Citrus Sinensis ID: 003683

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800---

MNILQISFDGLQDSEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYNTLGMHNSLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLRKNTGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSHSGSDHLWLLFLSPRECYDRRWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPVYMHEVEELDQTTKQWTHFTSYNLYESDHDFLDQIWK

ccEEEEEccccccccccEEEEEEEEcccccHHHHHHHHHHcccccccHHHHHcccccEEEcccccEEccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccEEEEEEccccccccEEEEcHHHHcccccccEEEEccEEEccccccccccccEEEEcccccccccccccccccEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEEEcccccEEccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccEEEEccccccEEEcccccccccccEEEEEccHHHHHcccHHHHHHHHHHHHHccccccccEEEEccccccccccccccccEEEEEcccccccccccEEEEEEEEEEEccccccccccccEEEEEEEEccccccEEEEcccccccccccEEEEEEccccccccccccccccEEEEEEEccccEEEEcccccccEEEEEEEEEEEcccccccccccccccccccccccccccccHHcccc

ccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHcEEEEEcccccEEHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccEEEEEEEEcccccccEEEccHHHHHHHHccEEEEEEccccccccccccHHcEEEEEcccccccccccccHHHEEEEEccccHHHHHccccccccccEEEEccccccccccccccccccHHEEEcccccccEEcccccccHHHHccccccEEEEccccccHHcccHHccccccccEEEccccccccccccHHcccccEEEEccccccHHcccccHccHHcccEEEcccccHHHHccHHHcccHcccEEEccccccEcccccHHHHHcccEEEccccccHccccccccccccccEEEccccHHHHHccHHHcccHcccEEEccccccccccccHHHHHcccEEEccccccccccccccccccEEEEEccccccccccccccccccccEEcccccHHHHHHccccHHccccccEEEccccccccccHHHHHHHHccEEEccccHHHcccccccccccEEEcccccccccccccccccHHHHHHcccccHHHHccccHHHHHHHHHHHHHccccccccEEEcccccccHHccccccccEEEEEccccccccccccEEEEEEEEEccccccccccccEEEEEEEEEccccccEEcccccccccccccEEEEEEcccccccccccccccccEEEEEEEEEEEEEEccccccEEEEEcEEEEEEEccccccccccccccccccccccccHHHHHHHHHc

MNILQISFDGLQDSEKKIFLDVACFFKRWDRDYVAKILegcgfspviGIEVLIERSlltvddyntlgmhNSLQELGQLIvtrqspeepgkrsrlWRQEEVRHVLRKntgselvegmiiddyffpvneVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRlldwhryplkslpsnlqldkIVEFKMCYSRIEELWKGIKHLNMLKVMKLshsenliktpdfteapnleelYLEGCTKLrkvhpslllhnKLIFVESLKILILSGClklrkfphvvgSMECLQELLldgtdikelplSIEHLFGLVQLTlndcknlsslpvAISSFQCLrnlklsgcsklkkfPQIVTTMEdlselnldgtsitevpssiellpglellnlndcknfarvpssinglkslktlnlsgccklenvpdtlgqvesleeldisetavrrppssvFLMKNLRtlsfsgcngppssaswhlhlpfnlmgKSSCLVALMlpslsglrsltkldlsdcglgegaipsdignlhSLNELYlsknnfvtLPASINSLLNLKELEMEDckrlqflpqlppniifVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVsdplkdfstvipgskipkwfmyqnegssitvtrpsylynMNKIVGYAICCvfhvprhstrikkrrhsyelqccmdgsdrgffitfggkfshsgsdhlwllflsprecydrrwifesnhfklsfndarekydmagsgtglkvkrcgfhpvymhEVEELDQTTKQWTHFtsynlyesdhDFLDQIWK

mnilqisfdglqdseKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYNTLGMHNSLQELGQLIvtrqspeepgkrsrlwrqeevrhvlrkntgselvegMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLkslpsnlqldkiVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEeldisetavrrppssVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSHSGSDHLWLLFLSPRECYDRRWIFESnhfklsfndaREKYDMAGSGTGLKVKRCGFHPVYMHEVEELDQTTKQWTHFTSYNLYESDHDFLDQIWK

MNILQISFDGLQDSEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYNTLGMHNSLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLRKNTGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIellpglellnlnDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSHSGSDHLWLLFLSPRECYDRRWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPVYMHEVEELDQTTKQWTHFTSYNLYESDHDFLDQIWK

*****ISFDGLQDSEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYNTLGMHNSLQELGQLIV******************EVRHVLRKNTGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESL***************SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSHSGSDHLWLLFLSPRECYDRRWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPVYMHEVEELDQTTKQWTHFTSYNLYESDHDFLDQI**

MNILQISFDGLQDSEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYNTLGMHNSLQELGQLIVTRQ***********WRQEEVRHVLRKNTGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSDPLKDFSTVIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSHSGSDHLWLLFLSPRECYDRRWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPVYMHEVEELDQTTKQWTHFTSYNLYESDHDFLDQIWK

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		803	2.2.26 [Sep-21-2011]
Q40392		1144	TMV resistance protein N	N/A	no	0.724	0.508	0.315	4e-84
Q9SZ67		1895	Probable WRKY transcripti	no	no	0.484	0.205	0.384	8e-68
Q9FL92		1372	Probable WRKY transcripti	no	no	0.445	0.260	0.353	2e-56
Q9FH83		1288	Probable WRKY transcripti	no	no	0.541	0.337	0.323	4e-52
O23530		1301	Protein SUPPRESSOR OF npr	no	no	0.687	0.424	0.304	1e-51
Q9FKN7		1613	Protein DA1-related 4 OS=	no	no	0.459	0.228	0.311	7e-40
O82500		1095	Putative disease resistan	no	no	0.460	0.337	0.284	2e-36
Q9RBS2		1024	Protein PopC OS=Ralstonia	yes	no	0.463	0.363	0.276	1e-21
P0CB16		1201	Putative disease resistan	no	no	0.458	0.306	0.253	1e-17
A4D1F6		860	Leucine-rich repeat and d	yes	no	0.414	0.387	0.251	3e-14

>sp\|Q40392\|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1	Back alignment and function desciption

 Score =  313 bits (801), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 214/679 (31%), Positives = 340/679 (50%), Gaps = 97/679 (14%)

Query: 1    MNILQISFDGLQDSEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTV 60
            ++ L+IS+DGL+  ++++FLD+ACF +  ++DY+ +ILE C      G+ +LI++SL+ +
Sbjct: 420  IDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFI 479

Query: 61   DDYNTLGMHNSLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLRKNTGSELVEGMIIDD 120
             +YN + MH+ +Q++G+ IV  Q  ++PG+RSRLW  +EV  V+  NTG+  +E + +  
Sbjct: 480  SEYNQVQMHDLIQDMGKYIVNFQ--KDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVSS 537

Query: 121  YFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQ 180
            Y    + +  S +A   M  L +  +        ++YL N LR      YP +S PS  +
Sbjct: 538  Y---SSTLRFSNQAVKNMKRLRVFNMGRSSTHYAIDYLPNNLRCFVCTNYPWESFPSTFE 594

Query: 181  LDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 240
            L  +V  ++ ++ +  LW   KHL  L+ + LS S+ L +TPDFT  PN           
Sbjct: 595  LKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPN----------- 643

Query: 241  LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS 300
                               L+ + L  C  L +  H +G   C  ++             
Sbjct: 644  -------------------LEYVNLYQCSNLEEVHHSLG---CCSKV------------- 668

Query: 301  IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 360
                   + L LNDCK+L   P    + + L  L L  C  L+K P+I   M+   ++++
Sbjct: 669  -------IGLYLNDCKSLKRFPCV--NVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHM 719

Query: 361  DGTSITEVPSSI-ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT 419
             G+ I E+PSSI +    +  L L + KN   +PSSI  LKSL +L++SGC KLE++P+ 
Sbjct: 720  QGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEE 779

Query: 420  LGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSS 479
            +G +++L   D S+T + RPPSS+  +  L  L F G          H   P        
Sbjct: 780  IGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKD-----GVHFEFP-------- 826

Query: 480  CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINS 539
                   P   GL SL  L+LS C L +G +P +IG+L SL +L LS+NNF  LP+SI  
Sbjct: 827  -------PVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQ 879

Query: 540  LLNLKELEMEDCKRLQFLPQLPPNIIFVKVNGCSSLVTLLGALKLCKSNGIVIECIDSLK 599
            L  L+ L+++DC+RL  LP+LPP +  + V+ C   +  +  L   +     ++  D+  
Sbjct: 880  LGALQSLDLKDCQRLTQLPELPPELNELHVD-CHMALKFIHYLVTKRKKLHRVKLDDAHN 938

Query: 600  LLRNNGWAILMLREYLEAVSDPLKDFS-------TVIPGS----KIPKWFMYQNEGSSIT 648
                N +A  M     + +S    D S       TV  G     KIP WF +Q   SS++
Sbjct: 939  DTMYNLFAYTM----FQNISSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVS 994

Query: 649  VTRPSYLYNMNKIVGYAIC 667
            V  P   Y  +K +G+A+C
Sbjct: 995  VNLPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp\|Q9SZ67\|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1	Back alignment and function description

>sp\|Q9FL92\|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1	Back alignment and function description

>sp\|Q9FH83\|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3	Back alignment and function description

>sp\|O23530\|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3	Back alignment and function description

>sp\|Q9FKN7\|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2	Back alignment and function description

>sp\|O82500\|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1	Back alignment and function description

>sp\|Q9RBS2\|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2	Back alignment and function description

>sp\|P0CB16\|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2	Back alignment and function description

>sp\|A4D1F6\|LRRD1_HUMAN Leucine-rich repeat and death domain-containing protein 1 OS=Homo sapiens GN=LRRD1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		803
359486075		1291	PREDICTED: TMV resistance protein N-like	0.920	0.572	0.409	1e-148
359486073		1296	PREDICTED: TMV resistance protein N-like	0.924	0.572	0.410	1e-147
147770134		1414	hypothetical protein VITISV_040107 [Viti	0.920	0.522	0.405	1e-146
451798988		1219	TMV resistance protein N-like protein 6	0.821	0.541	0.428	1e-143
451798990		1335	TMV resistance protein N-like protein 7	0.932	0.561	0.397	1e-142
359486071		1261	PREDICTED: TMV resistance protein N-like	0.945	0.601	0.401	1e-140
359496026		1250	PREDICTED: TMV resistance protein N-like	0.872	0.560	0.407	1e-140
224127726		1203	tir-nbs-lrr resistance protein [Populus	0.881	0.588	0.404	1e-135
225448053		1468	PREDICTED: TMV resistance protein N-like	0.937	0.512	0.380	1e-135
359493267		1417	PREDICTED: TMV resistance protein N-like	0.948	0.537	0.377	1e-132

>gi\|359486075\|ref\|XP_002273047.2\| PREDICTED: TMV resistance protein N-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 340/831 (40%), Positives = 473/831 (56%), Gaps = 92/831 (11%)

Query: 2    NILQISFDGLQDSEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVD 61
            ++L+ISFDGL D++K IF D+ACFFK  D+DYV K+L+ C F P IGI  LI++SL+T+ 
Sbjct: 424  DVLRISFDGLDDNQKDIFFDIACFFKGQDKDYVIKLLKSCDFFPEIGIRNLIDKSLVTIS 483

Query: 62   DYNTLGMHNSLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLRKNTGSELVEGMIIDDY 121
             YN L MH+ +QE+G  IV ++S ++PGKRSRLW  ++V  +L  NTG+E VEGM+++  
Sbjct: 484  -YNKLCMHDLIQEMGWEIVRQESMKDPGKRSRLWVNDDVIDMLTTNTGTEAVEGMVLN-- 540

Query: 122  FFPVNEVHLSAKAFSLMTNLGLLKINNVQL-----------------------LEG-LEY 157
               + E+H S   F+ M  L +L+  + Q+                       L G  ++
Sbjct: 541  LSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTECKFHLSGDFKF 600

Query: 158  LSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSEN 217
            LSN LR L W  YPLKSLPSN   +K++E KMC+S++E+LW+G K    LK ++LSHS++
Sbjct: 601  LSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQKLKFIELSHSQH 660

Query: 218  LIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV-----------------ESL 260
            LIK PDF+ AP L  + LEGCT L KVHPS+    KLIF+                 ESL
Sbjct: 661  LIKAPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLKSFLSSIHLESL 720

Query: 261  KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 320
            +IL LSGC KL+K P V G+M+ L EL L GT IK LPLSIE+L GL    L +CK+L S
Sbjct: 721  QILTLSGCSKLKKLPEVQGAMDNLSELSLKGTAIKGLPLSIEYLNGLALFNLEECKSLES 780

Query: 321  LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLEL 380
            LP  I   + L+ L LS C +LKK P+I   ME L EL LD T + E+PSSIE L GL L
Sbjct: 781  LPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLRELPSSIEHLNGLVL 840

Query: 381  LNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP 440
            L L +CK  A +P SI  L SL+TL LSGC +L+ +PD +G ++ L +L  + + ++  P
Sbjct: 841  LKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLLKLKANGSGIQEVP 900

Query: 441  SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDL 500
            SS+ L+  L+ LS +GC G  S +    +L  +L  ++S    L L SL+ L SL KL+L
Sbjct: 901  SSITLLTRLQVLSLAGCKGGGSKSR---NLALSL--RASPTDGLRLSSLTVLHSLKKLNL 955

Query: 501  SDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL 560
            SD  L EGA+PSD+ +L  L  L LS+NNF+T+P S++ L +L+ L +E CK LQ LP+L
Sbjct: 956  SDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRRLIVEHCKNLQSLPEL 1015

Query: 561  PPNIIFVKVNGCSSLVTL---LGALKLCKSNGIVIECIDSLKLLRNNG----WAILMLRE 613
            P +I  +  N C+SL T      A  L K      E  +  +L+ N       AIL    
Sbjct: 1016 PSSIKELLANDCTSLETFSYPSSAYPLRKFGDFNFEFSNCFRLVGNEQSDTVEAILQEIR 1075

Query: 614  YLEAVSDPL-----------KDFSTVIPGSKIPKWFMYQNEGSSITVTRPSYLYNMNKIV 662
             + ++   +             +  V+PGS+IP+WF +Q+EG SITV  P   YN N I 
Sbjct: 1076 LVASIQKSMAPSEHSARYGESRYDAVVPGSRIPEWFTHQSEGDSITVELPPGCYNTNSI- 1134

Query: 663  GYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGFFITFGGKFSHSGSDHLWLLF--L 720
            G A C VFH P+ S     R   + +         GF +        S +DH+W  +  +
Sbjct: 1135 GLAACAVFH-PKFSMGKIGRSAYFSVN-----ESGGFSLDNTTSMHFSKADHIWFGYRLI 1188

Query: 721  SPRECYDRRWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPVYMHE 771
            S  +  D        H K++F  ++          G  VK+CG   VY  +
Sbjct: 1189 SGVDLRD--------HLKVAFATSKV--------PGEVVKKCGVRLVYEQD 1223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359486073\|ref\|XP_002272820.2\| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147770134\|emb\|CAN76615.1\| hypothetical protein VITISV_040107 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|451798988\|gb\|AGF69192.1\| TMV resistance protein N-like protein 6 [Vitis labrusca]	Back alignment and taxonomy information

>gi\|451798990\|gb\|AGF69193.1\| TMV resistance protein N-like protein 7 [Vitis labrusca]	Back alignment and taxonomy information

>gi\|359486071\|ref\|XP_002272667.2\| PREDICTED: TMV resistance protein N-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359496026\|ref\|XP_002277166.2\| PREDICTED: TMV resistance protein N-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224127726\|ref\|XP_002329162.1\| tir-nbs-lrr resistance protein [Populus trichocarpa] gi\|222870943\|gb\|EEF08074.1\| tir-nbs-lrr resistance protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225448053\|ref\|XP_002273151.1\| PREDICTED: TMV resistance protein N-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359493267\|ref\|XP_002271591.2\| PREDICTED: TMV resistance protein N-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		803
TAIR\|locus:2827629		1355	AT2G17050 [Arabidopsis thalian	0.549	0.325	0.353	2.9e-65
UNIPROTKB\|Q40392		1144	N "TMV resistance protein N" [	0.559	0.392	0.335	6.3e-64
TAIR\|locus:2175991		1294	AT5G17680 [Arabidopsis thalian	0.542	0.336	0.338	2.2e-60
TAIR\|locus:2147992		1189	AT5G11250 [Arabidopsis thalian	0.698	0.471	0.314	4.4e-60
TAIR\|locus:2094498		1981	AT3G25510 [Arabidopsis thalian	0.515	0.208	0.333	3.5e-58
TAIR\|locus:2053405		1215	AT2G14080 [Arabidopsis thalian	0.714	0.472	0.316	5.3e-58
TAIR\|locus:2130270		1449	RPP5 "RECOGNITION OF PERONOSPO	0.722	0.400	0.309	1.7e-55
TAIR\|locus:2146243		900	AT5G18360 [Arabidopsis thalian	0.498	0.444	0.355	1.5e-54
TAIR\|locus:2163426		1187	TAO1 "target of AVRB operation	0.613	0.415	0.313	1.2e-53
TAIR\|locus:2205824		1384	AT1G27170 [Arabidopsis thalian	0.755	0.438	0.310	1.7e-53

TAIR\|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 675 (242.7 bits), Expect = 2.9e-65, P = 2.9e-65
 Identities = 167/473 (35%), Positives = 265/473 (56%)

Query:     1 MNILQISFDGLQDSEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTV 60
             M + + +++ L ++EK +FLD+ACFF+    DYV ++ EGCGF P +GI VL+++ L+T+
Sbjct:   243 MEVFKSNYNALNENEKSMFLDIACFFRGEKADYVMQLFEGCGFFPHVGIYVLVDKCLVTI 302

Query:    61 DDYNTLGMHNSLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLR----KNTGSELVEGM 116
                  + MHN +Q +G+ I + +   E  +  RLW    ++ +L     K  G       
Sbjct:   303 VK-RKMEMHNLIQIVGKAI-SNEGTVELDRHVRLWDTSIIQPLLEDEETKLKGESKGTTE 360

Query:   117 IIDDYFFPVNEVHLSAK--AFSLMTNLGLLKI--NN------VQLLEGLEYLSNKLRLLD 166
              I+  F  ++ +    K  AF  M NL  LKI  +N      ++  E L+ L N+LRLL 
Sbjct:   361 DIEVIFLDMSNLKFFVKPDAFKSMHNLRFLKIYSSNPGKHQRIRFREALQSLPNELRLLH 420

Query:   167 WHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTE 226
             W  YPL+SLP +     +VE  M YS++++LW G K+L MLK+++LSHS++L++  +  +
Sbjct:   421 WEDYPLQSLPQHFDPTHLVELNMPYSKLQKLWGGTKNLEMLKMVRLSHSQDLVEIEELIK 480

Query:   227 APNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR--KFPHVVGSMECL 284
             + N+E + L+GCTK++   P+   H     ++ L+++ LSGC++++  +     G    L
Sbjct:   481 SKNIEVIDLQGCTKIQSF-PATR-H-----LQHLRVINLSGCVEIKSTQLEEFQGFPRNL 533

Query:   285 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK 344
             +EL L GT I+E+  SI HL  L  L L++CK L +LP+   +   L  L LSGCSKL+ 
Sbjct:   534 KELYLSGTGIREVTSSI-HLSSLEVLDLSNCKRLQNLPMGKGNLASLIKLMLSGCSKLQN 592

Query:   345 FPQIVTTMEDLSELNLDGTSITEVPSSIXXXXXXXXXXXXDCKNFARVPSSINGLKSLKT 404
                + T   +L EL L GTSI EVPSSI            +CK    +P  +  L SL  
Sbjct:   593 IQDLPT---NLKELYLAGTSIREVPSSICHLTQLVVFDAENCKKLQDLPMGMGNLISLTM 649

Query:   405 LNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGC 457
             L LSGC +L ++PD      +L  L+++ET +++ PSS   +  L +L  + C
Sbjct:   650 LILSGCSELRSIPDL---PRNLRHLNLAETPIKKLPSSFEDLTKLVSLDLNHC 699

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB\|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]	Back alignment and assigned GO terms

TAIR\|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		803
PLN03210		1153	PLN03210, PLN03210, Resistant to P	2e-66
PLN03210		1153	PLN03210, PLN03210, Resistant to P	3e-24
PLN03210		1153	PLN03210, PLN03210, Resistant to P	9e-19
COG4886		394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-11
PLN00113		968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113		968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113		968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113		968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
PLN00113		968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
COG4886		394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN03150		623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
COG4886		394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
PLN03150		623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

 Score =  239 bits (612), Expect = 2e-66
 Identities = 175/535 (32%), Positives = 270/535 (50%), Gaps = 90/535 (16%)

Query: 4   LQISFDGLQD-SEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDD 62
           L++S+DGL +  +K IF  +AC F     + +  +L        IG++ L+++SL+ V  
Sbjct: 426 LRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR- 484

Query: 63  YNTLGMHNSLQELGQLIVTRQSPEEPGKRSRLWRQEEVRHVLRKNTGSELVEGMIIDDYF 122
            + + MH+ LQE+G+ IV  QS  EPG+R  L   +++  VL  NTG++ V G+ +D   
Sbjct: 485 EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLD--I 541

Query: 123 FPVNEVHLSAKAFSLMTNLGLLKI--------NNVQ--LLEGLEYLSNKLRLLDWHRYPL 172
             ++E+H+   AF  M NL  LK           V+  L EG +YL  KLRLL W +YPL
Sbjct: 542 DEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL 601

Query: 173 KSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEE 232
           + +PSN + + +V+ +M  S++E+LW G+  L  L+ + L  S+NL + PD + A NLE 
Sbjct: 602 RCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLET 661

Query: 233 LYLEGCTKLRKVHPSLLLHNKL-----------------IFVESLKILILSGCLKLRKFP 275
           L L  C+ L ++  S+   NKL                 I ++SL  L LSGC +L+ FP
Sbjct: 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP 721

Query: 276 HVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 335
            +  +   +  L LD T I+E P ++  L  L +L L + K+                  
Sbjct: 722 DISTN---ISWLDLDETAIEEFPSNL-RLENLDELILCEMKS------------------ 759

Query: 336 LSGCSKLKKFPQIVT---TM--EDLSELNL-DGTSITEVPSSIELLPGLELLNLNDCKNF 389
                KL +  Q +T   TM    L+ L L D  S+ E+PSSI+ L  LE L + +C N 
Sbjct: 760 ----EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815

Query: 390 ARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNL 449
             +P+ IN L+SL++L+LSGC +L   PD      ++ +L++S T +   P  +    NL
Sbjct: 816 ETLPTGIN-LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNL 871

Query: 450 RTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCG 504
             L  +GCN              NL   S         ++S L+ L  +D SDCG
Sbjct: 872 SFLDMNGCN--------------NLQRVS--------LNISKLKHLETVDFSDCG 904

syringae 6; Provisional. Length = 1153

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|178695 PLN03150, PLN03150, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|178695 PLN03150, PLN03150, hypothetical protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		803
PLN03210		1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	99.97
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.95
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.92
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.92
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.92
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.87
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.72
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.72
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.7
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.57
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.56
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.49
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.47
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.45
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	99.35
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.88
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.87
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.87
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	98.87
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.85
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	98.84
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.76
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.73
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.7
KOG4341		483	consensus F-box protein containing LRR [General fu	98.39
PRK15386		426	type III secretion protein GogB; Provisional	98.39
PLN03150		623	hypothetical protein; Provisional	98.38
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	98.34
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
PLN03150		623	hypothetical protein; Provisional	98.29
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	98.2
PRK15386		426	type III secretion protein GogB; Provisional	98.16
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.13
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.11
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.04
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.03
KOG4341		483	consensus F-box protein containing LRR [General fu	98.01
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.97
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.96
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.79
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.74
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.69
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.41
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	97.4
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.4
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.32
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	97.18
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	97.16
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.11
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	96.98
KOG1947		482	consensus Leucine rich repeat proteins, some prote	96.82
KOG1947		482	consensus Leucine rich repeat proteins, some prote	96.65
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.1
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.68
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.1
KOG2123		388	consensus Uncharacterized conserved protein [Funct	94.99
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.34
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.29
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.75
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.19
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.93
PF07725		20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	90.29
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.95
KOG4308		478	consensus LRR-containing protein [Function unknown	88.73
smart00369		26	LRR_TYP Leucine-rich repeats, typical (most popula	87.52
smart00370		26	LRR Leucine-rich repeats, outliers.	87.52
KOG4308		478	consensus LRR-containing protein [Function unknown	87.35
KOG3864		221	consensus Uncharacterized conserved protein [Funct	85.68
KOG0473		326	consensus Leucine-rich repeat protein [Function un	83.86
KOG3864		221	consensus Uncharacterized conserved protein [Funct	81.37
smart00370		26	LRR Leucine-rich repeats, outliers.	80.94
smart00369		26	LRR_TYP Leucine-rich repeats, typical (most popula	80.94

>PLN03210 Resistant to P	Back alignment and domain information

Probab=100.00  E-value=8.5e-68  Score=649.26  Aligned_cols=643  Identities=28%  Similarity=0.450  Sum_probs=432.3

Q ss_pred             CCeeEEeccCCCh-hhhcceeeeecccCccChHHHHHHhhhCCCCchhhhHhhhccCceEEeCCCceeehHHHHHHHHHH
Q 003683            1 MNILQISFDGLQD-SEKKIFLDVACFFKRWDRDYVAKILEGCGFSPVIGIEVLIERSLLTVDDYNTLGMHNSLQELGQLI   79 (803)
Q Consensus         1 ~~~L~lSYd~L~~-~~k~cFL~~a~fp~~~~~~~l~~~w~a~gf~~~~~~~~Li~r~li~~~~~~~v~mHdll~d~~~~i   79 (803)
                      +++|++|||+|++ .+|.||+||||||++.+++.+..++.++|+.++.|++.|++||||++. .+.++|||++|+||++|
T Consensus       423 ~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i  501 (1153)
T PLN03210        423 EKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEI  501 (1153)
T ss_pred             HHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHH
Confidence            3589999999987 589999999999999999999988888899899999999999999998 68899999999999999


Q ss_pred             HhhcCCCCCCCccccccchHHHHHHhhCcCCcceEEEEEecCCCCccccccCHHhhhcCCCcceEEecCc----------
Q 003683           80 VTRQSPEEPGKRSRLWRQEEVRHVLRKNTGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNV----------  149 (803)
Q Consensus        80 ~~~e~~~~~~~~~~l~~~~di~~~l~~~~~~~~i~~i~l~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~----------  149 (803)
                      +++++ .+|++|+|+|+++|+++++.+++|++++++|+++.. .. .+..+...+|.+|++|++|.+..+          
T Consensus       502 ~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~-~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~  578 (1153)
T PLN03210        502 VRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID-EI-DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRW  578 (1153)
T ss_pred             HHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC-cc-ceeeecHHHHhcCccccEEEEeccccccccccee
Confidence            99998 789999999999999999999999999999999988 77 678899999999999999999654          


Q ss_pred             cccCccccCCCCccEEEecCCCCCCCCCCCCCCCeeEEEeCCCCchhccccccCCCCccEEEecCCCCCCCCCCCCCCCC
Q 003683          150 QLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPN  229 (803)
Q Consensus       150 ~l~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~L~~L~~L~L~~~~~~~~~~~l~~l~~  229 (803)
                      ++++++..+|.+||+|+|.+|+++.+|..+.+.+|++|+|+++.++.+|.++..+++|+.|+|+++.....+|+++.+++
T Consensus       579 ~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~  658 (1153)
T PLN03210        579 HLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATN  658 (1153)
T ss_pred             ecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCc
Confidence            35667888899999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             ccEEeccCCccccccCccccccCcccccCCccEEEecCCCCCCCCCcccCCCCcCcEEEccCccccccchhhhhcCCCCE
Q 003683          230 LEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQ  309 (803)
Q Consensus       230 L~~L~L~~~~~l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~  309 (803)
                      |++|++++|..+..+|.+++.                                                     +++|+.
T Consensus       659 Le~L~L~~c~~L~~lp~si~~-----------------------------------------------------L~~L~~  685 (1153)
T PLN03210        659 LETLKLSDCSSLVELPSSIQY-----------------------------------------------------LNKLED  685 (1153)
T ss_pred             ccEEEecCCCCccccchhhhc-----------------------------------------------------cCCCCE
Confidence            999999999777766654443                                                     333344


Q ss_pred             EecCCCCCCCCCCccCcCCCCCcEEEecCCCCCccCcccccccccccccccCcccccccCcccCCCCCCCEEecCCCCCC
Q 003683          310 LTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNF  389 (803)
Q Consensus       310 L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~~~~~  389 (803)
                      |++++|..++.+|..+ ++++|+.|++++|..++.+|..   .++|+.|++++|.+..+|..+ .+++|+.|.+.++...
T Consensus       686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE  760 (1153)
T ss_pred             EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchh
Confidence            5555555555555544 4666666666666655555543   245666677777766666554 4566666666654321


Q ss_pred             cc-------ccccccCCCCCCEEEecCCCCCCcCCcccCCCCCCcEEecCCCc-ccCCCchhhhhccCceEeccCCCCCC
Q 003683          390 AR-------VPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPP  461 (803)
Q Consensus       390 ~~-------~p~~~~~l~~L~~L~L~~c~~~~~~~~~~~~l~~L~~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~~~~~~  461 (803)
                      ..       .+......++|+.|++++|.....+|..++++++|+.|++++|. +..+|..+ .+++|+.|++++|..+.
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR  839 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence            10       11111223556666666666666666666666666666665542 33444433 45555555555554322


Q ss_pred             CCCcccccccccccCCcchhhhccCCCCCCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCEEecCCC-CCcccchhhhcc
Q 003683          462 SSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN-NFVTLPASINSL  540 (803)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~Ls~n-~l~~lp~~i~~l  540 (803)
                      ..                      |.   ..++|+.|+|++|.+.  .+|..+..+++|+.|+|++| +++.+|..+..+
T Consensus       840 ~~----------------------p~---~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L  892 (1153)
T PLN03210        840 TF----------------------PD---ISTNISDLNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL  892 (1153)
T ss_pred             cc----------------------cc---cccccCEeECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence            11                      00   1134555555555542  34555555555555555542 344455445555


Q ss_pred             cccCccccccccccCcCC--CCCCCceEEEecCCccceeecccc-ccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhh
Q 003683          541 LNLKELEMEDCKRLQFLP--QLPPNIIFVKVNGCSSLVTLLGAL-KLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEA  617 (803)
Q Consensus       541 ~~L~~L~L~~c~~L~~lp--~lp~sL~~L~~~~C~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (803)
                      ++|+.|++++|..|+.++  ..|.++..+. .++.+  .++... ....+|.++....                  .++.
T Consensus       893 ~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~-~n~~~--~~p~~~~l~f~nC~~L~~~a------------------~l~~  951 (1153)
T PLN03210        893 KHLETVDFSDCGALTEASWNGSPSEVAMAT-DNIHS--KLPSTVCINFINCFNLDQEA------------------LLQQ  951 (1153)
T ss_pred             cCCCeeecCCCcccccccCCCCchhhhhhc-ccccc--cCCchhccccccccCCCchh------------------hhcc
Confidence            555555555555444332  1111111000 00000  000000 0001333221100                  0110


Q ss_pred             ccCCCCceEEeecCCCCCCCccccCCCceEE-EEcCCCCcCCCcEEEEEEEEEEeeCCCcccccccCCcceeEEEEecCC
Q 003683          618 VSDPLKDFSTVIPGSKIPKWFMYQNEGSSIT-VTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSD  696 (803)
Q Consensus       618 ~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~c~~~~~~  696 (803)
                         ......+++||.++|+||.||+.|++++ |.+|+.|. ...+.||++|+|+++......  ...+.+.+.|.+.+..
T Consensus       952 ---~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~~~--~~~~~~~~~c~~~~~~ 1025 (1153)
T PLN03210        952 ---QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSESFFII--SVSFDIQVCCRFIDRL 1025 (1153)
T ss_pred             ---cccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCccccC--CCceeEEEEEEEECCC
Confidence               1122357899999999999999999998 99999888 678999999999976654211  1245567788877644


Q ss_pred             CCeeEEecccccCCCCCeEEEEEecCcccc----------cc--ccccccCeEEEEEeccccccccCCCCCceEEEEeee
Q 003683          697 RGFFITFGGKFSHSGSDHLWLLFLSPRECY----------DR--RWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGF  764 (803)
Q Consensus       697 ~~~~~~~~~~~~~~~s~h~~~~~~~~~~~~----------~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vk~cGv  764 (803)
                      +....       ....+|+|+.|.....+.          +.  .+...++|+.+.|.    ..   .....++||+|||
T Consensus      1026 ~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~---~~~~~~~~~~cg~ 1091 (1153)
T PLN03210       1026 GNHFD-------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFR----LT---NKNSQLKLKGCGI 1091 (1153)
T ss_pred             CCccc-------cCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEE----Ee---cCCCCeEEEeeeE
Confidence            43321       113444444443321110          10  11224678777775    11   1223479999999


Q ss_pred             eeeecccccc
Q 003683          765 HPVYMHEVEE  774 (803)
Q Consensus       765 ~liy~~~~~~  774 (803)
                      +++|+.+..|
T Consensus      1092 ~~~~~~~~~~ 1101 (1153)
T PLN03210       1092 RLSEDDSSLN 1101 (1153)
T ss_pred             EEeccCCCcc
Confidence            9999665443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily	Back alignment and domain information

>smart00370 LRR Leucine-rich repeats, outliers	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00370 LRR Leucine-rich repeats, outliers	Back alignment and domain information

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		803
4fcg_A		328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-10
4fcg_A		328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-08
4fcg_A		328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Back alignment and structure

Iteration: 1

Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 14/200 (7%) Query: 269 LKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN-LSSLPVAISS 327 + L +FP + LQ +D + ELP + + GL LTL +N L +LP +I+S Sbjct: 91 VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIAS 148 Query: 328 FQCLRNLKLSGCSKLKKFPQIVTTME---------DLSELNLDGTSITEVPSSIXXXXXX 378 LR L + C +L + P+ + + + +L L L+ T I +P+SI Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208 Query: 379 XXXXXXDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE-TAVR 437 + A P +I+ L L+ L+L GC L N P G L+ L + + + + Sbjct: 209 KSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 Query: 438 RPPSSVFLMKNLRTLSFSGC 457 P + + L L GC Sbjct: 268 TLPLDIHRLTQLEKLDLRGC 287

PyMOL of 4fcg

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Back alignment and structure

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		803
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	8e-54
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	2e-50
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	3e-42
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-40
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	6e-40
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	6e-34
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	3e-28
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	3e-27
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	4e-21
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	5e-21
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	4e-33
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	1e-30
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	5e-29
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	5e-13
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	6e-29
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	4e-28
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	7e-25
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	5e-28
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	9e-11
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	7e-28
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	2e-20
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	5e-16
1o6v_A		466	Internalin A; bacterial infection, extracellular r	1e-27
1o6v_A		466	Internalin A; bacterial infection, extracellular r	4e-24
1o6v_A		466	Internalin A; bacterial infection, extracellular r	9e-15
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-26
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	6e-20
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-21
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	1e-24
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	1e-24
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	1e-24
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	4e-23
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-24
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-21
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-24
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-23
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-21
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-20
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-15
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	3e-22
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	9e-21
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-23
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-22
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-17
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-17
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-22
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-13
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-22
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-22
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-15
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	2e-21
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	6e-10
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-21
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-20
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-20
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	4e-21
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-10
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	7e-18
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	7e-10
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	8e-15
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-16
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	5e-14
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	5e-08
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-16
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-07
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	7e-16
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	8e-16
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	3e-11
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-16
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-16
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	5e-10
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	7e-15
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	8e-12
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	9e-10
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-12
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-10
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	5e-12
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	6e-11
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	6e-06
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	6e-10
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	8e-05
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	7e-10
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	2e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

 Score =  188 bits (480), Expect = 8e-54
 Identities = 69/326 (21%), Positives = 121/326 (37%), Gaps = 42/326 (12%)

Query: 250 LHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQ 309
            H+        + L   G   LR +  V+   +       +            +     Q
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW---HSAWRQANS-NNPQ 59

Query: 310 LTLNDCKNLSSLPVAI--SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE 367
           +     + L +    +  ++      L+L     L +FP     +  L  + +D   + E
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLME 118

Query: 368 VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVE--- 424
           +P +++   GLE L L        +P+SI  L  L+ L++  C +L  +P+ L   +   
Sbjct: 119 LPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 425 ------SLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 478
                 +L+ L +  T +R  P+S+  ++NL++L                          
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-------------------- 217

Query: 479 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLS-KNNFVTLPASI 537
             L AL  P++  L  L +LDL  C       P   G    L  L L   +N +TLP  I
Sbjct: 218 --LSAL-GPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 538 NSLLNLKELEMEDCKRLQFLPQLPPN 563
           + L  L++L++  C  L  LP L   
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQ 299

PyMOL of 4fcg

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		803
d1xkua_		305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-14
d1xkua_		305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1p9ag_		266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1ogqa_		313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d1ogqa_		313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-05
d1ozna_		284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1m9la_		198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	5e-05
d1h6ta2		210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d1dcea3		124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2omxa2		199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d2omxa2		199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d2ca6a1		344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 8e-14
 Identities = 52/299 (17%), Positives = 99/299 (33%), Gaps = 25/299 (8%)

Query: 228 PNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQEL 287
           P+   L L+   K+ ++      + K     +L  LIL      +  P     +  L+ L
Sbjct: 31  PDTALLDLQNN-KITEIKDGDFKNLK-----NLHTLILINNKISKISPGAFAPLVKLERL 84

Query: 288 LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQ 347
            L    +KELP  +      +++  N+   +        +   +  L  +          
Sbjct: 85  YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 348 IVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 407
               M+ LS + +  T+IT +P    L P L  L+L+  K      +S+ GL +L  L L
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 408 SGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWH 467
           S          +L     L EL ++   + + P  +   K ++ +               
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN----------- 251

Query: 468 LHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI-PSDIGNLHSLNELYL 525
                N +              +   S + + L    +    I PS    ++    + L
Sbjct: 252 -----NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

PyMOL of d1xkua_

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		803
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.98
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.94
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.92
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.92
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.9
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.79
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.77
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.61
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.58
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d2ifga3		156	High affinity nerve growth factor receptor, N-term	99.12
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.82
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.14

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.5e-31  Score=183.84  Aligned_cols=339  Identities=19%  Similarity=0.243  Sum_probs=190.2

Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             84379844999999999889899159990788801114355688886599804997998899988999855896047745
Q 003683          161 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK  240 (803)
Q Consensus       161 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~  240 (803)
                      +|+.|+++++.++++...-.+++|++|++++|+++.++. ++++++|++|++++|.. ..+++++.+++|+.|++.++. 
T Consensus        45 ~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i-~~i~~l~~l~~L~~L~~~~~~-  121 (384)
T d2omza2          45 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLFNNQ-  121 (384)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC-
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC-
T ss_conf             878998999898776242458999989681881798863-34771101030134333-222211123343334433222-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCEEECCCCCCCCC
Q ss_conf             63238520035832246974299725997888787322788767499805866544551133118987883379878887
Q 003683          241 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS  320 (803)
Q Consensus       241 l~~i~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~l~~  320 (803)
                      ...++....       ...+.......+...........................    .+.............+  ...
T Consensus       122 ~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~  188 (384)
T d2omza2         122 ITDIDPLKN-------LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK----PLANLTTLERLDISSN--KVS  188 (384)
T ss_dssp             CCCCGGGTT-------CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG----GGTTCTTCCEEECCSS--CCC
T ss_pred             CCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHCCCCCCCCCCCCCC--CCC
T ss_conf             222222222-------222211213466313100232222112222212322011----1124542110112224--333


Q ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             88347688777689712899986474000265634501147635611285347999998894479888763343334998
Q 003683          321 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK  400 (803)
Q Consensus       321 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~~~~l~  400 (803)
                      .......+++++.+.++++......+  ...+++|+.|+++++.+..++ .+..+++|+.+++.+|..... + .+..++
T Consensus       189 ~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~-~-~~~~~~  263 (384)
T d2omza2         189 DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL-A-PLSGLT  263 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC-G-GGTTCT
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCC-HHHCCCCCCHHCCCCCCCCCC-C-CCCCCC
T ss_conf             21100223532333035774478786--444577878888777778961-343256534100446744787-7-535546


Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             99899812877998678645788987589557985557981022203574672468889999986346655310377520
Q 003683          401 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSC  480 (803)
Q Consensus       401 ~L~~L~ls~c~~l~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (803)
                      +|+.|+++++.... ++ .+..++.++.+.+..+.+..++ .+..+++++.|++++|....                   
T Consensus       264 ~L~~L~l~~~~l~~-~~-~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~-------------------  321 (384)
T d2omza2         264 KLTELKLGANQISN-IS-PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISD-------------------  321 (384)
T ss_dssp             TCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSC-------------------
T ss_pred             CCCEEECCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCCC-CCCHHCCCCEEECCCCCCCC-------------------
T ss_conf             68775456744578-77-3235652222332323333322-10000246767777887789-------------------


Q ss_pred             HHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf             13115999789998889947799999898788778988897786688877334365550666670022253
Q 003683          481 LVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC  551 (803)
Q Consensus       481 ~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  551 (803)
                           ...+..+++|+.|++++|++.+  ++ .+..+++|+.|++++|+++.+++ +..+++|+.|++++|
T Consensus       322 -----l~~l~~l~~L~~L~L~~n~l~~--l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         322 -----ISPVSSLTKLQRLFFANNKVSD--VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -----CGGGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             -----CCCCCCCCCCCEEECCCCCCCC--CH-HHCCCCCCCEEECCCCCCCCCHH-HCCCCCCCEEECCCC
T ss_conf             -----8453668988989898998999--74-67089999989897995899800-003999999639789

PyMOL of d2omza2

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure