Citrus Sinensis ID: 003702

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-

MAAESACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVGQTPSSPLLPDKVAVIESPEHDTESG

cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHcccccccccEEEEEEEEEccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHccccccEEEEccccccccccccccccccccccccHHHHccccccccccEEEEEEcccccccccccccccccccccccccccc

ccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccEEccccccccEEEEEEEccccccHHHHHHHHHHccccccccEEEEEEEEEEcccccccEEEEccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccHHHHHHHHHHHHHccEEEEEEEccccccccccEccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccccHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHccccEEEEEcccccccccccccHHHccccccccHHcccccccccEEEEEEEEEccccccccccccccccccccccccccc

maaesacpapmkatsngvfqgdnpldyalPLAILQICLVVLLTRLLAFVlrplrqprVIAEIVGGillgpsalgrnkdflkavfpsrsltvlDTLANLGLLFFLFLVglemdpksIRRAGKKALSIALGgislpfalgigtSFALRATvskgvdqapfLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALsgsgrsplVSLWVLLCGCGFVIGCVFIVTPIFkwmekrcpdgepvkELYVCVTLSIVLLSgfvtdsigiHALFGAFitgvlvpkegpfaGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIgkdrkvlnDQTFAIMVLMAVFTTFITTPLVmavykpnqktskVAYKHrtikrkdpnselrIFACfhtasnvptMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARkngvpfwnkgkrsdcdQVVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILpfhkhqrfdgvLETTRSEFRWVNKRVLEHASCSVGIlvdrglggsthVAASNVSSVITVLFFGGNDDQEALAYGArmaehpgislnvvrflpsseisgeieadtndaestgesaDEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVksdcpelgpvgsllispdfstsASVLVVQQYvgqtpsspllpdkvaviespehdtesg

maaesacpapmkatsnGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAvykpnqktskvaykhrtikrkdpnseLRIFACfhtasnvptMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNgvpfwnkgkrsDCDQVVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPfhkhqrfdgVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVGqtpsspllpdkvaviespehdtesg

MAAESACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANlgllfflflvglEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRmamsaaavndvaawillalavalSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVGQTPSSPLLPDKVAVIESPEHDTESG

*****************VFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIK*****SELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFL************************EIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVG*************************

***E*ACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKP***********************RIFACFHTASNVPTMINLIE*********GLCVYAMHLMELSERSSA*************************VVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHK**************FRWVNKRVLEHASCSVGILVDRGLG*********VSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSS*******************ADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMP*************CPELGPVGSLLISPDFSTSASVLVVQ*****************************

************ATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEISGEIE***********SADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVGQTPSSPLLPDKVAVIE*********

***ESACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKA*************SDCDQVVVAFEAFRQLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSS*************ESTGESADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVGQ************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		801	2.2.26 [Sep-21-2011]
Q9FFR9		810	Cation/H(+) antiporter 18	yes	no	0.997	0.986	0.671	0.0
Q9SUQ7		820	Cation/H(+) antiporter 17	no	no	0.990	0.967	0.663	0.0
Q9LUN4		800	Cation/H(+) antiporter 19	no	no	0.976	0.977	0.650	0.0
Q1HDT3		811	Cation/H(+) antiporter 16	no	no	0.947	0.935	0.607	0.0
Q9SIT5		821	Cation/H(+) antiporter 15	no	no	0.972	0.948	0.497	0.0
Q9M353		842	Cation/H(+) antiporter 20	no	no	0.948	0.902	0.512	0.0
Q8VYD4		867	Cation/H(+) antiporter 23	no	no	0.931	0.860	0.361	1e-124
Q9SKA9		832	Cation/H(+) antiporter 21	no	no	0.928	0.894	0.350	1e-117
Q9LMJ1		829	Cation/H(+) antiporter 14	no	no	0.947	0.915	0.314	1e-104
O22920		831	Cation/H(+) symporter 13	no	no	0.941	0.907	0.323	1e-101

>sp\|Q9FFR9\|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1	Back alignment and function desciption

 Score = 1083 bits (2800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/810 (67%), Positives = 660/810 (81%), Gaps = 11/810 (1%)

Query: 1   MAAES--ACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRV 58
           MA  S  ACPAPMKATSNGVFQGDNP+D+ALPLAILQI +V++LTR+LA++LRPLRQPRV
Sbjct: 1   MATNSTKACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRV 60

Query: 59  IAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRR 118
           IAE++GGI+LGPS LGR+K FL AVFP +SLTVL+TLANLGLLFFLFL GLE+D K++RR
Sbjct: 61  IAEVIGGIMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRR 120

Query: 119 AGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARIL 178
            GKKAL IAL GI+LPFALGIG+SF L+AT+SKGV+   FL+FMGVA SITAFPVLARIL
Sbjct: 121 TGKKALGIALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARIL 180

Query: 179 AELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCV 238
           AELKLLTT++GR+AMSAAAVNDVAAWILLALA+ALSGS  SPLVSLWV L GC FVIG  
Sbjct: 181 AELKLLTTEIGRLAMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGAS 240

Query: 239 FIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKE 298
           FI+ PIF+W+ +RC +GEP++E Y+C TL++VL+ GF+TD+IGIH++FGAF+ GVL+PKE
Sbjct: 241 FIIPPIFRWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKE 300

Query: 299 GPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGT 358
           GPFAGALVEKVEDLVSGL LPLYFV+SGLKTN+ TIQG QSWG LVLV  TACFGKI+GT
Sbjct: 301 GPFAGALVEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGT 360

Query: 359 VAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFIT 418
           + +SLA +IP +EA+ LGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMA+FTTFIT
Sbjct: 361 LGVSLAFKIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFIT 420

Query: 419 TPLVMAVYKPNQKTSKVA-YKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTE 477
           TP+VMAVYKP ++  K   YKHR ++R++ N++LRI  CFH A ++P+MINL+EASRG E
Sbjct: 421 TPVVMAVYKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIE 480

Query: 478 KKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWN-KGKRSDCDQVVVAFEAFRQLSR 536
           K EGLCVYA+HL ELSERSSAILMVHK RKNG+PFWN +G  +D DQVVVAF+AF+QLSR
Sbjct: 481 KGEGLCVYALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSR 540

Query: 537 VFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVL 596
           V +RPMTAIS+M  +HEDIC++A RK+AA++ILPFHKHQ+ DG LETTR ++RWVN+RVL
Sbjct: 541 VNVRPMTAISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVL 600

Query: 597 EHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNV 656
             A CSVGI VDRGLGGS+ V+A +VS  + VLFFGG DD+EALAYG RMAEHPGI L V
Sbjct: 601 LQAPCSVGIFVDRGLGGSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTV 660

Query: 657 VRFLPSSEISGEIEADTNDAESTGE------SADEIFLAEVKQKFKNLEAFKYEERWIKN 710
            RF+ S E  GEI        +          +DE  ++E+++     E+ K+ E+ I+N
Sbjct: 661 FRFVVSPERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIEN 720

Query: 711 TSETV-DVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVL 769
            +  V   + E  + +LFLVGRMP    A  ++  S+CPELGPVGSLLISP+ ST ASVL
Sbjct: 721 AAVDVRSAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVL 780

Query: 770 VVQQYVGQTPSSPLLPDKVAVIESPEHDTE 799
           V+QQY G   +  L   +  V+ S + D++
Sbjct: 781 VIQQYNGTGIAPDLGAAETEVLTSTDKDSD 810

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SUQ7\|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1	Back alignment and function description

>sp\|Q9LUN4\|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1	Back alignment and function description

>sp\|Q1HDT3\|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1	Back alignment and function description

>sp\|Q9SIT5\|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1	Back alignment and function description

>sp\|Q9M353\|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1	Back alignment and function description

>sp\|Q8VYD4\|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKA9\|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2	Back alignment and function description

>sp\|Q9LMJ1\|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1	Back alignment and function description

>sp\|O22920\|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		801
224075052		806	cation proton exchanger [Populus trichoc	0.987	0.981	0.752	0.0
255537657		805	Na(+)/H(+) antiporter, putative [Ricinus	0.993	0.988	0.747	0.0
225426073		787	PREDICTED: cation/H(+) antiporter 18 [Vi	0.980	0.997	0.723	0.0
147845377		787	hypothetical protein VITISV_031075 [Viti	0.980	0.997	0.717	0.0
255537655		805	Na(+)/H(+) antiporter, putative [Ricinus	0.962	0.957	0.720	0.0
356497291		806	PREDICTED: cation/H(+) antiporter 18-lik	0.995	0.988	0.688	0.0
224053817		804	cation proton exchanger [Populus trichoc	0.958	0.955	0.709	0.0
356540416		805	PREDICTED: cation/H(+) antiporter 18-lik	0.991	0.986	0.685	0.0
225426075		786	PREDICTED: cation/H(+) antiporter 18 [Vi	0.966	0.984	0.732	0.0
225426078		796	PREDICTED: cation/H(+) antiporter 18 [Vi	0.983	0.989	0.706	0.0

>gi\|224075052\|ref\|XP_002304537.1\| cation proton exchanger [Populus trichocarpa] gi\|222841969\|gb\|EEE79516.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1199 bits (3101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/797 (75%), Positives = 680/797 (85%), Gaps = 6/797 (0%)

Query: 6   ACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGG 65
           +CP PMKATSNGVFQGDNPLDYALPLAILQICLVVLLTR+LAF+LRPLRQPRVIAEIVGG
Sbjct: 11  SCPKPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRILAFLLRPLRQPRVIAEIVGG 70

Query: 66  ILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALS 125
           ILLGPSALGRNK +L  VFP++SL VLDTLANLGLLFFLFL+GLE+D KS+RR GKKAL 
Sbjct: 71  ILLGPSALGRNKHYLDKVFPAKSLPVLDTLANLGLLFFLFLIGLELDLKSLRRTGKKALG 130

Query: 126 IALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAELKLLT 185
           IA  GI LPF LGIGTSFALR T+SKG D+APFL+FMGVA SITAFPVLARILAELKLLT
Sbjct: 131 IAAAGIGLPFLLGIGTSFALRGTISKGADKAPFLVFMGVALSITAFPVLARILAELKLLT 190

Query: 186 TDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIF 245
           TDVGRMAMSAAAVNDVAAWILLALA+ALSG+G S LVSLWV LCG GFV+ CVFI+ PIF
Sbjct: 191 TDVGRMAMSAAAVNDVAAWILLALAIALSGTGHSALVSLWVFLCGSGFVLCCVFIIPPIF 250

Query: 246 KWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGAL 305
           KWM  RCP+GEPV E+YVC TL+ VL +GFVTDSIGIHALFGAF+ GVL+PKEG FAGAL
Sbjct: 251 KWMANRCPEGEPVDEIYVCATLTAVLAAGFVTDSIGIHALFGAFVVGVLIPKEGAFAGAL 310

Query: 306 VEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLAC 365
           VEKVED+VSGL LPLYFVSSGLKTN+ TIQGLQSWG LVLVI TACFGKIVGTV +SL C
Sbjct: 311 VEKVEDIVSGLFLPLYFVSSGLKTNVATIQGLQSWGLLVLVITTACFGKIVGTVGVSLLC 370

Query: 366 RIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAV 425
           R+PF+EA+A+GFLMNTKGLVELIVLNIGKDRKVLND+TF+IMVLMA+FTTFITTPLVMAV
Sbjct: 371 RMPFQEAVAMGFLMNTKGLVELIVLNIGKDRKVLNDETFSIMVLMAIFTTFITTPLVMAV 430

Query: 426 YKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVY 485
           YKP ++ S+  YK R I+R DPN++LRI ACFH+  +VPTMINLIEASRGT+++E LCVY
Sbjct: 431 YKPAKRASRADYKIRKIERNDPNTQLRILACFHSTRDVPTMINLIEASRGTDRRERLCVY 490

Query: 486 AMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAFRQLSRVFIRPMTAI 545
           AMHLMEL+ERSSAILMVHK RKNG+PFWNK ++S  +QVVVAFEAFRQLSRV I+P TAI
Sbjct: 491 AMHLMELTERSSAILMVHKVRKNGLPFWNKLQQSGNNQVVVAFEAFRQLSRVSIKPTTAI 550

Query: 546 SAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGI 605
           S M+ MHEDIC SAERKR A IILPFHKHQR DG  ETTR++FRWVN RVLE+A CSVGI
Sbjct: 551 SQMYDMHEDICESAERKRVAAIILPFHKHQRLDGTFETTRTDFRWVNMRVLENARCSVGI 610

Query: 606 LVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFLPSSEI 665
           LVDRGLGG THV ASNVS  +TVLFFGG DD+EALAYGARMAEHPGISL+V+RF  S EI
Sbjct: 611 LVDRGLGGGTHVPASNVSYSVTVLFFGGRDDREALAYGARMAEHPGISLSVIRFTASHEI 670

Query: 666 SGEI-EADTNDAES-TGESADEIFLAEVKQKFKNLEAFKYEERWIKNTSETVDVLGEFNK 723
            GEI   D ND  + + ES D+ F+AE K+K  N  + KYEER + N +ETV+   +F++
Sbjct: 671 VGEIVRVDINDNHNVSTESTDDEFIAEFKKKISNDSSVKYEERIVNNAAETVEAAKDFSR 730

Query: 724 CHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVGQTPSSPL 783
           C+LFLVGR+P     A L VK +CPELGPVG LLISPDF+T ASVLV+QQ+   +P S +
Sbjct: 731 CNLFLVGRVPQGPVVASLNVKVECPELGPVGHLLISPDFTTLASVLVMQQHA--SPGSVV 788

Query: 784 LPDKVAVIESPEHDTES 800
              +V   E P  D+E+
Sbjct: 789 GSTRVT--EMPAEDSET 803

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255537657\|ref\|XP_002509895.1\| Na(+)/H(+) antiporter, putative [Ricinus communis] gi\|223549794\|gb\|EEF51282.1\| Na(+)/H(+) antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225426073\|ref\|XP_002276249.1\| PREDICTED: cation/H(+) antiporter 18 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147845377\|emb\|CAN81240.1\| hypothetical protein VITISV_031075 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255537655\|ref\|XP_002509894.1\| Na(+)/H(+) antiporter, putative [Ricinus communis] gi\|223549793\|gb\|EEF51281.1\| Na(+)/H(+) antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356497291\|ref\|XP_003517494.1\| PREDICTED: cation/H(+) antiporter 18-like [Glycine max]	Back alignment and taxonomy information

>gi\|224053817\|ref\|XP_002297994.1\| cation proton exchanger [Populus trichocarpa] gi\|222845252\|gb\|EEE82799.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356540416\|ref\|XP_003538685.1\| PREDICTED: cation/H(+) antiporter 18-like [Glycine max]	Back alignment and taxonomy information

>gi\|225426075\|ref\|XP_002276346.1\| PREDICTED: cation/H(+) antiporter 18 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225426078\|ref\|XP_002272080.1\| PREDICTED: cation/H(+) antiporter 18 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		801
TAIR\|locus:2160457		810	CHX18 "cation/H+ exchanger 18"	0.997	0.986	0.635	3.5e-272
TAIR\|locus:2090462		800	CHX19 "cation/H+ exchanger 19"	0.966	0.967	0.617	1.5e-255
TAIR\|locus:2128484		820	CHX17 "cation/H+ exchanger 17"	0.868	0.848	0.656	7e-244
TAIR\|locus:2024578		811	CHX16 "cation/H+ exchanger 16"	0.971	0.959	0.566	2.8e-224
TAIR\|locus:2084370		842	CHX20 "cation/H+ exchanger 20"	0.779	0.741	0.506	1e-191
TAIR\|locus:2054152		821	CHX15 "cation/hydrogen exchang	0.983	0.959	0.464	3e-188
TAIR\|locus:2031968		867	CHX23 "cation/H+ exchanger 23"	0.931	0.860	0.342	2.8e-105
TAIR\|locus:2007392		829	CHX14 "cation/hydrogen exchang	0.941	0.909	0.301	1.8e-94
TAIR\|locus:2060827		831	ATCHX13 [Arabidopsis thaliana	0.940	0.906	0.309	1.6e-93
ASPGD\|ASPL0000061348		883	AN1290 [Emericella nidulans (t	0.520	0.472	0.386	4.1e-85

TAIR\|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2617 (926.3 bits), Expect = 3.5e-272, P = 3.5e-272
 Identities = 515/810 (63%), Positives = 630/810 (77%)

Query:     1 MAAES--ACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRV 58
             MA  S  ACPAPMKATSNGVFQGDNP+D+ALPLAILQI +V++LTR+LA++LRPLRQPRV
Sbjct:     1 MATNSTKACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRV 60

Query:    59 IAEIVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANXXXXXXXXXXXXEMDPKSIRR 118
             IAE++GGI+LGPS LGR+K FL AVFP +SLTVL+TLAN            E+D K++RR
Sbjct:    61 IAEVIGGIMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRR 120

Query:   119 AGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARIL 178
              GKKAL IAL GI+LPFALGIG+SF L+AT+SKGV+   FL+FMGVA SITAFPVLARIL
Sbjct:   121 TGKKALGIALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARIL 180

Query:   179 AELKLLTTDVGRXXXXXXXXXXXXXXXXXXXXXXXSGSGRSPLVSLWVLLCGCGFVIGCV 238
             AELKLLTT++GR                       SGS  SPLVSLWV L GC FVIG  
Sbjct:   181 AELKLLTTEIGRLAMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGAS 240

Query:   239 FIVTPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKE 298
             FI+ PIF+W+ +RC +GEP++E Y+C TL++VL+ GF+TD+IGIH++FGAF+ GVL+PKE
Sbjct:   241 FIIPPIFRWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKE 300

Query:   299 GPFAGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGT 358
             GPFAGALVEKVEDLVSGL LPLYFV+SGLKTN+ TIQG QSWG LVLV  TACFGKI+GT
Sbjct:   301 GPFAGALVEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGT 360

Query:   359 VAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFIT 418
             + +SLA +IP +EA+ LGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMA+FTTFIT
Sbjct:   361 LGVSLAFKIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFIT 420

Query:   419 TPLVMAVYKPNQKTSKVA-YKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTE 477
             TP+VMAVYKP ++  K   YKHR ++R++ N++LRI  CFH A ++P+MINL+EASRG E
Sbjct:   421 TPVVMAVYKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIE 480

Query:   478 KKEGLCVYAMHLMELSERSSAILMVHKARKNGVPFWNK-GKRSDCDQVVVAFEAFRQLSR 536
             K EGLCVYA+HL ELSERSSAILMVHK RKNG+PFWN+ G  +D DQVVVAF+AF+QLSR
Sbjct:   481 KGEGLCVYALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSR 540

Query:   537 VFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVL 596
             V +RPMTAIS+M  +HEDIC++A RK+AA++ILPFHKHQ+ DG LETTR ++RWVN+RVL
Sbjct:   541 VNVRPMTAISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVL 600

Query:   597 EHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNV 656
               A CSVGI VDRGLGGS+ V+A +VS  + VLFFGG DD+EALAYG RMAEHPGI L V
Sbjct:   601 LQAPCSVGIFVDRGLGGSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTV 660

Query:   657 VRFLPSSEISGEI---EADTNDAESTGES---ADEIFLAEVKQKFKNLEAFKYEERWIKN 710
              RF+ S E  GEI   E   N+ E+       +DE  ++E+++     E+ K+ E+ I+N
Sbjct:   661 FRFVVSPERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIEN 720

Query:   711 TSETV-DVLGEFNKCHLFLVGRMPVSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVL 769
              +  V   + E  + +LFLVGRMP    A  ++  S+CPELGPVGSLLISP+ ST ASVL
Sbjct:   721 AAVDVRSAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVL 780

Query:   770 VVQQYVGQTPSSPLLPDKVAVIESPEHDTE 799
             V+QQY G   +  L   +  V+ S + D++
Sbjct:   781 VIQQYNGTGIAPDLGAAETEVLTSTDKDSD 810

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR\|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000061348 AN1290 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFR9	CHX18_ARATH	No assigned EC number	0.6716	0.9975	0.9864	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		801
PLN03159		832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	0.0
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	1e-67
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	3e-64
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	1e-36
PRK03659		601	PRK03659, PRK03659, glutathione-regulated potassiu	2e-15
PRK03562		621	PRK03562, PRK03562, glutathione-regulated potassiu	6e-15
COG4651		408	COG4651, RosB, Kef-type K+ transport system, predi	3e-12
COG0025		429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	2e-08
PRK10669		558	PRK10669, PRK10669, putative cation:proton antipor	4e-04

>gnl\|CDD\|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	Back alignment and domain information

 Score =  881 bits (2279), Expect = 0.0
 Identities = 418/813 (51%), Positives = 572/813 (70%), Gaps = 25/813 (3%)

Query: 2   AAESACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAE 61
           A+   C APM  T+NG++QGDNPLD++LPL ILQ+ LVV+ TRLL F+L+P RQPRVI+E
Sbjct: 14  ASSVVCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISE 73

Query: 62  IVGGILLGPSALGRNKDFLKAVFPSRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGK 121
           I+GG++LGPS LG+++ F   +FP RS+ VL+T+ANLGLL+FLFLVG+EMD   IRR GK
Sbjct: 74  ILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGK 133

Query: 122 KALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVAFSITAFPVLARILAEL 181
           KAL+IA+ G++LPF +G+  SF     VS+ V Q  F++F+GVA S+TAFPVLARILAE+
Sbjct: 134 KALAIAIAGMALPFCIGLAFSFIFH-QVSRNVHQGTFILFLGVALSVTAFPVLARILAEI 192

Query: 182 KLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIV 241
           KL+ T++GR+AMSAA VND+ AWILLALA+AL+ +  + L SLWVLL    FV+ C ++V
Sbjct: 193 KLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVV 252

Query: 242 TPIFKWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPF 301
            P   W+ +R P+GE   E Y+C+ L+ V++SGF+TD+IG H++FGAF+ G+++P  GP 
Sbjct: 253 RPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPL 311

Query: 302 AGALVEKVEDLVSGLLLPLYFVSSGLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAM 361
              L+EK+ED VSGLLLPL+F  SGLKTN+T IQG  +WG LVLVI+ A  GKI+GT+ +
Sbjct: 312 GVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIII 371

Query: 362 SLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAVFTTFITTPL 421
           +    +PF+E + LGFLMNTKGLVE+IVLN+G+D++VL+D++FA+MVL+AV  T + TP+
Sbjct: 372 AFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPV 431

Query: 422 VMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTEKKEG 481
           V  VY+P ++   V YK RTI+R   ++ELR+  C HT  NVPT+INL+EAS  T K+  
Sbjct: 432 VTVVYRPARRL--VGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT-KRSP 488

Query: 482 LCVYAMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAFRQ-LSRVFIR 540
           +C+Y +HL+EL+ R+SA+L+VH  RK+G P  N+ +    D ++ AFE + Q    V ++
Sbjct: 489 ICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQS-DHIINAFENYEQHAGCVSVQ 547

Query: 541 PMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHAS 600
           P+TAIS    MHED+C+ AE KR ++II+PFHK Q  DG +E T   FR VN+ VL +A 
Sbjct: 548 PLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAP 607

Query: 601 CSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGARMAEHPGISLNVVRFL 660
           CSVGILVDRGL G+T +A++ VS  + VLFFGG DD+EALAY  RM+EHPGI+L V+RF+
Sbjct: 608 CSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFI 667

Query: 661 PSSE----ISGEIEADTNDAESTGESA-------DEIFLAEVKQKFKNLEAFKYEERWIK 709
           P  +     S    + ++    T E+        DE ++ E + +    E+  Y E+ + 
Sbjct: 668 PGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVS 727

Query: 710 NTSETVDVLGEFNKCH-LFLVGRMP--VSRAAAMLKVKSDCPELGPVGSLLISPDFSTSA 766
           N  ETV  +   +  H LF+VGR    +S   A L   S+CPELG +G LL S DF+ + 
Sbjct: 728 NGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATV 787

Query: 767 SVLVVQQYVGQTPSSPLLPDKVAVIESPEHDTE 799
           SVLVVQQYVG  P     PD +   ESP H  E
Sbjct: 788 SVLVVQQYVGTGP----QPDDLGTPESPAHSPE 816

Length = 832

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>gnl\|CDD\|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>gnl\|CDD\|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>gnl\|CDD\|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		801
PLN03159		832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669		558	putative cation:proton antiport protein; Provision	100.0
PRK03659		601	glutathione-regulated potassium-efflux system prot	100.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.97
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.97
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.95
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.94
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.93
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.85
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.77
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.77
PRK11175		305	universal stress protein UspE; Provisional	99.7
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.53
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	99.41
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.33
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	99.32
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	99.27
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	99.23
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	99.2
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.19
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	99.02
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.92
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.91
PRK15456		142	universal stress protein UspG; Provisional	98.85
PRK15005		144	universal stress protein F; Provisional	98.84
PRK15118		144	universal stress global response regulator UspA; P	98.81
PRK09982		142	universal stress protein UspD; Provisional	98.8
cd01987		124	USP_OKCHK USP domain is located between the N-term	98.8
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.75
PRK10116		142	universal stress protein UspC; Provisional	98.64
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.63
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.53
PRK11175		305	universal stress protein UspE; Provisional	98.51
cd00293		130	USP_Like Usp: Universal stress protein family. The	98.48
PRK15005		144	universal stress protein F; Provisional	98.45
PRK09982		142	universal stress protein UspD; Provisional	98.42
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.36
cd01987		124	USP_OKCHK USP domain is located between the N-term	98.31
PRK15456		142	universal stress protein UspG; Provisional	98.28
PRK10116		142	universal stress protein UspC; Provisional	98.19
PRK15118		144	universal stress global response regulator UspA; P	98.13
COG0589		154	UspA Universal stress protein UspA and related nuc	98.0
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	97.96
cd00293		130	USP_Like Usp: Universal stress protein family. The	97.88
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.82
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	97.73
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	97.61
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	97.44
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.4
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.35
TIGR00698		335	conserved hypothetical integral membrane protein.	97.21
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	97.18
COG0589		154	UspA Universal stress protein UspA and related nuc	96.96
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.93
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	96.89
COG0385		319	Predicted Na+-dependent transporter [General funct	96.89
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.81
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	96.65
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	96.63
COG3493		438	CitS Na+/citrate symporter [Energy production and	96.6
COG3180		352	AbrB Putative ammonia monooxygenase [General funct	96.36
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	96.34
PRK05274		326	2-keto-3-deoxygluconate permease; Provisional	96.27
PRK03562		621	glutathione-regulated potassium-efflux system prot	96.18
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	96.02
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.94
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.86
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	95.83
PRK03659		601	glutathione-regulated potassium-efflux system prot	95.82
PRK10669		558	putative cation:proton antiport protein; Provision	95.61
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	95.39
PRK10490		895	sensor protein KdpD; Provisional	95.11
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	95.09
PRK03818		552	putative transporter; Validated	95.07
PRK05326		562	potassium/proton antiporter; Reviewed	95.06
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	95.05
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	95.02
COG2855		334	Predicted membrane protein [Function unknown]	94.51
TIGR00841		286	bass bile acid transporter. Functionally character	94.48
TIGR01625		154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	94.0
PLN03159		832	cation/H(+) antiporter 15; Provisional	93.68
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	93.68
PRK04972		558	putative transporter; Provisional	93.41
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	93.32
PRK10490		895	sensor protein KdpD; Provisional	93.26
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	93.19
TIGR00698		335	conserved hypothetical integral membrane protein.	93.09
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	92.18
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.52
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.42
PRK04972		558	putative transporter; Provisional	89.4
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	89.22
COG2985		544	Predicted permease [General function prediction on	88.89
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	88.29
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	87.69
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	86.8
PF03547		385	Mem_trans: Membrane transport protein; InterPro: I	85.93
PRK03359		256	putative electron transfer flavoprotein FixA; Revi	85.68
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	85.59
PRK03818		552	putative transporter; Validated	85.32
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	85.02
COG2855		334	Predicted membrane protein [Function unknown]	84.36
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	83.99
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	83.49
COG3329		372	Predicted permease [General function prediction on	82.94
TIGR03136		399	malonate_biotin Na+-transporting malonate decarbox	81.06

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.2e-151  Score=1349.82  Aligned_cols=783  Identities=52%  Similarity=0.927  Sum_probs=701.3

Q ss_pred             CCCCCCccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCCcccccccccC
Q 003702            6 ACPAPMKATSNGVFQGDNPLDYALPLAILQICLVVLLTRLLAFVLRPLRQPRVIAEIVGGILLGPSALGRNKDFLKAVFP   85 (801)
Q Consensus         6 ~c~~~~~~~s~g~~~~~~~l~~~l~~~l~~i~lil~~~~~~~~ll~~l~~P~ii~~ilaGiilGP~~lg~~~~~~~~lfp   85 (801)
                      +|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|++..+.+.+||
T Consensus        18 ~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp   97 (832)
T PLN03159         18 VCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP   97 (832)
T ss_pred             ccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence            49865578999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHH
Q 003702           86 SRSLTVLDTLANLGLLFFLFLVGLEMDPKSIRRAGKKALSIALGGISLPFALGIGTSFALRATVSKGVDQAPFLIFMGVA  165 (801)
Q Consensus        86 ~~~~~~l~~l~~~gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~~l~lg~~  165 (801)
                      .++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+.+++++.. ...........+++|++
T Consensus        98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~l~~g~a  176 (832)
T PLN03159         98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVA  176 (832)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999988877743 21112223467899999


Q ss_pred             HhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003702          166 FSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCGFVIGCVFIVTPIF  245 (801)
Q Consensus       166 ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  245 (801)
                      +|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+......+|.++..+++++++.+++||++
T Consensus       177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~  256 (832)
T PLN03159        177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI  256 (832)
T ss_pred             HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998877655443334456777777788888889999999


Q ss_pred             HHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 003702          246 KWMEKRCPDGEPVKELYVCVTLSIVLLSGFVTDSIGIHALFGAFITGVLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSS  325 (801)
Q Consensus       246 ~~i~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~~g~~~~lgaf~aGl~l~~~~~~~~~l~~kl~~~~~~~~~plfF~~~  325 (801)
                      .|+.++++++++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +++++.+.+|++++++++|+|+||+++
T Consensus       257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~v  335 (832)
T PLN03159        257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS  335 (832)
T ss_pred             HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988888999999999999999999999999999999999999995 789999999999999999999999999


Q ss_pred             cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhhhHHHHHHHHhhcccCcCChhHHH
Q 003702          326 GLKTNITTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFKEALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFA  405 (801)
Q Consensus       326 G~~idl~~l~~~~~~~~~~~~i~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~kG~~~l~l~~~~~~~~~i~~~~~~  405 (801)
                      |+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.|+++++.|+
T Consensus       336 Gl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~  415 (832)
T PLN03159        336 GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFA  415 (832)
T ss_pred             hheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhh
Confidence            99999988865445666667778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHcccccccchhhhccccccCCCCCCCceEEEEeccCCChhHHHHHHHHhcCCCCCCCcEEE
Q 003702          406 IMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKDPNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVY  485 (801)
Q Consensus       406 ~~v~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v~~~~~~~~li~Ll~~~~~~~~~~p~~v~  485 (801)
                      +++++++++|.+++|++.++|+|+||+.  .||+|++|+.++++|+|||+|+|+++++++++||+|+++++ +++|++||
T Consensus       416 ~lVl~avl~T~i~~Plv~~ly~p~rk~~--~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t-~~sp~~vy  492 (832)
T PLN03159        416 VMVLVAVAMTALITPVVTVVYRPARRLV--GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT-KRSPICIY  492 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhc--cccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC-CCCCceEE
Confidence            9999999999999999999999999999  99999999999999999999999999999999999999999 89999999


Q ss_pred             EEEeeeccCCchhhHHHhhhccCCCCccCCCCCCccchHHHHHHHHhhc-cceEEEEeEEecCCCChHHHHHHHHHhcCc
Q 003702          486 AMHLMELSERSSAILMVHKARKNGVPFWNKGKRSDCDQVVVAFEAFRQL-SRVFIRPMTAISAMHGMHEDICSSAERKRA  564 (801)
Q Consensus       486 ~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~-~~v~v~~~~~vs~~~~m~~~I~~~A~~~~a  564 (801)
                      ++||+|+++|++|++++|+.+++..+..++ .+.++|+++++|++|+++ ++++++++|++||+++||+|||+.|+|+++
T Consensus       493 ~lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~  571 (832)
T PLN03159        493 VLHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRV  571 (832)
T ss_pred             EEEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCC
Confidence            999999999999999999876544332221 135589999999999976 589999999999999999999999999999


Q ss_pred             cEEEecCccccccCCcccccchhhHHHHHHHhhcCCCceEEEecCCCCCCCccccCCcceEEEEeccCCcChHHHHHHHH
Q 003702          565 AMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQEALAYGA  644 (801)
Q Consensus       565 ~lIil~~h~~~~~~g~~~~~~~~~~~v~~~vl~~apcsVgilvdrg~~~~~~~~~~~~~~~i~v~f~Gg~ddreaL~~a~  644 (801)
                      |+||+||||+|+.||++++.+..+|.+|++||++||||||||||||.++..+.......+||+++|+|||||||||+||+
T Consensus       572 slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~  651 (832)
T PLN03159        572 SLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAW  651 (832)
T ss_pred             CEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHH
Confidence            99999999999999999988999999999999999999999999997643333344567899999999999999999999


Q ss_pred             HHhhCCCeEEEEEEeccCCCCccccc-----------ccCCCCCCcccccHHHHHHHHHhhccCCCceEEEEEEecChhH
Q 003702          645 RMAEHPGISLNVVRFLPSSEISGEIE-----------ADTNDAESTGESADEIFLAEVKQKFKNLEAFKYEERWIKNTSE  713 (801)
Q Consensus       645 rma~~~~v~ltvv~~v~~~~~~~~~~-----------~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e  713 (801)
                      |||+||++++||+||++.++.....+           ....+++++|+++||++++|||.++.++++|.|+||+|+|++|
T Consensus       652 rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e  731 (832)
T PLN03159        652 RMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEE  731 (832)
T ss_pred             HHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHH
Confidence            99999999999999997543221000           0011224568889999999999999888899999999999999


Q ss_pred             HHHHHhcccC-CcEEEEccCC--CchhhcccccCCCCCcccccccccccCCCCcceeEEEEEeccCCCCCCCCCCCcccc
Q 003702          714 TVDVLGEFNK-CHLFLVGRMP--VSRAAAMLKVKSDCPELGPVGSLLISPDFSTSASVLVVQQYVGQTPSSPLLPDKVAV  790 (801)
Q Consensus       714 ~~~~l~~~~~-~DLvivGr~~--~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~~~~~~~~~~~~~~~~~  790 (801)
                      |+.++|++++ |||+||||+|  +|++++||+||+||||||+|||+|||+||.+++||||||||...++ +|   ++.-.
T Consensus       732 ~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~~~~-~~---~~~~~  807 (832)
T PLN03159        732 TVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVGTGP-QP---DDLGT  807 (832)
T ss_pred             HHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeeccCCC-Cc---ccCCC
Confidence            9999999998 9999999998  5999999999999999999999999999999999999999995422 22   33444


Q ss_pred             cCCCCCcC
Q 003702          791 IESPEHDT  798 (801)
Q Consensus       791 ~~~~~~~~  798 (801)
                      ++.|+|+.
T Consensus       808 ~~~~~~~~  815 (832)
T PLN03159        808 PESPAHSP  815 (832)
T ss_pred             CCCCCCch
Confidence            45555543

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>PRK05274 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea	Back alignment and domain information

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>COG3329 Predicted permease [General function prediction only]	Back alignment and domain information

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		801
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 87/630 (13%), Positives = 186/630 (29%), Gaps = 209/630 (33%)

Query: 185 TTDVGRMAMSAAAVNDVAAWILLALAVALSGSGRSPLVSLWVLLCGCG------FVIGCV 238
             D+ +  +S   ++ +     +    A+SG+ R     L+  L          FV   +
Sbjct: 38  VQDMPKSILSKEEIDHI-----IMSKDAVSGTLR-----LFWTLLSKQEEMVQKFVEEVL 87

Query: 239 -----FIVTPI-----------FKWMEKR---CPDGEPVKELYVC-----VTLSIVLLSG 274
                F+++PI             ++E+R     D +   +  V      + L   LL  
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 275 FVTDSIGIHALFGAFITG--VLVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSG-LKTNI 331
               ++ I  + G+   G   +           V     +   +   +++++     +  
Sbjct: 148 RPAKNVLIDGVLGS---GKTWVA--------LDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 332 TTIQGLQSWGFLVLVIVTACFGKIVGTVAMSLACRIPFK-EAL--ALGFLMNTKGLVE-L 387
           T ++ LQ    L+  I          T     +  I  +  ++   L  L+ +K     L
Sbjct: 197 TVLEMLQK---LLYQIDPN------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 388 IVL-NIGKDRKVLNDQTFAIMVLMAVFTTFITTPLVMAVYKPNQKTSKVAYKHRTIKRKD 446
           +VL N+ ++ K  N   F +          +TT                    R  +  D
Sbjct: 248 LVLLNV-QNAKAWN--AFNLSC-----KILLTT--------------------RFKQVTD 279

Query: 447 PNSELRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYA----MHLMELSERSS----- 497
             S           +   T I+L   S      E   +          +L          
Sbjct: 280 FLS-----------AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 498 AILMVHKARKNGVPFWNKGKRSDCDQVVVAFEA-------------FRQLSRVF-----I 539
            + ++ ++ ++G+  W+  K  +CD++    E+             F +LS VF     I
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHI 387

Query: 540 RPMTAIS----------AMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFR 589
            P   +S           M  +++    S   K+     +        +  L+       
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LE--LKVKLENEY 443

Query: 590 WVNKRVLEH-----ASCSVGILVDRGLGGSTHVAASNVSSVITVLFFGGNDDQ---EALA 641
            +++ +++H        S  ++                             DQ     + 
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPP-------------------------YLDQYFYSHIG 478

Query: 642 Y---GARMAEH----PGISLNVVRFLPSSEISGEIEADTNDAESTGESADEIFLAEVKQK 694
           +        E       + L+  RF     +  +I  D+    ++G   + +      Q+
Sbjct: 479 HHLKNIEHPERMTLFRMVFLD-FRF-----LEQKIRHDSTAWNASGSILNTL------QQ 526

Query: 695 FKNLEAFKYEERWIKNT---SETVDVLGEF 721
            K      Y+     N       V+ + +F
Sbjct: 527 LK-----FYKPYICDNDPKYERLVNAILDF 551

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		801
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.48
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.37
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	99.31
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	99.27
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.19
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.04
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.94
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.94
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.84
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.8
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	98.8
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	98.7
d1efpb_		246	Small, beta subunit of electron transfer flavoprot	93.37
d3clsc1		262	Small, beta subunit of electron transfer flavoprot	92.65
d1efvb_		252	Small, beta subunit of electron transfer flavoprot	84.4

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=2.8e-13  Score=100.25  Aligned_cols=147  Identities=14%  Similarity=0.156  Sum_probs=100.0

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCC-CCCC----CCCCCCHHH
Q ss_conf             43889842689936899999973599989983799999421168751467774200289976-6778----888630589
Q 003702          451 LRIFACFHTASNVPTMINLIEASRGTEKKEGLCVYAMHLMELSERSSAILMVHKARKNGVPF-WNKG----KRSDCDQVV  525 (801)
Q Consensus       451 lriLv~i~~~~~~~~~i~ll~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~i~  525 (801)
                      -|||+|+|+++....+++.+..++   +..+.+++++|+++..................... ..+.    .....++..
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la---~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFK---TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTC---CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHH---HHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             829999879989999999999998---75399799998305665443333222245332220078899999999999999


Q ss_pred             HHHHHHH---HCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             9999976---2264489986984379973898999988339559995276566568842344221189999985008995
Q 003702          526 VAFEAFR---QLSRVFIRPMTAISAMHGMHEDICSSAERKRAAMIILPFHKHQRFDGVLETTRSEFRWVNKRVLEHASCS  602 (801)
Q Consensus       526 ~~~~~~~---~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~adlIilp~h~~~~~dg~~~~~~~~~~~vn~~Vl~~ApCs  602 (801)
                      +.++.+.   +..++.++.....+   ++.+.||+.|++.++||||||.|++....+.+      +|++.++|++++|||
T Consensus        81 ~~l~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~GS~a~~vl~~s~~p  151 (160)
T d1mjha_          81 NKMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNKP  151 (160)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEEC---CHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC------CCCHHHHHHHCCCCC
T ss_conf             999999999876597699999945---58987766520242214776168998642141------070999999629998


Q ss_pred             EEEEECC
Q ss_conf             4998359
Q 003702          603 VGILVDR  609 (801)
Q Consensus       603 V~ilvdr  609 (801)
                      |.|+..+
T Consensus       152 VlvV~~~  158 (160)
T d1mjha_         152 VLVVKRK  158 (160)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
T ss_conf             9998289

PyMOL of d1mjha_

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}	Back information, alignment and structure

>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure