639          327 RQLDLSNCFKLK--VIAPNVISRLVRLEELY  355 (806)
Q Consensus       327 ~~L~l~~~~~l~--~~p~~~l~~L~~L~~L~  355 (806)
                      ..|++.+|....  .--..++.-+++|.+|+
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            666666665221  11122344455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.01  E-value=0.0038  Score=60.35  Aligned_cols=103  Identities=20%  Similarity=0.250  Sum_probs=50.5

Q ss_pred             cccEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCCcEEE
Q 003639          207 KECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTLC  285 (806)
Q Consensus       207 ~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L~~L~  285 (806)
                      ..+.++++.+..+..+..+..+++|+.|.++.|..                         .+.. ++-....+++|++|+
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~-------------------------~~~~~l~vl~e~~P~l~~l~   97 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYR-------------------------RVSGGLEVLAEKAPNLKVLN   97 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcc-------------------------cccccceehhhhCCceeEEe
Confidence            34555555555555554444555555555555421                         2221 222233345555555


Q ss_pred             ecCcCCCC---chhhcCCCccceEeccCCCCcccCh----hccCCCcCCEEeccCC
Q 003639          286 LVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPE----ELGHLTKLRQLDLSNC  334 (806)
Q Consensus       286 L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~~  334 (806)
                      +++|++..   ...+.++.+|..|++..|..+.+-.    -+.-+++|.+|+-..+
T Consensus        98 ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen   98 LSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             ecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            55555433   2334455555566666654443321    2555677777765553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.85  E-value=0.0037  Score=35.74  Aligned_cols=21  Identities=29%  Similarity=0.621  Sum_probs=12.8

Q ss_pred             ccceEeccCCCCcccChhccC
Q 003639          302 NLEILSFWGSGIVKLPEELGH  322 (806)
Q Consensus       302 ~L~~L~L~~~~l~~lp~~i~~  322 (806)
                      +|++||+++|+++.+|.+|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.78  E-value=0.037  Score=49.20  Aligned_cols=117  Identities=15%  Similarity=0.286  Sum_probs=43.5

Q ss_pred             CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCc-ccccccCCcEEEecCcCCCC--chhhcCCC
Q 003639          225 GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLK  301 (806)
Q Consensus       225 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~--~~~i~~L~  301 (806)
                      +.++++|+.+.+..  ....+  ....|..+..|+.+.+.++ +..++. .+.++..|+.+.+.. .+..  ...+..++
T Consensus         8 F~~~~~l~~i~~~~--~~~~I--~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKI--GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE---TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECC--CeeEe--Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            34455566666553  23344  4445566666666666553 444332 345555566666644 2222  33445555


Q ss_pred             ccceEeccCCCCcccChh-ccCCCcCCEEeccCCccccccChhhhhcCCCC
Q 003639          302 NLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRL  351 (806)
Q Consensus       302 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L  351 (806)
                      +|+.+++..+ +..++.. +.+. +|+.+.+..  .+..++...+.+.++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            6666665443 4444332 4444 555555543  2444444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.87  E-value=0.0091  Score=34.13  Aligned_cols=19  Identities=32%  Similarity=0.487  Sum_probs=11.0

Q ss_pred             ceEEEeecCCCccCCcccc
Q 003639          258 LRVVDFTRMQLLLLPSSID  276 (806)
Q Consensus       258 Lr~L~L~~~~i~~lp~~l~  276 (806)
                      |++|++++|.++.+|++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5566666666655555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.79  E-value=0.099  Score=46.38  Aligned_cols=105  Identities=16%  Similarity=0.294  Sum_probs=63.4

Q ss_pred             CChhhhcCCCceEEEeecCCCccCC-cccccccCCcEEEecCcCCCC--chhhcCCCccceEeccCCCCcccChh-ccCC
Q 003639          248 PCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPEE-LGHL  323 (806)
Q Consensus       248 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L  323 (806)
                      +...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..  ...+.++++|+.+.+.. .+..++.. +..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            556678899999999875 566655 45778888999999875 655  45678888899999976 55555543 6678


Q ss_pred             CcCCEEeccCCccccccChhhhhcCCCCCEEEeec
Q 003639          324 TKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN  358 (806)
Q Consensus       324 ~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~  358 (806)
                      ++|+.+.+..+  +..++...+.+. +|+.+.+..
T Consensus        81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            89998888652  667776667776 888887654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.26  E-value=0.0075  Score=55.89  Aligned_cols=15  Identities=27%  Similarity=0.600  Sum_probs=6.6

Q ss_pred             cccceEEEecccccc
Q 003639          701 EHLQHLEIRHCKGLQ  715 (806)
Q Consensus       701 ~~L~~L~i~~C~~L~  715 (806)
                      ++|+.|+|++|+.++
T Consensus       151 ~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRIT  165 (221)
T ss_pred             cchheeeccCCCeec
Confidence            344444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=0.0099  Score=55.13  Aligned_cols=67  Identities=19%  Similarity=0.306  Sum_probs=44.1

Q ss_pred             CCCcceEEecccccccccccccccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccc
Q 003639          499 AFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNI  567 (806)
Q Consensus       499 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L  567 (806)
                      .++.++.|.+.+|.++.+|+...... ..|+|+.|+|++|+++++- ....+..+++|+.|.+.+.+.+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence            35566677777777777766544332 5778888888888887765 2245566777777777765544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.09  E-value=0.06  Score=52.29  Aligned_cols=109  Identities=18%  Similarity=0.170  Sum_probs=55.7

Q ss_pred             CCCCCCccEEEecCCCCcccccCCC---hhhhcCCCceEEEeecCCCccCCc--------------ccccccCCcEEEec
Q 003639          225 GLECPRLEFLHINPKDSLFDINNPC---NFFTGMRKLRVVDFTRMQLLLLPS--------------SIDLLVNLQTLCLV  287 (806)
Q Consensus       225 ~~~~~~Lr~L~l~~~~~~~~~~~~~---~~~~~l~~Lr~L~L~~~~i~~lp~--------------~l~~l~~L~~L~L~  287 (806)
                      ..+|++|+..+++.|..-...  |.   .++++-..|.+|.+++|.+..+..              -..+-+.|++....
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~--~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEF--PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HhcCCcceeeeccccccCccc--chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            456777777777777544333  32   345666777777777776543211              11234456666666


Q ss_pred             CcCCCC-chh-----hcCCCccceEeccCCCCcc-----c-ChhccCCCcCCEEeccCCc
Q 003639          288 ECMLDD-IAI-----IGKLKNLEILSFWGSGIVK-----L-PEELGHLTKLRQLDLSNCF  335 (806)
Q Consensus       288 ~~~l~~-~~~-----i~~L~~L~~L~L~~~~l~~-----l-p~~i~~L~~L~~L~l~~~~  335 (806)
                      .|++.. +..     +..-.+|.++.+..|.|..     + -.++..+++|+.|++..|.
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence            665544 211     1112355555555554431     0 1123344555555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.65  E-value=0.044  Score=28.95  Aligned_cols=16  Identities=31%  Similarity=0.534  Sum_probs=6.3

Q ss_pred             ccceEeccCCCCcccC
Q 003639          302 NLEILSFWGSGIVKLP  317 (806)
Q Consensus       302 ~L~~L~L~~~~l~~lp  317 (806)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555444

...

>PRK04841 transcriptional regulator MalT; Provisional

Probab=92.44  E-value=1.6  Score=53.45  Aligned_cols=150  Identities=17%  Similarity=0.255  Sum_probs=94.7

Q ss_pred             eeeCC----CCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHccCChhHHHHHHHHhcCCChhHHHHHHHHhcCCCCCC
Q 003639            6 NFSID----ILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVN   81 (806)
Q Consensus         6 ~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~~~~~W~~~l~~~~~~~~~~   81 (806)
                      ..+++    +++.+|+.++|....+..- .   .+...+|.+.|+|.|+++..++..++..... -......+.     .
T Consensus       176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~-~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~-----~  245 (903)
T PRK04841        176 LLEIGSQQLAFDHQEAQQFFDQRLSSPI-E---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLA-----G  245 (903)
T ss_pred             ceecCHHhCCCCHHHHHHHHHhccCCCC-C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhc-----C
Confidence            45566    8999999999987664321 1   3456789999999999999998877544210 011111111     0


Q ss_pred             CCCCchhhHhHHHH-hhccCCchhHHHHHHHHhhcCCCCChhHHHHHhhhcccccccccHHHHHHHHHHHHHHHHhcccc
Q 003639           82 FEGVPAEAYSTIEL-SFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLL  160 (806)
Q Consensus        82 ~~~~~~~i~~~L~l-sY~~L~~~~lk~cfl~~s~fp~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~~L~~~~l~  160 (806)
                        ....++...+.- -|+.||++ .+.-+...|+++ .|+.+ +...-.  |       .++++    +.+++|.+++++
T Consensus       246 --~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~~~-l~~~l~--~-------~~~~~----~~L~~l~~~~l~  307 (903)
T PRK04841        246 --INASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-SMNDA-LIVRVT--G-------EENGQ----MRLEELERQGLF  307 (903)
T ss_pred             --CCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-cCCHH-HHHHHc--C-------CCcHH----HHHHHHHHCCCe
Confidence              011234444333 37899998 799999999997 55533 222111  1       11122    348889999986


Q ss_pred             cc-cC-CCCceeecHHHHHHHHHHH
Q 003639          161 LE-GD-SNQELSMHDVIRDVAISIA  183 (806)
Q Consensus       161 ~~-~~-~~~~~~mHdli~~l~~~~~  183 (806)
                      .. .+ ....|+.|++++++.....
T Consensus       308 ~~~~~~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        308 IQRMDDSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             eEeecCCCCEEehhHHHHHHHHHHH
Confidence            53 33 3346889999999988765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.36  E-value=0.0069  Score=57.16  Aligned_cols=83  Identities=11%  Similarity=0.097  Sum_probs=58.5

Q ss_pred             hcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEec
Q 003639          253 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL  331 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  331 (806)
                      ..++.-++||++.|.+..+-..++.+..|..|+++.+.+.. |.+++.+..++++++..|+.+.+|.++++++++++++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            55666677777777666666666667777777777766666 77777777777777777777777777777777777777


Q ss_pred             cCCc
Q 003639          332 SNCF  335 (806)
Q Consensus       332 ~~~~  335 (806)
                      .++.
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            6654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.61  E-value=0.096  Score=27.67  Aligned_cols=15  Identities=33%  Similarity=0.527  Sum_probs=5.5

Q ss_pred             CceEEEeecCCCccC
Q 003639          257 KLRVVDFTRMQLLLL  271 (806)
Q Consensus       257 ~Lr~L~L~~~~i~~l  271 (806)
                      +||.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.56  E-value=0.0072  Score=57.00  Aligned_cols=90  Identities=12%  Similarity=-0.006  Sum_probs=76.6

Q ss_pred             cCC-cccccccCCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhc
Q 003639          270 LLP-SSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISR  347 (806)
Q Consensus       270 ~lp-~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~  347 (806)
                      .+| ..+.....-.+||++.+.+.. -..++.++.|..|+++.+.+..+|..++.+..+++++++.|. ....|.+ .++
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k  109 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKK  109 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccc
Confidence            344 356678889999999998777 677888999999999999999999999999999999988765 8889987 899


Q ss_pred             CCCCCEEEeecCcc
Q 003639          348 LVRLEELYMSNCFV  361 (806)
Q Consensus       348 L~~L~~L~l~~~~~  361 (806)
                      ++.+++++..++.+
T Consensus       110 ~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEF  123 (326)
T ss_pred             cCCcchhhhccCcc
Confidence            99999998877654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.02  E-value=0.32  Score=29.01  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=11.9

Q ss_pred             CCccceEeccCCCCcccChh
Q 003639          300 LKNLEILSFWGSGIVKLPEE  319 (806)
Q Consensus       300 L~~L~~L~L~~~~l~~lp~~  319 (806)
                      |++|++|+|++|.++.+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            34566666666666666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.02  E-value=0.32  Score=29.01  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=11.9

Q ss_pred             CCccceEeccCCCCcccChh
Q 003639          300 LKNLEILSFWGSGIVKLPEE  319 (806)
Q Consensus       300 L~~L~~L~L~~~~l~~lp~~  319 (806)
                      |++|++|+|++|.++.+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            34566666666666666654

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=85.06  E-value=2.9  Score=44.05  Aligned_cols=135  Identities=12%  Similarity=0.117  Sum_probs=75.1

Q ss_pred             cceeeCCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHccCChhHHHHHHHHhcCCChhHHHHHHHHhcCCCCCCCC
Q 003639            4 QKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFE   83 (806)
Q Consensus         4 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~~~~~W~~~l~~~~~~~~~~~~   83 (806)
                      +..+++++++.+|..+++.+.++... ..--.+....|++.|+|.|=.+..+...+     ..|..+.+. .   ... .
T Consensus       172 ~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~~-~---~I~-~  240 (328)
T PRK00080        172 GIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKGD-G---VIT-K  240 (328)
T ss_pred             CeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcCC-C---CCC-H
Confidence            34689999999999999999983211 11223678899999999994443333322     223222100 0   111 1


Q ss_pred             CCchhhHhHHHHhhccCCchhHHHHHH-HHhhcC-CCCChhHHHHHhhhcccccccccHHHHHHHHHHHHH-HHHhcccc
Q 003639           84 GVPAEAYSTIELSFKNLKGEQLKKIFM-LCSLLG-NSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVH-ELRDSCLL  160 (806)
Q Consensus        84 ~~~~~i~~~L~lsY~~L~~~~lk~cfl-~~s~fp-~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~-~L~~~~l~  160 (806)
                      ....+.+..+...|..|+..+ +.-+. ....|+ ..+..+.+...+     -.   +.+.+++.    ++ .|++.+|+
T Consensus       241 ~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~a~~l-----g~---~~~~~~~~----~e~~Li~~~li  307 (328)
T PRK00080        241 EIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGGPVGLDTLAAAL-----GE---ERDTIEDV----YEPYLIQQGFI  307 (328)
T ss_pred             HHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCCceeHHHHHHHH-----CC---CcchHHHH----hhHHHHHcCCc
Confidence            111234556667778888764 44443 556666 455555543332     11   11223322    44 57888888


Q ss_pred             cc
Q 003639          161 LE  162 (806)
Q Consensus       161 ~~  162 (806)
                      +.
T Consensus       308 ~~  309 (328)
T PRK00080        308 QR  309 (328)
T ss_pred             cc
Confidence            63

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.98  E-value=0.66  Score=27.67  Aligned_cols=16  Identities=44%  Similarity=0.858  Sum_probs=12.5

Q ss_pred             CCCcCEEeEecCCCce
Q 003639          759 WPALKLLDVSACDQVT  774 (806)
Q Consensus       759 l~sL~~L~i~~C~~L~  774 (806)
                      |++|++|++++|++++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4678888888888774

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.11  E-value=0.94  Score=26.92  Aligned_cols=19  Identities=37%  Similarity=0.522  Sum_probs=11.9

Q ss_pred             CCceEEEeecCCCccCCcc
Q 003639          256 RKLRVVDFTRMQLLLLPSS  274 (806)
Q Consensus       256 ~~Lr~L~L~~~~i~~lp~~  274 (806)
                      .+|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.11  E-value=0.94  Score=26.92  Aligned_cols=19  Identities=37%  Similarity=0.522  Sum_probs=11.9

Q ss_pred             CCceEEEeecCCCccCCcc
Q 003639          256 RKLRVVDFTRMQLLLLPSS  274 (806)
Q Consensus       256 ~~Lr~L~L~~~~i~~lp~~  274 (806)
                      .+|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666653

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=82.00  E-value=4.6  Score=42.07  Aligned_cols=135  Identities=14%  Similarity=0.109  Sum_probs=73.3

Q ss_pred             cceeeCCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHccCChhHHHHHHHHhcCCChhHHHHHHHHhcCCCCCCCC
Q 003639            4 QKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFE   83 (806)
Q Consensus         4 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~~~~~W~~~l~~~~~~~~~~~~   83 (806)
                      ...+++++++.+|..+++.+.|+.... .--.+....|++.|+|.|-.+..++..+       |..+. ... ..... .
T Consensus       151 ~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~-~~~it-~  219 (305)
T TIGR00635       151 GIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRG-QKIIN-R  219 (305)
T ss_pred             ceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcC-CCCcC-H
Confidence            346899999999999999999832111 1124567889999999995554444432       22111 000 00010 0


Q ss_pred             CCchhhHhHHHHhhccCCchhHHHHHH-HHhhcC-CCCChhHHHHHhhhcccccccccHHHHHHHHHHHHH-HHHhcccc
Q 003639           84 GVPAEAYSTIELSFKNLKGEQLKKIFM-LCSLLG-NSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVH-ELRDSCLL  160 (806)
Q Consensus        84 ~~~~~i~~~L~lsY~~L~~~~lk~cfl-~~s~fp-~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~-~L~~~~l~  160 (806)
                      ....+++..+...|..++.++ +.-+. ..+.+. ..+..+++....   |.     +...++.    .++ .|++++++
T Consensus       220 ~~v~~~l~~l~~~~~~l~~~~-~~~L~al~~~~~~~~~~~~~ia~~l---g~-----~~~~~~~----~~e~~Li~~~li  286 (305)
T TIGR00635       220 DIALKALEMLMIDELGLDEID-RKLLSVLIEQFQGGPVGLKTLAAAL---GE-----DADTIED----VYEPYLLQIGFL  286 (305)
T ss_pred             HHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhCCCcccHHHHHHHh---CC-----CcchHHH----hhhHHHHHcCCc
Confidence            111223334566788888874 44333 455565 444444433332   11     1122332    256 58999999


Q ss_pred             cc
Q 003639          161 LE  162 (806)
Q Consensus       161 ~~  162 (806)
                      +.
T Consensus       287 ~~  288 (305)
T TIGR00635       287 QR  288 (305)
T ss_pred             cc
Confidence            63

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	806
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	5e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 96.6 bits (240), Expect = 5e-21
 Identities = 24/202 (11%), Positives = 59/202 (29%), Gaps = 14/202 (6%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
             + +   +  L  +E +   +          + +    +  +   G P  L    ++  
Sbjct: 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCE 341

Query: 61  NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTI----ELSFKNLKGEQLKKIFMLCSLL- 115
            K+  +      +L     V  E +   +Y ++    +   + L  E  +       ++ 
Sbjct: 342 PKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDE-DRSALAFAVVMP 400

Query: 116 -GNSICTSYLFQCCMGLGILQKVNKLED-ARNKLYALVHELRDSCLLLEGDSNQELS--M 171
            G  I                +  +L+D   ++L      L     LL G     L+  +
Sbjct: 401 PGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRL----KRLSKRGALLSGKRMPVLTFKI 456

Query: 172 HDVIRDVAISIACREQHAVLVR 193
             +I      +   +  A  + 
Sbjct: 457 DHIIHMFLKHVVDAQTIANGIS 478

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 13/163 (7%)

Query: 206 LKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTR 265
            +  Y                  P++E        +  D+               ++   
Sbjct: 35  WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDAT----QPGRVALELRS 90

Query: 266 MQLLLLPSSIDLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIVKLPEELGHLT 324
           + L   P     L +LQ + +    L ++   + +   LE L+   + +  LP  +  L 
Sbjct: 91  VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLN 150

Query: 325 KLRQLDLSNCFKLKVI--------APNVISRLVRLEELYMSNC 359
           +LR+L +  C +L  +        A      LV L+ L +   
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 4e-16
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 20/149 (13%)

Query: 213 SLRGCSIHELPEGL-ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLL 271
           +L    +  LP  +    RL  L I     L ++  P                       
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTEL--PEPL---------------ASTDA 175

Query: 272 PSSIDLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLD 330
                 LVNLQ+L L    +  + A I  L+NL+ L    S +  L   + HL KL +LD
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235

Query: 331 LSNCFKLKVIAPNVISRLVRLEELYMSNC 359
           L  C  L+   P +      L+ L + +C
Sbjct: 236 LRGCTALRNY-PPIFGGRAPLKRLILKDC 263

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.4 bits (200), Expect = 6e-16
 Identities = 94/603 (15%), Positives = 179/603 (29%), Gaps = 205/603 (33%)

Query: 10  DILNE----EEAWRLFKLVAD----------DHVENREFKSTATEVAQACKGLPIALTTI 55
            I+          RLF  +            + V    +K   + +    +  P  +T +
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRM 111

Query: 56  ARALRNK-----------SVP------EWKSALQELRMPSEVNFEGVPAEAYSTIELSFK 98
               R++           +V       + + AL ELR    V  +G              
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-------------- 157

Query: 99  NLKGEQLKKIFMLC--SLLGNSICTSYLFQCCMGLGI----LQKVNKLEDARNKLYALVH 152
            + G            + +   +C SY  QC M   I    L+  N  E     L  L++
Sbjct: 158 -VLG---------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 153 ELR-DSCLLLEGDSNQELSMHD-------------------VIRDV-------AISIACR 185
           ++  +     +  SN +L +H                    V+ +V       A +++C+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 186 EQHAVLV--RNEDVWEWPDDIALKECYAISLR-------------------GCSIHELPE 224
               +L+  R + V    D ++      ISL                     C   +LP 
Sbjct: 268 ----ILLTTRFKQV---TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 225 GLECPRLEFLHINP-KDSLF---DINNPC--NFFTGMRKLRVVDFTRMQLLLLPSSIDLL 278
                  E L  NP + S+      +     + +      + V+  ++      + I+  
Sbjct: 321 -------EVLTTNPRRLSIIAESIRDGLATWDNW------KHVNCDKLT-----TIIESS 362

Query: 279 VNLQTLCLVECMLDDIAIIGK-----LKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSN 333
           +N+        M D +++           L ++  W   I      +  + KL +  L  
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVV--VNKLHKYSLVE 418

Query: 334 C-------------FKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDE- 379
                          +LKV   N  +    + + Y      + DD  P        LD+ 
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP------YLDQY 472

Query: 380 -LMHLPR-LATLEVHVKNDNVLPE-----GFFARKLERLSWALFA--------------- 417
              H+   L  +E H +   +         F  +K+   S A  A               
Sbjct: 473 FYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 418 --IDDHETMRTLKLK--LNSVSICSKKLQGIKDVEYLCLEK--LQDVKNVLFDLDTEGFS 471
             I D++      +   L+ +    + L  I   +Y  L +  L      +F+   E   
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENL--ICS-KYTDLLRIALMAEDEAIFE---EAHK 585

Query: 472 QLK 474
           Q++
Sbjct: 586 QVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 95/606 (15%), Positives = 167/606 (27%), Gaps = 177/606 (29%)

Query: 218 SIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDL 277
            I             +  I  +D L++ N     F      R+  + +++  LL      
Sbjct: 97  PIKTEQRQPSMMTRMY--IEQRDRLYNDNQV---FAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 278 LVNLQTL------CLVECMLDDIAIIGKLKNLEILSFWGS-GIVKLPEELGHLTKLRQLD 330
            V +  +       +   +     +  K+   +I  FW +      PE +  L  L++L 
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KI--FWLNLKNCNSPETV--LEMLQKL- 205

Query: 331 LSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLAT-L 389
               +++    PN  SR      + +                I A L  L+        L
Sbjct: 206 ---LYQID---PNWTSRSDHSSNIKL------------RIHSIQAELRRLLKSKPYENCL 247

Query: 390 EV--HVKNDNVLPEGF--------------FARKLERLSWALFAIDDHETMRTLKLKLNS 433
            V  +V+N       F                  L   +    ++D H    T       
Sbjct: 248 LVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD---EV 303

Query: 434 VSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKER 493
            S+  K L   +                           L    +  NP  + I+     
Sbjct: 304 KSLLLKYL-DCR------------------------PQDLPREVLTTNPRRLSIIAES-- 336

Query: 494 VPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCL 553
             + D     ++    N  KL  I +  L+V    E +    +  D+LS +F  SA   +
Sbjct: 337 --IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR----KMFDRLS-VFPPSAH--I 387

Query: 554 PRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQ 613
           P      ++       +   D      D   +    +  L   SL         V+K  +
Sbjct: 388 P----TILL------SLIWFDVIKS--DVMVV----VNKLHKYSL---------VEKQPK 422

Query: 614 AQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLE---MNKVNIEKIWPNQLPVAM 670
                          E  + I S     KV L N   L    ++  NI K +        
Sbjct: 423 ---------------ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-------- 459

Query: 671 FLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPP- 729
                +L    L      +Y +S        H+ H    H K ++               
Sbjct: 460 --DSDDLIPPYLD-----QYFYS--------HIGH----HLKNIE----HPERMTLFRMV 496

Query: 730 --NFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD---SELFSFF 784
             +F FL+   +             G   +    LK      CD    ++   + +  F 
Sbjct: 497 FLDFRFLEQ-KIRHDSTA---WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 785 KSSEED 790
              EE+
Sbjct: 553 PKIEEN 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.7 bits (181), Expect = 1e-13
 Identities = 83/489 (16%), Positives = 152/489 (31%), Gaps = 86/489 (17%)

Query: 248 PCNFFTGMRKLRVVDFTRMQL---LLLPSSIDLLVNLQTLCLVECMLDDIAI---IGKLK 301
             + F G+  L  +      L   +L       L  L  L L +  +  + +    GKL 
Sbjct: 89  HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148

Query: 302 NLEILSFWGSGIVKLPEE-LGHLT--KLRQLDLSNCFKLKVIAPNVIS-----RLVRLEE 353
           +L+ + F  + I  + E  L  L    L    L+       ++ +        R + LE 
Sbjct: 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208

Query: 354 LYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSW 413
           L +S      D  G  S  I+                  +   +++  GF    ++    
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKS-----------QAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 414 ALFAIDDHETMRTLKLKLNS-VSICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGF 470
             FA     ++R L L      S+ S+  + +KD++ L L   K+  + +  F     G 
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF----YGL 313

Query: 471 SQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNEL 530
             L+ L++  N                     L S N Y L K+       + +   N +
Sbjct: 314 DNLQVLNLSYNL-----------------LGELYSSNFYGLPKVA-----YIDL-QKNHI 350

Query: 531 KTIRVEHCDQLSNIFLLS----AAKCLPRLERIAVIN--CRNIQEIFAVDGEYDAIDHQR 584
             I+ +    L  +  L     A   +  +  I  I      +  +  ++   + I    
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410

Query: 585 IEFGQLRTLC-LGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKV 643
                L  L  L  +P L                     N  SS            +E  
Sbjct: 411 NRLENLDILYFLLRVPHLQILILN--------------QNRFSSCSG-----DQTPSE-- 449

Query: 644 ALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHL 703
              +LE L + +  ++  W  +L   +F    +L  L L     L  +    +      L
Sbjct: 450 -NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSL-PPGVFSHLTAL 506

Query: 704 QHLEIRHCK 712
           + L +   +
Sbjct: 507 RGLSLNSNR 515

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 62/348 (17%), Positives = 112/348 (32%), Gaps = 50/348 (14%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLL 269
           ++L    + EL        P++ ++ +  K+ +  I      F  + KL+ +D     L 
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQ-KNHIAII--QDQTFKFLEKLQTLDLRDNAL- 374

Query: 270 LLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQL 329
              ++I  + ++  + L    L  +  I    NL  LS      + +   L  +  L+ L
Sbjct: 375 ---TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 330 DLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATL 389
            L+             S    LE+L++    ++   E      +         L  L  L
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV------FEGLSHLQVL 485

Query: 390 EVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKL---KLNSVSICSKKLQGIKD 446
            ++    N LP G F   L  L             R L L   +L  +S           
Sbjct: 486 YLNHNYLNSLPPGVF-SHLTAL-------------RGLSLNSNRLTVLSHNDLPAN---- 527

Query: 447 VEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESL 506
                LE L   +N L   + + F  L  L + +N  F+C  +          F    + 
Sbjct: 528 -----LEILDISRNQLLAPNPDVFVSLSVLDITHNK-FICECELS-------TFINWLNH 574

Query: 507 NLYNLIKL-ERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCL 553
               +      I        S   L ++  E CD+   +  L  +  +
Sbjct: 575 TNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFI 622

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 74/529 (13%), Positives = 154/529 (29%), Gaps = 88/529 (16%)

Query: 300 LKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
           L   E L    + I  +       L +L+ L+L + +    I       L  L  L + +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKN---DNVLPEGFFA--RKLERLS- 412
             + +         ++        L  L  L ++      D VL +G+F   + L RL  
Sbjct: 83  SKIYF---------LHPDA--FQGLFHLFELRLY-FCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 413 --WALFAIDDHETMRTLK----LKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLD 466
               + ++  H +   L     +  +S  I       ++ ++   L       N L+   
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 467 TEGFSQ---------LKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERI 517
           +  + +         L+ L V  N   + I  +            L   +          
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 518 CQDRLSVQSFNELKTIRVEHCDQLSN--IFLLSAA--KCLPRLERIAVINCRNIQEIFAV 573
                   +F  L    V H D LS+  +F L++   + L  L+ + +     I +I   
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLD-LSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKI--- 305

Query: 574 DGEYDAIDHQR------IEFGQLRTLCLGSLPELTSFCCGVKK----NRQAQGMHETCSN 623
               +A           + +  L  L   +   L      V            + +    
Sbjct: 306 --ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK----VAYIDLQKNHIAIIQDQTFK 359

Query: 624 EISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILR 683
            +  L+  LD+          + ++  + ++   +  +    L             + L 
Sbjct: 360 FLEKLQ-TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL---------TANLIHLS 409

Query: 684 KCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLG 743
           +  +L+ +     L    HLQ L +   +                 +    +  +L  L 
Sbjct: 410 EN-RLENLDILYFLLRVPHLQILILNQNR-----------FSSCSGDQTPSENPSLEQLF 457

Query: 744 LPELKCLYPGMHTSEW------PALKLLDVSACDQVTVFDSELFSFFKS 786
           L E            W        L++L ++    +      +FS   +
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTA 505

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 59/400 (14%), Positives = 112/400 (28%), Gaps = 81/400 (20%)

Query: 322 HLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELM 381
            L    +L LS    ++ +  +    L +L+ L + +              +    +   
Sbjct: 22  VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGS----------QYTPLTIDKEAFR 70

Query: 382 HLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKL---KLNSVSICS 438
           +LP L  L++       L    F + L  L               L+L    L+   +  
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAF-QGLFHL-------------FELRLYFCGLSDAVLKD 116

Query: 439 KKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGF----SQLKHLHVQNNPDFMCIVDSKERV 494
              + +K +  L L      KN +  L         + LK +   +N     I    E  
Sbjct: 117 GYFRNLKALTRLDLS-----KNQIRSLYLHPSFGKLNSLKSIDFSSNQ----IFLVCEHE 167

Query: 495 PLDDAFPILESLNL-YNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSN-IFLLSAAKC 552
                   L   +L  N +            +  N  + + +E  D   N   +      
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSR---VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224

Query: 553 LPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNR 612
              + +    +      I      +  I     +      L   S+  L           
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKD--PDQNTFAGLARSSVRHLD---------- 272

Query: 613 QAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFL 672
                       + S      ++S +F     L +L+VL +    I KI         F 
Sbjct: 273 -------LSHGFVFS------LNSRVFE---TLKDLKVLNLAYNKINKIADE-----AFY 311

Query: 673 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCK 712
              NL  L L     L  ++S S       + +++++   
Sbjct: 312 GLDNLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKNH 349

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.3 bits (175), Expect = 6e-13
 Identities = 88/507 (17%), Positives = 170/507 (33%), Gaps = 87/507 (17%)

Query: 260 VVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWGSGIVKLP 317
                 +    +P   +L  + + L L    L  +          L++L      I  + 
Sbjct: 11  TYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 318 EE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINAR 376
           +     L+ L  L L+    ++ +A    S L  L++L      +   +  P        
Sbjct: 69  DGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP-------- 119

Query: 377 LDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSV-S 435
              + HL  L  L V            +   L  L               L L  N + S
Sbjct: 120 ---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-------------EHLDLSSNKIQS 163

Query: 436 ICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFS--QLKHLHVQNNPDFMCIVDSKER 493
           I    L+ +  +  L L  L    N +  +    F   +L  L ++NN D + +      
Sbjct: 164 IYCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV------ 216

Query: 494 VPLDDAFPILESLNLYNLIKLERICQDRL---SVQSFNELKTIRVEHCD----QLSNIFL 546
             +      L  L ++ L+  E   +  L      +   L  + +E             +
Sbjct: 217 --MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 547 LSAAKCLPRLERIAVINCRNIQEI--FAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSF 604
           +    CL  +   ++++   I+ +  F+ +  +  ++    +FGQ  TL L SL  LT  
Sbjct: 275 IDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-- 331

Query: 605 CCGVKKNRQAQGMHETCSNEISSLEDKLDIS-------SALFNEKVALSNLEVLEMNKVN 657
                     +G +     ++ SLE  LD+S                 ++L+ L+++   
Sbjct: 332 ------FTSNKGGNAFSEVDLPSLE-FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 658 IEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEI 717
           +  +  N      FL  + L  L  +    LK +   S+  S  +L +L+I H    +  
Sbjct: 385 VITMSSN------FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVA 436

Query: 718 ISKEGADDHVPPNFVFLQVTTLILLGL 744
                       N +F  +++L +L +
Sbjct: 437 -----------FNGIFNGLSSLEVLKM 452

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 100/523 (19%), Positives = 174/523 (33%), Gaps = 100/523 (19%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHI--NPKDSLFDINNPCNFFTGMRKLRVVDFTRMQ 267
           + L  C I  + +G       L  L +  NP  SL         F+G+  L+ +      
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETN 111

Query: 268 LLLLPS-SIDLLVNLQTLCLVECMLDDI---AIIGKLKNLEILSFWGSGIVKLPEE-LGH 322
           L  L +  I  L  L+ L +   ++           L NLE L    + I  +    L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 323 LTKLR----QLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLD 378
           L ++      LDLS    +  I P     + RL +L + N F   +            + 
Sbjct: 172 LHQMPLLNLSLDLSLN-PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVM-------KTCIQ 222

Query: 379 ELMHLPRLATLEVHVKNDN---VLPEGFFA--RKLERLSWAL----FAIDDHETMRTLKL 429
            L  L     +    +N+       +        L    + L    + +DD   +     
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 430 KLNSVSICSKKLQGIKDVEYLC-LEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIV 488
            ++S S+ S  ++ +KD  Y    + L+ V        T     LK L   +N       
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK----GG 338

Query: 489 DSKERVPLDDAFPILESLNL-YNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLL 547
           ++   V L    P LE L+L  N +  +  C    S      LK + +     +  +   
Sbjct: 339 NAFSEVDL----PSLEFLDLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFN-GVITMS-- 389

Query: 548 SAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCG 607
           S    L +LE +   +   ++++     E+      R     L  L +            
Sbjct: 390 SNFLGLEQLEHLDFQHSN-LKQMS----EFSVFLSLR----NLIYLDISH---------- 430

Query: 608 VKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLP 667
                                 + +      FN    LS+LEVL+M   + ++ +   + 
Sbjct: 431 ---------------THTRVAFNGI------FNG---LSSLEVLKMAGNSFQENFLPDI- 465

Query: 668 VAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRH 710
              F   +NLT L L +C +L+ + S +   S   LQ L +  
Sbjct: 466 ---FTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMAS 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.2 bits (167), Expect = 5e-12
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 5/160 (3%)

Query: 204 IALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDF 263
           + LK    ++            ++ P LEFL ++ ++ L           G   L+ +D 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS-RNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 264 TRMQLLLLPSSIDLLVNLQTLCLVECMLDDI---AIIGKLKNLEILSFWGSGIVKLPEE- 319
           +   ++ + S+   L  L+ L      L  +   ++   L+NL  L    +         
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 320 LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
              L+ L  L ++     +   P++ + L  L  L +S C
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 48/288 (16%), Positives = 95/288 (32%), Gaps = 50/288 (17%)

Query: 206 LKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFT--GMRKLRVVDF 263
           L    + SL   +I  + +       + L +         N     F    ++ L+ + F
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELV--------NCKFGQFPTLKLKSLKRLTF 332

Query: 264 TRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAI----IGKLKNLEILSFWGSGIVKLPEE 319
           T  +     S +DL  +L+ L L    L              +L+ L    +G++ +   
Sbjct: 333 TSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 320 LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDE 379
              L +L  LD  +    ++   +V   L  L  L +S+          ++      +  
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT---------HTRVAFNGI-- 440

Query: 380 LMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKL---KLNSVSI 436
              L  L  L++     N   E F       L            +  L L   +L  +S 
Sbjct: 441 FNGLSSLEVLKMA---GNSFQENFLPDIFTELRN----------LTFLDLSQCQLEQLS- 486

Query: 437 CSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNP 482
                  +  ++ L +   +L+ V + +FD      + L+ + +  NP
Sbjct: 487 -PTAFNSLSSLQVLNMASNQLKSVPDGIFD----RLTSLQKIWLHTNP 529

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 7e-13
 Identities = 79/517 (15%), Positives = 156/517 (30%), Gaps = 102/517 (19%)

Query: 213 SLRGCSIHELPEGLECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFTRMQ 267
             R  S   +P GL    ++ L ++         N               L+V+     +
Sbjct: 11  DGRSRSFTSIPSGL-TAAMKSLDLS--------FNKITYIGHGDLRACANLQVLILKSSR 61

Query: 268 LLLLPSSI-DLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWGSGIVKLPE--ELGH 322
           +  +       L +L+ L L +  L  +  +  G L +L+ L+  G+    L       +
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 323 LTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNS-ERINARLDELM 381
           LT L+ L + N      I     + L  L EL +             S     +    L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA----------LSLRNYQS--QSLK 169

Query: 382 HLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKL 441
            +  +  L +H+     L E F               D   ++R L+L+  +        
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFA--------------DILSSVRYLELRDTN-------- 207

Query: 442 QGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFP 501
                     L + Q     + ++ +          V  +  F  ++     +       
Sbjct: 208 ----------LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 502 ILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAA-KCLPRLERIA 560
             +   L  L        D +S     E  TIR  H  Q    + LS     L +++RI 
Sbjct: 258 FDD-CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 561 VINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTL-----CLGSLPELTSFCCGVKKNRQAQ 615
           V N + +  +           H       L  L      +       S C G   + Q  
Sbjct: 317 VENSK-VFLV-----PCSFSQH----LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 616 GMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQ 675
            +     N + S++     +  +      L NL  L++++     +  +          +
Sbjct: 367 VLS---QNHLRSMQK----TGEILLT---LKNLTSLDISRNTFHPMPDS------CQWPE 410

Query: 676 NLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCK 712
            +  L L     ++ + +       + L+ L++ +  
Sbjct: 411 KMRFLNLSST-GIRVVKT----CIPQTLEVLDVSNNN 442

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 7e-09
 Identities = 50/291 (17%), Positives = 97/291 (33%), Gaps = 86/291 (29%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHI--NPKDSLFDINNPCNFFTGMRKLRVVDFTRMQ 267
           + +    +      +     +++ + +  +    +     PC+F   ++ L  +D +   
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV-----PCSFSQHLKSLEFLDLSENL 345

Query: 268 L----LLLPSSIDLLVNLQTLCLVECMLDDIAIIG----KLKNLEILSFWGSGIVKLPEE 319
           +    L   +      +LQTL L +  L  +   G     LKNL  L    +    +P+ 
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405

Query: 320 LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDE 379
                K+R L+LS+   ++V+   +      LE L +SN                  LD 
Sbjct: 406 CQWPEKMRFLNLSST-GIRVVKTCI---PQTLEVLDVSNN----------------NLDS 445

Query: 380 L-MHLPRLATLEVHVKNDN---VLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVS 435
             + LPRL  L +   + N    LP+      L  +                 +  N   
Sbjct: 446 FSLFLPRLQELYI---SRNKLKTLPDASLFPVLLVMK----------------ISRN--- 483

Query: 436 ICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMC 486
                             +L+ V + +FD      + L+ + +  NP + C
Sbjct: 484 ------------------QLKSVPDGIFD----RLTSLQKIWLHTNP-WDC 511

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 22/232 (9%)

Query: 252 FTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGS 311
            T + ++  +   R+ +  +   ++ L NL  +      L DI  +  L  L  +    +
Sbjct: 42  QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100

Query: 312 GIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSE 371
            I  +   L +LT L  L L N  ++  I P  +  L  L  L +S+             
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSN------------ 144

Query: 372 RINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKL 431
            I+  +  L  L  L  L    +  ++ P       LERL  +   + D   +  L   L
Sbjct: 145 TIS-DISALSGLTSLQQLSFGNQVTDLKPLANL-TTLERLDISSNKVSDISVLAKLT-NL 201

Query: 432 NSVSICSKKLQGIKDVEYL-CLEKLQDVKNVLFDLDT-EGFSQLKHLHVQNN 481
            S+   + ++  I  +  L  L++L    N L D+ T    + L  L + NN
Sbjct: 202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 9e-09
 Identities = 85/444 (19%), Positives = 148/444 (33%), Gaps = 123/444 (27%)

Query: 273 SSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLS 332
            +   L       L +  + D      L  +  L     GI  + + + +L  L Q++ S
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFS 76

Query: 333 NCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVH 392
           N  +L  I P  +  L +L ++ M+N             +I   +  L +L  L  L + 
Sbjct: 77  NN-QLTDITP--LKNLTKLVDILMNNN------------QIA-DITPLANLTNLTGLTL- 119

Query: 393 VKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYL-C 451
              +N                    I D + ++ L   LN + + S  +  I  +  L  
Sbjct: 120 --FNN-------------------QITDIDPLKNLT-NLNRLELSSNTISDISALSGLTS 157

Query: 452 LEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESL-NLYN 510
           L++L     V         + L+ L + +N                     +  +  L  
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNK--------------------VSDISVLAK 197

Query: 511 LIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVI-NCRNIQE 569
           L  LE      L   + N++  I       L+N+  LS      +L+ I  + +  N+ +
Sbjct: 198 LTNLE-----SLIA-TNNQISDI--TPLGILTNLDELSLNGN--QLKDIGTLASLTNLTD 247

Query: 570 IFAVDGEYDAIDHQRIEFGQLRTLC-LGSLPELTSFCCGVKKNRQAQGMHETCSNEISSL 628
           +              +   Q+  L  L  L +LT    G              +N+IS++
Sbjct: 248 LD-------------LANNQISNLAPLSGLTKLTELKLG--------------ANQISNI 280

Query: 629 EDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKL 688
                  S L      L+ L  LE+N+  +E I P           +NLT L L     +
Sbjct: 281 -------SPLAG----LTALTNLELNENQLEDISP-------ISNLKNLTYLTLYFN-NI 321

Query: 689 KYIFSASMLGSFEHLQHLEIRHCK 712
             I   S + S   LQ L   + K
Sbjct: 322 SDI---SPVSSLTKLQRLFFYNNK 342

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 8/147 (5%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLL 271
           + L    + ++        L +L +   +++ DI+      + + KL+ + F   ++  +
Sbjct: 292 LELNENQLEDISPISNLKNLTYLTLY-FNNISDISP----VSSLTKLQRLFFYNNKVSDV 346

Query: 272 PSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL 331
            S +  L N+  L      + D+  +  L  +  L          P        +     
Sbjct: 347 SS-LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405

Query: 332 SNCFKLKVIAPNVISRLVRLEELYMSN 358
           +    L  IAP  IS      E  ++ 
Sbjct: 406 NVTGAL--IAPATISDGGSYTEPDITW 430

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 13/165 (7%)

Query: 206 LKECYAISLRGCS-IHELPEGL-ECPRLEFLHI------NPKDSLFDINNPCNFFTGMRK 257
           LK+   + L  C  + +LP+ L + P L+ L+I      +      D     +      K
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 258 LRVVDFTRMQLLLLPSSIDL--LVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVK 315
           +++       L   P+S  L  +V L  L  V   +  +   G    L  L    + I +
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE 609

Query: 316 LPEELG-HLTKLRQLDLSNCFKLKVIAPNV-ISRLVRLEELYMSN 358
           +PE+      ++  L  S+  KLK I        +  +  +  S 
Sbjct: 610 IPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSY 653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 8e-11
 Identities = 37/304 (12%), Positives = 85/304 (27%), Gaps = 51/304 (16%)

Query: 212 ISLRGCSIHELPEGLE---CPRLEFLHINPKDSLFDINNP---CNFFTGMRKLRVVDFTR 265
             +   ++ E P         +L  L           +N       F    KL  +    
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCV--------HNKVRHLEAFGTNVKLTDLKLDY 604

Query: 266 MQLLLLPSSI-DLLVNLQTLCLVECMLDDI---AIIGKLKNLEILSFWGSGIVKLPEELG 321
            Q+  +P         ++ L      L  I        +  +  + F  + I      + 
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 322 ------HLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINA 375
                        + LS   +++     + +    +  + +SN  +           +  
Sbjct: 665 CSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMT----SIPENSLKP 719

Query: 376 RLDELMHLPRLATLEVHVKNDN---VLPEGFFARKLERLSWALF-----------AIDDH 421
           +     +   L T+++     N    L + F A  L  LS  +               + 
Sbjct: 720 KDGNYKNTYLLTTIDLR---FNKLTSLSDDFRATTLPYLSN-MDVSYNCFSSFPTQPLNS 775

Query: 422 ETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDV---KNVLFDLDTEGFSQLKHLHV 478
             ++   ++    +  ++ L+            L  +    N +  +D +   QL  L +
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDI 834

Query: 479 QNNP 482
            +NP
Sbjct: 835 ADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 4e-07
 Identities = 57/443 (12%), Positives = 134/443 (30%), Gaps = 100/443 (22%)

Query: 319 ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLD 378
           +L +  ++  L L+     K   P+ I +L  L+ L              +SE ++ RL 
Sbjct: 318 DLDNNGRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGT----------HSETVSGRLF 366

Query: 379 ELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICS 438
               L    + E               +   R+ +    +D  + +    L  ++++   
Sbjct: 367 GDEELTPDMSEE--------------RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412

Query: 439 KKLQGIKDVEYLCLEKLQ--DVKNVLFDLDTE--GFSQLKHLHVQNNPDFMCIVDSKERV 494
            +++ IK    + L+  Q  ++ N +  +       ++L+ ++  N+P            
Sbjct: 413 -EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP------------ 459

Query: 495 PLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLP 554
                  I       N    ++   + LS  +  +L  + + +C  ++ +        L 
Sbjct: 460 --FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-----PDFLY 512

Query: 555 RLERIAVINCR--NIQEIFAVDGEYDAIDHQRIEFGQLRTL--------------CLGSL 598
            L  +  +N           +  ++  +        +++                 L  +
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 599 PELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNI 658
            +L    C                N++  L        A          L  L+++   I
Sbjct: 573 VKLGLLDCV--------------HNKVRHL-------EAFGT----NVKLTDLKLDYNQI 607

Query: 659 EKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEII 718
           E+I     P         +  L      KLKYI +     S   +  ++  + K +    
Sbjct: 608 EEI-----PEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNK-IGSEG 660

Query: 719 SKEGADDHVPPNFVFLQVTTLIL 741
                      ++  +  +T+ L
Sbjct: 661 RNISCS---MDDYKGINASTVTL 680

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 77/604 (12%), Positives = 163/604 (26%), Gaps = 156/604 (25%)

Query: 246 NNPCNFFTGMRKLRVVDFTRMQLL-LLPSSIDLLVNLQTLCLVECMLDDIA--------- 295
           + P        ++  +          +P +I  L  L+ L                    
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 296 ------------------IIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCF-- 335
                              +   + L +       I + P E+  + K  ++ L +    
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIG 431

Query: 336 ----KLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARL--------DELMHL 383
               ++  I    I RL +L+ +Y +N    +D+   + E  N+              +L
Sbjct: 432 NLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 384 PRLATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHETMRTLKL---KLNSVSICSK 439
             L  +E++   +   LP+  +   L  L             ++L +   +  S +    
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLY--DLPEL-------------QSLNIACNRGISAAQLKA 535

Query: 440 KLQGIKDVEYLCLEKLQDV---KNVLFDLDTEGF----SQLKHLHVQNNPDFMCIVDSKE 492
               + D +     K+Q      N L +           +L  L   +N           
Sbjct: 536 DWTRLAD-DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK---------- 584

Query: 493 RVPLDDAFPILESLN-LYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAK 551
                     +  L      +KL       L +  +N+++ I  + C     +  L  + 
Sbjct: 585 ----------VRHLEAFGTNVKLT-----DLKL-DYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 552 C----LPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCG 607
                +P        +   +  +           + +I           S     S    
Sbjct: 629 NKLKYIP--NIFNAKSVYVMGSVD--------FSYNKIG----------SEGRNISCSMD 668

Query: 608 VKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLP 667
             K   A  +  +  NEI         +          S +  + ++   +  I  N L 
Sbjct: 669 DYKGINASTVTLS-YNEIQKF-----PTELFAT----GSPISTIILSNNLMTSIPENSLK 718

Query: 668 V--AMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADD 725
                +     LT + LR   KL  +       +  +L ++++ +               
Sbjct: 719 PKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSF-------- 768

Query: 726 HVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPA-------LKLLDVSACDQVTVFDS 778
             P     L  + L   G+   +         +WP        L  L + +   +   D 
Sbjct: 769 --PTQ--PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDE 823

Query: 779 ELFS 782
           +L  
Sbjct: 824 KLTP 827

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 4e-12
 Identities = 30/147 (20%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLL 271
           + + G  +  +        LE+L++N  + + DI+      + + KL  +     ++  +
Sbjct: 49  LVVAGEKVASIQGIEYLTNLEYLNLN-GNQITDISP----LSNLVKLTNLYIGTNKITDI 103

Query: 272 PSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL 331
            + +  L NL+ L L E  + DI+ +  L  +  L+   +  +     L ++T L  L +
Sbjct: 104 SA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 332 SNCFKLKVIAPNVISRLVRLEELYMSN 358
           +   K+K + P  I+ L  L  L ++ 
Sbjct: 163 TES-KVKDVTP--IANLTDLYSLSLNY 186

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 3e-11
 Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 22/231 (9%)

Query: 254 GMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGI 313
            + +       +  +  + +  + L ++  L +    +  I  I  L NLE L+  G+ I
Sbjct: 20  DLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI 78

Query: 314 VKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERI 373
             +   L +L KL  L +    K+  I+   +  L  L ELY++   +            
Sbjct: 79  TDIS-PLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNIS----------- 123

Query: 374 NARLDELMHLPRLATLEVHVKNDNVLPEGFFA-RKLERLSWALFAIDDHETMRTLKLKLN 432
              +  L +L ++ +L +   ++            L  L+     + D   +  L   L 
Sbjct: 124 --DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLT-DLY 180

Query: 433 SVSICSKKLQGIKDVEYLC-LEKLQDVKNVLFDLDT-EGFSQLKHLHVQNN 481
           S+S+   +++ I  +  L  L       N + D+      ++L  L + NN
Sbjct: 181 SLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 75/455 (16%), Positives = 143/455 (31%), Gaps = 123/455 (27%)

Query: 267 QLLLLPSSI------DLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEEL 320
            L  LP+ I        L       L +  + D+    +L+++  L   G  +  +   +
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ-GI 62

Query: 321 GHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDEL 380
            +LT L  L+L+   ++  I+P  +S LV+L  LY+    +               +  L
Sbjct: 63  EYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKIT-------------DISAL 106

Query: 381 MHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKK 440
            +L  L  L +   N++          +  +S     + +   M +L L  N        
Sbjct: 107 QNLTNLRELYL---NED---------NISDIS----PLANLTKMYSLNLGANHNLSDLSP 150

Query: 441 LQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDD 498
           L  +  + YL +   K++DV  +         + L  L +  N                 
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPI------ANLTDLYSLSLNYN----------------- 187

Query: 499 AFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLER 558
              I +   L +L  L        +    N++  I       ++ +  L       ++  
Sbjct: 188 --QIEDISPLASLTSLH-----YFTA-YVNQITDI--TPVANMTRLNSLKIGNN--KITD 235

Query: 559 IAVI-NCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGM 617
           ++ + N   +  +         I   +I    +    +  L +L     G          
Sbjct: 236 LSPLANLSQLTWLE--------IGTNQIS--DINA--VKDLTKLKMLNVG---------- 273

Query: 618 HETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNL 677
               SN+IS +       S L N    LS L  L +N   +         + +     NL
Sbjct: 274 ----SNQISDI-------SVLNN----LSQLNSLFLNNNQLGN-----EDMEVIGGLTNL 313

Query: 678 TRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCK 712
           T L L +      I     L S   +   +  +  
Sbjct: 314 TTLFLSQNH----ITDIRPLASLSKMDSADFANQV 344

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 67.9 bits (166), Expect = 6e-12
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 12  LNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSAL 71
           L +E+   +  L    +++  +    A  + + CKG P+ ++ I   LR+     W+  L
Sbjct: 286 LGKEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN-RWEYYL 342

Query: 72  QELRMPSEVNFEGVPAEAYSTI----ELSFKNLKGEQLKKIFMLCSLL--GNSICTSYLF 125
           ++L+           +  Y  +     +S + L+ E +K  +   S+L     + T  L 
Sbjct: 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLC 401

Query: 126 QCCMGLGILQKVNKLEDARNKLYALVHELRDSCLLLEGDSNQELS--MHDVIRDVAISIA 183
                          E+  + L     E  +  LL    + +     +HD+  D      
Sbjct: 402 ILWDMET--------EEVEDIL----QEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449

Query: 184 CRE 186
           C +
Sbjct: 450 CSQ 452

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 9e-12
 Identities = 81/525 (15%), Positives = 174/525 (33%), Gaps = 111/525 (21%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFT 264
           + +   +I +L   L  + P L+ L++         +N         F     L  +   
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQ--------HNELSQLSDKTFAFCTNLTELHLM 105

Query: 265 RMQLL-LLPSSIDLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWGSGIVKLPEE-- 319
              +  +  +      NL TL L    L         +L+NL+ L    + I  L  E  
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 320 -LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLD 378
            +   + L++L+LS+  ++K  +P     + RL  L+++N              +  +L 
Sbjct: 166 DIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQ--------LGPSLTEKLC 216

Query: 379 ELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSV-SIC 437
             +    +  L +    ++         +L   S   F       +  L L  N++  + 
Sbjct: 217 LELANTSIRNLSLS---NS---------QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 438 SKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVP 495
           +     +  +EY  LE   +Q + +        G   +++L+++ +     I  +     
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSL----HGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 496 LDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPR 555
            D +F  L+ L   N+                N++  I+      L N+  LS +     
Sbjct: 321 DDFSFQWLKCLEHLNM--------------EDNDIPGIKSNMFTGLINLKYLSLSN---- 362

Query: 556 LERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELT-SFCCGVKKNRQA 614
                  +  +++ +                     +L    L  L  +         + 
Sbjct: 363 -------SFTSLRTL---------------TNETFVSLAHSPLHILNLTKN-------KI 393

Query: 615 QGMHETCSNEISSLEDKLDISSALFNEKVA------LSNLEVLEMNKVNIEKIWPNQLPV 668
             +     + +  LE  LD+      +++       L N+  + ++     ++  N    
Sbjct: 394 SKIESDAFSWLGHLE-VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS--- 449

Query: 669 AMFLCFQNLTRLILRKCPKLKYI-FSASMLGSFEHLQHLEIRHCK 712
             F    +L RL+LR+   LK +  S S      +L  L++ +  
Sbjct: 450 --FALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNN 491

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 9e-11
 Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 16/181 (8%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHI--NPKDSLFDINNPCNFFTGMRKLRVVDFTRMQL- 268
            SLR  + +E    L    L  L++  N    +  I +  + F+ +  L V+D    ++ 
Sbjct: 365 TSLRTLT-NETFVSLAHSPLHILNLTKN---KISKIES--DAFSWLGHLEVLDLGLNEIG 418

Query: 269 -LLLPSSIDLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWG---SGIVKLPEELGH 322
             L       L N+  + L       +       + +L+ L         +   P     
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 323 LTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMH 382
           L  L  LDLSN   +  I  +++  L +LE L + +  +    +  N       L  L H
Sbjct: 479 LRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 383 L 383
           L
Sbjct: 538 L 538

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 70/520 (13%), Positives = 146/520 (28%), Gaps = 121/520 (23%)

Query: 212 ISLRGCSIHELPEG----LECPRLEFLHI--NPKDSLFDINNPCNFFTGMRKLRVVDFTR 265
           + L    I  L            L+ L +  N              F  + +L  +    
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-----GCFHAIGRLFGLFLNN 204

Query: 266 MQL-LLLPSSIDL---LVNLQTLCLVECMLDDI--AIIGKLK--NLEILSFWGSGIVKL- 316
           +QL   L   + L     +++ L L    L          LK  NL +L    + +  + 
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 317 PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINAR 376
            +    L +L    L     ++ +  + +  L  +  L +   F +      +  +I+  
Sbjct: 265 NDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 377 LDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSI 436
                 L  L  L +   +   +    F   L  L             + L L  +  S+
Sbjct: 324 --SFQWLKCLEHLNMEDNDIPGIKSNMF-TGLINL-------------KYLSLSNSFTSL 367

Query: 437 CSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFS---QLKHLHVQNNPDFMCIVDSKER 493
            +   +    + +  L  L   KN +  ++++ FS    L+ L +  N            
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE----------- 416

Query: 494 VPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCL 553
             +       E   L N+ ++       LS   +N+   +       + ++  L      
Sbjct: 417 --IGQELTGQEWRGLENIFEI------YLS---YNKYLQLTRNSFALVPSLQRLM----- 460

Query: 554 PRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQ 613
                                     +    ++           L  LT           
Sbjct: 461 --------------------------LRRVALKNVDSSPSPFQPLRNLTILDLS------ 488

Query: 614 AQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLC 673
                   +N I+++         L      L  LE+L++   N+ ++W +  P      
Sbjct: 489 --------NNNIANI-----NDDMLEG----LEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 674 FQNLTRL---ILRKCPKLKYIFSASMLGSFEHLQHLEIRH 710
            + L+ L    L        I    +      L+ +++  
Sbjct: 532 LKGLSHLHILNLESN-GFDEI-PVEVFKDLFELKIIDLGL 569

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 7e-09
 Identities = 58/332 (17%), Positives = 107/332 (32%), Gaps = 58/332 (17%)

Query: 213 SLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVD--F 263
           S+   S+ ++ +        LE L++         +N       N FTG+  L+ +    
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNME--------DNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 264 TRMQLLLLPSSI---DLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWGSGIVKL-- 316
           +   L  L +          L  L L +  +  I       L +LE+L    + I +   
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 317 PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINAR 376
            +E   L  + ++ LS   K   +  N  + +  L+ L +    ++  D  P+       
Sbjct: 423 GQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP------ 475

Query: 377 LDELMHLPRLATLEVHVKNDNVLPEGFFAR------------KLERLSWALFAIDDHETM 424
                 L  L  L++   N   + +                  L RL            +
Sbjct: 476 ---FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 425 RTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVK---NVLFDLDTEGF---SQLKHLHV 478
           + L   L+ +++ S     I    +  L +L+ +    N L  L    F     LK L++
Sbjct: 533 KGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 479 QNNPDFMCIVDSKERVPLDDAFPILESLNLYN 510
           Q N                 AF  L  L++  
Sbjct: 592 QKNLITSVEKKV-----FGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 76/492 (15%), Positives = 149/492 (30%), Gaps = 118/492 (23%)

Query: 258 LRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLP 317
             V D + ++L  +P   DL  N+  L L    L  +                       
Sbjct: 6   HEVADCSHLKLTQVPD--DLPTNITVLNLTHNQLRRL---------------------PA 42

Query: 318 EELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNS-ERINAR 376
                 ++L  LD+     +  + P +  +L  L+ L + +          N   +++  
Sbjct: 43  ANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQH----------NELSQLSD- 90

Query: 377 LDELMHLPRLATLEVHVKNDN---VLPEGFFA--RKLER--LSW-ALFAIDDHE-----T 423
                    L  L +     N    +    F   + L    LS   L +           
Sbjct: 91  -KTFAFCTNLTELHL---MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 424 MRTLKLKLNSVSICSKKLQGI--KDVEYLCLEKLQDV---KNVLFDLDTEGF---SQLKH 475
           ++ L L  N       K+Q +  ++++      L+ +    N + +     F    +L  
Sbjct: 147 LQELLLSNN-------KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 476 LHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRV 535
           L + N      + +    + L+ A   + +L+L N  +L            +  L  + +
Sbjct: 200 LFLNNVQLGPSLTEK---LCLELANTSIRNLSLSN-SQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 536 EHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVD----------GEYDAIDHQRI 585
            +   L+ +    +   LP+LE   +    NIQ +F+                +   Q I
Sbjct: 256 SYN-NLNVV-GNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 586 EFGQLRTL---CLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEK 642
               L  +       L  L                     N+I  +      S+      
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNME--------------DNDIPGI-----KSNMFTG-- 351

Query: 643 VALSNLEVLEM--NKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSF 700
             L NL+ L +  +  ++  +        + L    L  L L K  K+  I S       
Sbjct: 352 --LINLKYLSLSNSFTSLRTLTNETF---VSLAHSPLHILNLTKN-KISKIES-DAFSWL 404

Query: 701 EHLQHLEIRHCK 712
            HL+ L++   +
Sbjct: 405 GHLEVLDLGLNE 416

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 3e-11
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 24/159 (15%)

Query: 206 LKECYAISLRGCS-IHELPEGL-ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDF 263
           LK+   + +  C  + +LP  L   P ++ +++            CN      +L+    
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA-----------CNRGISGEQLKD--- 293

Query: 264 TRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAI---IGKLKNLEILSFWGSGIVKLPEEL 320
                    +   +   +Q + +    L    +   + K+K L +L    + +       
Sbjct: 294 ----DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF 349

Query: 321 GHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
           G   KL  L+L+   ++  I  N      ++E L  ++ 
Sbjct: 350 GSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 4e-09
 Identities = 27/166 (16%), Positives = 49/166 (29%), Gaps = 26/166 (15%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHIN-------PKDSLFDINNPCNFFTGMRKLRVVD 262
           I+L    I + P+ L      L  +++        PK+SL D N     F     L  +D
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE---NFKNTYLLTSID 494

Query: 263 FTRMQLLLLPSSIDL--LVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIV----- 314
               +L  L        L  L  + L                 L+               
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 315 --KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
             + PE +     L QL + +   ++ +   +      +  L + +
Sbjct: 555 LREWPEGITLCPSLTQLQIGSN-DIRKVNEKI---TPNISVLDIKD 596

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 25/178 (14%)

Query: 252 FTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIAI---IGKLKNLEIL- 306
           F    KL  ++    Q+  +P++       ++ L      L  I        +  +  + 
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 307 -------SFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMS-N 358
                  S  G     L         +  ++LSN  ++      + S    L  + +  N
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN 467

Query: 359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN---VLPEGFFARKLERLSW 413
                         +    +   +   L ++++     N    L + F A  L  L  
Sbjct: 468 ML-----TEIPKNSLKDENENFKNTYLLTSIDLR---FNKLTKLSDDFRATTLPYLVG 517

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 34/179 (18%)

Query: 211 AISLRGCSIH-ELPEGL-ECPRLEFLHI--NPKDSLFDINNPCNFFTGMRKLRVVDFTRM 266
            +SL G      +P+ + +   LE L +  + +     +  P    +           R 
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI-SANMSDEQKQKMR- 142

Query: 267 QLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLK-------NLEILSFWGSGIVKLPEE 319
            +    + +D         L++  ++       +K           +    + I  + + 
Sbjct: 143 -MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 320 LGHLTKLRQLDLSN-------------------CFKLKVIAPNVISRLVRLEELYMSNC 359
           +  LTKLRQ  + N                     + K         L  L ++ + NC
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNC 259

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 51/264 (19%), Positives = 91/264 (34%), Gaps = 41/264 (15%)

Query: 248 PCNFFTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIA--IIGKLKNLE 304
             +       L+ +  T   +  +       L +L+ L L    L +++      L +L 
Sbjct: 68  SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127

Query: 305 ILSFWGSGIVKLPEE--LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE 362
            L+  G+    L E     HLTKL+ L + N      I     + L  LEEL +      
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS--- 184

Query: 363 WDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFAR-------KLERLSWAL 415
                 + +    +   L  +  ++ L +H+K   +L E F          +L       
Sbjct: 185 ------DLQSYEPKS--LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 416 FAI-----------DDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLE--KLQDVKNVL 462
           F                 T R +K+   S+    K L  I  +  L     +L+ V + +
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296

Query: 463 FDLDTEGFSQLKHLHVQNNPDFMC 486
           FD      + L+ + +  NP + C
Sbjct: 297 FD----RLTSLQKIWLHTNP-WDC 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 4e-11
 Identities = 83/520 (15%), Positives = 151/520 (29%), Gaps = 116/520 (22%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFT 264
           +      +  +          L FL +                  + F    +L  +  T
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLT--------RCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 265 RMQLLLLPSSI-DLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWGSGIVKLP-EEL 320
              L+ +  +       L+ L  ++  +  I    +   K LE L    + I  +   + 
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 321 GHLTKLRQLDLSNCFKLKVIAPNVISRLVRLE--ELYMSNCFVEWDDEGPNSERINARLD 378
               KL+ LD  N   +  ++   +S L +     L ++   +   + G     +   L+
Sbjct: 150 FPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 379 ELMHLPRLATLEVHVKNDNV--LPEGFFAR-KLERLSWALFAIDDHETMRTLKLKLNSVS 435
                  L  +   +KN  +  L  G F     E +S A+F      ++ ++ L+ +   
Sbjct: 209 -FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 436 -ICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKE 492
            I S        ++ L L    L ++ + L  L     S LK L +  N           
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGL-----STLKKLVLSAN----------- 311

Query: 493 RVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKC 552
                  F  L  ++  N   L  +    +     N  +                     
Sbjct: 312 ------KFENLCQISASNFPSLTHL---SI---KGNTKRL-------------------- 339

Query: 553 LPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNR 612
              L    + N  N++E+         + H  IE      L L +L  L S         
Sbjct: 340 --ELGTGCLENLENLRELD--------LSHDDIETSDCCNLQLRNLSHLQSL-------- 381

Query: 613 QAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFL 672
                     NE  SL+     + A          LE+L++    ++           F 
Sbjct: 382 ------NLSYNEPLSLK-----TEAFKE----CPQLELLDLAFTRLKVKDAQSP----FQ 422

Query: 673 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCK 712
               L  L L     L    S  +      LQHL ++   
Sbjct: 423 NLHLLKVLNLSHS-LLDIS-SEQLFDGLPALQHLNLQGNH 460

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 3e-10
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 250 NFFTGMRKLRVVDFTRMQL--LLLPSSIDLLVNLQTLCLVECMLDDIA--IIGKLKNLEI 305
             F    +L ++D    +L      S    L  L+ L L   +LD  +  +   L  L+ 
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 306 LSFWGSGIVKLPEE----LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
           L+  G+   K   +    L  L +L  L LS C  L  I  +  + L  +  + +S+
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 4e-09
 Identities = 56/297 (18%), Positives = 103/297 (34%), Gaps = 48/297 (16%)

Query: 213 SLRGCSIHELPE----GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQL 268
           +       ++      GL    +E +++  K   F+I++  N F     L+ +D T   L
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQ-KHYFFNISS--NTFHCFSGLQELDLTATHL 290

Query: 269 LLLPSSIDLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWGSGIVKL--PEELGHLT 324
             LPS +  L  L+ L L     +++         +L  LS  G+          L +L 
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 325 KLRQLDLS-NCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHL 383
            LR+LDLS +  +        +  L  L+ L +S               ++ + +     
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-----------LSLKTEAFKEC 399

Query: 384 PRLATLEV-HVKNDNVLPEGFFAR------------KLERLSWALFAIDDHETMRTLKLK 430
           P+L  L++   +      +  F               L+  S  LF  D    ++ L L+
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQ 457

Query: 431 LNSVS----ICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNN 481
            N         +  LQ +  +E L L    L  +    F         + H+ + +N
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT----SLKMMNHVDLSHN 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 31/177 (17%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHIN-------PKDSLF---------DINN------ 247
           ++L       L      ECP+LE L +           S F         ++++      
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 248 PCNFFTGMRKLRVVDFTRMQL----LLLPSSIDLLVNLQTLCLVECMLDDIA--IIGKLK 301
               F G+  L+ ++          +   +S+  L  L+ L L  C L  I       LK
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 302 NLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
            +  +    + +     E     K   L+L++   + +I P+++  L +   + +  
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 69/418 (16%), Positives = 117/418 (27%), Gaps = 104/418 (24%)

Query: 300 LKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
             + E L F  + +  +       L  L  LDL+ C ++  I  +      RL+ L ++ 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTA 90

Query: 359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAI 418
             + +  E             L     L  L       + +         + L       
Sbjct: 91  NPLIFMAETA-----------LSGPKALKHLFFIQTGISSIDFIPL-HNQKTL------- 131

Query: 419 DDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVK---NVLFDLDTEGFSQLKH 475
                  +L L  N        +  IK  +    EKL+ +    N +  L  E  S L+ 
Sbjct: 132 ------ESLYLGSN-------HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 476 -----LHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNEL 530
                L++  N             P      + +SLN      L  I +  L   +   L
Sbjct: 179 ATNLSLNLNGND-------IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG-LKNSTIQSL 230

Query: 531 KTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQL 590
                E  D       +    C   +E I  +       I       +        F  L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESI-NLQKHYFFNI-----SSNTFHC----FSGL 280

Query: 591 RTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEV 650
           + L L                          +  +S       + S L      LS L+ 
Sbjct: 281 QELDLT-------------------------ATHLSE------LPSGLVG----LSTLKK 305

Query: 651 LEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEI 708
           L ++    E      L       F +LT L ++   K   + +    G  E+L++L  
Sbjct: 306 LVLSANKFE-----NLCQISASNFPSLTHLSIKGNTKRLELGT----GCLENLENLRE 354

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 4e-11
 Identities = 78/484 (16%), Positives = 166/484 (34%), Gaps = 84/484 (17%)

Query: 252 FTGMRKLRVVDFTRMQLL-LLPSSIDLLVNLQTLCLVECMLDDIA--IIGKLKNLEILSF 308
           F    +L+V+D +R ++  +   +   L +L TL L    +  +A      L +L+ L  
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 309 WGSGIVKL-PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG 367
             + +  L    +GHL  L++L++++        P   S L  LE L +S+  +      
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI------ 161

Query: 368 PNSERINARLDELMHLP-RLATLEVHVKNDNVLPEGFFAR-KLERLSWALFAIDDHETMR 425
                    L  L  +P    +L++ +   N +  G F   +L +L+           +R
Sbjct: 162 --QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT-----------LR 208

Query: 426 TLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFM 485
                LN +  C + L G++ V  L L + ++  N L   D      L +L ++      
Sbjct: 209 NNFDSLNVMKTCIQGLAGLE-VHRLVLGEFRNEGN-LEKFDKSALEGLCNLTIEEFRLAY 266

Query: 486 CIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCD--QLSN 543
                 + + L +    + S +L ++  +ER+             + + + +C   Q   
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSV-TIERV----KDFSYNFGWQHLELVNCKFGQFPT 321

Query: 544 IFLLSAAKCLPRLER--------IAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCL 595
           + L S    L RL           + ++  +++ +         +    + F    +   
Sbjct: 322 LKLKS----LKRLTFTSNKGGNAFSEVDLPSLEFLD--------LSRNGLSFKGCCSQSD 369

Query: 596 GSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNK 655
                L                     N + ++                L  LE L+   
Sbjct: 370 FGTTSLKYLDLS--------------FNGVITMSSNFL----------GLEQLEHLDFQH 405

Query: 656 VNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQ 715
            N++++    +    FL  +NL  L +      +  F+  +      L+ L++      +
Sbjct: 406 SNLKQMSEFSV----FLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQE 459

Query: 716 EIIS 719
             + 
Sbjct: 460 NFLP 463

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 96/523 (18%), Positives = 167/523 (31%), Gaps = 100/523 (19%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFT 264
           + L  C I  + +G       L  L +          N         F+G+  L+ +   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILT--------GNPIQSLALGAFSGLSSLQKLVAV 108

Query: 265 RMQLL-LLPSSIDLLVNLQTLCLVECMLDDIAI---IGKLKNLEILSFWGSGIVKL-PEE 319
              L  L    I  L  L+ L +   ++    +      L NLE L    + I  +   +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 320 LGHLTKLR----QLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINA 375
           L  L ++      LDLS    +  I P     + RL +L + N F   +           
Sbjct: 169 LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEI-RLHKLTLRNNFDSLNVM-KTC----- 220

Query: 376 RLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVS 435
                  +  LA LEVH     VL E      LE+   +       E +  L ++   ++
Sbjct: 221 -------IQGLAGLEVH---RLVLGEFRNEGNLEKFDKSAL-----EGLCNLTIEEFRLA 265

Query: 436 ICSKKLQGIKDVEYLC--LEKLQDVKNVLFDLDTEGF-SQLKHLHVQNNPDFMCIVDSKE 492
                L  I D+      +     V   +  +    +    +HL + N            
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK---------- 315

Query: 493 RVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKC 552
                  F    +L L +L +L        +  S  +L ++      +    F    ++ 
Sbjct: 316 -------FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 553 LPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNR 612
                 +  ++      I         +    +   QL  L                 + 
Sbjct: 369 DFGTTSLKYLDLSFNGVI--------TMSSNFLGLEQLEHLDFQH-------------SN 407

Query: 613 QAQGMHETCSNEISSLEDKLDIS----SALFNEKVA-LSNLEVLEMNKVNIEKIWPNQLP 667
             Q    +    + +L   LDIS       FN     LS+LEVL+M   + ++ +   + 
Sbjct: 408 LKQMSEFSVFLSLRNLI-YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 465

Query: 668 VAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRH 710
              F   +NLT L L +C +L+ + S +   S   LQ L + H
Sbjct: 466 ---FTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 46/288 (15%), Positives = 85/288 (29%), Gaps = 60/288 (20%)

Query: 202 DDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVV 261
             + LK    ++            ++ P LEFL ++ ++ L           G   L+ +
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS-RNGLSFKGCCSQSDFGTTSLKYL 378

Query: 262 DFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDI---AIIGKLKNLEILSFWGSGIVKL-P 317
           D +   ++ + S+   L  L+ L      L  +   ++   L+NL  L    +       
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 318 EELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARL 377
                L+ L  L ++     +   P++ + L  L  L +S C +E               
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----------- 487

Query: 378 DELMHLPRLATLEVHVKNDN---VLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSV 434
                L  L  L +   + N    L    + + L  L             + L   LN  
Sbjct: 488 TAFNSLSSLQVLNM---SHNNFFSLDTFPY-KCLNSL-------------QVLDYSLN-- 528

Query: 435 SICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNP 482
                 +                 K  L        S L  L++  N 
Sbjct: 529 -----HIMTS-------------KKQELQHF----PSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 50/276 (18%), Positives = 85/276 (30%), Gaps = 49/276 (17%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTG--MRKLRVVDFTRMQLL 269
            SL   +I  + +       + L +         N     F    ++ L+ + FT  +  
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELV--------NCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 270 LLPSSIDLLVNLQTLCLVECMLDDIAII----GKLKNLEILSFWGSGIVKLPEELGHLTK 325
              S +DL  +L+ L L    L              +L+ L    +G++ +      L +
Sbjct: 339 NAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 326 LRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPR 385
           L  LD  +    ++   +V   L  L  L +S+        G               L  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-----------IFNGLSS 446

Query: 386 LATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIK 445
           L  L++     N   E F       L            +  L L          +L+ + 
Sbjct: 447 LEVLKMA---GNSFQENFLPDIFTELR----------NLTFLDLSQC-------QLEQLS 486

Query: 446 DVEYLCLEKLQDVK---NVLFDLDTEGFSQLKHLHV 478
              +  L  LQ +    N  F LDT  +  L  L V
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 75/447 (16%), Positives = 121/447 (27%), Gaps = 123/447 (27%)

Query: 270 LLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQL 329
               S + L  L +L      + D+  I KL  L  L    + I  L   L   T L  L
Sbjct: 33  TDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYL 90

Query: 330 DLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATL 389
              +  KL  +    ++ L +L  L      +   D                  P L  L
Sbjct: 91  ACDSN-KLTNLD---VTPLTKLTYLNCDTNKLTKLDVS--------------QNPLLTYL 132

Query: 390 EVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEY 449
                  N          L  +  +               +L  +     K     DV  
Sbjct: 133 NC---ARN---------TLTEIDVSHN------------TQLTELDCHLNKKITKLDVTP 168

Query: 450 L-CLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNL 508
              L  L    N + +LD      L  L+   N                     +  L+L
Sbjct: 169 QTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN--------------------ITKLDL 208

Query: 509 YNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQ 568
              I+L       L   S N+L  I V    QL+             L  + V     + 
Sbjct: 209 NQNIQLT-----FLDC-SSNKLTEIDVTPLTQLTYFDCSVN-----PLTELDVSTLSKLT 257

Query: 569 EIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSL 628
            +  +                L  + L    +L  F                       +
Sbjct: 258 TLHCIQ-------------TDLLEIDLTHNTQLIYFQA----------------EGCRKI 288

Query: 629 EDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQN--LTRLILRKCP 686
           + +LD++          + L +L+     I ++  +Q P  ++L   N  LT L +    
Sbjct: 289 K-ELDVTH--------NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNT 339

Query: 687 KLKYIF-------SASMLGSFEHLQHL 706
           KLK +          S +G    L + 
Sbjct: 340 KLKSLSCVNAHIQDFSSVGKIPALNNN 366

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 6e-11
 Identities = 51/260 (19%), Positives = 83/260 (31%), Gaps = 53/260 (20%)

Query: 228 CPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV 287
                  ++  K S+ D          +  +  +      +  +   I  L N+  L L 
Sbjct: 20  FAETIKDNLK-KKSVTDAVT----QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLN 73

Query: 288 ECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISR 347
              L DI  +  LKNL  L    + I  L   L  L KL+ L L +   +  I    +  
Sbjct: 74  GNKLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHN-GISDING--LVH 129

Query: 348 LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARK 407
           L +LE LY+ N             +I   +  L  L +L TL +    DN         +
Sbjct: 130 LPQLESLYLGNN------------KIT-DITVLSRLTKLDTLSL---EDN---------Q 164

Query: 408 LERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYL-CLEKLQDV---KNVLF 463
           +  +      +     ++ L L  N           I D+  L  L+ L  +        
Sbjct: 165 ISDIV----PLAGLTKLQNLYLSKN----------HISDLRALAGLKNLDVLELFSQECL 210

Query: 464 DLDTEGFSQLKHLHVQNNPD 483
           +      S L   +   N D
Sbjct: 211 NKPINHQSNLVVPNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 30/175 (17%), Positives = 71/175 (40%), Gaps = 18/175 (10%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLL 271
           + L G  + ++        L +L ++ ++ + D+++       ++KL+ +      +  +
Sbjct: 70  LFLNGNKLTDIKPLTNLKNLGWLFLD-ENKIKDLSS----LKDLKKLKSLSLEHNGISDI 124

Query: 272 PSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL 331
            + +  L  L++L L    + DI ++ +L  L+ LS   + I  +   L  LTKL+ L L
Sbjct: 125 -NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYL 182

Query: 332 SNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRL 386
           S    +  +    ++ L  L+ L + +             +       L+    +
Sbjct: 183 SKN-HISDLRA--LAGLKNLDVLELFSQ--------ECLNKPINHQSNLVVPNTV 226

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 6e-11
 Identities = 50/283 (17%), Positives = 104/283 (36%), Gaps = 45/283 (15%)

Query: 214 LRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLL 271
           LR   +  +P G+      L  L I+ ++ +  + +    F  +  L+ ++     L+ +
Sbjct: 87  LRSNRLKLIPLGVFTGLSNLTKLDIS-ENKIVILLD--YMFQDLYNLKSLEVGDNDLVYI 143

Query: 272 PSSI-DLLVNLQTLCLVECMLDDIA--IIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLR 327
                  L +L+ L L +C L  I    +  L  L +L      I  + +     L +L+
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 328 QLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLA 387
            L++S+   L  + PN     + L  L +++C         N   +      + HL  L 
Sbjct: 204 VLEISHWPYLDTMTPN-CLYGLNLTSLSITHC---------NLTAVPYLA--VRHLVYLR 251

Query: 388 TLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSV-SICSKKLQGIK 445
            L +   N  + +       +L RL             + ++L    +  +     +G+ 
Sbjct: 252 FLNLS-YNPISTIEGSML-HELLRL-------------QEIQLVGGQLAVVEPYAFRGLN 296

Query: 446 DVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMC 486
            +  L +   +L  ++  +F         L+ L + +NP   C
Sbjct: 297 YLRVLNVSGNQLTTLEESVFH----SVGNLETLILDSNP-LAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 66/414 (15%), Positives = 123/414 (29%), Gaps = 122/414 (29%)

Query: 302 NLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 360
              +L    + I  L ++       L +L+L+    +  + P   + L  L  L + +  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRS-- 89

Query: 361 VEWDDEGPNS-ERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAID 419
                   N  + I   +     L  L  L++      +L +  F + L  L        
Sbjct: 90  --------NRLKLIPLGV--FTGLSNLTKLDISENKIVILLDYMF-QDLYNL-------- 130

Query: 420 DHETMRTLKLKLNS-VSICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHL 476
                ++L++  N  V I  +   G+  +E L LE   L  +              L  L
Sbjct: 131 -----KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL----SHLHGLIVL 181

Query: 477 HVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVE 536
            +++      I         D +F  L  L               L +  +  L T+   
Sbjct: 182 RLRHLN-INAIR--------DYSFKRLYRLK-------------VLEISHWPYLDTMTPN 219

Query: 537 HCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLG 596
               L+             L  +++ +C N+  +      Y A+ H       LR L L 
Sbjct: 220 CLYGLN-------------LTSLSITHC-NLTAV-----PYLAVRHLV----YLRFLNLS 256

Query: 597 SLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKV 656
                                     N IS++E      S L      L  L+ +++   
Sbjct: 257 -------------------------YNPISTIE-----GSMLHE----LLRLQEIQLVGG 282

Query: 657 NIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRH 710
            +  +         F     L  L +    +L  +   S+  S  +L+ L +  
Sbjct: 283 QLAVV-----EPYAFRGLNYLRVLNVSGN-QLTTL-EESVFHSVGNLETLILDS 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 8e-11
 Identities = 56/364 (15%), Positives = 123/364 (33%), Gaps = 61/364 (16%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFTRM 266
           I ++   ++   E +     + +           N+     P       R++ +++   +
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFK--------NSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 267 QLLLLPSSI-DLLVNLQTLCLVECMLDDIA--IIGKLKNLEILSFWGSGIVKLPEEL-GH 322
           Q+  + +        +Q L +    +  +   +   +  L +L    + +  LP  +  +
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 323 LTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG--PNSERINA---RL 377
             KL  L +SN   L+ I  +       L+ L +S+  +   D    P+    N     L
Sbjct: 140 TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198

Query: 378 DELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWA------LFAIDDHETMRTLKLKL 431
             L     +  L+    + NV+       +L  L            + ++  +  + L  
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 257

Query: 432 NSVS-ICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIV 488
           N +  I       ++ +E L +   +L  +      +       LK L + +N     + 
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI-----PTLKVLDLSHNH----L- 307

Query: 489 DSKERVPLDDAFPI--LESLNL-YNLIKLERICQDRLSVQSFNELKTIRVEH----CDQL 541
                V   +      LE+L L +N I         L + + + LK + + H    C+ L
Sbjct: 308 ---LHVE-RNQPQFDRLENLYLDHNSIV-------TLKLSTHHTLKNLTLSHNDWDCNSL 356

Query: 542 SNIF 545
             +F
Sbjct: 357 RALF 360

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 48/266 (18%), Positives = 89/266 (33%), Gaps = 62/266 (23%)

Query: 300 LKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
           L N +I++F  S + KLP   L    ++  L+L++  +++ I     +    +++LYM  
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGF 102

Query: 359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN---VLPEGFFARKLERLSWAL 415
             + +                  ++P L  L +     N    LP G F     +L    
Sbjct: 103 NAIRYLPPHV-----------FQNVPLLTVLVL---ERNDLSSLPRGIFH-NTPKL---- 143

Query: 416 FAIDDHETMRTLKLKLNS-VSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLK 474
                     TL +  N+   I     Q    ++ L L       N L  +D      L 
Sbjct: 144 ---------TTLSMSNNNLERIEDDTFQATTSLQNLQLS-----SNRLTHVDLSLIPSLF 189

Query: 475 HLHVQNNPDFMCIVDSKERVPLDDAFPILESLNL-YNLIKLERICQDRLSVQSFNELKTI 533
           H +V  N            +        +E L+  +N I         +      EL  +
Sbjct: 190 HANVSYN-----------LLSTLAIPIAVEELDASHNSIN-------VVRGPVNVELTIL 231

Query: 534 RVEHCDQLSNIFLLSAAKCLPRLERI 559
           +++H   L++    +     P L  +
Sbjct: 232 KLQHN-NLTDT---AWLLNYPGLVEV 253

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 21/163 (12%)

Query: 201 PDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINN---PCNFFTGMRK 257
              IA++E   +     SI+ +   +    L  L +         +N      +      
Sbjct: 202 AIPIAVEE---LDASHNSINVVRGPV-NVELTILKLQ--------HNNLTDTAWLLNYPG 249

Query: 258 LRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIVK 315
           L  VD +  +L  +       +  L+ L +    L  +      +  L++L    + ++ 
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 309

Query: 316 LPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
           +        +L  L L +   +  +  +       L+ L +S+
Sbjct: 310 VERNQPQFDRLENLYLDHN-SIVTLKLST---HHTLKNLTLSH 348

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 13/151 (8%)

Query: 212 ISLRGCSIHELPEGLE-CPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQL-L 269
           I+L   ++ +L  G+E    ++ L IN      + N      +G+  L  +      +  
Sbjct: 49  ITLANINVTDL-TGIEYAHNIKDLTIN-NIHATNYNP----ISGLSNLERLRIMGKDVTS 102

Query: 270 LLPSSIDLLVNLQTLCLVECMLDDIAI--IGKLKNLEILSFWGSGIVKLPEELGHLTKLR 327
               ++  L +L  L +     DD  +  I  L  +  +    +G +     L  L +L+
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK 162

Query: 328 QLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
            L++     +       I    +L +LY  +
Sbjct: 163 SLNIQFD-GVHDYRG--IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 278 LVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKL 337
           + +L  + L    + D+  I    N++ L+            +  L+ L +L +     +
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGK-DV 100

Query: 338 KVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATL 389
                  +S L  L  L +S+   +           ++ L ++  LP++ ++
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHD-----------DSILTKINTLPKVNSI 141

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 3e-10
 Identities = 54/378 (14%), Positives = 122/378 (32%), Gaps = 65/378 (17%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFTRM 266
           I ++   ++   E +     + +           N+     P       R++ +++   +
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFK--------NSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 267 QLLLLPSSI-DLLVNLQTLCLVECMLDDIA--IIGKLKNLEILSFWGSGIVKLPEEL-GH 322
           Q+  + +        +Q L +    +  +   +   +  L +L    + +  LP  +  +
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 323 LTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG--PNSERINARLDEL 380
             KL  L +SN   L+ I  +       L+ L +S+  +   D    P+    N   + L
Sbjct: 146 TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204

Query: 381 MHLPRLATLEVHVKNDN---VLPEGFFARKLERLSWA------LFAIDDHETMRTLKLKL 431
             L     +E    + N   V+       +L  L            + ++  +  + L  
Sbjct: 205 STLAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263

Query: 432 NSVS-ICSKKLQGIKDVEYLCLE--KLQDVKNVLFDL------------------DTEGF 470
           N +  I       ++ +E L +   +L  +      +                  +   F
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 323

Query: 471 SQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNEL 530
            +L++L++ +N     IV     + L      L++L L +    +      L    F  +
Sbjct: 324 DRLENLYLDHNS----IVT----LKL-STHHTLKNLTLSHN-DWDCNSLRAL----FRNV 369

Query: 531 KTIRVEHCDQLSNIFLLS 548
               V+  DQ   I    
Sbjct: 370 ARPAVDDADQHCKIDYQL 387

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 57/429 (13%), Positives = 129/429 (30%), Gaps = 53/429 (12%)

Query: 201 PDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRV 260
              IA++E   +     SI+ +   +    L  L +   ++L D             L  
Sbjct: 208 AIPIAVEE---LDASHNSINVVRGPV-NVELTILKLQ-HNNLTDTAW----LLNYPGLVE 258

Query: 261 VDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIVKLPE 318
           VD +  +L  +       +  L+ L +    L  +      +  L++L    + ++ +  
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER 318

Query: 319 ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLD 378
                 +L  L L +   +  +  +       L+ L +S+          N    N+   
Sbjct: 319 NQPQFDRLENLYLDHN-SIVTLKLST---HHTLKNLTLSH----------NDWDCNSLRA 364

Query: 379 ELMHLPRLAT--LEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSI 436
              ++ R A    + H K D  L  G   ++           D     R L+    +  +
Sbjct: 365 LFRNVARPAVDDADQHCKIDYQLEHGLCCKES----------DKPYLDRLLQYIALTSVV 414

Query: 437 CSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVD-SKERVP 495
              +    +      +  +Q + + +           + L  + N     +   + E++ 
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 496 LDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPR 555
            +     L +    NL +              + L           +++    A K    
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRL---------PKDGLARSSDNLNKVFTHLKERQAFKLRET 525

Query: 556 LERIAVINCR------NIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVK 609
             R    + +        QE  A++ + D    ++ E  Q  +L    + +L +      
Sbjct: 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585

Query: 610 KNRQAQGMH 618
             R+    H
Sbjct: 586 DTRRVSHHH 594

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 3e-10
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 5/152 (3%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLL 271
           ++L         + +  P L +L ++ +++L           G   LR +D +    +++
Sbjct: 333 LTLTMNKGSISFKKVALPSLSYLDLS-RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391

Query: 272 PSSIDLLVNLQTLCLVECMLDDIA---IIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLR 327
            ++   L  LQ L      L  +        L+ L  L    +      +     LT L 
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 328 QLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
            L ++          NV +    L  L +S C
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 75/474 (15%), Positives = 142/474 (29%), Gaps = 78/474 (16%)

Query: 270 LLPSSIDLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWGSGIVKLPEE-LGHLTKL 326
           L   S      LQ L L  C ++ I       L +L  L   G+ I          LT L
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 327 RQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRL 386
             L       L  +    I +L+ L++L +++ F+                    +L  L
Sbjct: 107 ENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAY----------FSNLTNL 155

Query: 387 ATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNS-VSICSKKLQGI 444
             +++   N    +        L                 +L + LN    I  +  QGI
Sbjct: 156 VHVDLS-YNYIQTITVNDLQF-LRENPQVNL---------SLDMSLNPIDFIQDQAFQGI 204

Query: 445 KDVEYLCLEKLQDVKNVL-FDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 503
           K      L +L    N    ++       L  LHV          +    +        L
Sbjct: 205 K------LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 504 ESLNL--YNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAV 561
             + +  + L        D +       +  + +       +I  L       + + +++
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV----SIKYLEDVPKHFKWQSLSI 314

Query: 562 INCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCL-----------GSLPELTSFCCGVKK 610
           I C  +++   +D               L++L L            +LP L+     + +
Sbjct: 315 IRC-QLKQFPTLD------------LPFLKSLTLTMNKGSISFKKVALPSLSYL--DLSR 359

Query: 611 NRQAQGMHETCSN-EISSLEDKLDISSALFNEK----VALSNLEVLEMNKVNIEKIWPNQ 665
           N  +     + S+   +SL   LD+S           + L  L+ L+     ++++    
Sbjct: 360 NALSFSGCCSYSDLGTNSLRH-LDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 666 LPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIIS 719
                FL  + L  L +      K  F   +      L  L++         +S
Sbjct: 419 A----FLSLEKLLYLDISYT-NTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLS 466

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 84/520 (16%), Positives = 148/520 (28%), Gaps = 119/520 (22%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVD-- 262
           + L G  I     G       LE L                         +  L+ ++  
Sbjct: 85  LILTGNPIQSFSPGSFSGLTSLENLVAV--------ETKLASLESFPIGQLITLKKLNVA 136

Query: 263 FTRMQLLLLPSSIDLLVNLQTL--------CLVECMLDDIAIIGKLKNLEILSFWGSGIV 314
              +    LP+    L NL  +         +    L  +      +    L    + I 
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR--ENPQVNLSLDMSLNPID 194

Query: 315 KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERIN 374
            + ++     KL +L L   F    I    +  L  L    +     + +    N E   
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE---RNLEIFE 251

Query: 375 ARLDELMHLPRLATLEVHVKNDNVLPEGFFA-RKLERLSWALFAIDDHETMRTLKLKLNS 433
                +  L  +   E  +   N   +       L  +S                + L  
Sbjct: 252 --PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA---------------MSLAG 294

Query: 434 VSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKER 493
           VSI  K L+ +   ++   + L  ++  L    T     LK L +  N        S ++
Sbjct: 295 VSI--KYLEDV--PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK----GSISFKK 346

Query: 494 VPLDDAFPILESLNL-YNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKC 552
           V L    P L  L+L  N +             S+++L T  + H D LS    +  +  
Sbjct: 347 VAL----PSLSYLDLSRNALS-------FSGCCSYSDLGTNSLRHLD-LSFNGAIIMSAN 394

Query: 553 LPRLERIAVINCRN--IQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKK 610
              LE +  ++ ++  ++ +                          SL +L         
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFS-------------------AFLSLEKLLYLDIS--- 432

Query: 611 NRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAM 670
                              D              L++L  L+M   + +          +
Sbjct: 433 -----------YTNTKIDFD-----GIFLG----LTSLNTLKMAGNSFKDN----TLSNV 468

Query: 671 FLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRH 710
           F    NLT L L KC +L+ I S  +  +   LQ L + H
Sbjct: 469 FANTTNLTFLDLSKC-QLEQI-SWGVFDTLHRLQLLNMSH 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 68/440 (15%), Positives = 140/440 (31%), Gaps = 66/440 (15%)

Query: 302 NLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 360
           + + +    + +  L      + ++L+ LDLS C +++ I       L  L  L ++   
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTG-- 89

Query: 361 VEWDDEGPNS-ERINARLDELMHLPRLATLEVHVKNDNVLPEGFFA--RKLERL--SW-A 414
                   N  +  +        L  L  L         L          L++L  +   
Sbjct: 90  --------NPIQSFSPGS--FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 415 LFAIDDHETM------RTLKLKLNS-VSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDT 467
           + +               + L  N   +I    LQ +++   +    L    N +  +  
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV-NLSLDMSLNPIDFIQD 198

Query: 468 EGFS--QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQ 525
           + F   +L  L ++ N +   I+ +            L    L      +    +     
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKT-----CLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 526 SFNELKTIRVEHCDQLSNIFLLSAA----KCLPRLERIAVINCRNIQEIFAVDGEY--DA 579
               L  + ++    L+     S       CL  +  +++    +I+ +  V   +   +
Sbjct: 254 IMEGLCDVTIDEFR-LTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQS 311

Query: 580 IDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALF 639
           +   R +  Q  TL L  L  LT     +  N+   G        + SL   LD+S    
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLT-----LTMNK---GSISFKKVALPSLS-YLDLSRNAL 362

Query: 640 NE-------KVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIF 692
           +         +  ++L  L+++           +  A F+  + L  L  +    LK + 
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGA------IIMSANFMGLEELQHLDFQHS-TLKRVT 415

Query: 693 SASMLGSFEHLQHLEIRHCK 712
             S   S E L +L+I +  
Sbjct: 416 EFSAFLSLEKLLYLDISYTN 435

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.3 bits (151), Expect = 4e-10
 Identities = 60/386 (15%), Positives = 117/386 (30%), Gaps = 58/386 (15%)

Query: 206 LKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPC--NFFTGMRKLRVVDF 263
           ++E       G  +HEL +      LE L+    +    I+           R L  V  
Sbjct: 171 MEESSFSEKDGKWLHELAQH--NTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKV 227

Query: 264 TRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAI-----IGKLKNLEILSFWGSGIVKLPE 318
              ++L L        NL+  C      D         +   + L  L     G  ++P 
Sbjct: 228 GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

Query: 319 ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG--------PNS 370
                 ++R+LDL            +I +   LE L   N      D G           
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV---IGDRGLEVLAQYCKQL 344

Query: 371 ERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLK 430
           +R+   ++       +   E  V    ++      ++LE ++  +  I +          
Sbjct: 345 KRLR--IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN---------- 392

Query: 431 LNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFD----LDTEGFSQLKHLHVQNNPDFMC 486
             S+      L+ + D   + L++ + + ++  D        G  +L+            
Sbjct: 393 -ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG-- 449

Query: 487 IVDSKERVPLDDAFPILESLNLYN-------LIKLERICQDRLSVQSFNELKTIRVEHCD 539
            +       +    P +  + L         L++  R C +         L+ + +  C 
Sbjct: 450 -LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN---------LQKLEMRGC- 498

Query: 540 QLSNIFLLSAAKCLPRLERIAVINCR 565
             S   + +A   LP L  + V   R
Sbjct: 499 CFSERAIAAAVTKLPSLRYLWVQGYR 524

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 70/504 (13%), Positives = 139/504 (27%), Gaps = 70/504 (13%)

Query: 228 CPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV 287
            P L  L +  K      N     + G     V + +             L  L+++   
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISN-----------NLRQLKSVHFR 120

Query: 288 ECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISR 347
             ++ D+        L+ L+                  L  L L  C          I  
Sbjct: 121 RMIVSDLD-------LDRLA------------KARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 348 LVR-LEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFAR 406
             R ++ L M       + +G     +      L  L    T    +   ++       R
Sbjct: 162 HCRKIKTLLMEESSFS-EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220

Query: 407 KLERLSWALFAIDDHETMRTL--------KLKLNSVSICSKKLQGIKDVEYLCLEKLQDV 458
            L  +    F I +                  LN      +K   +     LC   L  +
Sbjct: 221 SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280

Query: 459 KNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERIC 518
                 +     +Q++ L +        ++++++   L    P LE L   N+I    + 
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLY-----ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335

Query: 519 QDRLSVQSFNELKTIRVEHCDQLSNIF----------LLSAAKCLPRLERIAVINCRNIQ 568
                 Q   +LK +R+E       +           L++ A+    LE +  +   +I 
Sbjct: 336 V---LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM-AVYVSDI- 390

Query: 569 EIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSL 628
                +   ++I          R + L     +T             G  +         
Sbjct: 391 ----TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

Query: 629 EDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKL 688
           +  L     L        N+  + +  V        +          NL +L +R C   
Sbjct: 447 QGGLT-DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF----SRGCPNLQKLEMRGCCFS 501

Query: 689 KYIFSASMLGSFEHLQHLEIRHCK 712
           +    A+ +     L++L ++  +
Sbjct: 502 ERAI-AAAVTKLPSLRYLWVQGYR 524

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 26/236 (11%), Positives = 89/236 (37%), Gaps = 15/236 (6%)

Query: 496 LDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPR 555
           + +    L+S++   +  +  +  DRL+    ++L+T++++ C   +   LLS      +
Sbjct: 107 ISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 556 LERIAVINCRNIQE----IFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKK- 610
           ++ + +      ++    +  +     +++       +   +    L  +   C  +   
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 611 --NRQAQGMHETCSNEISSLED--KLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQL 666
                            ++LE+     ++  +   +  ++ +   ++ ++ +  + PN++
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

Query: 667 PVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHC---KGLQEIIS 719
           P+        + +L L            +++    +L+ LE R+    +GL+ +  
Sbjct: 286 PILFPFA-AQIRKLDLLYALLETEDH-CTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 82/508 (16%), Positives = 161/508 (31%), Gaps = 84/508 (16%)

Query: 228 CPRLEFLHINPKDSLFDINNPCNFFT-GMRKLRVVDFTRMQLL---LLPSSIDLLVNLQT 283
            PR    ++ P++    +       +  +R+L+ V F RM +    L   +     +L+T
Sbjct: 83  KPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142

Query: 284 LCLVECML--DD--IAIIGKLKNLEILSFWGSGIVK-----LPEELGHLTKLRQLDLSNC 334
           L L +C     D  ++I+   + ++ L    S   +     L E   H T L  L+    
Sbjct: 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT 202

Query: 335 FKLKVIAPNVISRLVR----LEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLE 390
            +   I+P  +  + R    L  + + +       E             L       +L 
Sbjct: 203 -EFAKISPKDLETIARNCRSLVSVKVGDF------EILELVGFFKAAANLEEF-CGGSLN 254

Query: 391 VHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYL 450
             +          F RKL RL   L  +  +E        +  +   + +++       L
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLG--LSYMGPNE--------MPILFPFAAQIR------KL 298

Query: 451 CLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYN 510
            L            L  +    L+ L  +N      I D    V L      L+ L +  
Sbjct: 299 DLLYALLETEDHCTL-IQKCPNLEVLETRN-----VIGDRGLEV-LAQYCKQLKRLRIER 351

Query: 511 LIKLERICQDRLSV---------QSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAV 561
               + +  +   V         Q   EL+ + V +   ++N  L S    L  L    +
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRL 410

Query: 562 INCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLG---------SLPELTSFCCGVKK-- 610
           +     + I  +  + + +    I   +LR               L  +  +   V+   
Sbjct: 411 VLLDREERITDLPLD-NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469

Query: 611 ----NRQAQGMHETCSNEISSLEDKLDISS------ALFNEKVALSNLEVLEMNKVNIEK 660
                   +G+ E       +L+ KL++        A+      L +L  L +       
Sbjct: 470 LGYVGESDEGLMEFSRG-CPNLQ-KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA-- 525

Query: 661 IWPNQLPVAMFLCFQNLTRLILRKCPKL 688
               Q  + M   + N+  +  R+ P++
Sbjct: 526 SMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 40/243 (16%)

Query: 248 PCNFFTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIA--IIGKLKNLE 304
             N F  +R L ++  +R  +  +     + L NL TL L +  L  I       L  L+
Sbjct: 80  KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139

Query: 305 ILSFWGSGIVKLPEEL-GHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEW 363
            L    + I  +P      +  LR+LDL    +L  I+      L  L  L ++ C    
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC---- 195

Query: 364 DDEGPNSERINARLDELMHLPRLATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHE 422
                    +   +  L  L +L  L++   N  + +  G F + L  L           
Sbjct: 196 --------NLR-EIPNLTPLIKLDELDLS-GNHLSAIRPGSF-QGLMHL----------- 233

Query: 423 TMRTLKLKLNSV-SICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQ 479
             + L +  + +  I       ++ +  + L    L  + + LF         L+ +H+ 
Sbjct: 234 --QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT----PLHHLERIHLH 287

Query: 480 NNP 482
           +NP
Sbjct: 288 HNP 290

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 48/253 (18%), Positives = 92/253 (36%), Gaps = 36/253 (14%)

Query: 273 SSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLS 332
            S D         L +  + D     +L +++ +    S I  + + + +L  + +L L+
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLN 76

Query: 333 NCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVH 392
              KL  I P  ++ L  L  L++               ++   L  L  L +L +L + 
Sbjct: 77  GN-KLTDIKP--LANLKNLGWLFLDEN------------KVK-DLSSLKDLKKLKSLSLE 120

Query: 393 ------VKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKD 446
                 +     LP      +LE L      I D   +  L  KL+++S+   ++  I  
Sbjct: 121 HNGISDINGLVHLP------QLESLYLGNNKITDITVLSRLT-KLDTLSLEDNQISDIVP 173

Query: 447 VEYL-CLEKLQDVKNVLFDLDT-EGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 504
           +  L  L+ L   KN + DL    G   L  L + +     C+               ++
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE---CLNKPINHQSNLVVPNTVK 230

Query: 505 SLNLYNLIKLERI 517
           + +  +L+  E I
Sbjct: 231 NTDG-SLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 24/177 (13%)

Query: 212 ISLRGCSIHELPEGLE-CPRLEFLHI--NPKDSLFDINNPCN---------------FFT 253
           I      I  + +G++  P +  L +  N    +  + N  N                  
Sbjct: 51  IIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLK 109

Query: 254 GMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGI 313
            ++KL+ +      +  + + +  L  L++L L    + DI ++ +L  L+ LS   + I
Sbjct: 110 DLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 168

Query: 314 VKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNS 370
             +   L  LTKL+ L LS    +  +    ++ L  L+ L + +           S
Sbjct: 169 SDI-VPLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLNKPINHQS 221

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 24/248 (9%)

Query: 272 PSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL 331
             +   L  + TL      +  I  +  L NL  L    + I  L   L +LTK+ +L+L
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL-APLKNLTKITELEL 92

Query: 332 SNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEV 391
           S    LK ++   I+ L  ++ L +++             +I   +  L  L  L  L +
Sbjct: 93  SGN-PLKNVSA--IAGLQSIKTLDLTST------------QIT-DVTPLAGLSNLQVLYL 136

Query: 392 HVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYL- 450
            +     +        L+ LS     + D   +  L  KL ++     K+  I  +  L 
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS-KLTTLKADDNKISDISPLASLP 195

Query: 451 CLEKLQDVKNVLFDLDT-EGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLY 509
            L ++    N + D+      S L  + + N      I +       +   P +      
Sbjct: 196 NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT----ITNQPVFYNNNLVVPNVVKGPSG 251

Query: 510 NLIKLERI 517
             I    I
Sbjct: 252 APIAPATI 259

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 248 PCNFFTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDI--AIIGKLKNLE 304
           P   F  + KLR++     +L  LP+ I   L NL+TL + +  L  +   +  +L NL 
Sbjct: 53  PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112

Query: 305 ILSFWGSGIVKLPEEL-GHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
            L    + +  LP  +   LTKL  L L    +L+ +   V  +L  L+EL + N
Sbjct: 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYN 166

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 49/343 (14%), Positives = 108/343 (31%), Gaps = 51/343 (14%)

Query: 218 SIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLP-SSID 276
           +IHE+ +     R +   +    SL       +       ++ +D +   L  +  + + 
Sbjct: 1   AIHEIKQNGN--RYKIEKVT-DSSLKQA--LASLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 277 LLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFK 336
               L+ L L   +L +   +  L  L  L    + +    +EL     +  L  +N   
Sbjct: 56  PFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANN-N 110

Query: 337 LKVIAPNVISRLVRLEELYMS-NCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKN 395
           +  ++ +        + +Y++ N      D             +     R+  L++ +  
Sbjct: 111 ISRVSCSR---GQGKKNIYLANNKITMLRD------------LDEGCRSRVQYLDLKLNE 155

Query: 396 DNVLPEGFFARKLERLSW------ALFAIDDHETMRTLK-LKL--NSVSICSKKLQGIKD 446
            + +     A   + L         ++ +        LK L L  N ++    + Q    
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215

Query: 447 VEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE 504
           V ++ L   KL  ++  L          L+H  ++ N  F C         L D F   +
Sbjct: 216 VTWISLRNNKLVLIEKALRFS-----QNLEHFDLRGNG-FHCG-------TLRDFFSKNQ 262

Query: 505 SLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLL 547
            +       ++++        +   L       C+ L   F  
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 6/124 (4%)

Query: 213 SLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL 270
            L    I  L +       R+++L +   + +  +N           L  ++     +  
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFA-ELAASSDTLEHLNLQYNFIYD 183

Query: 271 LPSSIDLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQL 329
           +   + +   L+TL L    L  +         +  +S   + +V + + L     L   
Sbjct: 184 VKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

Query: 330 DLSN 333
           DL  
Sbjct: 243 DLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 15/151 (9%)

Query: 213 SLRGCSIHELPEGLECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFTRMQ 267
           +L+   I+++   +   +L+ L ++        +N        F      +  +     +
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLS--------SNKLAFMGPEF-QSAAGVTWISLRNNK 225

Query: 268 LLLLPSSIDLLVNLQTLCLVECMLDDIAI-IGKLKNLEILSFWGSGIVKLPEELGHLTKL 326
           L+L+  ++    NL+   L         +     KN  + +     + KL  +      +
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 327 RQLDLSNCFKLKVIAPNVISRLVRLEELYMS 357
             L     +  + +      RL+ L   +  
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 58/284 (20%), Positives = 98/284 (34%), Gaps = 50/284 (17%)

Query: 214 LRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPS 273
           L    +  LPE    P LE L  +  +SL ++         ++ L V +     L  LP 
Sbjct: 78  LNNLGLSSLPE--LPPHLESLVAS-CNSLTEL---PELPQSLKSLLVDNNNLKALSDLPP 131

Query: 274 SIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSN 333
                  L+ L +    L+ +  +     L+I+    + + KLP+    L     +   N
Sbjct: 132 ------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE---FIAAGN 182

Query: 334 CFKLKVIAPNVISRLVRLEELYMSNC-FVEWDDEGPNSERINAR------LDELMHLPRL 386
             +L+ +    +  L  L  +Y  N    +  D   + E I A       L EL +LP L
Sbjct: 183 N-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 239

Query: 387 ATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKD 446
            T+         LP+      LE L+                  L  +    + L  + D
Sbjct: 240 TTIYADNNLLKTLPDLP--PSLEALN-------------VRDNYLTDLPELPQSLTFL-D 283

Query: 447 VEYLCLEKLQDVKNVLFDLD---------TEGFSQLKHLHVQNN 481
           V       L ++   L+ L+          +    L+ L+V NN
Sbjct: 284 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 327

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 19/149 (12%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHI--NPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLL 269
           I +   S+ +LP+    P LEF+    N  + L ++ N       +  L  +      L 
Sbjct: 158 IDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELPELQN-------LPFLTAIYADNNSLK 208

Query: 270 LLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQL 329
            LP   DL ++L+++     +L+++  +  L  L  +    + +  LP+    L  L   
Sbjct: 209 KLP---DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVR 265

Query: 330 DLSNCFKLKVIAPNVISRLVRLEELYMSN 358
           D      L  + P +   L  L+      
Sbjct: 266 DN----YLTDL-PELPQSLTFLDVSENIF 289

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 49/314 (15%), Positives = 97/314 (30%), Gaps = 67/314 (21%)

Query: 252 FTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWG 310
           F  ++ L  +     ++  +       LV L+ L L +  L ++      K L+ L    
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHE 130

Query: 311 SGIVKLPEE-LGHLTKLRQLDLS-NCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGP 368
           + I K+ +     L ++  ++L  N  K   I       + +L  + +++          
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--------- 181

Query: 369 NSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLK 428
           N   I   L      P L  L +       +        L  L               L 
Sbjct: 182 NITTIPQGL-----PPSLTELHLDGNKITKVDAASLKG-LNNL-------------AKLG 222

Query: 429 LKLNSVS-ICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFM 485
           L  NS+S + +  L     +  L L   KL  V   L D        ++ +++ NN    
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-----KYIQVVYLHNNN--- 274

Query: 486 CIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIF 545
            I      +  +D  P   +    +   +       L     N ++   ++      + F
Sbjct: 275 -I----SAIGSNDFCPPGYNTKKASYSGV------SL---FSNPVQYWEIQ-----PSTF 315

Query: 546 LLSAAKCLPRLERI 559
                +C+     +
Sbjct: 316 -----RCVYVRAAV 324

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 36/179 (20%)

Query: 213 SLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL 270
            +    I ++ + +     ++  + +   + L         F GM+KL  +      +  
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELG-TNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 271 LP-----------------SSIDL-----LVNLQTLCLVECMLDDIA--IIGKLKNLEIL 306
           +P                 + +D      L NL  L L    +  +    +    +L  L
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245

Query: 307 SFWGSGIVKLPEELGHLTKLRQLDLS-NCFKLKVIAPNVI------SRLVRLEELYMSN 358
               + +VK+P  L     ++ + L  N   +  I  N        ++      + + +
Sbjct: 246 HLNNNKLVKVPGGLADHKYIQVVYLHNN--NISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 46/237 (19%), Positives = 66/237 (27%), Gaps = 58/237 (24%)

Query: 248 PCNFFTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIAIIGKLKNLEIL 306
           P +       L     +   L     +       L  L L    L  + + G L  L  L
Sbjct: 26  PPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 307 SFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDE 366
               + +  LP     L  L  LD+S   +L  +    +  L  L+ELY+          
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-------- 133

Query: 367 GPNS-ERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMR 425
             N  + +   L  L   P+L  L +   N   LP G     LE L              
Sbjct: 134 --NELKTLPPGL--LTPTPKLEKLSLANNNLTELPAGLL-NGLENL-------------D 175

Query: 426 TLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNP 482
           TL L+ N                      L  +    F         L    +  NP
Sbjct: 176 TLLLQEN---------------------SLYTIPKGFFGS-----HLLPFAFLHGNP 206

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 8e-09
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 15/139 (10%)

Query: 255 MRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIV 314
           MR   + D     LL          +++ L L    L  +  + +L  +  L    + + 
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR 476

Query: 315 KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMS-NCFVEWDDEGPNSERI 373
            LP  L  L  L  L  S+   L+ +    ++ L RL+EL +  N   +           
Sbjct: 477 ALPPALAALRCLEVLQASDN-ALENVDG--VANLPRLQELLLCNNRLQQSAA-------- 525

Query: 374 NARLDELMHLPRLATLEVH 392
              +  L+  PRL  L + 
Sbjct: 526 ---IQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 255 MRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIV 314
           +  +  +D +  +L  LP ++  L  L+ L   +  L+++  +  L  L+ L    + + 
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 521

Query: 315 KLPE--ELGHLTKLRQLDLSN 333
           +      L    +L  L+L  
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQG 542

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 53/243 (21%), Positives = 81/243 (33%), Gaps = 41/243 (16%)

Query: 252 FTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIA--IIGKLKNLEILSF 308
           F  +  L V+   R  +  +     + L +L TL L +  L  I       L  L  L  
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154

Query: 309 WGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG 367
             + I  +P      +  L +LDL    KL+ I+      L  L+ L +  C        
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-------- 206

Query: 368 PNSERINARLDELMHLPRLATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHETMRT 426
                I   +  L  L  L  LE+   N    +  G F   L  L             + 
Sbjct: 207 ----NIK-DMPNLTPLVGLEELEMS-GNHFPEIRPGSF-HGLSSL-------------KK 246

Query: 427 LKLKLNSV-SICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPD 483
           L +  + V  I      G+  +  L L    L  + + LF         L  LH+ +NP 
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT----PLRYLVELHLHHNP- 301

Query: 484 FMC 486
           + C
Sbjct: 302 WNC 304

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 29/162 (17%)

Query: 212 ISLRGCSIH-ELPEGLECPRLEFLHINPKDSLFDINNPCNFFTG--------MRKLRVVD 262
           + +   +    +P   +C  L+ L I+            N  +G          +L++++
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDIS-----------GNKLSGDFSRAISTCTELKLLN 253

Query: 263 FTRMQLL-LLPSSIDLLVNLQTLCLVECMLD-DI--AIIGKLKNLEILSFWGSGIV-KLP 317
            +  Q +  +P     L +LQ L L E     +I   + G    L  L   G+     +P
Sbjct: 254 ISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 318 EELGHLTKLRQLDLSNCFKLK-VIAPNVISRLVRLEELYMSN 358
              G  + L  L LS+       +  + + ++  L+ L +S 
Sbjct: 312 PFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 8e-08
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 271 LPSSIDLLVNLQTLCLVECMLD-DIAIIGKLKNLEILSFWG---SGIVKLPEELGHLTKL 326
           + SS+  L  L++L L    ++  ++      +L  L       SG V     LG  + L
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 327 RQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
           + L++S+         +   +L  LE L +S  
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 56/203 (27%)

Query: 212 ISLRGCSIH-ELPEGLE---CPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVD----- 262
           + L   S+   +        C  L+FL+++   +  D     +    +  L V+D     
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVS--SNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 263 --------------FTRMQLLLLPS-------SIDLLVNLQTLCLVECMLD-DIAIIGKL 300
                            ++ L +          +   VNL+ L +        I  +G  
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDC 222

Query: 301 KNLEILSFWGSGIV-KLPEELGHLTKLRQLDLS-----------NCFKLKV--------- 339
             L+ L   G+ +       +   T+L+ L++S               L+          
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282

Query: 340 --IAPNVISRLVRLEELYMSNCF 360
             I   +      L  L +S   
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNH 305

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 34/119 (28%)

Query: 221 ELPEGL-ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLV 279
           E+P+ L     LE L          ++   N  TG                +PS +    
Sbjct: 457 EIPQELMYVKTLETL---------ILDF--NDLTGE---------------IPSGLSNCT 490

Query: 280 NLQTLCLVECMLDDI--AIIGKLKNLEILSFWG---SGIVKLPEELGHLTKLRQLDLSN 333
           NL  + L    L       IG+L+NL IL       SG   +P ELG    L  LDL+ 
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG--NIPAELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 3e-05
 Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 36/180 (20%)

Query: 212 ISLRGCSIH-ELPEGL-ECPRLEFLHIN--------PKDSLFDINN-------------- 247
           + L G   +  +P     C  LE L ++        P D+L  +                
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 248 -PCNFFTGMRKLRVVDFTRMQLL-LLPSSI--DLLVNLQTLCLVECMLDDI--AIIGKLK 301
            P +       L  +D +       +  ++  +    LQ L L            +    
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 302 NLEILSFWG---SGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
            L  L       SG   +P  LG L+KLR L L     L+   P  +  +  LE L +  
Sbjct: 419 ELVSLHLSFNYLSG--TIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDF 475

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 29/287 (10%), Positives = 73/287 (25%), Gaps = 39/287 (13%)

Query: 213 SLRGCSIHELPEGLECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFTRMQ 267
                +I  +         + +++         NN              +++ +D    +
Sbjct: 105 HAANNNISRVSCSR-GQGKKNIYLA--------NNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 268 LLLLPSS--IDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTK 325
           +  +  +        L+ L L    + D+        L+ L    + +  +  E      
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215

Query: 326 LRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPR 385
           +  + L N  KL +I    +     LE   +            N        D      R
Sbjct: 216 VTWISLRNN-KLVLI-EKALRFSQNLEHFDLRG----------NGFHCGTLRDFFSKNQR 263

Query: 386 LATLEVHVKNDNVLPEGFFARKLERLSWALFAIDD-----HETMRTLKLKLNSVSICSKK 440
           + T+                       +  +  +D      + +  LK K +++      
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 441 LQGIKDVEYLCLEKLQDV---KNVLFDLDTEGF---SQLKHLHVQNN 481
                + E     + +++   K     +  +          L  +  
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 61/512 (11%), Positives = 139/512 (27%), Gaps = 84/512 (16%)

Query: 218 SIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQL-LLLPSSID 276
           +IHE+ +     R +   +    SL       +       ++ +D +   L  +  + + 
Sbjct: 1   AIHEIKQNG--NRYKIEKVT-DSSLKQA--LASLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 277 LLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPE-----------------E 319
               L+ L L   +L +   +  L  L  L    + + +L                    
Sbjct: 56  PFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115

Query: 320 LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDE 379
                  + + L+N  K+ ++         R++ L +            N        + 
Sbjct: 116 CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKL----------NEIDTVNFAEL 164

Query: 380 LMHLPRLATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICS 438
                 L  L +   N    +       KL+ L                 L  N ++   
Sbjct: 165 AASSDTLEHLNLQ-YNFIYDVKGQVVFAKLKTLD----------------LSSNKLAFMG 207

Query: 439 KKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPL 496
            + Q    V ++ L   KL  ++  L          L+H  ++ N  F C         L
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFS-----QNLEHFDLRGNG-FHCG-------TL 254

Query: 497 DDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRL 556
            D F   + +       ++++        +   L       C+ L            P  
Sbjct: 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA----------PFA 304

Query: 557 ERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQG 616
           +R+  +  +    +     E + ++ +R    + R +      +  +    V   +QA+ 
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDA-LKEQYRTVIDQVTLRKQAKI 363

Query: 617 MHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQN 676
             E     +          S        L       + ++ ++     Q P+ +      
Sbjct: 364 TLEQKKKALDEQV------SNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417

Query: 677 LTRLILRKCPKLKYIFSASMLGSFEHLQHLEI 708
               +  +   ++                L  
Sbjct: 418 RYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 70/544 (12%), Positives = 146/544 (26%), Gaps = 117/544 (21%)

Query: 212 ISLRGCSIHELPEGLE-CPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL 270
           + +  C        +   P++  + +  K    D N           L    +       
Sbjct: 48  VFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN-----------LVPDGWGGYVYPW 96

Query: 271 LPSSIDLLVNLQTLCLVECMLDD---IAIIGKLKNLEILSFWG------SGIVKLPEELG 321
           + +       L+ + L   ++ D     I    KN ++L           G+  +     
Sbjct: 97  IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AA 153

Query: 322 HLTKLRQLDLSNCFKLKVIAP---NVISRLVRLEELYMSNCFVEWDDEGPNSERINARLD 378
               L++LDL       V      +       L  L +S    E              L+
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA---------LE 204

Query: 379 ELM-HLPRLATLEVH--VKNDNVLPEGFFARKLERLSWALFAIDDHETMRTL-------K 428
            L+   P L +L+++  V  + +      A +LE L    +  +    + +         
Sbjct: 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264

Query: 429 LKLNSVSICSKK--------LQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQN 480
            +L  +S                   +  L L         L  L      +L+ L V +
Sbjct: 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL-LCQCPKLQRLWVLD 323

Query: 481 NPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS-------VQSFNELKTI 533
                  ++      L      L  L ++            L+            +L+++
Sbjct: 324 Y------IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

Query: 534 RVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTL 593
            +  C Q++N  L++ A+  P + R  +         +      D               
Sbjct: 378 -LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI-------------- 422

Query: 594 CLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVA-----LSNL 648
                  +   C                      L  +L +S  L ++           +
Sbjct: 423 ---GFGAIVEHC--------------------KDLR-RLSLSGLLTDKVFEYIGTYAKKM 458

Query: 649 EVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEI 708
           E+L +          +     +     +L +L +R CP        +     E ++ L +
Sbjct: 459 EMLSVAFAGD----SDLGMHHVLSGCDSLRKLEIRDCPFGDKA-LLANASKLETMRSLWM 513

Query: 709 RHCK 712
             C 
Sbjct: 514 SSCS 517

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 62/393 (15%), Positives = 123/393 (31%), Gaps = 71/393 (18%)

Query: 206 LKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTR 265
           L+E     + G  +   P+      L  L+I+   S    +      T    L+ +   R
Sbjct: 163 LRESDVDDVSGHWLSHFPDT--YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 266 -MQLLLLPSSIDLLVNLQTLCLVECMLDD--------IAIIGKLKNLEILS-FWGSGIVK 315
            + L  L + +     L+ L       +            +   K L  LS FW +    
Sbjct: 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280

Query: 316 LPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINA 375
           LP      ++L  L+LS           ++ +  +L+ L++ +     +D G     + +
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY---IEDAGLEV--LAS 335

Query: 376 RLDELMHLPRLATLE--VHVKNDNVLPEGFFA-----RKLERL--------SWALFAIDD 420
              +L  L R+   E  V   N  +  +G  +      KLE +        + AL  I  
Sbjct: 336 TCKDLREL-RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR 394

Query: 421 HET-MRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQ 479
           +   M   +L +              D+ +  +               E    L+ L + 
Sbjct: 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI--------------VEHCKDLRRLSLS 440

Query: 480 NNPDFMCIVDSKERVPLDDAFPILESLNLYN-------LIKLERICQDRLSVQSFNELKT 532
                  + D K    +      +E L++         +  +   C           L+ 
Sbjct: 441 G-----LLTD-KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS---------LRK 485

Query: 533 IRVEHCDQLSNIFLLSAAKCLPRLERIAVINCR 565
           + +  C    +  LL+ A  L  +  + + +C 
Sbjct: 486 LEIRDC-PFGDKALLANASKLETMRSLWMSSCS 517

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 228 CPRLEFLHINPKD----SLFDINNPCNFFT--GMRKLRVVDFTRMQLLLLPSSIDLLV-- 279
           CP+LE +    +     +L  I       T   +  +       + L  L      +V  
Sbjct: 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430

Query: 280 --NLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGI--VKLPEELGHLTKLRQLDLSN 333
             +L+ L L   + D     I    K +E+LS   +G   + +   L     LR+L++ +
Sbjct: 431 CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490

Query: 334 CFKLKVIAPNVISRLVRLEELYMSNCFV 361
           C           S+L  +  L+MS+C V
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSV 518

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 44/261 (16%), Positives = 84/261 (32%), Gaps = 43/261 (16%)

Query: 248 PCNFFTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIAIIG----KLKN 302
           P    +   +L   +    +L  LP  + D L  L  L L    L              +
Sbjct: 23  PTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 303 LEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE 362
           L+ L    +G++ +      L +L  LD  +    ++   +V   L  L  L +S+    
Sbjct: 80  LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--- 136

Query: 363 WDDEGPNSERINARLDELMHLPRLATLEVHV-KNDNVLPEGFFAR------------KLE 409
                 ++      +     L  L  L++             F              +LE
Sbjct: 137 ------HTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 410 RLSWALFAIDDHETMRTLKLKLNSV-SICSKKLQGIKDVEYLCLE--KLQDV-KNVLFDL 465
           +LS   F  +   +++ L +  N+  S+ +   + +  ++ L      +    K  L   
Sbjct: 189 QLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

Query: 466 DTEGFSQLKHLHVQNNPDFMC 486
                S L  L++  N  F C
Sbjct: 247 ----PSSLAFLNLTQND-FAC 262

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 14/120 (11%)

Query: 249 CNFFTGMRKLRVVDFTRMQL---LLLPSSIDLLVNLQTLCLV-ECMLD-DI-AIIGKLKN 302
           C+  T   ++  +D + + L     +PSS+  L  L  L +     L   I   I KL  
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 303 LEILSFWG---SGIVKLPEELGHLTKLRQLDLSNCFKLK-VIAPNVISRLVRLEELYMSN 358
           L  L       SG +  P+ L  +  L  LD S    L   + P  IS L  L  +    
Sbjct: 103 LHYLYITHTNVSGAI--PDFLSQIKTLVTLDFSYN-ALSGTL-PPSISSLPNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 53/189 (28%)

Query: 211 AISLRGCSIH---ELPEGL-ECPRLEFLHINPKDSLFDINNPCNFFTG--------MRKL 258
            + L G ++     +P  L   P L FL       +  INN      G        + +L
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFL------YIGGINN----LVGPIPPAIAKLTQL 103

Query: 259 RVVDFTRMQLL-LLPSSIDLLVNLQTLCLVECMLD-DI-AIIGKLKNLEILSFWG---SG 312
             +  T   +   +P  +  +  L TL      L   +   I  L NL  ++F G   SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 313 IVKLPEELGHLTKLRQ-LDLSNCF------------KLKVI----------APNVISRLV 349
              +P+  G  +KL   + +S                L  +          A  +     
Sbjct: 164 --AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 350 RLEELYMSN 358
             ++++++ 
Sbjct: 222 NTQKIHLAK 230

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 287 VECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVIS 346
           V C  D      ++ NL++          +P  L +L  L  L +     L    P  I+
Sbjct: 41  VLC--DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98

Query: 347 RLVRLEELYMSN 358
           +L +L  LY+++
Sbjct: 99  KLTQLHYLYITH 110

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 271 LPSSIDLLVNLQTLCLVECMLD-DIAIIGKLKNLEILSFWG---SGIVKLPEELGHLTKL 326
                    N Q + L +  L  D+  +G  KNL  L        G   LP+ L  L  L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG--TLPQGLTQLKFL 270

Query: 327 RQLDLSN 333
             L++S 
Sbjct: 271 HSLNVSF 277

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 252 FTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIA--IIGKLKNLEILSF 308
           F    +L+V+D +R ++  +       L +L TL L    +  +A      L +L+ L  
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 309 WGSGIVKLPEEL-GHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
             + +  L     GHL  L++L++++        P   S L  LE L +S+ 
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 56/317 (17%), Positives = 105/317 (33%), Gaps = 33/317 (10%)

Query: 252 FTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWG 310
              + KLR++  +  ++  L  S+      L+ L L    L  I+      NL+ L    
Sbjct: 41  ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-HPTVNLKHLDLSF 99

Query: 311 SGIVKLPE--ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG- 367
           +    LP   E G++++L+ L LS    L+  +   I+ L   + L +        ++  
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

Query: 368 --PNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFA---IDDHE 422
              +    +  +    +      L+V VK    L        LE    + F         
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218

Query: 423 TMRTLKLKLNSVSICSKKLQGI------KDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHL 476
             +   L LN++         I        V Y  +  ++    + F       + LK L
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 477 HVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI-----KLERICQDRLSVQ-----S 526
            +        +V      P    + I  ++N+ N        +  +C  ++S       S
Sbjct: 279 SIHQ------VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 527 FNELKTIRVEHCDQLSN 543
            N L     E+C  L+ 
Sbjct: 333 NNLLTDTVFENCGHLTE 349

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 23/149 (15%), Positives = 62/149 (41%), Gaps = 6/149 (4%)

Query: 214 LRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQL--L 269
                + +           LE L +   + L +++      T M+ L+ +D ++  +   
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQ-MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 270 LLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQL 329
                     +L +L +   +L D         +++L    + I  +P+++  L  L++L
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449

Query: 330 DLSNCFKLKVIAPNVISRLVRLEELYMSN 358
           ++++  +LK +   +  RL  L+++++  
Sbjct: 450 NVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 231 LEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECM 290
           L    +      F  +     F+ M        +  +++ +      +     L     +
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNF-TVSGTRMVHMLCP-SKISPFLHLDFSNNL 335

Query: 291 LDDIA--IIGKLKNLEILSFWGSGIVKLPEELG---HLTKLRQLDLSNCFKLKVIAPNVI 345
           L D      G L  LE L    + + +L +       +  L+QLD+S             
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 346 SRLVRLEELYMSNC 359
           S    L  L MS+ 
Sbjct: 396 SWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 60/432 (13%), Positives = 134/432 (31%), Gaps = 62/432 (14%)

Query: 301 KNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
           +   IL+   + I +L    +  L+KLR L +S+  +++ +  +V      LE L +S+ 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSH- 78

Query: 360 FVEWDDEGPNSERINARLDELM--HLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFA 417
                    N      +L ++       L  L++     + LP       + +L      
Sbjct: 79  ---------N------KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL------ 117

Query: 418 IDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLH 477
                  + L L      +    +  I  +    +  +   +      D EG        
Sbjct: 118 -------KFLGLSTT--HLEKSSVLPIAHLNISKVLLVLG-ETYGEKEDPEGLQDFNTES 167

Query: 478 VQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEH 537
           +          + +    LD +   + +L L N+  +    +    +    +L+T     
Sbjct: 168 LHIVF----PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 538 CDQLSNIFL----LSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTL 593
              L+NI            L     +   +  N++    +D          ++   +  +
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 594 CLGSLPELTS--FCCGVKKNR------QAQGMHETCSNEISSLEDKLD-----ISSALFN 640
                    S  +      N         + +H  C ++IS     LD     ++  +F 
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL-HLDFSNNLLTDTVFE 342

Query: 641 EKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSF 700
               L+ LE L +    ++++        M    ++L +L + +   + Y          
Sbjct: 343 NCGHLTELETLILQMNQLKELSK---IAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWT 398

Query: 701 EHLQHLEIRHCK 712
           + L  L +    
Sbjct: 399 KSLLSLNMSSNI 410

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 271 LPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLD 330
           + +++  L   + L L    ++ I+ +  ++NL ILS   + I K+         L +L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99

Query: 331 LSNCFKLKVIAPNVISRLVRLEELYMSNCFV-EWDDEGPNSERINARLDELMHLPRLATL 389
           +S   ++  ++   I +LV L  LYMSN  +  W +           +D+L  L +L  L
Sbjct: 100 ISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWGE-----------IDKLAALDKLEDL 145

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 52/324 (16%), Positives = 97/324 (29%), Gaps = 33/324 (10%)

Query: 213 SLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLP 272
            +    +  LPE      LE+++        D N           L V+     QL  LP
Sbjct: 126 DVDNNQLTMLPELP--ALLEYINA-------DNNQLTMLPELPTSLEVLSVRNNQLTFLP 176

Query: 273 SSIDLLVNLQTLCLVECMLDDI-AIIGKLKNLE----ILSFWGSGIVKLPEELGHLTKLR 327
              +L  +L+ L +   +L+ + A+  +  + E          + I  +PE +  L    
Sbjct: 177 ---ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233

Query: 328 QLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLA 387
            + L +   L       +S+     + +    +    D   N+             P   
Sbjct: 234 TIILEDN-PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENK 292

Query: 388 TLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDV 447
             +V         E          S  L  + D  + R        V+   +KL    ++
Sbjct: 293 QSDVSQIWHAFEHE----EHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348

Query: 448 EYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESL- 506
                    D      D     ++ L+            +V        D+    L SL 
Sbjct: 349 RQQSFAVAADATESCEDRVALTWNNLR---------KTLLVHQASEGLFDNDTGALLSLG 399

Query: 507 -NLYNLIKLERICQDRLSVQSFNE 529
             ++ L  LE I +D++    F +
Sbjct: 400 REMFRLEILEDIARDKVRTLHFVD 423

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 24/184 (13%)

Query: 206 LKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTR 265
           L      +L   S+ +L    E   ++  + +  + +  +            L+ +  + 
Sbjct: 18  LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN-IQSLAG----MQFFTNLKELHLSH 72

Query: 266 MQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTK 325
            Q+  L S +  L  L+ L +    L ++  I     L  L    + +    + L HL  
Sbjct: 73  NQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDT-DSLIHLKN 129

Query: 326 LRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPR 385
           L  L + N  KLK I    +  L +LE L +    +                  L  L +
Sbjct: 130 LEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEIT-------------NTGGLTRLKK 173

Query: 386 LATL 389
           +  +
Sbjct: 174 VNWI 177

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 9/141 (6%)

Query: 206 LKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTR 265
           L +   +S+    +  L  G+    L  L ++  + L D ++       ++ L ++    
Sbjct: 84  LTKLEELSVNRNRLKNL-NGIPSACLSRLFLD-NNELRDTDS----LIHLKNLEILSIRN 137

Query: 266 MQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTK 325
            +L  +   +  L  L+ L L    + +   + +LK +  +   G   V  P +  +  +
Sbjct: 138 NKLKSI-VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVK--YQPE 194

Query: 326 LRQLDLSNCFKLKVIAPNVIS 346
           L   +       + I+P  IS
Sbjct: 195 LYITNTVKDPDGRWISPYYIS 215

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 28/174 (16%), Positives = 48/174 (27%), Gaps = 19/174 (10%)

Query: 213 SLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTG-MRKLRVVDFTRMQLLLL 271
           S+    +  LP       L  L           NN           L+ +  +  +L  L
Sbjct: 187 SVSDNQLASLPTLP--SELYKLWAY--------NNRLTSLPALPSGLKELIVSGNRLTSL 236

Query: 272 PSSIDLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLD 330
           P        L+ L +    L  +  +      L  LS + + + +LPE L HL+    ++
Sbjct: 237 PVLPS---ELKELMVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVN 290

Query: 331 LSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLP 384
           L     L       +  +             +        E     L     L 
Sbjct: 291 LEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 60/384 (15%), Positives = 129/384 (33%), Gaps = 53/384 (13%)

Query: 213 SLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLP 272
            + G  +  LP     P L+ L +    S   + +     + + KL   +    QL  LP
Sbjct: 127 WIFGNQLTSLPVLP--PGLQELSV----SDNQLASLPALPSELCKLWAYN---NQLTSLP 177

Query: 273 SSIDLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL 331
                   LQ L + +  L  +  +  +L  L   +   + +  LP        L++L +
Sbjct: 178 MLPS---GLQELSVSDNQLASLPTLPSELYKLWAYN---NRLTSLPALPS---GLKELIV 228

Query: 332 SNCFKLKVIAPNVISRLVRLEELYMSNCF-VEWDDEGPNSERINARL-------DELMHL 383
           S   +L  + P + S L   +EL +S                ++          + L+HL
Sbjct: 229 SGN-RLTSL-PVLPSEL---KELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHL 283

Query: 384 PRLATLEVHVKNDNVLPE--GFFARKLERLSWAL--FAIDDHETMRTLKLKLNSVSICSK 439
               T+ +     N L E      R++             D       +         + 
Sbjct: 284 SSETTVNLE---GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

Query: 440 KLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVP-LDD 498
            L   ++ E    ++         + + + FS      +    +F+     K ++     
Sbjct: 341 WLVPAREGEPAPADRWHMFGQ---EDNADAFSLFLD-RLSETENFIKDAGFKAQISSWLA 396

Query: 499 AFPILESL--NLYNLIKLERI-CQDRLSVQSFNELKTI----RVEHCDQLSNI-FLLSAA 550
                E+L  N + +       C+DR++    +++K +      E     +++  L++  
Sbjct: 397 QLAEDEALRANTFAMATEATSSCEDRVTF-FLHQMKNVQLVHNAEKGQYDNDLAALVATG 455

Query: 551 KCLPRLERIAVINCRNIQEIFAVD 574
           + + RL ++  I    ++ +  VD
Sbjct: 456 REMFRLGKLEQIAREKVRTLALVD 479

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 256 RKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIV 314
               V++     L  LP  +    ++ TL + +  L  + A+  +L+ LE+    G+ + 
Sbjct: 40  NGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTLEV---SGNQLT 94

Query: 315 KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMS-NCFVEWDDEGPNSERI 373
            LP     L +L          L  +          L +L++  N         P  + +
Sbjct: 95  SLPVLPPGLLELSIFSNPLT-HLPALPSG-------LCKLWIFGNQLTSLPVLPPGLQEL 146

Query: 374 NARLDELMHLPRL 386
           +   ++L  LP L
Sbjct: 147 SVSDNQLASLPAL 159

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 43/230 (18%)

Query: 261 VDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWGSGIVKLPE 318
               +  L  +P  I      Q + L    +  +  A     +NL IL    + + ++  
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 319 E-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARL 377
                L  L QLDLS+  +L+ + P     L RL  L++  C +         + +   L
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL---------QELGPGL 124

Query: 378 DELMHLPRLATLEVHVKNDN---VLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNS- 433
                L  L  L +    DN    LP+  F R L  L               L L  N  
Sbjct: 125 --FRGLAALQYLYL---QDNALQALPDDTF-RDLGNL-------------THLFLHGNRI 165

Query: 434 VSICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNN 481
            S+  +  +G+  ++ L L   ++  V    F        +L  L++  N
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR----DLGRLMTLYLFAN 211

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 50/283 (17%), Positives = 93/283 (32%), Gaps = 21/283 (7%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLL 269
           + L   SI EL E        L+FL +  +     I    N F G+  L ++     Q L
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKLDYNQFL 92

Query: 270 LLPSSI-DLLVNLQTLCLVECMLDDIAIIG----KLKNLEILSFWGSGIVKLPEE--LGH 322
            L +   + L NL+ L L +C LD   + G     L +LE+L    + I K+       +
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 323 LTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMH 382
           + +   LDL+   K+K I    +          +    +    +         +      
Sbjct: 153 MRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFK 210

Query: 383 LPRLATLEVHVKNDNVLPEGFFARKLE--RLSWALFAIDDHETMRTLKLKLNSVSICSKK 440
              + TL++            F   +   ++   + +   +                + K
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 441 LQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNN 481
                 V+   L   K+  +   +F      F+ L+ L +  N
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFS----HFTDLEQLTLAQN 309

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 57/440 (12%), Positives = 109/440 (24%), Gaps = 117/440 (26%)

Query: 302 NLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 360
           ++  +    + I +L E     L  L+ L +       VI  N    L  L  L +    
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-- 88

Query: 361 VEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDD 420
                   N      +  +                   L  G F   L  L         
Sbjct: 89  --------N------QFLQ-------------------LETGAF-NGLANL--------- 105

Query: 421 HETMRTLKL---KLNSVSICSKKLQGIKDVEYLCLE--KLQDVKNV-LFDLDTEGFSQLK 474
                 L L    L+   +     + +  +E L L    ++ ++    F        +  
Sbjct: 106 ----EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL----NMRRFH 157

Query: 475 HLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIR 534
            L +  N     I         ++     +  +   L +L  I    ++       K   
Sbjct: 158 VLDLTFNK-VKSI--------CEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGN 207

Query: 535 VEHCDQLSNIFLLSAA-KCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTL 593
                 ++ + L     K          I    IQ +   +            F      
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 594 CLGSLP--ELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVL 651
               L    + +                   ++I +L        ++F+     ++LE L
Sbjct: 268 TFKGLEASGVKTCDLS--------------KSKIFALL------KSVFSH---FTDLEQL 304

Query: 652 EMNKVNIEKIWP----------------NQL---PVAMFLCFQNLTRLILRKCPKLKYIF 692
            + +  I KI                  N L      MF     L  L L     ++ + 
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRAL- 362

Query: 693 SASMLGSFEHLQHLEIRHCK 712
                    +L+ L +   +
Sbjct: 363 GDQSFLGLPNLKELALDTNQ 382

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 257 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKL 316
           K  V+D +R     L    D    L+ L  +   L  IA + KL  L+ L    + +   
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG 79

Query: 317 PEELG-HLTKLRQLDLSNCF--KLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERI 373
            E L      L  L+LS      L  I P  + +L  L+ L + NC          +   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFNC--------EVTNLN 129

Query: 374 NARLDELMHLPRLATL 389
           + R +    LP+L  L
Sbjct: 130 DYRENVFKLLPQLTYL 145

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 41/239 (17%)

Query: 252 FTGMRKLRVVDFTRMQLL--LLPSSIDLLVNLQTLCLVEC-MLDDIA--IIGKLKNLEIL 306
           F+G   L  ++ ++  +L  +       L  L  + + +   L  I       L NL+ L
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 307 SFWGSGIVKLPEEL-GHLTKLRQLDLSNCFKLKVIAPNVISRL-VRLEELYMSNCFVEWD 364
               +GI  LP+    H  +   LD+ +   +  I  N    L      L+++       
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN----- 164

Query: 365 DEGPNSERINARLDELMHLPRLATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHET 423
                   I    +   +  +L  L +   N+   LP   F       S           
Sbjct: 165 -------GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH----GASG---------- 203

Query: 424 MRTLKLKLNSV-SICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNN 481
              L +    + S+ S  L+ +K +       L+ +  +      E    L    +   
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL------EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 41/295 (13%), Positives = 82/295 (27%), Gaps = 75/295 (25%)

Query: 301 KNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
           +N   L F  + +  + +        L ++++S    L+VI  +V S L +L E+ +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 360 FVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFAR------------- 406
                    N   IN       +LP L  L +       LP+                  
Sbjct: 90  --------NNLLYINPEA--FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 407 KLERLSWALFAIDDHETMRTLKLKLNSV-------------------------SICSKKL 441
            +  +    F          L L  N +                          + +   
Sbjct: 140 NIHTIERNSFV-GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 442 QGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFP 501
            G      L +      +  +  L + G   LK L  ++  +        +++P  +   
Sbjct: 199 HGASGPVILDIS-----RTRIHSLPSYGLENLKKLRARSTYNL-------KKLPTLEKLV 246

Query: 502 ILESLNLYN-------------LIKLERICQDRLSVQSFNELKTIRVEHCDQLSN 543
            L   +L               + +L  IC   +  Q  + +   R +      +
Sbjct: 247 ALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAED 301

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 259 RVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDI---AIIGKLKNLEILSFWGSGIVK 315
            ++  ++ QL  +P S+        L L    L  +       +L NL  L    + +  
Sbjct: 21  NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 316 LPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
           +  E    +  LR LDLS+   L  +   + S L  LE L + N
Sbjct: 79  ISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN 121

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 35/152 (23%)

Query: 212 ISLRGCSIHELPEGL--ECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFT 264
           + L    ++ +        P L +L ++        +N         F+ ++ L V+   
Sbjct: 69  LLLSHNHLNFISSEAFVPVPNLRYLDLS--------SNHLHTLDEFLFSDLQALEVLLLY 120

Query: 265 RMQLLLLPSSI-DLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHL 323
              ++++  +  + +  LQ L L +          ++    +                 L
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQN---------QISRFPVELIKD---------GNKL 162

Query: 324 TKLRQLDLSNCFKLKVIAPNVISRLVRLEELY 355
            KL  LDLS+  KLK +    + +L    +  
Sbjct: 163 PKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNG 193

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 259 RVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPE 318
            V+D  +     +       VNL+ L L+   L  ++ + KL  L+ L    + I    +
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 319 ELG-HLTKLRQLDLSNCF--KLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINA 375
            L   L  L  L+LS      +  + P  + +L  L+ L + NC          +   + 
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFNC--------EVTNLNDY 138

Query: 376 RLDELMHLPRLATL 389
           R      LP+L  L
Sbjct: 139 RESVFKLLPQLTYL 152

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 24/162 (14%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINN-----PCNFFTGMRKLRVVDFTRM 266
           + +    +  +P+ L    L  LH++        +N              KL  +     
Sbjct: 177 LRISEAKLTGIPKDL-PETLNELHLD--------HNKIQAIELEDLLRYSKLYRLGLGHN 227

Query: 267 QLLLLPSSI-DLLVNLQTLCLVECMLDDI-AIIGKLKNLEILSFWGSGIVKLPEE----- 319
           Q+ ++ +     L  L+ L L    L  + A +  LK L+++    + I K+        
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287

Query: 320 --LGHLTKLRQLDLS-NCFKLKVIAPNVISRLVRLEELYMSN 358
                      + L  N      + P     +     +   N
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 46/273 (16%), Positives = 85/273 (31%), Gaps = 42/273 (15%)

Query: 252 FTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWG 310
           F G++ L  +     ++  +   +   L  LQ L + +  L +I       +L  L    
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHD 132

Query: 311 SGIVKLPEE-LGHLTKLRQLDLS-NCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGP 368
           + I K+P+     L  +  +++  N  +     P     L +L  L +S           
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA--------- 182

Query: 369 NSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLK 428
               I   L        L  L +       +      R   +L               L 
Sbjct: 183 KLTGIPKDL-----PETLNELHLDHNKIQAIELEDLLR-YSKL-------------YRLG 223

Query: 429 LKLNSVS-ICSKKLQGIKDVEYLCLE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFM 485
           L  N +  I +  L  +  +  L L+  KL  V   L DL       L+ +++  N    
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL-----KLLQVVYLHTNNITK 278

Query: 486 CIVDSKERVPLDDAFPILESLNLY-NLIKLERI 517
             V+    V           ++L+ N +    +
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 258 LRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDI---AIIGKLKNLEILSFWGSG-I 313
                 T   +  +PS   L  + QTL L+E  L  I   A    L N+  +       +
Sbjct: 13  EEDFRVTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTL 68

Query: 314 VKLPEEL-GHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
            +L      +L+K+  +++ N   L  I P+ +  L  L+ L + N 
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 58/422 (13%), Positives = 130/422 (30%), Gaps = 58/422 (13%)

Query: 302 NLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 360
             + LS   + I +L   ++  L++LR L LS+  +++ +  +V      LE L +S+  
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH-- 109

Query: 361 VEWDDEGPNSERINARLDEL--MHLPRLATLEVHVKNDNVLPEGFFARKLERLSW-AL-- 415
                   N      RL  +    +  L  L++   + +VLP       L +L++  L  
Sbjct: 110 --------N------RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 416 -------FAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTE 468
                       H  +  + L L S  I   + + ++      L  +    ++       
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 469 GFSQLKHLHVQNNP-DFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSF 527
             + L HL + N   +          +      P L ++ L ++    +           
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 528 NELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRI-- 585
             ++ + + +      I           L+ + + + +N   +F+ +  Y       I  
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 586 ----EFGQLRTLCLGSLPE----------LTSFCCGVKKNRQAQGMHETCSNEISSLEDK 631
               +   +  +C  S              T          +         N + +    
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 632 LDISSALFNEKVALSNLEVLEMNKVNIEKIWP----------NQLPVAMFLCF-QNLTRL 680
             ++  + + +    +L  L  +  +    W           N L  ++F C    +  L
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL 455

Query: 681 IL 682
            L
Sbjct: 456 DL 457

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 50/320 (15%), Positives = 110/320 (34%), Gaps = 31/320 (9%)

Query: 252 FTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWG 310
            + + +LRV+  +  ++  L   +     +L+ L +    L +I+    + +L  L    
Sbjct: 72  ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-CPMASLRHLDLSF 130

Query: 311 SGIVKLPE--ELGHLTKLRQLDLSNCFKLKVIAPNVISRL-VRLEELYMSNCFVEWDDEG 367
           +    LP   E G+LTKL  L LS   K + +    ++ L +    L + +  ++  +  
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 368 PNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALF---AIDDHETM 424
                    L  + H   L +++V++  + +        KL   +         +     
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 425 RTLKLKLNSVSICSKKLQGI------KDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHV 478
             L + L  +    K    +      + VEYL +  L   + +  +  T   + LK L +
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 479 QNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI-----KLERICQDRLSVQ-----SFN 528
           ++  +             +  + +   +N+  L       +  +C    S       + N
Sbjct: 310 EHVKNQ------VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 529 ELKTIRVEHCDQLSNIFLLS 548
                  + C  L  +  L 
Sbjct: 364 VFTDSVFQGCSTLKRLQTLI 383

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 38/277 (13%), Positives = 86/277 (31%), Gaps = 38/277 (13%)

Query: 218 SIHELPEGLECPRLEFLHI--NPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSI 275
              +L +      +E+L+I         D        T ++ L +        L    ++
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324

Query: 276 -DLLVNLQTLCLVECMLDDIAII--GKLKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDL 331
             +   +    L       I ++      +   L+F  +       +    L +L+ L L
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 332 SNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEV 391
                LK     V      +  L   +  +   +            D         ++ V
Sbjct: 385 QRN-GLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAY--------DRTCAWAE--SILV 432

Query: 392 HVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLC 451
              + N+L    F     ++               L L  N +    K +  ++ ++ L 
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKV-------------LDLHNNRIMSIPKDVTHLQALQELN 479

Query: 452 LE--KLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMC 486
           +   +L+ V + +FD      + L+++ + +NP + C
Sbjct: 480 VASNQLKSVPDGVFD----RLTSLQYIWLHDNP-WDC 511

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 28/126 (22%)

Query: 234 LHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTLCLVECMLD 292
           L      +L         F G+ KL  ++    QL  L + + D L  L TL L      
Sbjct: 42  LQSTGLATL-----SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN---- 92

Query: 293 DIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLE 352
                 +L +L +  F             HLT+L +L L    +LK +   V  RL +L+
Sbjct: 93  -----NQLASLPLGVF------------DHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLK 134

Query: 353 ELYMSN 358
           EL ++ 
Sbjct: 135 ELRLNT 140

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 11/93 (11%)

Query: 312 GIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSE 371
           G +     L     L +L + N   L+ +    +  L  L  L +    +          
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL---------R 69

Query: 372 RINARLDELMHLPRLATLEVHVKNDNVLPEGFF 404
            +    D     PRL+ L +       L     
Sbjct: 70  FVAP--DAFHFTPRLSRLNLSFNALESLSWKTV 100

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 11/97 (11%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 271 LPSSIDLLVNLQTLCLVECMLDDIAI--IGKLKNLEILSFWG------SGIVKLPEELGH 322
           LP+       +Q +   +  +  I    +  L+ +E +            + +L +    
Sbjct: 53  LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112

Query: 323 LTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
              + ++++ +C  +       +     L+ L++S+ 
Sbjct: 113 QKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 43/204 (21%), Positives = 64/204 (31%), Gaps = 44/204 (21%)

Query: 212 ISLRGCSIHELPEGLE-----CPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVD---- 262
           + L    I      L      C +L+ L +     L   +   N       L  ++    
Sbjct: 98  MDLSNSVIEV--STLHGILSQCSKLQNLSLE---GLRLSDPIVNTLAKNSNLVRLNLSGC 152

Query: 263 --FTRMQLLLLPSSIDLLVNLQTLCLVECM-LDDIAII----GKLKNLEILSFWG----- 310
             F+   L  L SS      L  L L  C    +  +        + +  L+  G     
Sbjct: 153 SGFSEFALQTLLSS---CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209

Query: 311 --SGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGP 368
             S +  L         L  LDLS+   LK        +L  L+ L +S C  +   E  
Sbjct: 210 QKSDLSTLVR---RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC-YDIIPET- 264

Query: 369 NSERINARLDELMHLPRLATLEVH 392
                   L EL  +P L TL+V 
Sbjct: 265 --------LLELGEIPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 24/166 (14%)

Query: 212 ISLRGCSI--HELPEGLECPRLEFLHIN-----PKDSLFDINNPCNFFTGMRKLRVVDFT 264
           +SL G  +    +    +   L  L+++      + +L  + + C       +L  ++ +
Sbjct: 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC------SRLDELNLS 176

Query: 265 RMQLL----LLPSSIDLLVNLQTLCLVECM--LDD---IAIIGKLKNLEILSFWGSGIV- 314
                    +  +   +   +  L L      L       ++ +  NL  L    S ++ 
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

Query: 315 -KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359
               +E   L  L+ L LS C+ +       +  +  L+ L +   
Sbjct: 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 276 DLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGH-LTKLRQLDLSNC 334
             L     +   +  +  +     L+ L+ L    + I ++ E L   L  L +L L+N 
Sbjct: 39  ATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 335 F--KLKVIAPNVISRLVRLEELYMSNC 359
              +L  + P  ++ L  L  L +   
Sbjct: 99  SLVELGDLDP--LASLKSLTYLCILRN 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	806
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	7e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.4 bits (148), Expect = 7e-11
 Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 1   MGSQKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALR 60
             + +   +  L  +E +   +          + +    +  +   G P  L    ++  
Sbjct: 174 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCE 233

Query: 61  NKSVPEWKSALQELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFML 111
            K+  +      +L     V  E +          S+K+L    L++   +
Sbjct: 234 PKTFEKMAQLNNKLESRGLVGVECI-------TPYSYKSL-AMALQRCVEV 276

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 9e-08
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 10/153 (6%)

Query: 206 LKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTR 265
           L     + L    I  L       +L  L +   + + +I+               +   
Sbjct: 240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLG-ANQISNISPLAGLTALTNLELNENQLE 298

Query: 266 MQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTK 325
                  S I  L NL  L L    + DI+ +  L  L+ L F  + +  +   L +LT 
Sbjct: 299 DI-----SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS-LANLTN 352

Query: 326 LRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358
           +  L   +  ++  + P  ++ L R+ +L +++
Sbjct: 353 INWLSAGHN-QISDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 29/184 (15%)

Query: 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCN---FFTGMRKLRVVDFTRMQL 268
           +SL G  + ++        L  L +         NN  +     +G+ KL  +     Q+
Sbjct: 224 LSLNGNQLKDIGTLASLTNLTDLDLA--------NNQISNLAPLSGLTKLTELKLGANQI 275

Query: 269 LLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQ 328
             +   +  L  L  L L E  L+DI+ I  LKNL  L+ + + I  +   +  LTKL++
Sbjct: 276 SNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 333

Query: 329 LDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLAT 388
           L  +N    KV   + ++ L  +  L   +  +               L  L +L R+  
Sbjct: 334 LFFANN---KVSDVSSLANLTNINWLSAGHNQIS-------------DLTPLANLTRITQ 377

Query: 389 LEVH 392
           L ++
Sbjct: 378 LGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 278 LVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKL 337
           L NL++L      + DI  +G L NL+ LS  G+ +  +   L  LT L  LDL+N  ++
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN-QI 253

Query: 338 KVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN 397
             +AP  +S L +L EL +    +               +  L  L  L  LE++     
Sbjct: 254 SNLAP--LSGLTKLTELKLGANQISN-------------ISPLAGLTALTNLELNENQLE 298

Query: 398 VLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLC-LEKLQ 456
            +      + L  L+     I D   + +L  KL  +   + K+  +  +  L  +  L 
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFANNKVSDVSSLANLTNINWLS 357

Query: 457 DVKNVLFDLDT-EGFSQLKHLHVQNN 481
              N + DL      +++  L + + 
Sbjct: 358 AGHNQISDLTPLANLTRITQLGLNDQ 383

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 279 VNLQTLCLVECMLDD---IAIIGKLKNLEILSFWGSGI-----VKLPEELGHLTKLRQLD 330
           +++Q+L +    L D     ++  L+  +++     G+       +   L     L +L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 331 LSNC----FKLKVIAPNVISRLVRLEELYMSNCFVEW 363
           L +       +  +   + +   ++++L + NC +  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 39/261 (14%), Positives = 92/261 (35%), Gaps = 20/261 (7%)

Query: 258 LRVVDFTRMQLL-LLPSSIDLLVNLQTLCLVECMLDDI--AIIGKLKNLEILSFWGSGIV 314
             ++D    ++  +       L NL TL L+   +  I       L  LE L    + + 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 315 KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERIN 374
           +LPE++     L++L +     +  +  +V + L ++  + +    ++       +    
Sbjct: 93  ELPEKMPK--TLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA---- 145

Query: 375 ARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLE-RLSWALFAIDDHETMRTL----KL 429
                   + +L+ + +   N   +P+G      E  L        D  +++ L    KL
Sbjct: 146 -----FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 430 KLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVD 489
            L+  SI +     + +  +L    L + K V           ++ +++ NN       +
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 490 SKERVPLDDAFPILESLNLYN 510
                  +        ++L++
Sbjct: 261 DFCPPGYNTKKASYSGVSLFS 281

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 280 NLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSN 333
            L TL   +  + DI+ +  L NL  +    + I  +   L + + L  + L+N
Sbjct: 174 KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 40/271 (14%), Positives = 78/271 (28%), Gaps = 33/271 (12%)

Query: 301 KNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCF 360
           + +       S + +   E     +++ +DLSN          ++S+  +L+ L +    
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL- 81

Query: 361 VEWDDEGPNSERINARLDELMHLPRLATLEVHV-KNDNVLPEGFFARKLERLSWALFAID 419
               D   N+         L     L  L +      +            RL     +  
Sbjct: 82  -RLSDPIVNT---------LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131

Query: 420 DHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQ 479
              T + +++ +  VS                   L   +  L   D     +     V 
Sbjct: 132 FDFTEKHVQVAVAHVSETI------------TQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 480 NNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCD 539
            +     ++ +            L+ L+L     +       L       LKT++V    
Sbjct: 180 LDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELG--EIPTLKTLQVFGIV 236

Query: 540 QLSNIFLLSAAKCLPRLERIAVINCRNIQEI 570
               + LL   + LP L+    INC +   I
Sbjct: 237 PDGTLQLL--KEALPHLQ----INCSHFTTI 261

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 7/138 (5%)

Query: 252 FTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGS 311
           +T   + R +D    ++ ++ +    L     +   +  +  +     L+ L+ L    +
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 73

Query: 312 GIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSE 371
            I ++ E L          +     L  +               + +         P + 
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA-------SLKSLTYLCILRNPVTN 126

Query: 372 RINARLDELMHLPRLATL 389
           + + RL  +  +P++  L
Sbjct: 127 KKHYRLYVIYKVPQVRVL 144

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 198 WEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRK 257
            E  +           L                L  L  N        N   +       
Sbjct: 226 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 285

Query: 258 LRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLP 317
           L  ++ +  +L+ LP+       L+ L      L ++      +NL+ L    + + + P
Sbjct: 286 LEELNVSNNKLIELPALPP---RLERLIASFNHLAEV--PELPQNLKQLHVEYNPLREFP 340

Query: 318 EELGHLTKLR 327
           +    +  LR
Sbjct: 341 DIPESVEDLR 350

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 1/115 (0%)

Query: 271 LPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLD 330
           L   +    +     L    L     +       +L+   S    L     ++ +L  L+
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLN 71

Query: 331 LSNCFKLKVIA-PNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLP 384
           LSN    ++    +++ +   L+ L +S   ++ + E    + +      L    
Sbjct: 72  LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	806
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.01
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.01
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.81
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.38

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2e-25  Score=158.89  Aligned_cols=79  Identities=22%  Similarity=0.316  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCC
Q ss_conf             69972499953698865870000456875898057678991000277765468613788863471105999678992568
Q 003639          254 GMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSN  333 (806)
Q Consensus       254 ~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~  333 (806)
                      .+.+|++|++++++++.+. .+..+++|++|++++|.++..+.++++++|++|++++|.+..++. ++.+++|+.|++.+
T Consensus        42 ~l~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~  119 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  119 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             HHCCCCEEECCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
T ss_conf             9578789989998987762-424589999896818817988633477110103013433322221-11233433344332


Q ss_pred             C
Q ss_conf             7
Q 003639          334 C  334 (806)
Q Consensus       334 ~  334 (806)
                      +
T Consensus       120 ~  120 (384)
T d2omza2         120 N  120 (384)
T ss_dssp             S
T ss_pred             C
T ss_conf             2

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3e-25  Score=157.96  Aligned_cols=95  Identities=22%  Similarity=0.233  Sum_probs=68.6

Q ss_pred             EECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCH
Q ss_conf             53698865870000456875898057678991000277765468613788863471105999678992568765542390
Q 003639          263 FTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAP  342 (806)
Q Consensus       263 L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~  342 (806)
                      +..+.+.... ....+.+|++|+++++.++..++++.+++|++|++++|.++.+|. ++++++|++|++++|. +..++.
T Consensus        29 l~~~~~~~~~-~~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~~  105 (384)
T d2omza2          29 LGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP  105 (384)
T ss_dssp             TTCSSTTSEE-CHHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG
T ss_pred             HCCCCCCCCC-CHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCCC-CCCCCC
T ss_conf             6777778863-988957878998999898776242458999989681881798863-3477110103013433-322221


Q ss_pred             HHHHCCCCCCEEEEECCCCC
Q ss_conf             44404878979980068545
Q 003639          343 NVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       343 ~~l~~L~~L~~L~l~~~~~~  362 (806)
                        ++++++|+.|++.++...
T Consensus       106 --l~~l~~L~~L~~~~~~~~  123 (384)
T d2omza2         106 --LANLTNLTGLTLFNNQIT  123 (384)
T ss_dssp             --GTTCTTCCEEECCSSCCC
T ss_pred             --CCCCCCCCCCCCCCCCCC
T ss_conf             --112334333443322222

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=2.8e-20  Score=129.57  Aligned_cols=96  Identities=19%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             CCEEEEEECCCCCCCCC-CCCCCCCCCEEEECCCCCCC--CHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCC
Q ss_conf             72499953698865870-00045687589805767899--1000277765468613788863471105999678992568
Q 003639          257 KLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSN  333 (806)
Q Consensus       257 ~Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~  333 (806)
                      .+++|++++|.++.+|+ ++..+.+|++|+++++.+..  +..|..+++|++|++++|.++.+|..+  ...++.|....
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~  109 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHE  109 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCH--HHHHHHHHCCC
T ss_conf             9798978499189869657604656523112344344523566527985578315687567676400--11132321024


Q ss_pred             CCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             7655423904440487897998
Q 003639          334 CFKLKVIAPNVISRLVRLEELY  355 (806)
Q Consensus       334 ~~~l~~~p~~~l~~L~~L~~L~  355 (806)
                      +. +..++...+.....+..+.
T Consensus       110 n~-l~~l~~~~~~~~~~~~~l~  130 (305)
T d1xkua_         110 NE-ITKVRKSVFNGLNQMIVVE  130 (305)
T ss_dssp             SC-CCBBCHHHHTTCTTCCEEE
T ss_pred             CC-HHHHHHHHHHCCCCCCCCC
T ss_conf             61-0234444540133110000

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.88  E-value=4.1e-19  Score=122.85  Aligned_cols=93  Identities=27%  Similarity=0.291  Sum_probs=39.6

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf             61799970789987899899997339993689984444598702316997249995369886587000045687589805
Q 003639          208 ECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV  287 (806)
Q Consensus       208 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~  287 (806)
                      ++++|+++++.+..+|+.  .++|++|                           ++++|.++.+|..+   .+|+.|+++
T Consensus        39 ~l~~LdLs~~~L~~lp~~--~~~L~~L---------------------------~Ls~N~l~~lp~~~---~~L~~L~l~   86 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL--PPHLESL---------------------------VASCNSLTELPELP---QSLKSLLVD   86 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC--CTTCSEE---------------------------ECCSSCCSSCCCCC---TTCCEEECC
T ss_pred             CCCEEEECCCCCCCCCCC--CCCCCEE---------------------------ECCCCCCCCCCCCH---HHHHHHHHH
T ss_conf             998999379998878898--7898889---------------------------89999796336203---320332665


Q ss_pred             CCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCCC
Q ss_conf             767899100027776546861378886347110599967899256876
Q 003639          288 ECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCF  335 (806)
Q Consensus       288 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~  335 (806)
                      ++.+...+.+  ...|++|++++|.+..+|. ++.+++|++|++.++.
T Consensus        87 ~n~l~~l~~l--p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          87 NNNLKALSDL--PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             SSCCSCCCSC--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC
T ss_pred             HCCCCHHHHH--CCCCCCCCCCCCCCCCCCC-HHHHCCCEEECCCCCC
T ss_conf             5143203210--2211111334554322210-0110131231135651

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=2.8e-19  Score=123.83  Aligned_cols=95  Identities=18%  Similarity=0.187  Sum_probs=72.9

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCC
Q ss_conf             97249995369886587000045687589805767899-10002777654686137888634711059996789925687
Q 003639          256 RKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNC  334 (806)
Q Consensus       256 ~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~  334 (806)
                      .++++|++++++++.+|+.   +++|++|+++++.++. |..   +.+|+.|++.++.++.++.   -...|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~---lp~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD---LPPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS---CCTTCCEEECCSS
T ss_pred             CCCCEEEECCCCCCCCCCC---CCCCCEEECCCCCCCCCCCC---HHHHHHHHHHHCCCCHHHH---HCCCCCCCCCCCC
T ss_conf             6998999379998878898---78988898999979633620---3320332665514320321---0221111133455


Q ss_pred             CCCCCCCHHHHHCCCCCCEEEEECCCCC
Q ss_conf             6554239044404878979980068545
Q 003639          335 FKLKVIAPNVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       335 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~  362 (806)
                      . +..+|.  ++.+++|++|++.++...
T Consensus       109 ~-l~~lp~--~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         109 Q-LEKLPE--LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             C-CSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             C-CCCCCC--HHHHCCCEEECCCCCCCC
T ss_conf             4-322210--011013123113565100

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.4e-19  Score=125.51  Aligned_cols=99  Identities=27%  Similarity=0.322  Sum_probs=68.1

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC-C-HHHCCCCCCCEEECCCCCCCCC-CHHCCCCCCCCEEECCC
Q ss_conf             7249995369886587000045687589805767899-1-0002777654686137888634-71105999678992568
Q 003639          257 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSGIVKL-PEELGHLTKLRQLDLSN  333 (806)
Q Consensus       257 ~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~  333 (806)
                      ..+.++-++.+++.+|..+.  .++++|++++|.++. + ..|.++++|++|+++++.+..+ |..|.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEECCCCCCCCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCC
T ss_conf             59999855999885198889--9979897849918986965760465652311234434452356652798557831568


Q ss_pred             CCCCCCCCHHHHHCCCCCCEEEEECCCC
Q ss_conf             7655423904440487897998006854
Q 003639          334 CFKLKVIAPNVISRLVRLEELYMSNCFV  361 (806)
Q Consensus       334 ~~~l~~~p~~~l~~L~~L~~L~l~~~~~  361 (806)
                      |. ++.+|..   ....++.|....+.+
T Consensus        89 n~-l~~l~~~---~~~~l~~L~~~~n~l  112 (305)
T d1xkua_          89 NQ-LKELPEK---MPKTLQELRVHENEI  112 (305)
T ss_dssp             SC-CSBCCSS---CCTTCCEEECCSSCC
T ss_pred             CC-CCCCCCC---HHHHHHHHHCCCCCH
T ss_conf             75-6767640---011132321024610

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.85  E-value=1.2e-22  Score=143.17  Aligned_cols=99  Identities=11%  Similarity=0.124  Sum_probs=87.5

Q ss_pred             CEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             32547999989999999996189899734489999999980597169999998835999568999999824998888899
Q 003639            5 KNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFEG   84 (806)
Q Consensus         5 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ig~~L~~~~~~~W~~~l~~l~~~~~~~~~~   84 (806)
                      ++|++++|+++|||+||+++++.....+..++++++||++|+|+|||++++|+.|+.++.++|.+..+.+.       ..
T Consensus       178 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~-------~~  250 (277)
T d2a5yb3         178 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLE-------SR  250 (277)
T ss_dssp             EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHH-------HH
T ss_pred             CEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-------CC
T ss_conf             16877889979999999998477667425679999999995899899999999865598999999999973-------48


Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             804457578873416892337999999
Q 003639           85 VPAEAYSTIELSFKNLKGEQLKKIFML  111 (806)
Q Consensus        85 ~~~~i~~~l~~sY~~Lp~~~lk~cfly  111 (806)
                      ...+|++++.+||++||++ ||+||-+
T Consensus       251 ~~~~v~~il~~sY~~L~~~-lk~c~~~  276 (277)
T d2a5yb3         251 GLVGVECITPYSYKSLAMA-LQRCVEV  276 (277)
T ss_dssp             CSSTTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCCHH-HHHHHHH
T ss_conf             6788999999988512699-9999973

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=1.3e-20  Score=131.48  Aligned_cols=106  Identities=24%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             CCCEEEEEECCCCCC---CCCCCCCCCCCCEEEECC-CCCC-C-CHHHCCCCCCCEEECCCCCCCCC-CHHCCCCCCCCE
Q ss_conf             972499953698865---870000456875898057-6789-9-10002777654686137888634-711059996789
Q 003639          256 RKLRVVDFTRMQLLL---LPSSIDLLVNLQTLCLVE-CMLD-D-IAIIGKLKNLEILSFWGSGIVKL-PEELGHLTKLRQ  328 (806)
Q Consensus       256 ~~Lr~L~L~~~~i~~---lp~~l~~l~~Lr~L~L~~-~~l~-~-~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~  328 (806)
                      .+++.|+++++.+..   +|..++++++|++|++++ +.+. . |..|+++++|++|++++|.+..+ +..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_conf             79889989899888888798478467533520202654333002431145420011020356434433222220111001


Q ss_pred             EECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCC
Q ss_conf             9256876554239044404878979980068545
Q 003639          329 LDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       329 L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~  362 (806)
                      +++..+.....+|.. +++++.|+.++++++.+.
T Consensus       130 l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCE
T ss_pred             CCCCCCCCCCCCCHH-HCCCCCCCEEECCCCCCC
T ss_conf             111224555568512-206740000002355335

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=6.4e-20  Score=127.48  Aligned_cols=130  Identities=17%  Similarity=0.246  Sum_probs=100.1

Q ss_pred             CCCCEEEECCCCCCC--CCCCCCHHHHCCCCCEEEEEEC-CCCC-CCCCCCCCCCCCCEEEECCCCCCC--CHHHCCCCC
Q ss_conf             973399936899844--4459870231699724999536-9886-587000045687589805767899--100027776
Q 003639          229 PRLEFLHINPKDSLF--DINNPCNFFTGMRKLRVVDFTR-MQLL-LLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKN  302 (806)
Q Consensus       229 ~~Lr~L~l~~~~~~~--~~~~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~  302 (806)
                      .++..|++.++....  .+  |..+ .++++|++|++++ |.+. .+|..++++.+|++|++++|.+..  +..+..+.+
T Consensus        50 ~~v~~L~L~~~~l~g~~~l--p~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPI--PSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC--CGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCC--CHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             7988998989988888879--8478-467533520202654333002431145420011020356434433222220111


Q ss_pred             CCEEECCCCCCC-CCCHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCC-CEEEEECCCCC
Q ss_conf             546861378886-3471105999678992568765542390444048789-79980068545
Q 003639          303 LEILSFWGSGIV-KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRL-EELYMSNCFVE  362 (806)
Q Consensus       303 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L-~~L~l~~~~~~  362 (806)
                      |++++++.+.+. .+|..+++++++++++++++.....+|.. +..+..+ +.+.+..+.+.
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred             HCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf             001111224555568512206740000002355335620312-1443112323102246435

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.4e-19  Score=120.82  Aligned_cols=177  Identities=23%  Similarity=0.260  Sum_probs=106.9

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf             17999707899878998999973399936899844445987023169972499953698865870000456875898057
Q 003639          209 CYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVE  288 (806)
Q Consensus       209 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~  288 (806)
                      ...++..++.++.+|+.+. ++++.|++.+|. ...+  +...|.++++|++|++++|.++.+|. ++.+++|++|++++
T Consensus        12 ~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~-i~~l--~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP-KDTTILHLSENL-LYTF--SLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC-TTCCEEECTTSC-CSEE--EGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred             CEEEECCCCCCCEECCCCC-CCCCEEECCCCC-CCCC--CHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
T ss_conf             8699806999886196757-688989884992-8985--97786345655221356654444311-11122321111122


Q ss_pred             CCCCC-CHHHCCCCCCCEEECCCCCCCCCCH-HCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCC
Q ss_conf             67899-1000277765468613788863471-105999678992568765542390444048789799800685454679
Q 003639          289 CMLDD-IAIIGKLKNLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDE  366 (806)
Q Consensus       289 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~  366 (806)
                      |.+.. +..+..+++|++|+++++.+..++. .+..+.++++|++.++. +..++...+..+++|+.++++++.+..   
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~---  162 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE---  162 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC---
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCEECCCCCCCCCCCHHCCCCCCCCCC---
T ss_conf             2221111121222222222222231101100112222111122124342-102212333221110000000156522---


Q ss_pred             CCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             998211000320138999985899996289867841
Q 003639          367 GPNSERINARLDELMHLPRLATLEVHVKNDNVLPEG  402 (806)
Q Consensus       367 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  402 (806)
                              .....+..+++|+.|+++++....+|..
T Consensus       163 --------~~~~~~~~l~~L~~L~Ls~N~L~~lp~~  190 (266)
T d1p9ag_         163 --------LPAGLLNGLENLDTLLLQENSLYTIPKG  190 (266)
T ss_dssp             --------CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             --------CCCCCCCCCCCCCEEECCCCCCCCCCHH
T ss_conf             --------3720013421242343013978556866

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-18  Score=119.10  Aligned_cols=91  Identities=26%  Similarity=0.257  Sum_probs=31.5

Q ss_pred             EEECCCCCCCCCCCCCCCCCCEEEECCCCCCC--CHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCC
Q ss_conf             95369886587000045687589805767899--1000277765468613788863471105999678992568765542
Q 003639          262 DFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKV  339 (806)
Q Consensus       262 ~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~  339 (806)
                      +.+++.++.+|..+.  +++++|+++++.++.  +..|.++++|++|++++|.++.+|. ++.+++|++|++++|. +..
T Consensus        16 ~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~-l~~   91 (266)
T d1p9ag_          16 NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ-LQS   91 (266)
T ss_dssp             ECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSC-CSS
T ss_pred             ECCCCCCCEECCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC-CCC
T ss_conf             806999886196757--688989884992898597786345655221356654444311-1112232111112222-211


Q ss_pred             CCHHHHHCCCCCCEEEEE
Q ss_conf             390444048789799800
Q 003639          340 IAPNVISRLVRLEELYMS  357 (806)
Q Consensus       340 ~p~~~l~~L~~L~~L~l~  357 (806)
                      .+.. +..+++|+.|+++
T Consensus        92 ~~~~-~~~l~~L~~L~l~  108 (266)
T d1p9ag_          92 LPLL-GQTLPALTVLDVS  108 (266)
T ss_dssp             CCCC-TTTCTTCCEEECC
T ss_pred             CCCC-CCCCCCCCCCCCC
T ss_conf             1112-1222222222222

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.6e-17  Score=111.16  Aligned_cols=217  Identities=17%  Similarity=0.176  Sum_probs=0.0

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCC-CCCCCCCCCCCCEEEECCC
Q ss_conf             999707899878998999973399936899844445987023169972499953698865-8700004568758980576
Q 003639          211 AISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTLCLVEC  289 (806)
Q Consensus       211 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~Lr~L~L~~~  289 (806)
                      .+..++..+..+|.... +.++.|++++| ....+  +...|.+++.|++|+++++.+.. .+..+..+..++.+....+
T Consensus        15 ~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N-~i~~i--~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP-AASQRIFLHGN-RISHV--PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCSSCCTTCC-TTCSEEECTTS-CCCEE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEECCCCCCCCCCCCCC-CCCCEEECCCC-CCCCC--CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99847999894497889-99888977488-17987--9778641421300001344543321112122222222222210


Q ss_pred             CCCC---CHHHCCCCCCCEEECCCCCCCCCCHH-CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf             7899---10002777654686137888634711-0599967899256876554239044404878979980068545467
Q 003639          290 MLDD---IAIIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD  365 (806)
Q Consensus       290 ~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~  365 (806)
                      ....   +..++++++|++|+++++.+..++.. +..+.+|+.+++.++. ++.++.+.+..+++|+.|++.++.+.   
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~---  166 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS---  166 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred             CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCC-CCCCCHHHHCCCCCHHHCCCCCCCCC---
T ss_conf             22354462010101027787568854432013533200012110200143-14458057404340502231417656---


Q ss_pred             CCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             99982110003201389999858999962898678410223443588854213762331578940386312445554434
Q 003639          366 EGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIK  445 (806)
Q Consensus       366 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~i~~l~  445 (806)
                              ......+..+++|+.+.+..+....++..                                     ++..++
T Consensus       167 --------~l~~~~f~~l~~L~~l~l~~N~l~~i~~~-------------------------------------~f~~l~  201 (284)
T d1ozna_         167 --------SVPERAFRGLHSLDRLLLHQNRVAHVHPH-------------------------------------AFRDLG  201 (284)
T ss_dssp             --------EECTTTTTTCTTCCEEECCSSCCCEECTT-------------------------------------TTTTCT
T ss_pred             --------CCCHHHHCCCCCCCHHHHHHCCCCCCCHH-------------------------------------HHHHHH
T ss_conf             --------62566654656341314211434662816-------------------------------------766532


Q ss_pred             CEEEEECCCCCCCCHHCCCCCCCCCCCCCEEEECCCC
Q ss_conf             3006420455780012002463455888677721689
Q 003639          446 DVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNP  482 (806)
Q Consensus       446 ~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  482 (806)
                      +++.|+++++.........+  ..+++|++|.+.+++
T Consensus       202 ~L~~L~l~~N~i~~~~~~~~--~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         202 RLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNP  236 (284)
T ss_dssp             TCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSC
T ss_pred             HCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEECCCC
T ss_conf             00023333352210000023--554656889811998

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.8e-17  Score=111.61  Aligned_cols=165  Identities=25%  Similarity=0.315  Sum_probs=123.4

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf             36617999707899878998999973399936899844445987023169972499953698865870000456875898
Q 003639          206 LKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC  285 (806)
Q Consensus       206 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~  285 (806)
                      +..++++.+.++.+..++....+++|++|++.++.. ..+  + . +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i-~~l--~-~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL-TDI--K-P-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCC--G-G-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred             HCCCCEEECCCCCCCCCHHHHHCCCCCEEECCCCCC-CCC--C-C-CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
T ss_conf             548458978279888744476489989876989602-586--0-1-135862120143333321222-121222111223


Q ss_pred             ECCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf             05767899100027776546861378886347110599967899256876554239044404878979980068545467
Q 003639          286 LVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD  365 (806)
Q Consensus       286 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~  365 (806)
                      ++++.+..+..+..+++++.++++++.+...+ .+..+++|+++++++|. +..++.  ++++++|++|++++|.+.   
T Consensus       119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~--l~~l~~L~~L~Ls~N~i~---  191 (210)
T d1h6ta2         119 LEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---  191 (210)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC-CCCCCC--CCCCCCCCEEECCCCCCC---
T ss_conf             45653221122011111222112223334543-10001332100134643-025645--367898999989799899---


Q ss_pred             CCCCCHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf             9998211000320138999985899996
Q 003639          366 EGPNSERINARLDELMHLPRLATLEVHV  393 (806)
Q Consensus       366 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~  393 (806)
                                .+..+..+++|+.|++++
T Consensus       192 ----------~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 ----------DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----------BCGGGTTCTTCSEEEEEE
T ss_pred             ----------CCHHHCCCCCCCEEECCC
T ss_conf             ----------872116999989997118

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=5.6e-17  Score=110.69  Aligned_cols=147  Identities=23%  Similarity=0.282  Sum_probs=84.4

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf             36617999707899878998999973399936899844445987023169972499953698865870000456875898
Q 003639          206 LKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC  285 (806)
Q Consensus       206 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~  285 (806)
                      ..+++.+.+.++.+..++....+++|++|++.+|.. ..+  + . +.++++|++|++++|.+..++. +..+++|++|+
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l-~~~--~-~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL-TDI--T-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCC--G-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC--C-C-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
T ss_conf             468789989999997752021378867575456556-676--4-0-1677522311112222222211-11122322211


Q ss_pred             ECCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCC
Q ss_conf             05767899100027776546861378886347110599967899256876554239044404878979980068545
Q 003639          286 LVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       286 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~  362 (806)
                      ++++.......+..+++|+.|++++|.+..++ .+..+++|+.|++.+|. +..++.  ++++++|++|+++++.+.
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~--l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKP--LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC-CCCCCC--CCCCCCCCEEECCCCCCC
T ss_conf             12222223210001223677643111100234-33321111112234555-567701--167998999978799799

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=7.3e-17  Score=110.02  Aligned_cols=147  Identities=23%  Similarity=0.328  Sum_probs=63.7

Q ss_pred             CCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEEE
Q ss_conf             99733999368998444459870231699724999536988658700004568758980576789910002777654686
Q 003639          228 CPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILS  307 (806)
Q Consensus       228 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~  307 (806)
                      ++++++|.+.++.. ..+  . . +..+++|++|++++|.++.+++ ++.+++|++|++++|.+...+.++.+++|+.|+
T Consensus        39 l~~l~~L~l~~~~i-~~l--~-~-l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGI-KSI--D-G-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCC-CCC--T-T-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             HCCCCEEECCCCCC-CCC--C-C-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             46878998999999-775--2-0-2137886757545655667640-167752231111222222221111122322211


Q ss_pred             CCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf             13788863471105999678992568765542390444048789799800685454679998211000320138999985
Q 003639          308 FWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLA  387 (806)
Q Consensus       308 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  387 (806)
                      ++++....++ .+..+++|+.|++++|. +..++.  +..+++|+.|++.++.+.             .+..++.+++|+
T Consensus       113 l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~~~~L~~L~l~~n~l~-------------~l~~l~~l~~L~  175 (199)
T d2omxa2         113 LFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLNFSSNQVT-------------DLKPLANLTTLE  175 (199)
T ss_dssp             CCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCC-------------CCGGGTTCTTCC
T ss_pred             CCCCCCCCCC-CCCHHHHHHHHHHHHHH-HCCCCC--CCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCC
T ss_conf             1222222321-00012236776431111-002343--332111111223455556-------------770116799899


Q ss_pred             EEEEEECCCC
Q ss_conf             8999962898
Q 003639          388 TLEVHVKNDN  397 (806)
Q Consensus       388 ~L~l~~~~~~  397 (806)
                      .|+++++...
T Consensus       176 ~L~ls~N~i~  185 (199)
T d2omxa2         176 RLDISSNKVS  185 (199)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCCCC
T ss_conf             9978799799

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.2e-16  Score=105.12  Aligned_cols=80  Identities=28%  Similarity=0.293  Sum_probs=33.3

Q ss_pred             CCCCCCCEEEECCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             04568758980576789910002777654686137888634711059996789925687655423904440487897998
Q 003639          276 DLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELY  355 (806)
Q Consensus       276 ~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~  355 (806)
                      ..+.+|++|++.+|.++..+.+..+++|++|++++|.+..++. +.++.+|+++++++|. ++.++.  ++++++|+.+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~~--l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSA--IAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCEEE
T ss_pred             HHCCCCCEEECCCCCCCCCHHHHCCCCCCEEECCCCEEECCCC-CCCCCCCCCCCCCCCC-CCCCCC--CCCCCCCCCCC
T ss_conf             7848868997779999766457448888376357853202543-1123343201211122-222222--22222221221


Q ss_pred             EECC
Q ss_conf             0068
Q 003639          356 MSNC  359 (806)
Q Consensus       356 l~~~  359 (806)
                      ++.+
T Consensus       114 l~~~  117 (227)
T d1h6ua2         114 LTST  117 (227)
T ss_dssp             CTTS
T ss_pred             CCCC
T ss_conf             2224

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.7e-17  Score=112.47  Aligned_cols=12  Identities=33%  Similarity=0.299  Sum_probs=3.9

Q ss_pred             CCCCCEEECCCC
Q ss_conf             776546861378
Q 003639          300 LKNLEILSFWGS  311 (806)
Q Consensus       300 L~~L~~L~L~~~  311 (806)
                      +++|++|++++|
T Consensus        70 c~~L~~L~L~~~   81 (284)
T d2astb2          70 CSKLQNLSLEGL   81 (284)
T ss_dssp             BCCCSEEECTTC
T ss_pred             CCCCCCCCCCCC
T ss_conf             877651452346

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=5.8e-15  Score=99.14  Aligned_cols=81  Identities=17%  Similarity=0.288  Sum_probs=36.0

Q ss_pred             HCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECC
Q ss_conf             16997249995369886587000045687589805767899100027776546861378886347110599967899256
Q 003639          253 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLS  332 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  332 (806)
                      ..+..|+.|++.++.++.++ .+..+++|++|++++|.+.....+..+.+|++++++++.++.++ .+..+++|+.+.++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             HHCCCCCEEECCCCCCCCCH-HHHCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
T ss_conf             78488689977799997664-57448888376357853202543112334320121112222222-22222222122122


Q ss_pred             CCC
Q ss_conf             876
Q 003639          333 NCF  335 (806)
Q Consensus       333 ~~~  335 (806)
                      ++.
T Consensus       116 ~~~  118 (227)
T d1h6ua2         116 STQ  118 (227)
T ss_dssp             TSC
T ss_pred             CCC
T ss_conf             244

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.5e-16  Score=105.02  Aligned_cols=75  Identities=27%  Similarity=0.312  Sum_probs=26.7

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCC
Q ss_conf             72499953698865870000456875898057678991000277765468613788863471105999678992568
Q 003639          257 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSN  333 (806)
Q Consensus       257 ~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~  333 (806)
                      .|+.|+++++.+..++ .+..+++|++|++++|.++....++.+++|++|++++|.++.+| .+..+++|+.|++.+
T Consensus        47 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             CCCEEECCCCCCCCCH-HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC
T ss_conf             8458978279888744-47648998987698960258601135862120143333321222-121222111223456

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1e-14  Score=97.71  Aligned_cols=102  Identities=21%  Similarity=0.281  Sum_probs=57.7

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC-C-HHHCCCCCCCEEECCCCCCCC-CCH-HCCCCCCCCEEECCCC
Q ss_conf             49995369886587000045687589805767899-1-000277765468613788863-471-1059996789925687
Q 003639          259 RVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSGIVK-LPE-ELGHLTKLRQLDLSNC  334 (806)
Q Consensus       259 r~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~l~~-lp~-~i~~L~~L~~L~l~~~  334 (806)
                      ++++.++..++.+|..+.  .++++|+++++.++. + ..|.++++|++|++++|.+.. ++. .+..+++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEECCCCCCCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf             999981899887688889--988999876991896496686146432321102211242010011222222222111112


Q ss_pred             CCCCCCCHHHHHCCCCCCEEEEECCCCC
Q ss_conf             6554239044404878979980068545
Q 003639          335 FKLKVIAPNVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       335 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~  362 (806)
                      ..+...+.+.+..+++|+++++.++.+.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf             3432222221222222222234211112

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.3e-17  Score=110.79  Aligned_cols=11  Identities=36%  Similarity=0.615  Sum_probs=3.4

Q ss_pred             CCCEEEEECCC
Q ss_conf             75399871389
Q 003639          676 NLTRLILRKCP  686 (806)
Q Consensus       676 ~L~~L~l~~C~  686 (806)
                      +|++|++++|+
T Consensus       201 ~L~~L~L~~C~  211 (284)
T d2astb2         201 YLQHLSLSRCY  211 (284)
T ss_dssp             TCCEEECTTCT
T ss_pred             CCCEEECCCCC
T ss_conf             68779899999

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.4e-13  Score=89.89  Aligned_cols=77  Identities=14%  Similarity=0.213  Sum_probs=26.9

Q ss_pred             CEEEEEECCCCCCCCC-CCCCCCCCCEEEECCCCCCC---CHHHCCCCCCCEEECCCC-CCCCCC-HHCCCCCCCCEEEC
Q ss_conf             2499953698865870-00045687589805767899---100027776546861378-886347-11059996789925
Q 003639          258 LRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD---IAIIGKLKNLEILSFWGS-GIVKLP-EELGHLTKLRQLDL  331 (806)
Q Consensus       258 Lr~L~L~~~~i~~lp~-~l~~l~~Lr~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~-~l~~lp-~~i~~L~~L~~L~l  331 (806)
                      +++|++++|.+..+|. .+.++++|++|+++++.+..   +..+..+++++++.+..+ .+..++ ..+..+++|+++++
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l  110 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  110 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE
T ss_pred             CCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             89998769918964966861464323211022112420100112222222221111123432222221222222222234


Q ss_pred             CCC
Q ss_conf             687
Q 003639          332 SNC  334 (806)
Q Consensus       332 ~~~  334 (806)
                      .++
T Consensus       111 ~~~  113 (242)
T d1xwdc1         111 SNT  113 (242)
T ss_dssp             ESC
T ss_pred             CHH
T ss_conf             211

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=96.27  Aligned_cols=124  Identities=19%  Similarity=0.172  Sum_probs=57.8

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC-CH-HHCCCCCC
Q ss_conf             99997339993689984444598702316997249995369886587000045687589805767899-10-00277765
Q 003639          226 LECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IA-IIGKLKNL  303 (806)
Q Consensus       226 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~-~~-~i~~L~~L  303 (806)
                      .++.++|.|++.++. +..+  + ..+..+.+|++|++++|.+..++ .+..+++|++|++++|.+.. ++ .+..+++|
T Consensus        15 ~n~~~lr~L~L~~n~-I~~i--~-~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          15 TNAVRDRELDLRGYK-IPVI--E-NLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             ECTTSCEEEECTTSC-CCSC--C-CGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             CCCCCCCEEECCCCC-CCCC--C-CCCCCCCCCCEEECCCCCCCCCC-CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             685748489788997-8865--7-62004145998989799787647-74457613064310213457776322334534


Q ss_pred             CEEECCCCCCCCCCH--HCCCCCCCCEEECCCCCCCCCCCH---HHHHCCCCCCEEE
Q ss_conf             468613788863471--105999678992568765542390---4440487897998
Q 003639          304 EILSFWGSGIVKLPE--ELGHLTKLRQLDLSNCFKLKVIAP---NVISRLVRLEELY  355 (806)
Q Consensus       304 ~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~---~~l~~L~~L~~L~  355 (806)
                      ++|++++|.++.++.  .+..+++|++|++++|. +...+.   .+++.+++|+.|+
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCC-CCCCCCHHHHHHHHCCCCCEEC
T ss_conf             4342030001665421100136532066407996-3456106999998789958337

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-14  Score=97.30  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=81.3

Q ss_pred             HCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHH-CCCCCCCCEEEC
Q ss_conf             1699724999536988658700004568758980576789910002777654686137888634711-059996789925
Q 003639          253 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDL  331 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l  331 (806)
                      .+...+|.|++++|.++.++..+..+.+|++|++++|.++..+.+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             68574848978899788657620041459989897997876477445761306431021345777632233453443420


Q ss_pred             CCCCCCCCCCH-HHHHCCCCCCEEEEECCCCC
Q ss_conf             68765542390-44404878979980068545
Q 003639          332 SNCFKLKVIAP-NVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       332 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~  362 (806)
                      ++|. +..++. ..+..+++|++|++++|.+.
T Consensus        95 ~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          95 TNNS-LVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCCC-CCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             3000-166542110013653206640799634

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=2e-13  Score=90.34  Aligned_cols=103  Identities=16%  Similarity=0.140  Sum_probs=45.9

Q ss_pred             CCEEEEEECCCCCC-C-CCCCCCCCCCCEEEECCCCCCC--CHHHCCCCCCCEEECCCCCCCCCCHH-CCCCCCCCEEEC
Q ss_conf             72499953698865-8-7000045687589805767899--10002777654686137888634711-059996789925
Q 003639          257 KLRVVDFTRMQLLL-L-PSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDL  331 (806)
Q Consensus       257 ~Lr~L~L~~~~i~~-l-p~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l  331 (806)
                      .+++|++++|.+.. + +..+..+.+|+.|+++++.+..  +..+..+++|++|++++|.++.+|.. |.++++|++|++
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf             87889848987755302002578762721301363221212122211222210100355344349799807974655245


Q ss_pred             CCCCCCCCCCHHHHHCCCCCCEEEEECCC
Q ss_conf             68765542390444048789799800685
Q 003639          332 SNCFKLKVIAPNVISRLVRLEELYMSNCF  360 (806)
Q Consensus       332 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~  360 (806)
                      +++. ++.++.+.+..+++|++++++++.
T Consensus       110 ~~N~-l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCC-CCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf             7745-353597785687533420003644

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=2.4e-13  Score=89.93  Aligned_cols=101  Identities=22%  Similarity=0.248  Sum_probs=53.8

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCC
Q ss_conf             49995369886587000045687589805767899-10002777654686137888634711059996789925687655
Q 003639          259 RVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKL  337 (806)
Q Consensus       259 r~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l  337 (806)
                      |+|++++|.++.++. ++.+.+|++|++++|.++. |+.++.+++|++|++++|.++.+| .+..+++|++|++++|. +
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-L   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-C
T ss_pred             CEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCC-C
T ss_conf             989868998988710-10589889897978716865215655431354532432112357-41233555768888986-5


Q ss_pred             CCCCH-HHHHCCCCCCEEEEECCCCC
Q ss_conf             42390-44404878979980068545
Q 003639          338 KVIAP-NVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       338 ~~~p~-~~l~~L~~L~~L~l~~~~~~  362 (806)
                      ..++. +.++.+++|+.|+++++.+.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf             88888256537999999989799688

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4e-16  Score=105.76  Aligned_cols=105  Identities=21%  Similarity=0.284  Sum_probs=47.0

Q ss_pred             CCEEEEEECCCCCC--CCCCCCCCCCCCEEEECCCCCCC------CHHHCCCCCCCEEECCCCCCCC-----CCHHCC-C
Q ss_conf             72499953698865--87000045687589805767899------1000277765468613788863-----471105-9
Q 003639          257 KLRVVDFTRMQLLL--LPSSIDLLVNLQTLCLVECMLDD------IAIIGKLKNLEILSFWGSGIVK-----LPEELG-H  322 (806)
Q Consensus       257 ~Lr~L~L~~~~i~~--lp~~l~~l~~Lr~L~L~~~~l~~------~~~i~~L~~L~~L~L~~~~l~~-----lp~~i~-~  322 (806)
                      .|+.||++++.+..  +..-+..++++++|++++|.++.      ...+..+++|++|++++|.+..     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             87779820895886899999976779999982899998899999999985399988897959859728999999998437


Q ss_pred             CCCCCEEECCCCCCCCCCCH----HHHHCCCCCCEEEEECCCCC
Q ss_conf             99678992568765542390----44404878979980068545
Q 003639          323 LTKLRQLDLSNCFKLKVIAP----NVISRLVRLEELYMSNCFVE  362 (806)
Q Consensus       323 L~~L~~L~l~~~~~l~~~p~----~~l~~L~~L~~L~l~~~~~~  362 (806)
                      ..+|++|++++|. ++....    ..+...++|++|+++++.+.
T Consensus        83 ~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCC-CCCCCCCCCCCHHHCCCCCCCCCCCCCCCH
T ss_conf             8877887788877-543221012110000343200244433202

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=7.1e-13  Score=87.22  Aligned_cols=118  Identities=19%  Similarity=0.239  Sum_probs=88.9

Q ss_pred             CEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEEECCCC
Q ss_conf             39993689984444598702316997249995369886587000045687589805767899100027776546861378
Q 003639          232 EFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGS  311 (806)
Q Consensus       232 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L~L~~~  311 (806)
                      |+|++.++... .+  + . +..+..|++|++++|.++.+|+.++.+++|++|++++|.++..+.++.+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l--~-~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VL--C-H-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SC--C-C-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             CEEECCCCCCC-CC--C-C-CCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             98986899898-87--1-0-105898898979787168652156554313545324321123574123355576888898


Q ss_pred             CCCCCCH--HCCCCCCCCEEECCCCCCCCC---CCHHHHHCCCCCCEEE
Q ss_conf             8863471--105999678992568765542---3904440487897998
Q 003639          312 GIVKLPE--ELGHLTKLRQLDLSNCFKLKV---IAPNVISRLVRLEELY  355 (806)
Q Consensus       312 ~l~~lp~--~i~~L~~L~~L~l~~~~~l~~---~p~~~l~~L~~L~~L~  355 (806)
                      .+..+|.  .+..+++|++|+++++. +..   .+...+..+++|+.+.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~Ll  123 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  123 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCCHHHHHHHHCCCCCEEE
T ss_conf             65888882565379999999897996-8868267999999896731383

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=7.4e-13  Score=87.11  Aligned_cols=123  Identities=20%  Similarity=0.248  Sum_probs=84.1

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCC-CCCCCCCCCCCEEEECC
Q ss_conf             79997078998789989999733999368998444459870231699724999536988658-70000456875898057
Q 003639          210 YAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE  288 (806)
Q Consensus       210 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~~  288 (806)
                      +.+..+++.+..+|+.. .++++.|++.+|.....+  +...|.++.+|+.|++++|.+..+ +..+..+.+|++|++++
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~--~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRIS--SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBC--CSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEECCCCCCCCCCC-CCCCCEEEECCCCCCCCC--CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf             99997089967029898-978788984898775530--200257876272130136322121212221122221010035


Q ss_pred             CCCCC--CHHHCCCCCCCEEECCCCCCCCCCHH-CCCCCCCCEEECCCCC
Q ss_conf             67899--10002777654686137888634711-0599967899256876
Q 003639          289 CMLDD--IAIIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCF  335 (806)
Q Consensus       289 ~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~  335 (806)
                      +.+..  +..|.++++|++|+|++|.++.+|.+ |..+++|++|+++++.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf             53443497998079746552457745353597785687533420003644

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-15  Score=102.71  Aligned_cols=107  Identities=20%  Similarity=0.194  Sum_probs=75.9

Q ss_pred             CCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCC-----CCCCCCCCCCCCEEEECCCCCCC--CHHHC----
Q ss_conf             73399936899844445987023169972499953698865-----87000045687589805767899--10002----
Q 003639          230 RLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-----LPSSIDLLVNLQTLCLVECMLDD--IAIIG----  298 (806)
Q Consensus       230 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~l~~l~~Lr~L~L~~~~l~~--~~~i~----  298 (806)
                      +|+.|++.++.....-  -..++..++++++|++++|.++.     +...+..+++|++|++++|.+..  ...+.    
T Consensus         3 ~l~~ld~~~~~i~~~~--~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCHHH--HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf             8777982089588689--99999767799999828999988999999999853999888979598597289999999984


Q ss_pred             -CCCCCCEEECCCCCCCC-----CCHHCCCCCCCCEEECCCCCCCCC
Q ss_conf             -77765468613788863-----471105999678992568765542
Q 003639          299 -KLKNLEILSFWGSGIVK-----LPEELGHLTKLRQLDLSNCFKLKV  339 (806)
Q Consensus       299 -~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~  339 (806)
                       ...+|++|++++|.++.     ++..+..+++|++|++++|. +..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~  126 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGD  126 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHH
T ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC-CHH
T ss_conf             3788778877888775432210121100003432002444332-023

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=6.9e-14  Score=93.01  Aligned_cols=105  Identities=19%  Similarity=0.225  Sum_probs=43.5

Q ss_pred             HCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEEC
Q ss_conf             16997249995369886587000045687589805767899-10002777654686137888634711059996789925
Q 003639          253 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL  331 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  331 (806)
                      ..+++|++|++++|.++.++ .+..+++|++|++++|.++. +..+..+.+|++|++++|.++.++ .+..+++|++|++
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE
T ss_pred             HCCCCCCEEECCCCCCCCCC-CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
T ss_conf             62604615199446899864-424782535734135343210000332212333333332222222-2222223411123


Q ss_pred             CCCCCCCCCCH-HHHHCCCCCCEEEEECCC
Q ss_conf             68765542390-444048789799800685
Q 003639          332 SNCFKLKVIAP-NVISRLVRLEELYMSNCF  360 (806)
Q Consensus       332 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~  360 (806)
                      ++|. +..++. ..+..+++|+.|+++++.
T Consensus       123 ~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SEEE-CCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             CCCH-HCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf             4102-1255422123677763023427984

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=2.1e-13  Score=90.26  Aligned_cols=104  Identities=22%  Similarity=0.284  Sum_probs=58.9

Q ss_pred             CCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEE
Q ss_conf             99973399936899844445987023169972499953698865870000456875898057678991000277765468
Q 003639          227 ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEIL  306 (806)
Q Consensus       227 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~l~~~~~i~~L~~L~~L  306 (806)
                      .+++|+.|++.++. ...+  + . +..+++|++|++++|.+..+|.....+++|++|++++|.++.++.+..+++|++|
T Consensus        46 ~L~~L~~L~Ls~n~-I~~i--~-~-l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L  120 (198)
T d1m9la_          46 TLKACKHLALSTNN-IEKI--S-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             HTTTCCEEECSEEE-ESCC--C-C-HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEE
T ss_pred             CCCCCCEEECCCCC-CCCC--C-C-CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             26046151994468-9986--4-4-2478253573413534321000033221233333333222222222222234111


Q ss_pred             ECCCCCCCCCCH--HCCCCCCCCEEECCCCC
Q ss_conf             613788863471--10599967899256876
Q 003639          307 SFWGSGIVKLPE--ELGHLTKLRQLDLSNCF  335 (806)
Q Consensus       307 ~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~  335 (806)
                      ++++|.++.++.  .+..+++|++|++++|.
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             CCCCCHHCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf             2341021255422123677763023427984

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.01  E-value=1.1e-10  Score=74.76  Aligned_cols=11  Identities=27%  Similarity=0.398  Sum_probs=4.6

Q ss_pred             HCCCCEEEEEC
Q ss_conf             02456488804
Q 003639          700 FEHLQHLEIRH  710 (806)
Q Consensus       700 l~~L~~L~i~~  710 (806)
                      .+.|+.|++++
T Consensus       301 ~~~L~~L~l~~  311 (344)
T d2ca6a1         301 MPDLLFLELNG  311 (344)
T ss_dssp             CTTCCEEECTT
T ss_pred             CCCCCEEECCC
T ss_conf             89999897879

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.5e-09  Score=68.19  Aligned_cols=97  Identities=22%  Similarity=0.192  Sum_probs=40.6

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCEEEECCCC-CCC--CHHHCCCCCCCEEECCCCCCCCCCH-HCCCCCCCCEEECCCCCC
Q ss_conf             995369886587000045687589805767-899--1000277765468613788863471-105999678992568765
Q 003639          261 VDFTRMQLLLLPSSIDLLVNLQTLCLVECM-LDD--IAIIGKLKNLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFK  336 (806)
Q Consensus       261 L~L~~~~i~~lp~~l~~l~~Lr~L~L~~~~-l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~  336 (806)
                      ++.+++.+...|..+..+.+|+.|++.+++ ++.  +..|..+++|+.|++++|+++.++. .|..+++|++|+++++. 
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-   91 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-   91 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-
T ss_pred             EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCC-
T ss_conf             9852899765860025765657431689866443692122566666721620212477420111245543333226787-


Q ss_pred             CCCCCHHHHHCCCCCCEEEEECC
Q ss_conf             54239044404878979980068
Q 003639          337 LKVIAPNVISRLVRLEELYMSNC  359 (806)
Q Consensus       337 l~~~p~~~l~~L~~L~~L~l~~~  359 (806)
                      ++.+|.+.+. ..+|+.|+++++
T Consensus        92 l~~l~~~~~~-~~~l~~L~L~~N  113 (156)
T d2ifga3          92 LESLSWKTVQ-GLSLQELVLSGN  113 (156)
T ss_dssp             CSCCCSTTTC-SCCCCEEECCSS
T ss_pred             CCCCCHHHHC-CCCCCCCCCCCC
T ss_conf             8515745633-532124335798

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.4e-09  Score=66.19  Aligned_cols=83  Identities=19%  Similarity=0.088  Sum_probs=53.1

Q ss_pred             HCCCCCEEEEEECC-CCCCCC-CCCCCCCCCCEEEECCCCCCC--CHHHCCCCCCCEEECCCCCCCCCCHHCCCCCCCCE
Q ss_conf             16997249995369-886587-000045687589805767899--10002777654686137888634711059996789
Q 003639          253 TGMRKLRVVDFTRM-QLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQ  328 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~-~i~~lp-~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~  328 (806)
                      ..+++|+.|++.++ .++.++ ..|..+++|+.|+++++.++.  +..|..+++|++|+|++|.++.+|.++-...+|++
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~  107 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE  107 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred             CCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCCCCCC
T ss_conf             57656574316898664436921225666667216202124774201112455433332267878515745633532124


Q ss_pred             EECCCCC
Q ss_conf             9256876
Q 003639          329 LDLSNCF  335 (806)
Q Consensus       329 L~l~~~~  335 (806)
                      |+++++.
T Consensus       108 L~L~~Np  114 (156)
T d2ifga3         108 LVLSGNP  114 (156)
T ss_dssp             EECCSSC
T ss_pred             CCCCCCC
T ss_conf             3357986

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.81  E-value=3.2e-09  Score=66.34  Aligned_cols=37  Identities=8%  Similarity=0.038  Sum_probs=14.7

Q ss_pred             HCCCCCEEEEEECCCCCC-----CCCCCCCCCCCCEEEECCC
Q ss_conf             169972499953698865-----8700004568758980576
Q 003639          253 TGMRKLRVVDFTRMQLLL-----LPSSIDLLVNLQTLCLVEC  289 (806)
Q Consensus       253 ~~l~~Lr~L~L~~~~i~~-----lp~~l~~l~~Lr~L~L~~~  289 (806)
                      .....++.|++++|.+..     +...+...++|+.++++++
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~   69 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI   69 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred             HHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             638997889784983778999999999985899888888777

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=8e-08  Score=58.33  Aligned_cols=63  Identities=22%  Similarity=0.123  Sum_probs=29.7

Q ss_pred             HHCCCCCEEEEEECCCCCCCC---CCCCCCCCCCEEEECCCCCCCCHH--HCCCCCCCEEECCCCCCC
Q ss_conf             316997249995369886587---000045687589805767899100--027776546861378886
Q 003639          252 FTGMRKLRVVDFTRMQLLLLP---SSIDLLVNLQTLCLVECMLDDIAI--IGKLKNLEILSFWGSGIV  314 (806)
Q Consensus       252 ~~~l~~Lr~L~L~~~~i~~lp---~~l~~l~~Lr~L~L~~~~l~~~~~--i~~L~~L~~L~L~~~~l~  314 (806)
                      +.++..|++|++++|.++.++   ..+..+++|++|++++|.++..+.  .....+|+.|++.+|.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCC
T ss_conf             97487878863777666677315889865885610004357213423442220331042664899767

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.7e-06  Score=49.59  Aligned_cols=84  Identities=25%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             CCCCCCCCCCCCEEEECCCCCCC----CHHHCCCCCCCEEECCCCCCCCCCH-HCCCCCCCCEEECCCCCCCCCCC----
Q ss_conf             87000045687589805767899----1000277765468613788863471-10599967899256876554239----
Q 003639          271 LPSSIDLLVNLQTLCLVECMLDD----IAIIGKLKNLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFKLKVIA----  341 (806)
Q Consensus       271 lp~~l~~l~~Lr~L~L~~~~l~~----~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p----  341 (806)
                      ++.....+++|++|++++|.++.    +..+..+++|+.|++++|.++.++. ...+..+|+.|++.++. +....    
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np-l~~~~~~~~  135 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS-LSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST-TSSSSSSHH
T ss_pred             HHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCC-CCCCCCCCH
T ss_conf             0788974878788637776666773158898658856100043572134234422203310426648997-676766615


Q ss_pred             ---HHHHHCCCCCCEEE
Q ss_conf             ---04440487897998
Q 003639          342 ---PNVISRLVRLEELY  355 (806)
Q Consensus       342 ---~~~l~~L~~L~~L~  355 (806)
                         ..++..+++|+.|+
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHHCCCCCEEC
T ss_conf             69999999889978799

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.26  E-value=0.00037  Score=37.37  Aligned_cols=59  Identities=12%  Similarity=0.117  Sum_probs=21.1

Q ss_pred             CCCCCCCCEEEECCCCCCC--C----HHHCCCCCCCEEECCCCCCCC-----CCHHCCCCCCCCEEECCC
Q ss_conf             0045687589805767899--1----000277765468613788863-----471105999678992568
Q 003639          275 IDLLVNLQTLCLVECMLDD--I----AIIGKLKNLEILSFWGSGIVK-----LPEELGHLTKLRQLDLSN  333 (806)
Q Consensus       275 l~~l~~Lr~L~L~~~~l~~--~----~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~  333 (806)
                      +....+|++|++++|.+..  .    ..+...+.|++|++++|.+..     +-..+..-+.|++|++++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf             7637764540120156215679887531000234330033010214599999999998489389877887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.25  E-value=0.00021  Score=38.74  Aligned_cols=12  Identities=17%  Similarity=0.188  Sum_probs=4.1

Q ss_pred             CCCCEEEECCCC
Q ss_conf             687589805767
Q 003639          279 VNLQTLCLVECM  290 (806)
Q Consensus       279 ~~Lr~L~L~~~~  290 (806)
                      +.|++|++++|.
T Consensus        72 ~~L~~L~L~~n~   83 (167)
T d1pgva_          72 PSLRVLNVESNF   83 (167)
T ss_dssp             SSCCEEECCSSB
T ss_pred             CCCCCEEEEHHH
T ss_conf             343300330102

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.88  E-value=0.00091  Score=35.16  Aligned_cols=19  Identities=5%  Similarity=0.134  Sum_probs=8.1

Q ss_pred             CCCCCCCCCEEEECCCCCC
Q ss_conf             0004568758980576789
Q 003639          274 SIDLLVNLQTLCLVECMLD  292 (806)
Q Consensus       274 ~l~~l~~Lr~L~L~~~~l~  292 (806)
                      .+...++|+.|++++|.+.
T Consensus        41 al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCC
T ss_pred             HHHCCCCCCEEECCCCCCC
T ss_conf             8841982574301589611

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.38  E-value=0.0027  Score=32.49  Aligned_cols=12  Identities=0%  Similarity=0.058  Sum_probs=4.1

Q ss_pred             CCCEEEEEECCC
Q ss_conf             972499953698
Q 003639          256 RKLRVVDFTRMQ  267 (806)
Q Consensus       256 ~~Lr~L~L~~~~  267 (806)
                      .+|+.|++++|.
T Consensus        46 ~~L~~L~Ls~n~   57 (166)
T d1io0a_          46 TYVKKFSIVGTR   57 (166)
T ss_dssp             CSCCEEECTTSC
T ss_pred             CCCCEEECCCCC
T ss_conf             825743015896