Citrus Sinensis ID: 003718

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800

MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELSSSSESNSGSDSDDVNEDAEGAGDKSGRPNKRRKMPQDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKIY

ccccHHHHHHHccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHccccHHHHHHHHHHcccHHHHcccccEEEEEEEEEcccccEEEEEEEccccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEcEEcccccccccEEEEEccHHHHHcccccEEEEEEEEcccccccEEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEcccccHHHHccccccEEccccccccccccccccEEEEEEEccccccccccccEEEEEEcccccccccHHcccccccccEEEEEEEccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

ccccEEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccEEEEcHHHHccccccccHHHHHHHHHHHccccccccccEEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEcccccccccccccccEEEEEcccccccccccEEEEEHHHHHHHHcccccEEEEcccccccccccEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcccccccEEEcccccccHEEEccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccEEccHHHHHHcccccEEEEcccccccccccHccEEEEEEEEEcccccccEEEEEEEEEEcccEEEcEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

MNVNVKREILETClttaepkqndsvsnkLVPFielssssesnsgsdsddvnedaegagdksgrpnkrrkmpqdlevvlpvgfleplpaperlpaaagndkaVSVGLQSCKQFWkagdyegapsggwefstggmdhvrvhpkflhsnatSHKWALGAFAELLDNSldevcngatysnidmlinrkdgsrmlliedngggmnpdkmrhcmslgysakskaantigqygngfktstmrLGADVIVFScccgkdgksptrsiglLSYTFLrstgkedivvpmldyegsQQEWKKIIRSSLDDWNRNVETIvqwspfsseadLLHQFNLMKDHGTRIIIYNLweddqglleldfdsdkhdiqlrgvnrdeQNIKMaqhypnsrhflTYRHSLRSYASILYLrlppgfriiirgkdvehhnivndmmlskkvtyrpqpgasgiptdlhMAVDVTIGFVkdakhhidvqgfnvyhknrlikpfwrlwnasgsdgrgvIGVLEanfvepahdkqgfeRTTVLARLEARLIQMQKDYwnnncheigyaprrykkYIKDSYdreisskksypsrhkitdsshsdkhqlhsnqrwegkdskrlpeasnygdrkghesskgkykmktpvkyregasvseplspsaedasdddMHVMVTARGANGSSQKILAAEKsfgkdglhrthpsaclvdsesqqdgasggssvrpfmpsqskgsevnypehflsdcslganlgQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKIY

MNVNVKREILETclttaepkqndsvsnKLVPFIELSsssesnsgsdsddvnedaegagdksgrpnkrrkmpqDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGkdgksptrsigLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFvepahdkqgferTTVLARLEARLIQMQkdywnnncheigyaprrykKYIKDSYDReisskksypsrhkitdsshsdkhqlhsnqrwegkdskrlpeasnygdrkghesskgkykmktpvkyregasvseplspsaedasddDMHVMVTArgangssqkILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRlekkegelqeereRCRSLEAQLKVMQQTIEELNKEQESLidifaeerdrrereeenlrkkikiy

MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELssssesnsgsdsddvnedAEGAGDKSGRPNKRRKMPQDLEVVLPVGFleplpaperlpaaaGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHelkkrlekkegelqeererCRSLEAQLKVMQQTIEELNKEQESLIDIFAeerdrrereeeNLRKKIKIY

**************************************************************************EVVLPVGFLEP**************KAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIE*************CMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNR**QNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD***********************************************************************************************************************************************************************************************************************************************************

*****KR*ILETC****************************************************************LPVGFLE*************************KQFWKAGDYEGA***************RVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLG***********G**GNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQL********************HFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAP**************************************************************************************************************************************************************************************************************************************************************K*****

MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIEL********************************RKMPQDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSY************************************************************KMKTPVK******************SDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLV*****************FMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKK**********CRSLEAQLKVMQQTIEELNKEQESLIDIFAEER************KIKIY

*NVNVKREILETCLTTA******SVSNKLVP***************************************************************************QSCKQFW*******APSGGW*FSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVN**********HYP*SRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAP**************************************HSNQ*********************************************************************************************************************************HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK***IY

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELSSSSESNSGSDSDDVNEDAEGAGDKSGRPNKRRKMPQDLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKDSYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIKIY

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		800	2.2.26 [Sep-21-2011]
Q8BMD7		928	MORC family CW-type zinc	no	no	0.473	0.408	0.334	2e-52
Q14149		939	MORC family CW-type zinc	yes	no	0.441	0.375	0.349	5e-52
Q8TE76		937	MORC family CW-type zinc	no	no	0.465	0.397	0.329	1e-50
Q9WVL5		950	MORC family CW-type zinc	no	no	0.463	0.390	0.257	7e-34
Q9Y6X9		1032	MORC family CW-type zinc	no	no	0.32	0.248	0.323	8e-34
Q86VD1		984	MORC family CW-type zinc	no	no	0.466	0.379	0.276	2e-33
Q69ZX6		1030	MORC family CW-type zinc	no	no	0.307	0.238	0.330	5e-33
Q8C5W4		1022	MORC family CW-type zinc	no	no	0.321	0.251	0.311	8e-33

>sp\|Q8BMD7\|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2	Back alignment and function desciption

 Score =  207 bits (528), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/419 (33%), Positives = 220/419 (52%), Gaps = 40/419 (9%)

Query: 138 VHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGG 197
           + P++L SN++SH     A AELLDN++D   +  T   ID+   +K     L   D+G 
Sbjct: 35  MSPRYLQSNSSSHTRPFSAIAELLDNAVDPDVSARTVF-IDVEEVKKKPC--LTFTDDGC 91

Query: 198 GMNPDKMRHCMSLGYSAK--SKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPT 255
           GM P K+   +S G++ K   K+   IG +GNGFK+ +MRLG D +VF+    K+G   T
Sbjct: 92  GMTPHKLHRMLSFGFTDKVIKKSQRPIGVFGNGFKSGSMRLGKDALVFT----KNGN--T 145

Query: 256 RSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSE 315
            ++GLLS T+L     + ++VP++ +  SQQ  K I+    +D   ++E I+ +S F+ E
Sbjct: 146 LAVGLLSQTYLECIQAQAVIVPIVPF--SQQNKKMIV---TEDSLPSLEAILNYSIFNCE 200

Query: 316 ADLLHQFNLMK-DHGTRIIIYNLWEDDQGLLELDFDSDKHDIQLRGVNRDEQNIK-MAQH 373
            DLL QF+ +    GTR++I+N+  +  G  ELDFD+D++DI +   + +E+ I  +   
Sbjct: 201 KDLLSQFDAIPGKKGTRVLIWNIRRNKDGKSELDFDTDQYDILVSDFDAEEKEIGGVTSE 260

Query: 374 YPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPG 433
            P + +      SLR++ SILY++  P  +I +R K V    I   +   +   Y+P   
Sbjct: 261 LPETEY------SLRAFCSILYMK--PRMKIFLRQKKVTTQMIAKSLANVEYDIYKP--- 309

Query: 434 ASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRL---WNASGSDGRGV 490
                T  +  V +T GF    K+H    G  +YH NRLIK F +       +  +G GV
Sbjct: 310 -----TSTNKQVRITFGF--SCKYHNQF-GVMMYHNNRLIKAFEKAGCQLKPTCGEGVGV 361

Query: 491 IGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD 549
           IGV+E NF++PA++KQ FE T         L +    YW     +  + P    + I D
Sbjct: 362 IGVIECNFLKPAYNKQDFEYTKEYRLTINALARKLNAYWKEKISQENFEPLPTSRRIPD 420

Mus musculus (taxid: 10090)

>sp\|Q14149\|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3	Back alignment and function description

>sp\|Q8TE76\|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2	Back alignment and function description

>sp\|Q9WVL5\|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y6X9\|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2	Back alignment and function description

>sp\|Q86VD1\|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2	Back alignment and function description

>sp\|Q69ZX6\|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2	Back alignment and function description

>sp\|Q8C5W4\|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
255540135		816	zinc finger protein, putative [Ricinus c	0.956	0.937	0.652	0.0
297734460		830	unnamed protein product [Vitis vinifera]	0.952	0.918	0.615	0.0
224119746		862	predicted protein [Populus trichocarpa]	0.898	0.834	0.647	0.0
356527801		820	PREDICTED: uncharacterized protein LOC10	0.946	0.923	0.597	0.0
359491569		2234	PREDICTED: uncharacterized protein LOC10	0.797	0.285	0.664	0.0
449440961		824	PREDICTED: uncharacterized protein LOC10	0.961	0.933	0.606	0.0
9757986		823	unnamed protein product [Arabidopsis tha	0.936	0.910	0.543	0.0
240256429		819	Histidine kinase-, DNA gyrase B-, and HS	0.94	0.918	0.542	0.0
449501464		794	PREDICTED: uncharacterized LOC101222073	0.701	0.706	0.696	0.0
356511518		809	PREDICTED: uncharacterized protein LOC10	0.727	0.719	0.671	0.0

>gi\|255540135\|ref\|XP_002511132.1\| zinc finger protein, putative [Ricinus communis] gi\|223550247\|gb\|EEF51734.1\| zinc finger protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/821 (65%), Positives = 600/821 (73%), Gaps = 56/821 (6%)

Query: 1   MNVNVKREILETCLTTAEPKQNDSVSNKLVPFIELSSSSESNSGSDSDDVNEDAEGA--- 57
           M++ VKREI+ET  T    + NDSV       IELSSSS S+S S SD  +E   GA   
Sbjct: 1   MDIPVKREIVETFGTADSNRGNDSVLPGPPVLIELSSSSSSSSSSSSDSDSESDNGARFF 60

Query: 58  GDKSGRPNKRRKMPQDLEVVLPVGFLEPL---PAPERLPAAAGNDKAVSVGLQSCKQFWK 114
            +  G   K+RK+ ++L VVLPVGFL PL   PA   L    GND    +  QSCKQFWK
Sbjct: 61  PNGEGISKKKRKL-EELGVVLPVGFLAPLNQVPAEAMLTTVQGNDNVCLID-QSCKQFWK 118

Query: 115 AGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATY 174
           AGDYEGAP G W+ STGGMDHVRVHPKFLHSNATSHKWALGAFAELLDN+LDEVC GATY
Sbjct: 119 AGDYEGAPCGDWDLSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEVCYGATY 178

Query: 175 SNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTM 234
            NIDML N KDGSRMLLIEDNGGGM+PDKMR CMSLGYSAKSK ANTIGQYGNGFKTSTM
Sbjct: 179 VNIDMLANWKDGSRMLLIEDNGGGMDPDKMRQCMSLGYSAKSKVANTIGQYGNGFKTSTM 238

Query: 235 RLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEWKKIIRS 294
           RLGADVIVFS C GKDGKSPT+SIGLLSYTFLRSTGKEDIVVPMLDYE   QEW K+IRS
Sbjct: 239 RLGADVIVFSRCPGKDGKSPTQSIGLLSYTFLRSTGKEDIVVPMLDYERKGQEWNKMIRS 298

Query: 295 SLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELDFDSDKH 354
           S  DWNRNVETIVQWSPFSSEADLL QFNLM DHGTRI+IYNLWEDD+G LELDFD+D H
Sbjct: 299 SSGDWNRNVETIVQWSPFSSEADLLRQFNLMSDHGTRIVIYNLWEDDEGSLELDFDTDPH 358

Query: 355 DIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHH 414
           DIQLRGVNRDE+NI+MA+ +PNSRHFLTYRHSLRSYASILYLRLPP FRII+RGKDVEHH
Sbjct: 359 DIQLRGVNRDEKNIQMAKEFPNSRHFLTYRHSLRSYASILYLRLPPCFRIILRGKDVEHH 418

Query: 415 NIVNDMMLSKKVTYRPQPGASGIPTDL---HMAVDVTIGFVKDAKHHIDVQGFNVYHKNR 471
           NIVNDMMLS+++TYRPQ  A G+  D    HMA  VTIGFVKDAKHHIDVQGFNVYHKNR
Sbjct: 419 NIVNDMMLSQEITYRPQ-SADGVAKDFNLNHMAAIVTIGFVKDAKHHIDVQGFNVYHKNR 477

Query: 472 LIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNN 531
           LIKPFWRLWNA+GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARL+QMQK YW+ 
Sbjct: 478 LIKPFWRLWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLVQMQKTYWST 537

Query: 532 NCHEIGYAPRRYKKYIKDSYD-------REISSK-KSYPSRHKITDSSHSDKHQLHSNQR 583
           NCH+IGYAPRR K++I +S D        ++SS+ K Y +      SS SDK   H+NQ 
Sbjct: 538 NCHKIGYAPRRNKRFINESTDGGSSPDYSQVSSQSKKYSALRGKGLSSLSDKFYSHANQN 597

Query: 584 WEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHV 643
             GK S    +  N     GH SS G    KT            P SPS  D  D+D H+
Sbjct: 598 -GGKRSDTFAKNGNPAYANGHVSSNGSDGTKTSTGSGRKTHSKAPSSPSLHDVDDNDAHI 656

Query: 644 MVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQSK 703
            +  R                 +DGLH    S+ L D+  Q               SQSK
Sbjct: 657 ALPTR-----------------QDGLHMVRLSSPLEDTTQQ-----------AVTRSQSK 688

Query: 704 GSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEER------ERCRSLEAQ 757
             +V+  +H L +  L  N+ +LKQEN EL++RL+K+E E Q E        +C+SLE Q
Sbjct: 689 AGKVDNSQHVLPESDL-CNINELKQENQELRERLKKREAEFQGEMMHGSMCNKCKSLEIQ 747

Query: 758 LKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798
           L+  QQ IEELNKEQESLIDIF+EERDRR++EEENLRKK K
Sbjct: 748 LQEAQQKIEELNKEQESLIDIFSEERDRRDKEEENLRKKYK 788

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297734460\|emb\|CBI15707.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224119746\|ref\|XP_002318152.1\| predicted protein [Populus trichocarpa] gi\|222858825\|gb\|EEE96372.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356527801\|ref\|XP_003532495.1\| PREDICTED: uncharacterized protein LOC100816702 [Glycine max]	Back alignment and taxonomy information

>gi\|359491569\|ref\|XP_002280533.2\| PREDICTED: uncharacterized protein LOC100266246 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449440961\|ref\|XP_004138252.1\| PREDICTED: uncharacterized protein LOC101222073 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|9757986\|dbj\|BAA96991.2\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|240256429\|ref\|NP_199891.4\| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana] gi\|332008608\|gb\|AED95991.1\| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449501464\|ref\|XP_004161374.1\| PREDICTED: uncharacterized LOC101222073 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356511518\|ref\|XP_003524472.1\| PREDICTED: uncharacterized protein LOC100786679 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		800
TAIR\|locus:2117358		707	AT4G24970 [Arabidopsis thalian	0.605	0.684	0.746	7.6e-209
TAIR\|locus:2163320		819	AT5G50780 [Arabidopsis thalian	0.567	0.554	0.742	5e-203
TAIR\|locus:2179837		708	AT5G13130 [Arabidopsis thalian	0.547	0.618	0.644	9.5e-163
TAIR\|locus:2122264		635	CRT1 "compromised recognition	0.526	0.662	0.517	4.7e-116
TAIR\|locus:2122254		626	CRH1 "CRT1 Homologue 1" [Arabi	0.525	0.670	0.511	3.2e-113
TAIR\|locus:2011226		663	DMS11 "DEFECTIVE IN MERISTEM S	0.516	0.622	0.516	5.5e-109
TAIR\|locus:2122244		486	AT4G36270 "AT4G36270" [Arabido	0.402	0.662	0.446	7.2e-68
ZFIN\|ZDB-GENE-030131-1502		1079	morc3a "MORC family CW-type zi	0.465	0.344	0.353	1.9e-53
ZFIN\|ZDB-GENE-060929-544		422	zgc:152774 "zgc:152774" [Danio	0.488	0.926	0.334	6.5e-51
ZFIN\|ZDB-GENE-040801-98		763	morc3b "MORC family CW-type zi	0.282	0.296	0.361	9e-43

TAIR\|locus:2117358 AT4G24970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1955 (693.3 bits), Expect = 7.6e-209, Sum P(2) = 7.6e-209
 Identities = 368/493 (74%), Positives = 415/493 (84%)

Query:   109 CKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEV 168
             CKQFWKAGDYEGA    W+ S+GG DHVRVHPKFLHSNATSHKWALGAFAELLDN+LDEV
Sbjct:   135 CKQFWKAGDYEGAAGDNWDLSSGGFDHVRVHPKFLHSNATSHKWALGAFAELLDNALDEV 194

Query:   169 CNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228
              +GATY  +DML N K G+RMLLIEDNGGGM+P+KMR CMSLGYSAKSK ANTIGQYGNG
Sbjct:   195 ASGATYVKVDMLENNKGGNRMLLIEDNGGGMDPEKMRQCMSLGYSAKSKLANTIGQYGNG 254

Query:   229 FKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPMLDYEGSQQEW 288
             FKTSTMRLGADVIVFS C GKDGKS T+SIGLLSYTFLRSTGKEDIVVPMLDYE    EW
Sbjct:   255 FKTSTMRLGADVIVFSRCPGKDGKSSTQSIGLLSYTFLRSTGKEDIVVPMLDYERRDPEW 314

Query:   289 KKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLMKDHGTRIIIYNLWEDDQGLLELD 348
              KIIRSS  DW++NVETI+QWSPFSSE DLLHQF+LMKD GTRIIIYNLWEDDQG+LELD
Sbjct:   315 SKIIRSSTRDWDKNVETIIQWSPFSSEEDLLHQFDLMKDRGTRIIIYNLWEDDQGMLELD 374

Query:   349 FDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRG 408
             FD+D +DIQLRGVNR+E+NIKMA  +PNSRHFLTY+HSLRSY SILYLR+PPGFRII+RG
Sbjct:   375 FDADPYDIQLRGVNREERNIKMASQFPNSRHFLTYKHSLRSYVSILYLRIPPGFRIILRG 434

Query:   409 KDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVYH 468
              DVEHH++VNDMM ++++TYRPQ  + G+ T+  M+  V IGFVKDAKHH+DVQGFNVYH
Sbjct:   435 IDVEHHSVVNDMMQTEQITYRPQSESYGVVTN--MSAIVIIGFVKDAKHHVDVQGFNVYH 492

Query:   469 KNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDY 528
             KNRLIKPFWR+WNA+GSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLE+RL+QMQK Y
Sbjct:   493 KNRLIKPFWRIWNATGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLESRLVQMQKTY 552

Query:   529 WNNNCHEIGYAPRRYKK--YIKDSYDREISSKKSYPSRHKI----TDSSHSDKHQLHSNQ 582
             W+ NCH+IGYAPRR +K  Y  D+ D    + +  PS  K     +D  +S  +  H+  
Sbjct:   553 WSTNCHKIGYAPRRREKSAYGYDNRDSSPENDREGPSSIKTPTPASDKFYSSSYPNHNGD 612

Query:   583 RW-EGKDSKRLPE 594
                 GKD  RL E
Sbjct:   613 NGVSGKDGARLQE 625

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR\|locus:2163320 AT5G50780 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2179837 AT5G13130 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2122264 CRT1 "compromised recognition of TCV 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2122254 CRH1 "CRT1 Homologue 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2011226 DMS11 "DEFECTIVE IN MERISTEM SILENCING 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2122244 AT4G36270 "AT4G36270" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060929-544 zgc:152774 "zgc:152774" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		800
pfam13589		134	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr	6e-17
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
pfam02518		111	pfam02518, HATPase_c, Histidine kinase-, DNA gyras	5e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
COG4026		290	COG4026, COG4026, Uncharacterized protein containi	7e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
pfam05103		131	pfam05103, DivIVA, DivIVA protein	1e-04
pfam11559		149	pfam11559, ADIP, Afadin- and alpha -actinin-Bindin	1e-04
COG4026		290	COG4026, COG4026, Uncharacterized protein containi	3e-04
COG3290		537	COG3290, CitA, Signal transduction histidine kinas	3e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
COG0323		638	COG0323, MutL, DNA mismatch repair enzyme (predict	5e-04
pfam13514		1118	pfam13514, AAA_27, AAA domain	5e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-04
COG2433		652	COG2433, COG2433, Uncharacterized conserved protei	7e-04
pfam00769		244	pfam00769, ERM, Ezrin/radixin/moesin family	8e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-04
smart00935		140	smart00935, OmpH, Outer membrane protein (OmpH-lik	9e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
pfam07888		546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.001
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.001
pfam09726		680	pfam09726, Macoilin, Transmembrane protein	0.001
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.002
pfam00038		312	pfam00038, Filament, Intermediate filament protein	0.002
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004

>gnl\|CDD\|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

 Score = 77.7 bits (192), Expect = 6e-17
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 13/128 (10%)

Query: 155 GAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSA 214
            A AEL+DNS+D     A  +N+ + I+   G   + IEDNGGGM+ +++R+ + LG S+
Sbjct: 5   DAIAELIDNSID-----ADATNVKISIDPDRGEDGISIEDNGGGMSYEELRNALKLGRSS 59

Query: 215 KSKA--ANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKE 272
           K     + T+G+ G G K +++ LG  + V S    K+G+S T ++       +   G+ 
Sbjct: 60  KEGERDSTTLGRKGIGMKLASLSLGRKLTVTS---KKEGESSTLTL---DLDDIDKEGEW 113

Query: 273 DIVVPMLD 280
           D+      
Sbjct: 114 DLPELTSA 121

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|218434 pfam05103, DivIVA, DivIVA protein	Back alignment and domain information

>gnl\|CDD\|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding	Back alignment and domain information

>gnl\|CDD\|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|216108 pfam00769, ERM, Ezrin/radixin/moesin family	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|214922 smart00935, OmpH, Outer membrane protein (OmpH-like)	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

>gnl\|CDD\|220365 pfam09726, Macoilin, Transmembrane protein	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|200948 pfam00038, Filament, Intermediate filament protein	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		800
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	100.0
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	99.91
PRK05218		613	heat shock protein 90; Provisional	99.76
COG0326		623	HtpG Molecular chaperone, HSP90 family [Posttransl	99.7
PF13589		137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	99.69
PRK14083		601	HSP90 family protein; Provisional	99.65
PTZ00130		814	heat shock protein 90; Provisional	99.57
PTZ00272		701	heat shock protein 83 kDa (Hsp83); Provisional	99.52
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	99.35
KOG0019		656	consensus Molecular chaperone (HSP90 family) [Post	99.33
KOG0020		785	consensus Endoplasmic reticulum glucose-regulated	99.27
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	99.23
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	99.01
KOG1979		694	consensus DNA mismatch repair protein - MLH1 famil	98.74
COG1389		538	DNA topoisomerase VI, subunit B [DNA replication,	98.74
PRK05559		631	DNA topoisomerase IV subunit B; Reviewed	98.45
TIGR01052		488	top6b DNA topoisomerase VI, B subunit. This model	98.32
PRK04184		535	DNA topoisomerase VI subunit B; Validated	98.27
TIGR01055		625	parE_Gneg DNA topoisomerase IV, B subunit, proteob	98.22
PF02518		111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	98.22
PRK14868		795	DNA topoisomerase VI subunit B; Provisional	98.2
KOG1978		672	consensus DNA mismatch repair protein - MLH2/PMS1/	98.18
PRK05644		638	gyrB DNA gyrase subunit B; Validated	98.15
PRK14939		756	gyrB DNA gyrase subunit B; Provisional	98.01
TIGR01059		654	gyrB DNA gyrase, B subunit. This model describes t	97.98
PRK14867		659	DNA topoisomerase VI subunit B; Provisional	97.93
smart00433		594	TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras	97.86
cd00075		103	HATPase_c Histidine kinase-like ATPases; This fami	97.47
COG3290		537	CitA Signal transduction histidine kinase regulati	97.45
KOG1977		1142	consensus DNA mismatch repair protein - MLH3 famil	97.43
smart00387		111	HATPase_c Histidine kinase-like ATPases. Histidine	97.4
PRK10604		433	sensor protein RstB; Provisional	97.24
PRK09470		461	cpxA two-component sensor protein; Provisional	97.14
TIGR01386		457	cztS_silS_copS heavy metal sensor kinase. Members	97.07
PRK10364		457	sensor protein ZraS; Provisional	97.03
PRK11006		430	phoR phosphate regulon sensor protein; Provisional	97.02
COG0187		635	GyrB Type IIA topoisomerase (DNA gyrase/topo II, t	97.01
COG0642		336	BaeS Signal transduction histidine kinase [Signal	97.0
TIGR01058		637	parE_Gpos DNA topoisomerase IV, B subunit, Gram-po	97.0
PRK09303		380	adaptive-response sensory kinase; Validated	96.95
PRK10549		466	signal transduction histidine-protein kinase BaeS;	96.93
TIGR02966		333	phoR_proteo phosphate regulon sensor kinase PhoR.	96.83
PRK11100		475	sensory histidine kinase CreC; Provisional	96.79
PRK09467		435	envZ osmolarity sensor protein; Provisional	96.75
PRK10755		356	sensor protein BasS/PmrB; Provisional	96.75
PRK15053		545	dpiB sensor histidine kinase DpiB; Provisional	96.62
TIGR02938		494	nifL_nitrog nitrogen fixation negative regulator N	96.59
PRK11086		542	sensory histidine kinase DcuS; Provisional	96.54
TIGR02916		679	PEP_his_kin putative PEP-CTERM system histidine ki	96.43
PRK11360		607	sensory histidine kinase AtoS; Provisional	96.43
PTZ00109		903	DNA gyrase subunit b; Provisional	96.31
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	96.26
PRK09835		482	sensor kinase CusS; Provisional	96.21
PRK10815		485	sensor protein PhoQ; Provisional	96.14
PLN03128		1135	DNA topoisomerase 2; Provisional	96.11
PRK13837		828	two-component VirA-like sensor kinase; Provisional	96.1
PTZ00108		1388	DNA topoisomerase 2-like protein; Provisional	96.1
PRK11073		348	glnL nitrogen regulation protein NR(II); Provision	96.05
PLN03237		1465	DNA topoisomerase 2; Provisional	96.05
PHA02569		602	39 DNA topoisomerase II large subunit; Provisional	95.89
PRK10547		670	chemotaxis protein CheA; Provisional	95.85
PRK10337		449	sensor protein QseC; Provisional	95.84
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	95.78
PRK15347		921	two component system sensor kinase SsrA; Provision	95.69
PRK11091		779	aerobic respiration control sensor protein ArcB; P	95.52
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	95.44
TIGR01925		137	spIIAB anti-sigma F factor. This model describes t	95.18
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	95.07
COG4191		603	Signal transduction histidine kinase regulating C4	95.07
PRK10490		895	sensor protein KdpD; Provisional	95.03
PRK10618		894	phosphotransfer intermediate protein in two-compon	94.88
PRK04069		161	serine-protein kinase RsbW; Provisional	94.82
TIGR01924		159	rsbW_low_gc serine-protein kinase RsbW. This model	94.77
KOG3850		455	consensus Predicted membrane protein [Function unk	94.72
PRK10841		924	hybrid sensory kinase in two-component regulatory	94.63
PF13581		125	HATPase_c_2: Histidine kinase-like ATPase domain	94.35
PRK13557		540	histidine kinase; Provisional	94.34
PRK09959		1197	hybrid sensory histidine kinase in two-component r	94.19
PRK03660		146	anti-sigma F factor; Provisional	93.67
PRK10600		569	nitrate/nitrite sensor protein NarX; Provisional	93.45
KOG0787		414	consensus Dehydrogenase kinase [Signal transductio	92.62
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.42
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.31
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.12
COG2972		456	Predicted signal transduction protein with a C-ter	92.11
PF10267		395	Tmemb_cc2: Predicted transmembrane and coiled-coil	91.68
COG4192		673	Signal transduction histidine kinase regulating ph	91.37
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	91.34
PRK11644		495	sensory histidine kinase UhpB; Provisional	90.95
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	90.8
PRK13560		807	hypothetical protein; Provisional	90.74
COG4585		365	Signal transduction histidine kinase [Signal trans	90.59
COG0643		716	CheA Chemotaxis protein histidine kinase and relat	88.5
COG5000		712	NtrY Signal transduction histidine kinase involved	87.99
PRK10884		206	SH3 domain-containing protein; Provisional	87.84
COG4026		290	Uncharacterized protein containing TOPRIM domain,	87.37
COG3850		574	NarQ Signal transduction histidine kinase, nitrate	87.21
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	86.76
COG3920		221	Signal transduction histidine kinase [Signal trans	86.22
KOG1962		216	consensus B-cell receptor-associated protein and r	85.41
PF03962		188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	84.91
KOG1962		216	consensus B-cell receptor-associated protein and r	83.98
COG2172		146	RsbW Anti-sigma regulatory factor (Ser/Thr protein	83.94
PRK10935		565	nitrate/nitrite sensor protein NarQ; Provisional	83.66
PF06705		247	SF-assemblin: SF-assemblin/beta giardin	83.35
PRK13559		361	hypothetical protein; Provisional	82.79
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	81.77
KOG0971		1243	consensus Microtubule-associated protein dynactin	81.64
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.14
PF07334		76	IFP_35_N: Interferon-induced 35 kDa protein (IFP 3	80.63
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	80.3

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=1.4e-68  Score=614.18  Aligned_cols=617  Identities=41%  Similarity=0.603  Sum_probs=470.4

Q ss_pred             cccccccchhhhhhcccCCCCCCCCCccccCCCccccccCchhhhccccccccHHHHHHHHhhcchhhhhcCCceeEEEE
Q 003718          100 KAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDM  179 (800)
Q Consensus       100 ~~~~~~~~~~~~fwkag~y~~~~~~~~~~~~~~l~~~~vhp~fLhSnstsHkwpF~AIAELIDNAiDA~~~gAt~V~Idi  179 (800)
                      .++++.+..|+||||||+|..++.....+..++.+|+++||+|||+|+|+|+|.++|++||||||+|.+.++|+.+.|+.
T Consensus        94 ~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~  173 (775)
T KOG1845|consen   94 FAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDY  173 (775)
T ss_pred             cccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeee
Confidence            46688889999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEccCCC-ceeEEEE-----ECCCCCCHHhHHHhhhcCccccccCCcccCcccccccccccccCCeEEEEeeecCCCCCC
Q 003718          180 LINRKDG-SRMLLIE-----DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKS  253 (800)
Q Consensus       180 ~~~~~~g-~~~L~I~-----DNG~GM~~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsAsmrLG~~V~V~SK~~g~dg~~  253 (800)
                      +....+. .+.++|+     |||+||.++-+..||.+|+++|..-...+|+||+||+++.|++|.+++|++|..+..|..
T Consensus       174 I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~k  253 (775)
T KOG1845|consen  174 INPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLK  253 (775)
T ss_pred             ecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCC
Confidence            7654444 6777777     679999999999999999999986678999999999999999999999999988778889


Q ss_pred             CeEEeeecceeeeccCCCCceEecc----cccccchhhhHHHhhcchhhhhhhHHH-----hhhcCCCCCHHHHHHH---
Q 003718          254 PTRSIGLLSYTFLRSTGKEDIVVPM----LDYEGSQQEWKKIIRSSLDDWNRNVET-----IVQWSPFSSEADLLHQ---  321 (800)
Q Consensus       254 ~t~SvglLS~tfL~~~g~ddIiVPm----~~we~~~~~~~~~i~~~~~dw~~nL~i-----IlkySPF~te~eLl~Q---  321 (800)
                      .++++|+|||+||+.++.+|++|||    .+++...+.|..++..+..+|..|+.+     +++|+||.++.+++.|   
T Consensus       254 stqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v  333 (775)
T KOG1845|consen  254 STQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSV  333 (775)
T ss_pred             cceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhh
Confidence            9999999999999999999999999    888887788888888888999999998     9999999999999999   


Q ss_pred             ------------HhhccCCceEEEEEcc--cccCCCceeccCCCCccceecccCcchhhhhhhhccCCCCcchhhhhhhH
Q 003718          322 ------------FNLMKDHGTRIIIYNL--WEDDQGLLELDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSL  387 (800)
Q Consensus       322 ------------fd~Ig~~GTrIII~NL--~~~~~G~~ELDFdtD~~DI~i~~~~~d~k~~q~a~~~p~~~h~~~~r~SL  387 (800)
                                  |+.+..+||.||+||+  |..+.|.+|+||+.++++|..                       .+.+++
T Consensus       334 ~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-----------------------~~~~~~  390 (775)
T KOG1845|consen  334 QYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-----------------------TYCHSH  390 (775)
T ss_pred             hhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc-----------------------cchhhh
Confidence                        8888999999999999  999999999999999999862                       234788


Q ss_pred             HHHHHhhhccCCCceEEEEcCeeecccccccccccccceeccccCCCCCCCCcccceEEEEEeeeccCcccccccceEEE
Q 003718          388 RSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDLHMAVDVTIGFVKDAKHHIDVQGFNVY  467 (800)
Q Consensus       388 RaYLSILYLr~pprfkIiLrGkkVe~~ni~~dL~~~e~v~YrPq~~~~~lP~~~n~~v~itIGf~k~a~~~~~~qGf~VY  467 (800)
                      +.|.+|||+..+++|+++++|+.+.|+.+..+++..+.+.|+|+......+ ...+......||.+.+++++++++++||
T Consensus       391 ~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~nV~  469 (775)
T KOG1845|consen  391 LSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGK-QRLIKLSPKPGFVKDAPRPIDVQQFNVS  469 (775)
T ss_pred             hhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCcc-chhhcccCCCCcccccCCCCCccCCccc
Confidence            999999999999999999999999999999999999989999985432211 1123445678999999999999999999


Q ss_pred             ecCccch----hhhhhccCCCCCCcceeeeeeccccCCCCcccchhhhHHHHHHHHHHHHHHHHHhhhhccccccccCCc
Q 003718          468 HKNRLIK----PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKDYWNNNCHEIGYAPRRY  543 (800)
Q Consensus       468 hkNRLIk----~yerVg~~~~s~GrGVIGVlEanfLePtHnKQDFe~t~ly~rLe~~L~q~l~~YW~~~~~~iGy~~~~~  543 (800)
                      |++|||+    |||+.++..++.++++++++.+||.+|+|++|||+.+...++++.++.++++.||...|++|+|.....
T Consensus       470 ~~~~lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~  549 (775)
T KOG1845|consen  470 HGPRLIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQL  549 (775)
T ss_pred             cCCcchhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhh
Confidence            9999999    999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             cccccc--ccccccCCCCCCCCCcccCCCCCCCcccccccccccccCCCCCCccccCCCCCCcccCcccccccCCccccC
Q 003718          544 KKYIKD--SYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPEASNYGDRKGHESSKGKYKMKTPVKYRE  621 (800)
Q Consensus       544 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (800)
                      .+..+.  .+.+|..|  +..     ..+ ....-|+             .         .+.........++.  +.  
T Consensus       550 ~~~~~~~~~~~Ke~~~--~~~-----~~~-~~~~~~~-------------~---------~~~~~~~~~~~~~~--~~--  595 (775)
T KOG1845|consen  550 QKERESTTTVVKEEKP--ENN-----HLS-SSKRTQR-------------R---------KSTGRAISVAVEKF--NL--  595 (775)
T ss_pred             hhhhcccceeeccccc--ccc-----hhc-chhcccc-------------c---------cccccccccchhhh--cc--
Confidence            655533  22223322  321     000 0000000             0         00000000000111  00  


Q ss_pred             CccccCCCCCCCCCCCcccccccccccCCCCCcccccccccccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 003718          622 GASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHPSACLVDSESQQDGASGGSSVRPFMPSQ  701 (800)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (800)
                       ++...|.+        +..+|+.-.   .+....+..-.+..+. ..++.--.+..-+ ..|.||+.---++..   .+
T Consensus       596 -~~~~~~~~--------~~~~v~sq~---~~~~~e~e~~k~~~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~e~~---~~  658 (775)
T KOG1845|consen  596 -RSGPNGRG--------QIDMVESQE---TPLLKEVERLKKKRRR-AALALEVQSSKNE-EEQSDDDEDSLNEVR---RK  658 (775)
T ss_pred             -ccccCCcC--------Ccccccccc---chhhhHHHHhhhhhhh-hhhhhhhccccch-hhhhccchhhhhHHh---hh
Confidence             01111111        000100000   0000000000000000 0000000011111 125555554222111   11


Q ss_pred             CCCcccCCCCCcccccccchhhhhhhhhchHHHHHHHHhHHh-------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003718          702 SKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEGE-------LQEERERCRSLEAQLKVMQQTIEELNKEQES  774 (800)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~~k~l~~~~~~~~~~l~~~~k~~~~  774 (800)
                      +-.-..+.     ..   .+.|-+|++.+.+.-+++.....-       +.++++..+.|+.++++...+|..+.+.|.+
T Consensus       659 ~~~~~~~~-----~~---~~~~~~l~~~~~~~l~~~~~~~~t~~~q~~~~n~~~~~~~~~~~~~k~~~n~l~~~~~~~~s  730 (775)
T KOG1845|consen  659 SAKLKSEQ-----KQ---KKTLVELEETRKKWLRSMLNQSLTAGEQLKSLNQQEDFDKTLEVELKESRNKLQNLRNKLQS  730 (775)
T ss_pred             ccccchhh-----cc---cHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHh
Confidence            10000111     11   234777777777777766554332       4555688999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHhhhhcc
Q 003718          775 LIDIFAEERDRREREEENLRKKIKI  799 (800)
Q Consensus       775 li~~f~eer~~~~~e~~~l~~kl~~  799 (800)
                      +.+.|..||.+|+.||..+|.||.|
T Consensus       731 ~~~~~~~~~~~~~~e~~l~~~k~~~  755 (775)
T KOG1845|consen  731 LADMFIQERADRDKEEDLQRFKLPV  755 (775)
T ss_pred             cchhhhhHHHhhhhhhhhhhhcccc
Confidence            9999999999999999999999976

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK05218 heat shock protein 90; Provisional	Back alignment and domain information

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B	Back alignment and domain information

>PRK14083 HSP90 family protein; Provisional	Back alignment and domain information

>PTZ00130 heat shock protein 90; Provisional	Back alignment and domain information

>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]	Back alignment and domain information

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05559 DNA topoisomerase IV subunit B; Reviewed	Back alignment and domain information

>TIGR01052 top6b DNA topoisomerase VI, B subunit	Back alignment and domain information

>PRK04184 DNA topoisomerase VI subunit B; Validated	Back alignment and domain information

>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial	Back alignment and domain information

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>PRK14868 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]	Back alignment and domain information

>PRK05644 gyrB DNA gyrase subunit B; Validated	Back alignment and domain information

>PRK14939 gyrB DNA gyrase subunit B; Provisional	Back alignment and domain information

>TIGR01059 gyrB DNA gyrase, B subunit	Back alignment and domain information

>PRK14867 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>smart00433 TOP2c TopoisomeraseII	Back alignment and domain information

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]	Back alignment and domain information

>smart00387 HATPase_c Histidine kinase-like ATPases	Back alignment and domain information

>PRK10604 sensor protein RstB; Provisional	Back alignment and domain information

>PRK09470 cpxA two-component sensor protein; Provisional	Back alignment and domain information

>TIGR01386 cztS_silS_copS heavy metal sensor kinase	Back alignment and domain information

>PRK10364 sensor protein ZraS; Provisional	Back alignment and domain information

>PRK11006 phoR phosphate regulon sensor protein; Provisional	Back alignment and domain information

>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive	Back alignment and domain information

>PRK09303 adaptive-response sensory kinase; Validated	Back alignment and domain information

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR	Back alignment and domain information

>PRK11100 sensory histidine kinase CreC; Provisional	Back alignment and domain information

>PRK09467 envZ osmolarity sensor protein; Provisional	Back alignment and domain information

>PRK10755 sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>PRK15053 dpiB sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL	Back alignment and domain information

>PRK11086 sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase	Back alignment and domain information

>PRK11360 sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>PTZ00109 DNA gyrase subunit b; Provisional	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>PRK09835 sensor kinase CusS; Provisional	Back alignment and domain information

>PRK10815 sensor protein PhoQ; Provisional	Back alignment and domain information

>PLN03128 DNA topoisomerase 2; Provisional	Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>PTZ00108 DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>PLN03237 DNA topoisomerase 2; Provisional	Back alignment and domain information

>PHA02569 39 DNA topoisomerase II large subunit; Provisional	Back alignment and domain information

>PRK10547 chemotaxis protein CheA; Provisional	Back alignment and domain information

>PRK10337 sensor protein QseC; Provisional	Back alignment and domain information

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>TIGR01925 spIIAB anti-sigma F factor	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>PRK04069 serine-protein kinase RsbW; Provisional	Back alignment and domain information

>TIGR01924 rsbW_low_gc serine-protein kinase RsbW	Back alignment and domain information

>KOG3850 consensus Predicted membrane protein [Function unknown]	Back alignment and domain information

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>PRK03660 anti-sigma F factor; Provisional	Back alignment and domain information

>PRK10600 nitrate/nitrite sensor protein NarX; Provisional	Back alignment and domain information

>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	Back alignment and domain information

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans	Back alignment and domain information

>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK11644 sensory histidine kinase UhpB; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PRK13560 hypothetical protein; Provisional	Back alignment and domain information

>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]	Back alignment and domain information

>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]	Back alignment and domain information

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)	Back alignment and domain information

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]	Back alignment and domain information

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	Back alignment and domain information

>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional	Back alignment and domain information

>PF06705 SF-assemblin: SF-assemblin/beta giardin	Back alignment and domain information

>PRK13559 hypothetical protein; Provisional	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		800
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-05
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	3e-05
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	8e-05
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	1e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
2zbk_B		530	Type 2 DNA topoisomerase 6 subunit B; DNA binding	2e-04
2q2e_B		621	Type 2 DNA topoisomerase 6 subunit B; DNA-binding,	3e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	6e-04
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-04
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	7e-04
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	8e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 718  SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777
             L   + +L+ +  ELK +L KKE ELQ    R     +Q     + I EL      L +
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130

Query: 778  IFAEERDRR---EREEENLRKKIK 798
                E+  R   E+++ +L ++++
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELE 1154

PyMOL of 1i84

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530	Back alignment and structure

>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168	Back alignment and structure

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		800
d1f5na1		300	a.114.1.1 (A:284-583) Interferon-induced guanylate	1e-04
d1b63a2		218	d.122.1.2 (A:-2-216) DNA mismatch repair protein M	6e-04
d1h7sa2		203	d.122.1.2 (A:29-231) DNA mismatch repair protein P	7e-04

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300	Back information, alignment and structure


class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 14/75 (18%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 725 QLKQENHELKKRLEKKEGELQE--ERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 782
           + +Q   + ++  ++   +L E  E +R + L+ Q + +   ++E   +++ L + F +E
Sbjct: 229 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE---QEQLLKEGFQKE 285

Query: 783 RDRREREEENLRKKI 797
               + E ++L+ K+
Sbjct: 286 SRIMKNEIQDLQTKM 300

PyMOL of d1f5na1

>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218	Back information, alignment and structure

>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		800
d1uyla_		208	HSP90 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2iwxa1		213	HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T	99.8
d2gqpa1		227	HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	99.76
d1b63a2		218	DNA mismatch repair protein MutL {Escherichia coli	99.35
d1h7sa2		203	DNA mismatch repair protein PMS2 {Human (Homo sapi	99.3
d2hkja3		219	Topoisomerase VI-B subunit {Archaeon Sulfolobus sh	99.22
d1ei1a2		219	DNA gyrase B {Escherichia coli [TaxId: 562]}	97.88
d2c2aa2		161	Sensor histidine kinase TM0853 {Thermotoga maritim	97.64
d1kija2		212	DNA gyrase B {Thermus thermophilus [TaxId: 274]}	97.58
d1bxda_		161	Histidine kinase domain of the osmosensor EnvZ {Es	97.54
d1id0a_		146	Histidine kinase PhoQ domain {Escherichia coli [Ta	97.49
d1pvga2		239	DNA topoisomerase II {Baker's yeast (Saccharomyces	97.45
d1gkza2		193	Branched-chain alpha-ketoacid dehydrogenase kinase	97.45
d1jm6a2		190	Pyruvate dehydrogenase kinase {Rat (Rattus norvegi	97.42
d1ysra1		148	Sensor-type histidine kinase PrrB {Mycobacterium t	97.25
d1ixma_		179	Sporulation response regulatory protein Spo0B {Bac	97.16
d1s14a_		168	Topoisomerase IV subunit B {Escherichia coli [TaxI	96.79
d1y8oa2		125	Pyruvate dehydrogenase kinase {Human (Homo sapiens	96.54
d1r62a_		156	Nitrogen regulation protein NtrB, C-terminal domai	96.4
d1th8a_		139	Anti-sigma factor spoIIab {Bacillus stearothermoph	95.95

>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.6e-20  Score=152.89  Aligned_cols=114  Identities=22%  Similarity=0.356  Sum_probs=94.7

Q ss_pred             CCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCHHHHHC-------------CCCEEEEEEEECCCCCCEEEE
Q ss_conf             8644578853210280112012345114999999984122145423-------------994269999973689942699
Q 003718          125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL  191 (800)
Q Consensus       125 ~~~~~~~~~~~~~vhp~fLhSNsTsHkwpFsAIAELIDNAiDA~~~-------------gAt~V~Idi~~n~~~g~~~L~  191 (800)
                      .||+++.++..+.+|..|      |++++|  |+|||.||.||+.+             ......|.+..++  +..+|.
T Consensus         5 ~Fq~e~~~ll~ll~~slY------s~~~if--lRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~d~--~~~~l~   74 (208)
T d1uyla_           5 AFQAEIAQLMSLIINTFY------SNKEIF--LRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLT   74 (208)
T ss_dssp             ECCHHHHHHHHHHHHSCC------SCTTHH--HHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEE
T ss_pred             EEHHHHHHHHHHHHHHHC------CCCHHH--HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEECC--CCCEEE
T ss_conf             516879899999998605------784276--8989852999999888886279202147864222775237--764899


Q ss_pred             EEECCCCCCHHHHHHHHH-CCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             998899999886887320-2744444---------687666854554222122368969999312589
Q 003718          192 IEDNGGGMNPDKMRHCMS-LGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK  249 (800)
Q Consensus       192 I~DNG~GMs~eeL~~~Ls-fG~SsK~---------~~~~~IGrfGiGfKsAsmrLG~~V~V~SK~~g~  249 (800)
                      |.|||.||+.+++.+.|. +|.|.+.         .+.+.|||||+||+++|| ++.+|.|.||+.+.
T Consensus        75 I~DnGiGMt~~el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~~  141 (208)
T d1uyla_          75 IVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD  141 (208)
T ss_dssp             EEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS
T ss_pred             EECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEE-CCCCEEEEEECCCC
T ss_conf             97289545499998651211323348899864401210022020442577652-26814899844775

PyMOL of d1uyla_

>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	Back information, alignment and structure

>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}	Back information, alignment and structure

>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}	Back information, alignment and structure

>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure