Citrus Sinensis ID: 003645

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-----

MQGIEVGSLMASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNLASELEEDSPDKGSDLSN

cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccEEEEEEEEccccHHHHHHHHHHHccccccccEEEEEEEEEEccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHcccccEEEEccccccHHHHcccccccccccccHHHHHHcccccccEEEEEEEEccccccccccccccccccccccccc

cccEEEEcccccccEEEccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccEEEEEEEccccccHHHHHHHHHHccccccccEEEEEEEEEEcccccccEEEEccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccHHHHHHHHHHHHHccEEEEEEEcccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHcccccEEEEEcccccccccccccHHHccccccccHHcEcccccccEEEEEEEEccccccccccccccccccccccccc

MQGIEVGSLMAsvghacpapmkptsngvfqgdspldfaLPLAILQICLVILLTRGLAfilrplrqprviaeitggillgpsalgrserflqavfppksqtVLDTLANLGLIFFMFLVGleldpkslrQTGKKALGIAIAGISLpfalgigssfLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALsgsgqsslvPVWVFLSGCVFVICltlfvpptfkwmarqchegepveeTYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVlvpkegpfaNALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKParrarvadykhrtverknsKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRnglpfwnrgrqsnpnHIVVAFEAFQQLsrvsvrpmtaissmsDMHEDICTTAESKRAAIIILpfhkhqrldgslettrsdfRWVNqrvlkhapcsvgilidrglggttqvsasNVSYTITVLFFGGRDDREALACGarmaehpgisFIVIRFLLAADaigntvsvdmagnasmdEEVLSEFKlktsrngsvryeeRLVRNTAETIAVIREVSRCNLllvgrmpdGELALALSTrsdclelgpvgslltsleFSTASVLIIQQYSDRVFMNLASeleedspdkgsdlsn

MQGIEVGSLMASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARrarvadykhrtverknskaQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPfhkhqrldgsLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEfklktsrngsvryeerlvrntaetiaVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNLASeleedspdkgsdlsn

MQGIEVGSLMASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRmamsaaavndvaawillalavalsgsgqsslvPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNLASELEEDSPDKGSDLSN

***************************VFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAI******HEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAG********************SVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNL*****************

*********MASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPA*********************FRILACFHSARNIPSTINLL*************VYALHLMELSERSSA************************HIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ***********DFRWVNQRVLKHAPCSVGILIDRGLGG*****ASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA*****************MDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPD***********DCLELGPVGSLLTSLEFSTASVLIIQ***************************

**GIEVGSLMASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKA*************SNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAAD*******VDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDR**********************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		805	2.2.26 [Sep-21-2011]
Q9FFR9		810	Cation/H(+) antiporter 18	yes	no	0.978	0.972	0.707	0.0
Q9SUQ7		820	Cation/H(+) antiporter 17	no	no	0.957	0.940	0.647	0.0
Q9LUN4		800	Cation/H(+) antiporter 19	no	no	0.976	0.982	0.623	0.0
Q1HDT3		811	Cation/H(+) antiporter 16	no	no	0.946	0.939	0.574	0.0
Q9SIT5		821	Cation/H(+) antiporter 15	no	no	0.950	0.931	0.483	0.0
Q9M353		842	Cation/H(+) antiporter 20	no	no	0.940	0.899	0.506	0.0
Q8VYD4		867	Cation/H(+) antiporter 23	no	no	0.926	0.860	0.370	1e-130
Q9SKA9		832	Cation/H(+) antiporter 21	no	no	0.926	0.896	0.342	1e-115
Q9LMJ1		829	Cation/H(+) antiporter 14	no	no	0.960	0.932	0.324	1e-109
O22920		831	Cation/H(+) symporter 13	no	no	0.931	0.902	0.314	8e-96

>sp\|Q9FFR9\|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1	Back alignment and function desciption

 Score = 1118 bits (2893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/804 (70%), Positives = 667/804 (82%), Gaps = 16/804 (1%)

Query: 15  HACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITG 74
            ACPAPMK TSNGVFQGD+P+DFALPLAILQI +VI+LTR LA++LRPLRQPRVIAE+ G
Sbjct: 7   KACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVIG 66

Query: 75  GILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKAL 134
           GI+LGPS LGRS+ FL AVFP KS TVL+TLANLGL+FF+FL GLE+D K+LR+TGKKAL
Sbjct: 67  GIMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRRTGKKAL 126

Query: 135 GIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLL 194
           GIA+AGI+LPFALGIGSSF+L+ TISKGV+ST+FLVFMGVALSITAFPVLARILAELKLL
Sbjct: 127 GIALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARILAELKLL 186

Query: 195 TADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPT 254
           T ++GR+AMSAAAVNDVAAWILLALA+ALSGS  S LV +WVFLSGC FVI  +  +PP 
Sbjct: 187 TTEIGRLAMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGASFIIPPI 246

Query: 255 FKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANA 314
           F+W++R+CHEGEP+EETY+CATLA VL  GFITDAIGIH+MFGAFVVGVL+PKEGPFA A
Sbjct: 247 FRWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGPFAGA 306

Query: 315 LVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS 374
           LVEKVEDLVSG+FLPLYFV+SGLKTN+ATIQG QSWGLL LV  TAC GKI+GT  VSL+
Sbjct: 307 LVEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLGVSLA 366

Query: 375 FKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMA 434
           FK+P+REA+ LG LMNTKGLVELIVLNIGKDRKVLNDQ FAIM+LMA+ TTF+TTP+VMA
Sbjct: 367 FKIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPVVMA 426

Query: 435 VYKPARRARV-ADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLC 493
           VYKPARRA+   +YKHR VER+N+  Q RIL CFH A +IPS INLLEA RGI+K EGLC
Sbjct: 427 VYKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKGEGLC 486

Query: 494 VYALHLMELSERSSAILMVHKARRNGLPFWN-RGRQSNPNHIVVAFEAFQQLSRVSVRPM 552
           VYALHL ELSERSSAILMVHK R+NG+PFWN RG  ++ + +VVAF+AFQQLSRV+VRPM
Sbjct: 487 VYALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSRVNVRPM 546

Query: 553 TAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS 612
           TAISSMSD+HEDICTTA  K+AAI+ILPFHKHQ+LDGSLETTR D+RWVN+RVL  APCS
Sbjct: 547 TAISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVLLQAPCS 606

Query: 613 VGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 672
           VGI +DRGLGG++QVSA +VSY++ VLFFGG DDREALA G RMAEHPGI   V RF+++
Sbjct: 607 VGIFVDRGLGGSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTVFRFVVS 666

Query: 673 ADAIGN---------TVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETI- 722
            + +G                  N   DEE++SE +  +S + SV++ E+ + N A  + 
Sbjct: 667 PERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIENAAVDVR 726

Query: 723 AVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYS 781
           + I EV R NL LVGRMP GE+ALA+   S+C ELGPVGSLL S E ST ASVL+IQQY+
Sbjct: 727 SAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVLVIQQYN 786

Query: 782 DR-VFMNLASELEE--DSPDKGSD 802
              +  +L +   E   S DK SD
Sbjct: 787 GTGIAPDLGAAETEVLTSTDKDSD 810

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SUQ7\|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1	Back alignment and function description

>sp\|Q9LUN4\|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1	Back alignment and function description

>sp\|Q1HDT3\|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1	Back alignment and function description

>sp\|Q9SIT5\|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1	Back alignment and function description

>sp\|Q9M353\|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1	Back alignment and function description

>sp\|Q8VYD4\|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKA9\|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2	Back alignment and function description

>sp\|Q9LMJ1\|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1	Back alignment and function description

>sp\|O22920\|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		805
255537655		805	Na(+)/H(+) antiporter, putative [Ricinus	0.983	0.983	0.775	0.0
224053817		804	cation proton exchanger [Populus trichoc	0.970	0.971	0.749	0.0
225426078		796	PREDICTED: cation/H(+) antiporter 18 [Vi	0.981	0.992	0.767	0.0
356497291		806	PREDICTED: cation/H(+) antiporter 18-lik	0.982	0.981	0.706	0.0
356540416		805	PREDICTED: cation/H(+) antiporter 18-lik	0.981	0.981	0.699	0.0
357481511		800	Na+/H+ antiporter-like protein [Medicago	0.978	0.985	0.707	0.0
357481513		803	Cation proton exchanger [Medicago trunca	0.978	0.981	0.704	0.0
449513592		799	PREDICTED: cation/H(+) antiporter 18-lik	0.970	0.977	0.722	0.0
449457680		799	PREDICTED: cation/H(+) antiporter 18-lik	0.970	0.977	0.719	0.0
297801398		810	ATCHX18 [Arabidopsis lyrata subsp. lyrat	0.978	0.972	0.717	0.0

>gi\|255537655\|ref\|XP_002509894.1\| Na(+)/H(+) antiporter, putative [Ricinus communis] gi\|223549793\|gb\|EEF51281.1\| Na(+)/H(+) antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1261 bits (3263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/799 (77%), Positives = 698/799 (87%), Gaps = 7/799 (0%)

Query: 11  ASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPL-RQPRVI 69
           ASVGH CP+PMKP SNGVFQGDSPLDF+LPL ILQICLV++LTR LAF LR L RQPRVI
Sbjct: 5   ASVGHTCPSPMKPASNGVFQGDSPLDFSLPLVILQICLVLVLTRALAFPLRRLLRQPRVI 64

Query: 70  AEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQT 129
           AEI GGILLGPSALGRSE++L AVFPPKS  VLDTLAN+GL++F+FLVGLELD KSLR+T
Sbjct: 65  AEIIGGILLGPSALGRSEKYLHAVFPPKSLPVLDTLANIGLLYFLFLVGLELDLKSLRKT 124

Query: 130 GKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILA 189
           GKKAL IAIAGISLPF +GIGSSF+LR TISKGV+STSFL+FMGVALSITAFPVLARILA
Sbjct: 125 GKKALAIAIAGISLPFGMGIGSSFILRATISKGVNSTSFLLFMGVALSITAFPVLARILA 184

Query: 190 ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTL 249
           ELKLLT DVGRMAMSAAAVNDVAAWILLALA+ALSGS  S +  +WV L G VFVIC TL
Sbjct: 185 ELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSNHSPITSLWVLLCGFVFVICSTL 244

Query: 250 FVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG 309
            +PP FK + R+CHEGEPVEETYVCATLAAVL AGFITDAIGIHAMFGAFV+GVLVPKEG
Sbjct: 245 VLPPIFKLITRRCHEGEPVEETYVCATLAAVLVAGFITDAIGIHAMFGAFVIGVLVPKEG 304

Query: 310 PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTF 369
           PFA ALVEK+EDLVSG+FLPLYFVSSGLKT+IATI GLQSWGLLALV  TAC GKIVGTF
Sbjct: 305 PFARALVEKIEDLVSGLFLPLYFVSSGLKTDIATISGLQSWGLLALVTFTACFGKIVGTF 364

Query: 370 VVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTT 429
           +VSL+ KVPLREALA+G LMNTKGLVELIVLNIGKD+KVLNDQ FAIM+LMA+ TTF+TT
Sbjct: 365 LVSLACKVPLREALAMGFLMNTKGLVELIVLNIGKDKKVLNDQTFAIMVLMALFTTFITT 424

Query: 430 PLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKS 489
           PLVMAVYKPAR++RVADYKHRT+ERKNS  Q RILACFHSARNIPSTINLLEA RG+QK+
Sbjct: 425 PLVMAVYKPARKSRVADYKHRTIERKNSSMQLRILACFHSARNIPSTINLLEASRGVQKA 484

Query: 490 EGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSV 549
           EGLCVYA+HLMELSERSSAILMVHKAR+NGLP WN+G + + N+++VAFEAF+QLS+V V
Sbjct: 485 EGLCVYAMHLMELSERSSAILMVHKARKNGLPTWNKGSKPDSNNVIVAFEAFRQLSQVMV 544

Query: 550 RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA 609
           R MTAISSMSD+HEDICTTAE KRAAIIILPFHKHQRLDGSLETTR DFRWVN+RVL+HA
Sbjct: 545 RSMTAISSMSDIHEDICTTAERKRAAIIILPFHKHQRLDGSLETTRIDFRWVNRRVLEHA 604

Query: 610 PCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRF 669
           PCSVGIL+DRGLGGT+ V AS+VSY ITVLFFGGRDDREALA GARMAEHPGIS  VIRF
Sbjct: 605 PCSVGILVDRGLGGTSHVPASDVSYLITVLFFGGRDDREALAYGARMAEHPGISLKVIRF 664

Query: 670 LLAADAIGNTVSVDMAGN-----ASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAV 724
           L+A DA G    V+M  +      S DE+ L EFK KT ++ SV+YEE+ +RNTA  + V
Sbjct: 665 LVAPDAQGEITQVNMESSINTKLGSWDEQFLLEFKQKTCKDSSVKYEEKAIRNTAGAMDV 724

Query: 725 IREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFS-TASVLIIQQYSDR 783
           I EV+ CNL LVGRMP+GE+A+AL+  ++C ELGPVGSLL +  FS TASVL+IQQY  +
Sbjct: 725 IHEVNHCNLFLVGRMPEGEIAIALNRWNECPELGPVGSLLATSNFSTTASVLVIQQYDSQ 784

Query: 784 VFMNLASELEEDSPDKGSD 802
           V ++LAS   +D   + S+
Sbjct: 785 VSLDLASHAGDDQVGRDSE 803

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224053817\|ref\|XP_002297994.1\| cation proton exchanger [Populus trichocarpa] gi\|222845252\|gb\|EEE82799.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225426078\|ref\|XP_002272080.1\| PREDICTED: cation/H(+) antiporter 18 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356497291\|ref\|XP_003517494.1\| PREDICTED: cation/H(+) antiporter 18-like [Glycine max]	Back alignment and taxonomy information

>gi\|356540416\|ref\|XP_003538685.1\| PREDICTED: cation/H(+) antiporter 18-like [Glycine max]	Back alignment and taxonomy information

>gi\|357481511\|ref\|XP_003611041.1\| Na+/H+ antiporter-like protein [Medicago truncatula] gi\|355512376\|gb\|AES93999.1\| Na+/H+ antiporter-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357481513\|ref\|XP_003611042.1\| Cation proton exchanger [Medicago truncatula] gi\|355512377\|gb\|AES94000.1\| Cation proton exchanger [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449513592\|ref\|XP_004164366.1\| PREDICTED: cation/H(+) antiporter 18-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449457680\|ref\|XP_004146576.1\| PREDICTED: cation/H(+) antiporter 18-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297801398\|ref\|XP_002868583.1\| ATCHX18 [Arabidopsis lyrata subsp. lyrata] gi\|297314419\|gb\|EFH44842.1\| ATCHX18 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		805
TAIR\|locus:2160457		810	CHX18 "cation/H+ exchanger 18"	0.977	0.971	0.679	2.6e-285
TAIR\|locus:2128484		820	CHX17 "cation/H+ exchanger 17"	0.869	0.853	0.639	4.5e-255
TAIR\|locus:2090462		800	CHX19 "cation/H+ exchanger 19"	0.978	0.985	0.592	1.2e-241
TAIR\|locus:2024578		811	CHX16 "cation/H+ exchanger 16"	0.946	0.939	0.547	1.8e-213
TAIR\|locus:2084370		842	CHX20 "cation/H+ exchanger 20"	0.745	0.712	0.520	2.1e-199
TAIR\|locus:2054152		821	CHX15 "cation/hydrogen exchang	0.940	0.922	0.464	1.9e-186
TAIR\|locus:2031968		867	CHX23 "cation/H+ exchanger 23"	0.926	0.860	0.355	5.8e-114
TAIR\|locus:2007392		829	CHX14 "cation/hydrogen exchang	0.951	0.924	0.321	1.6e-102
TAIR\|locus:2060827		831	ATCHX13 [Arabidopsis thaliana	0.931	0.902	0.304	3.8e-94
ASPGD\|ASPL0000061348		883	AN1290 [Emericella nidulans (t	0.511	0.466	0.397	3.6e-86

TAIR\|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2741 (969.9 bits), Expect = 2.6e-285, P = 2.6e-285
 Identities = 546/803 (67%), Positives = 647/803 (80%)

Query:    16 ACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGG 75
             ACPAPMK TSNGVFQGD+P+DFALPLAILQI +VI+LTR LA++LRPLRQPRVIAE+ GG
Sbjct:     8 ACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVIGG 67

Query:    76 ILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALG 135
             I+LGPS LGRS+ FL AVFP KS TVL+TLANLGL+FF+FL GLE+D K+LR+TGKKALG
Sbjct:    68 IMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRRTGKKALG 127

Query:   136 IAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLT 195
             IA+AGI+LPFALGIGSSF+L+ TISKGV+ST+FLVFMGVALSITAFPVLARILAELKLLT
Sbjct:   128 IALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARILAELKLLT 187

Query:   196 ADVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVWVFLSGCVFVICLTLFVPPTF 255
              ++GR                                 +WVFLSGC FVI  +  +PP F
Sbjct:   188 TEIGRLAMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGASFIIPPIF 247

Query:   256 KWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANAL 315
             +W++R+CHEGEP+EETY+CATLA VL  GFITDAIGIH+MFGAFVVGVL+PKEGPFA AL
Sbjct:   248 RWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGPFAGAL 307

Query:   316 VEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF 375
             VEKVEDLVSG+FLPLYFV+SGLKTN+ATIQG QSWGLL LV  TAC GKI+GT  VSL+F
Sbjct:   308 VEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLGVSLAF 367

Query:   376 KVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 435
             K+P+REA+ LG LMNTKGLVELIVLNIGKDRKVLNDQ FAIM+LMA+ TTF+TTP+VMAV
Sbjct:   368 KIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPVVMAV 427

Query:   436 YKPARRARV-ADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCV 494
             YKPARRA+   +YKHR VER+N+  Q RIL CFH A +IPS INLLEA RGI+K EGLCV
Sbjct:   428 YKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKGEGLCV 487

Query:   495 YALHLMELSERSSAILMVHKARRNGLPFWNR-GRQSNPNHIVVAFEAFQQLSRVSVRPMT 553
             YALHL ELSERSSAILMVHK R+NG+PFWNR G  ++ + +VVAF+AFQQLSRV+VRPMT
Sbjct:   488 YALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSRVNVRPMT 547

Query:   554 AISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSV 613
             AISSMSD+HEDICTTA  K+AAI+ILPFHKHQ+LDGSLETTR D+RWVN+RVL  APCSV
Sbjct:   548 AISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVLLQAPCSV 607

Query:   614 GILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAA 673
             GI +DRGLGG++QVSA +VSY++ VLFFGG DDREALA G RMAEHPGI   V RF+++ 
Sbjct:   608 GIFVDRGLGGSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTVFRFVVSP 667

Query:   674 DAIGNTVSVDMAGNAS---------MDEEVLSEFKLKTSRNGSVRYEERLVRNTAETI-A 723
             + +G  V+V+++ N +          DEE++SE +  +S + SV++ E+ + N A  + +
Sbjct:   668 ERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIENAAVDVRS 727

Query:   724 VIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSD 782
              I EV R NL LVGRMP GE+ALA+   S+C ELGPVGSLL S E ST ASVL+IQQY+ 
Sbjct:   728 AIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVLVIQQYNG 787

Query:   783 R-VFMNL-ASELEE-DSPDKGSD 802
               +  +L A+E E   S DK SD
Sbjct:   788 TGIAPDLGAAETEVLTSTDKDSD 810

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR\|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000061348 AN1290 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFR9	CHX18_ARATH	No assigned EC number	0.7077	0.9788	0.9728	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		805
PLN03159		832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	0.0
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	8e-65
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	8e-64
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	1e-37
COG4651		408	COG4651, RosB, Kef-type K+ transport system, predi	9e-17
PRK03659		601	PRK03659, PRK03659, glutathione-regulated potassiu	7e-15
PRK03562		621	PRK03562, PRK03562, glutathione-regulated potassiu	4e-14
PRK10669		558	PRK10669, PRK10669, putative cation:proton antipor	2e-06
COG0025		429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	2e-06

>gnl\|CDD\|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	Back alignment and domain information

 Score =  828 bits (2141), Expect = 0.0
 Identities = 404/784 (51%), Positives = 555/784 (70%), Gaps = 27/784 (3%)

Query: 17  CPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGI 76
           C APM  T+NG++QGD+PLDF+LPL ILQ+ LV++ TR L FIL+P RQPRVI+EI GG+
Sbjct: 19  CYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGV 78

Query: 77  LLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGI 136
           +LGPS LG+SE F   +FP +S  VL+T+ANLGL++F+FLVG+E+D   +R+TGKKAL I
Sbjct: 79  ILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAI 138

Query: 137 AIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTA 196
           AIAG++LPF +G+  SF+  + +S+ V   +F++F+GVALS+TAFPVLARILAE+KL+  
Sbjct: 139 AIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINT 197

Query: 197 DVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFK 256
           ++GR+AMSAA VND+ AWILLALA+AL+ +  +SL  +WV LS   FV+     V P   
Sbjct: 198 ELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIW 257

Query: 257 WMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALV 316
           W+ R+  EGE   E Y+C  L  V+ +GFITDAIG H++FGAFV G+++P  GP    L+
Sbjct: 258 WIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLI 316

Query: 317 EKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFK 376
           EK+ED VSG+ LPL+F  SGLKTN+  IQG  +WGLL LVI+ A  GKI+GT +++  + 
Sbjct: 317 EKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYT 376

Query: 377 VPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 436
           +P RE + LG LMNTKGLVE+IVLN+G+D++VL+D+ FA+M+L+AV  T + TP+V  VY
Sbjct: 377 MPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436

Query: 437 KPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYA 496
           +PAR  R+  YK RT++R    A+ R+L C H+ RN+P+ INLLEA    ++S  +C+Y 
Sbjct: 437 RPAR--RLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSP-ICIYV 493

Query: 497 LHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQ-LSRVSVRPMTAI 555
           LHL+EL+ R+SA+L+VH  R++G P  NR  Q+  +HI+ AFE ++Q    VSV+P+TAI
Sbjct: 494 LHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAI 552

Query: 556 SSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 615
           S  S MHED+C  AE KR ++II+PFHK Q +DG +E T   FR VNQ VL +APCSVGI
Sbjct: 553 SPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGI 612

Query: 616 LIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADA 675
           L+DRGL G T+++++ VS+ + VLFFGG DDREALA   RM+EHPGI+  V+RF+   DA
Sbjct: 613 LVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDA 672

Query: 676 IGN--------------TVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAET 721
                            TV  D      +DEE ++EF+ + + N S+ Y E++V N  ET
Sbjct: 673 APTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEET 732

Query: 722 IAVIREV-SRCNLLLVGRMPDGE---LALALSTRSDCLELGPVGSLLTSLEFS-TASVLI 776
           +A IR + S  +L +VGR   G    L   L+  S+C ELG +G LL S +F+ T SVL+
Sbjct: 733 VAAIRSMDSAHDLFIVGRGQ-GMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLV 791

Query: 777 IQQY 780
           +QQY
Sbjct: 792 VQQY 795

Length = 832

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>gnl\|CDD\|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>gnl\|CDD\|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>gnl\|CDD\|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		805
PLN03159		832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669		558	putative cation:proton antiport protein; Provision	100.0
PRK03659		601	glutathione-regulated potassium-efflux system prot	100.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.97
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.97
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.95
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.94
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.93
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.82
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.77
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.75
PRK11175		305	universal stress protein UspE; Provisional	99.68
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.47
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.41
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	99.34
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	99.17
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	99.14
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	99.09
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	99.08
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	99.07
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.04
PRK15456		142	universal stress protein UspG; Provisional	98.99
PRK15005		144	universal stress protein F; Provisional	98.96
cd01987		124	USP_OKCHK USP domain is located between the N-term	98.91
PRK15118		144	universal stress global response regulator UspA; P	98.89
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.86
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.86
PRK09982		142	universal stress protein UspD; Provisional	98.85
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.84
PRK10116		142	universal stress protein UspC; Provisional	98.69
PRK11175		305	universal stress protein UspE; Provisional	98.6
cd00293		130	USP_Like Usp: Universal stress protein family. The	98.59
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.32
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.25
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.21
PRK09982		142	universal stress protein UspD; Provisional	98.18
PRK15005		144	universal stress protein F; Provisional	98.18
COG0589		154	UspA Universal stress protein UspA and related nuc	98.11
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	98.06
cd01987		124	USP_OKCHK USP domain is located between the N-term	97.99
PRK10116		142	universal stress protein UspC; Provisional	97.92
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	97.9
PRK15118		144	universal stress global response regulator UspA; P	97.85
PRK15456		142	universal stress protein UspG; Provisional	97.84
cd00293		130	USP_Like Usp: Universal stress protein family. The	97.68
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.61
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	97.58
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	97.5
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.36
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	97.27
TIGR00698		335	conserved hypothetical integral membrane protein.	97.23
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	97.18
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.1
COG0385		319	Predicted Na+-dependent transporter [General funct	97.04
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.75
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	96.75
COG3493		438	CitS Na+/citrate symporter [Energy production and	96.73
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	96.64
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.42
PRK03562		621	glutathione-regulated potassium-efflux system prot	96.35
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	96.35
PRK05274		326	2-keto-3-deoxygluconate permease; Provisional	96.35
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	96.14
COG0589		154	UspA Universal stress protein UspA and related nuc	96.04
PRK03659		601	glutathione-regulated potassium-efflux system prot	95.95
PRK10669		558	putative cation:proton antiport protein; Provision	95.86
PRK10490		895	sensor protein KdpD; Provisional	95.74
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	95.61
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	95.55
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	95.52
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	95.46
PRK05326		562	potassium/proton antiporter; Reviewed	95.26
COG3180		352	AbrB Putative ammonia monooxygenase [General funct	95.24
COG2855		334	Predicted membrane protein [Function unknown]	95.22
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.21
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.17
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	95.17
PRK03818		552	putative transporter; Validated	94.83
TIGR00698		335	conserved hypothetical integral membrane protein.	94.41
PLN03159		832	cation/H(+) antiporter 15; Provisional	93.87
TIGR00841		286	bass bile acid transporter. Functionally character	93.6
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	93.51
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	93.49
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	93.41
TIGR01625		154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	93.32
PRK04972		558	putative transporter; Provisional	92.85
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	92.42
TIGR00930		953	2a30 K-Cl cotransporter.	92.04
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	91.45
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	91.16
COG2855		334	Predicted membrane protein [Function unknown]	90.96
PRK10490		895	sensor protein KdpD; Provisional	90.78
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.38
COG2985		544	Predicted permease [General function prediction on	88.45
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	88.18
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	87.53
PRK04288		232	antiholin-like protein LrgB; Provisional	86.19
PF03547		385	Mem_trans: Membrane transport protein; InterPro: I	86.09
PRK04972		558	putative transporter; Provisional	85.23
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	83.77
PRK03818		552	putative transporter; Validated	83.75
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	83.61
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	83.23
COG3329		372	Predicted permease [General function prediction on	83.05
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	82.89
PRK03359		256	putative electron transfer flavoprotein FixA; Revi	81.83
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	80.02

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.5e-150  Score=1345.06  Aligned_cols=769  Identities=52%  Similarity=0.914  Sum_probs=694.4

Q ss_pred             cccccccCC-CCCCCCCCCCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhccccccCC
Q 003645            7 GSLMASVGH-ACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGR   85 (805)
Q Consensus         7 ~~~~~~~~~-~c~~~~~~~s~g~~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~   85 (805)
                      |-..+.+.. +|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|.
T Consensus         8 ~~~~~~~~~~~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~   87 (832)
T PLN03159          8 GKNPSTASSVVCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQ   87 (832)
T ss_pred             CCCCCCCCCcccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCc
Confidence            333333333 6997667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcccCCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCch
Q 003645           86 SERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDS  165 (805)
Q Consensus        86 ~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~  165 (805)
                      +..+.+.+||.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+.+++++.. .......
T Consensus        88 i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~  166 (832)
T PLN03159         88 SEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQ  166 (832)
T ss_pred             ChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccch
Confidence            988889999988888999999999999999999999999999999999999999999999999988877743 2111222


Q ss_pred             hHHHHHHHHHHhhccHHHHHHHHHhcCccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 003645          166 TSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVI  245 (805)
Q Consensus       166 ~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~i~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~i~~~~  245 (805)
                      ....+++|+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+......+|.++..+++++
T Consensus       167 ~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~  246 (832)
T PLN03159        167 GTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVL  246 (832)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999887665443333445677777778888


Q ss_pred             HHHHhhHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHhHHH
Q 003645          246 CLTLFVPPTFKWMARQCHEGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSG  325 (805)
Q Consensus       246 ~~~~v~~~~~~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~  325 (805)
                      ++.+++||++.|+.++++++++.++.+++++++++++++++++.+|+|+++|||++|+++|+ +++++++.+|+++++++
T Consensus       247 ~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~  325 (832)
T PLN03159        247 FCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSG  325 (832)
T ss_pred             HHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHH
Confidence            88999999999999999988888999999999999999999999999999999999999995 78999999999999999


Q ss_pred             HHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 003645          326 IFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKD  405 (805)
Q Consensus       326 ~f~PlfF~~~Gl~~dl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~kG~v~l~l~~~~~~  405 (805)
                      +|+|+||+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++++++++
T Consensus       326 lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~  405 (832)
T PLN03159        326 LLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRD  405 (832)
T ss_pred             HHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence            99999999999999998886544566666777888999999999999999999999999999999999999999999999


Q ss_pred             CCccChhHHHHHHHHHHHHHHhhHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEeecCCChhhHHHHHHHhcc
Q 003645          406 RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRG  485 (805)
Q Consensus       406 ~~~i~~~~~~~~vl~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~l~~~~~~  485 (805)
                      .|+++++.|++++++++++|.+++|++.++|+|+||+.  .|++|++|+.++++|+|+|+|+|++++++++++|++++++
T Consensus       406 ~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~--~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~  483 (832)
T PLN03159        406 QEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLV--GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHP  483 (832)
T ss_pred             cCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhc--cccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHhhhc-cCeEEEEeEEecCCCChHHH
Q 003645          486 IQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL-SRVSVRPMTAISSMSDMHED  564 (805)
Q Consensus       486 ~~~~~~~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~v~v~~~~~vs~~~~~~~d  564 (805)
                      + +++|+++|++||||+++|++|++++|+.+++..+..++ +..++|+++++|++|+++ ++++|+++|++|||++||+|
T Consensus       484 t-~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~d  561 (832)
T PLN03159        484 T-KRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHED  561 (832)
T ss_pred             C-CCCCceEEEEEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHH
Confidence            9 89999999999999999999999999865443321111 125589999999999976 58999999999999999999


Q ss_pred             HHHHHHhcCccEEEecCccccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCc
Q 003645          565 ICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGR  644 (805)
Q Consensus       565 I~~~A~e~~a~lIilp~h~~~~~~g~~~~~~~~~~~vn~~Vl~~ApcsVgIlvdrg~~~~~~~~~~~~~~~i~v~f~GG~  644 (805)
                      ||++|+|+++++||+||||+|+.||++++.+..+|.+|+|||++||||||||||||.++..+....+..+||+++|+|||
T Consensus       562 Ic~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~  641 (832)
T PLN03159        562 VCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGP  641 (832)
T ss_pred             HHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCc
Confidence            99999999999999999999999999999999999999999999999999999999764433344456789999999999


Q ss_pred             ChHHHHHHHHHHhhCCCeEEEEEEEeecccccCCc------------cc--cCCcCccccHHHHHHHHHhhcCCCCCeEE
Q 003645          645 DDREALACGARMAEHPGISFIVIRFLLAADAIGNT------------VS--VDMAGNASMDEEVLSEFKLKTSRNGSVRY  710 (805)
Q Consensus       645 ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~------------~~--~~~~~~~~~d~~~l~e~~~~~~~~~~v~~  710 (805)
                      ||||||+||+|||+||++++||+||++.++...+.            +.  .+++.|+++||++++|||.++..++++.|
T Consensus       642 DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y  721 (832)
T PLN03159        642 DDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVY  721 (832)
T ss_pred             chHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEE
Confidence            99999999999999999999999999754322100            00  02356788999999999999988899999


Q ss_pred             EEEEecChHHHHHHHHhccC-CCEEEEccCC--CchhccccccCCCCCccccchhhhccCCCCc-eeEEEEEeec
Q 003645          711 EERLVRNTAETIAVIREVSR-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYS  781 (805)
Q Consensus       711 ~e~~v~~~~e~~~~i~~~~~-~DLiiVGr~~--~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~SvLvvqq~~  781 (805)
                      +||+|+|++||++++|++++ |||+||||+|  +|++++||+||+||||||+|||+|||+||++ +||||||||+
T Consensus       722 ~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~  796 (832)
T PLN03159        722 TEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV  796 (832)
T ss_pred             EEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence            99999999999999999998 9999999998  5999999999999999999999999999999 9999999998

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>PRK05274 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>PRK04288 antiholin-like protein LrgB; Provisional	Back alignment and domain information

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG3329 Predicted permease [General function prediction only]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		805
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 73.3 bits (179), Expect = 2e-13
 Identities = 73/555 (13%), Positives = 160/555 (28%), Gaps = 205/555 (36%)

Query: 197 DVGRMAMSAAAVNDVAA------------WILLALAVALSGSGQSSLVPVWVFLSGCVFV 244
           D+ +  +S   ++ +              W LL        S Q  +V    F+   +  
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL--------SKQEEMVQK--FVEEVL-- 87

Query: 245 ICLTLFVPPTFKWMA----RQCHEGEPVEETYVCA-----TLAAVLAAGFIT-------- 287
                     +K++      +  +   +   Y+           V A   ++        
Sbjct: 88  -------RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 288 ----------DAIGIHAMFGAFVVG--VLVPKEGPFANALVEKVEDLVSGIFLPLYFVSS 335
                       + I  + G+   G   +           V     +   +   +++++ 
Sbjct: 141 RQALLELRPAKNVLIDGVLGS---GKTWVA--------LDVCLSYKVQCKMDFKIFWLNL 189

Query: 336 G-LKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLR-EAL--ALGILMNT 391
               +    ++ LQ   LL  +                 S  + LR  ++   L  L+ +
Sbjct: 190 KNCNSPETVLEMLQK--LLYQIDPNWTSR-------SDHSSNIKLRIHSIQAELRRLLKS 240

Query: 392 KGLVE-LIVL-NIGKDRKVLNDQVFAIM--ILMAVVTTFMTTPLVMAVYKPARRARVAD- 446
           K     L+VL N+ ++ K  N   F +   IL   +TT              R  +V D 
Sbjct: 241 KPYENCLLVLLNV-QNAKAWN--AFNLSCKIL---LTT--------------RFKQVTDF 280

Query: 447 -----YKHRTVE-------RKNSKAQF-RIL----------ACFHS----------ARNI 473
                  H +++           K+   + L              +           R+ 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 474 PSTIN-----LLEALRGIQKSEGLCVYALHLMELSER--SSAILM--VHKARRNGLP--- 521
            +T +       + L  I +S    +  L   E  +     ++     H      +P   
Sbjct: 341 LATWDNWKHVNCDKLTTIIES---SLNVLEPAEYRKMFDRLSVFPPSAH------IPTIL 391

Query: 522 ---FWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRA--AI 576
               W    +S+   +V       + S V  +P  +  S+  ++ ++    E++ A    
Sbjct: 392 LSLIWFDVIKSDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 577 II--------------------------LPFH-KHQRLDGSLETTRS---DFRWVNQRVL 606
           I+                          +  H K+      +   R    DFR++ Q+ +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-I 507

Query: 607 KH---APCSVGILID 618
           +H   A  + G +++
Sbjct: 508 RHDSTAWNASGSILN 522

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		805
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.62
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.53
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	99.47
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	99.43
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.4
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	99.17
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.06
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.97
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	98.78
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.75
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.74
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	98.39
d1efpb_		246	Small, beta subunit of electron transfer flavoprot	87.75
d3clsc1		262	Small, beta subunit of electron transfer flavoprot	83.79

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.62  E-value=4.1e-15  Score=111.81  Aligned_cols=147  Identities=18%  Similarity=0.158  Sum_probs=102.2

Q ss_pred             CEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCC-CCCCCC----CCCCCHHH
Q ss_conf             1699974058982239999998425887899358999953116875257788653108998-767788----99952599
Q 003645          461 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLP-FWNRGR----QSNPNHIV  535 (805)
Q Consensus       461 lrILv~i~~~~~~~~~i~la~~la~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~i~  535 (805)
                      -|||+|+|+++.+..+++.+..++.   ..+.+++++|+++.................... ......    ....++..
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la~---~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFKT---LKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTCC---SSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             8299998799899999999999987---5399799998305665443333222245332220078899999999999999


Q ss_pred             HHHHHH---HHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             999996---52157279985983389973898999987239659995276555568963345510289999985019984
Q 003645          536 VAFEAF---QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS  612 (805)
Q Consensus       536 ~~~~~~---~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~adLIIlg~h~~~~~~g~~~~~~~~~~sv~~~Vl~~ApCs  612 (805)
                      +.++.+   .+..++.+++.+..+   ++.+.||++|++.++||||||.|++.++++.+      +||+.++|++++|||
T Consensus        81 ~~l~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~GS~a~~vl~~s~~p  151 (160)
T d1mjha_          81 NKMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNKP  151 (160)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEEC---CHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC------CCCHHHHHHHCCCCC
T ss_conf             999999999876597699999945---58987766520242214776168998642141------070999999629998


Q ss_pred             EEEEECC
Q ss_conf             5999549
Q 003645          613 VGILIDR  619 (805)
Q Consensus       613 VgIlvdr  619 (805)
                      |.|+..+
T Consensus       152 VlvV~~~  158 (160)
T d1mjha_         152 VLVVKRK  158 (160)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
T ss_conf             9998289

PyMOL of d1mjha_

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}	Back information, alignment and structure