Citrus Sinensis ID: 003722

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800
Protein Sequence
MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTAR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEEEccccccccEEEccccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccEEEEHHccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHEEEEEcccccHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccHHccccHHHHHHHccccccccccccccccccccccEEEEEcccccccccccEEEEcccccccEEEEEEEccccccccccEEEEEEEEEEcccccccEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
magirlhviSPLVLVAVgkcardpsvfVRKCAANALPKLHELRQEEITSAIEEIVGILlndrspgvvGAAAAAFAsicpnnftligRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCiesshsekdvfdvnvaledngipsrtydseLVNLVSRSYIEGLGEyltrssdtnarssdlngarftsgktndDVKLLLQctspllwshnSAVVLAAAGVhwimspkedVKRIVKPLLFILRSSGASKYVVLCNIQVFAKalphlfvphyedffvsssdsyqskALKLEILSSIVTESSISSVFKEFQdyirdpdrrfAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTsdiesgngeADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSldsikvpeARVMIIWMVGeyssvgvkIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCakggdmwtITRLFSYLLELAECDLNYDVRDRARFFKKLFShnlcsqvpeetnalqenkdlpLVLVECIFRKqenlaasepindrfylpgslsqivlhaapgyeplpkpcsslcddlgqfsnsidRTTAlgeewtgsssngtddpdtsgsldeesgsnydsqqsipglsdnsgtgdsasegdrncdpliqisdagiacsnengashsgfpdlegMMSKRALESwldeqpgssspsaseQIQVRQSSArisignigrqvkaksytlldpangnglKVYYSfsseastispqLVCLETFFENcssetmsevtlvdeeshkaldladltlattar
Flexible Loop (DISEMBL)
MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALedngipsrtydselvNLVSRSYIEGLGEyltrssdtnarssdlngarftsgktnddVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSivtessisSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLfrsldsikvpEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALgeewtgsssngtddpdtSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSsarisignigrqVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVtlvdeeshkaldladltlattar
Low Complexity Region (SEG)
MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGaaaaafaSICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKleilssivtessissvFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLiqsiisiksiikqDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKaldladltlattaR
Disordered region (IsUnstruct)
***IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYL************************DDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQF*********************************************************************************************************************************SIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSE****************************
Disordered Region (DISOPRED)
***IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLC***************LPLVLVECIFRKQENL*****INDRFYLPGSLSQIVLHAAPGYEPLP*******************************************************************************************************************************************************KAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEV***********************
Disordered Region (DISEMBL)
MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGE*************************************************DRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALES**********************SARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTAR
Disordered Region (DISPRO)
*AGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE*LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDI*SGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPC******************************************************************************************************EG*MS**A*ESWLDE****************QSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDE******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	800	2.2.26 [Sep-21-2011]
Q9M2T1	987	AP3-complex subunit beta-	no	no	0.968	0.785	0.578	0.0
Q13367	1082	AP-3 complex subunit beta	yes	no	0.626	0.463	0.334	2e-78
Q32PG1	1084	AP-3 complex subunit beta	no	no	0.655	0.483	0.325	2e-77
Q9JME5	1082	AP-3 complex subunit beta	yes	no	0.625	0.462	0.335	2e-77
Q7YRF1	1091	AP-3 complex subunit beta	no	no	0.615	0.450	0.331	5e-76
O00203	1094	AP-3 complex subunit beta	no	no	0.617	0.451	0.333	7e-75
Q556J8	1108	AP-3 complex subunit beta	yes	no	0.642	0.463	0.291	5e-65
Q9Z1T1	1105	AP-3 complex subunit beta	no	no	0.413	0.299	0.352	2e-54
Q759E2	781	AP-3 complex subunit beta	yes	no	0.552	0.565	0.272	2e-28
P52303	949	AP-1 complex subunit beta	no	no	0.536	0.452	0.259	2e-27

>sp|Q9M2T1|AP3BA_ARATH AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/805 (57%), Positives = 586/805 (72%), Gaps = 30/805 (3%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct: 1   MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 60

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAAAAF SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct: 61  DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 120

Query: 121 LVKESIMSSLLCIESS-HSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEY 178
           LV+ES+M S+    S+   EKD    ++ L+ ++G  S ++D  LV+LVS+ YI+G  EY
Sbjct: 121 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSDSFDVNLVSLVSKCYIQGPDEY 180

Query: 179 LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
           L+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P 
Sbjct: 181 LSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAPL 240

Query: 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALK 298
           EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA K
Sbjct: 241 EDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYK 300

Query: 299 LEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358
           LE+LS I T SSI+S+ +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLAL
Sbjct: 301 LEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLAL 360

Query: 359 IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVM 418
           +RQE    D ES +GEA VL+Q+++SI+++I++DP  HEKV+IQLFRSLDSIKV  AR  
Sbjct: 361 VRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARAT 420

Query: 419 IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 478
           IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   +
Sbjct: 421 IIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHML 480

Query: 479 TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVECI 537
            R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE +
Sbjct: 481 KRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEHV 538

Query: 538 FRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTA 597
           F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+   
Sbjct: 539 FGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDKQRE 597

Query: 598 LGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDS---ASEGDRNCD 654
              +  GS        ++S + DE   S+YDS+ S    SD S  GD    +++ +    
Sbjct: 598 AAADLDGSE-------ESSETGDENGSSDYDSESS--NGSDFSSEGDERTVSNDANDPAA 648

Query: 655 PLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSS 714
           PLIQIS+  ++             D E + S+RAL+ WLD+QP +S+ + S     + S 
Sbjct: 649 PLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQTPSALNSNQSSY 696

Query: 715 ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETM 774
           A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP  VC+E  FEN S+E +
Sbjct: 697 AKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPI 756

Query: 775 SEVTLVDEESHKALDLADLTLATTA 799
            EV L DEES K  D ++ TL   A
Sbjct: 757 LEVNLEDEESMKVADSSEQTLVGKA 781

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q13367|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2

 Score =  294 bits (753), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 314/583 (53%), Gaps = 82/583 (14%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           ++ IR+ +I P++++A+ + A D S +VRK AA+A+PKL+ L  ++    IE ++  LL 
Sbjct: 134 LSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQLIE-VIEKLLA 192

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D++  V G+   AF  +CP    LI +NYR LC +L DVEEWGQ+++I +L RY  A   
Sbjct: 193 DKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIISMLTRY--ARTQ 250

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
            +  +   SLL     ++EK  +      ED                     +G G   T
Sbjct: 251 FLSPTQNESLL---EENAEKAFYGSE---EDEA-------------------KGAGSEET 285

Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
            ++   +R   +          + D +LLL+ T PLL S ++AVV+A A +++ ++PK +
Sbjct: 286 AAAAAPSRKPYV---------MDPDHRLLLRNTKPLLQSRSAAVVMAVAQLYFHLAPKAE 336

Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
           V  I K L+ +LRS    +YVVL N+   +     +F P+ + F++ S+D  Q K LKLE
Sbjct: 337 VGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLE 396

Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
           +L+++  E++I +V +EFQ YIR  D+ F A T+ AIG CA  + ++ +TC+ GL+ L+ 
Sbjct: 397 VLTNLANETNIPTVLREFQTYIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLL- 455

Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
                      N +  V+ +S++ IK +++  P+ H ++I  L +  D+I+VP AR  I+
Sbjct: 456 ----------SNRDELVVAESVVVIKKLLQMQPAQHGEIIKHLAKLTDNIQVPMARASIL 505

Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC-AKGGDMWTIT 479
           W++GEY      +PR+   VL+ +A  F +E    KLQ++N   K+ L  +K   + T  
Sbjct: 506 WLIGEYCE---HVPRIAPDVLRKMAKSFTAEEDIVKLQVINLAAKLYLTNSKQTKLLT-- 560

Query: 480 RLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQEN-KDL-----PLV 532
               Y+L LA+ D NYD+RDRARF ++L        VP E+  AL  + K L     P  
Sbjct: 561 ---QYVLSLAKYDQNYDIRDRARFTRQLI-------VPSEQGGALSRHAKKLFLAPKPAP 610

Query: 533 LVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLP 575
           ++E  F+ +          D F L GSLS ++   A GY+ LP
Sbjct: 611 VLESSFKDR----------DHFQL-GSLSHLLNAKATGYQELP 642

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Homo sapiens (taxid: 9606)

>sp|Q32PG1|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1

 Score =  291 bits (744), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 203/624 (32%), Positives = 318/624 (50%), Gaps = 100/624 (16%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           ++ IR+ +I P++++A+ + + D S +VRK AA+A+ KL+ L  E+    IE I+  LL 
Sbjct: 139 LSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEMLIE-IIEKLLK 197

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D+S  V G+   AF  +CP+   LI +NYR LC +L DVEEWGQ+++I +L RY  A   
Sbjct: 198 DKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWGQVVIIHMLTRY--ARTQ 255

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
            V            S   + DV      LEDN      YDS+              E   
Sbjct: 256 FV------------SPWRQGDV------LEDN--EKDFYDSD--------------EEQK 281

Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
             +D   R   ++           D +LL++ T PLL S N+AVV+A A ++W ++PK +
Sbjct: 282 EKADKRKRPYAMD----------PDHRLLIRNTKPLLQSRNAAVVMAVAQLYWHIAPKSE 331

Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
              I K L+ +LRSS   +Y+VL NI   +     +F P+ + F+V S+D+   K LKLE
Sbjct: 332 AGIISKSLVRLLRSSREVQYIVLQNIATMSIQRKGMFEPYLKSFYVRSTDATMIKILKLE 391

Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
           IL+++  E++IS++ +EFQ Y++  D++FAA T+  IG CA  + ++++TC+ GL+ L+ 
Sbjct: 392 ILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATSITEVSDTCLNGLVCLL- 450

Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
                      N +  V+ +S++ IK +++  P  H ++I  + + LDSI VP AR  I+
Sbjct: 451 ----------SNRDEIVVAESVVVIKKLLQMQPMQHGEIIKHMAKLLDSITVPVARASIL 500

Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
           W++GE      ++P++   VL+  A  F SE    KLQILN   K+ L          T+
Sbjct: 501 WLIGENCE---RVPKIAPDVLRKTAKSFTSEDDLVKLQILNLGAKLYLTNSKQ-----TK 552

Query: 481 LFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 539
           L + Y+L L + D NYD+RDR RF ++L   N      E++ AL +         + IF 
Sbjct: 553 LLTQYILNLGKYDQNYDIRDRTRFIRQLIVPN------EKSGALSK-------YAKKIFL 599

Query: 540 KQENLAASE-PINDRFYLP-GSLSQIVLHAAPGY-------EPLPKPCSSLCDDLGQFSN 590
            Q+     E P  DR +   G+LS  +   A GY       E  P P     +       
Sbjct: 600 AQKPAPLLESPFKDRDHFQLGTLSHTLNTKATGYLELSNWPEVAPDPSVRNVE------- 652

Query: 591 SIDRTTALGEEWTGSSSNGTDDPD 614
                  L +EWT +     ++PD
Sbjct: 653 ----VIELAKEWTPAGKAKKENPD 672

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Bos taurus (taxid: 9913)

>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2

 Score =  290 bits (743), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 196/584 (33%), Positives = 314/584 (53%), Gaps = 84/584 (14%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           ++ IR+ +I P++++A+ + A D S +VRK AA+A+PKL+ L  ++    IE ++  LL 
Sbjct: 134 LSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQLIE-VIEKLLA 192

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D++  V G+   AF  +CP    LI +NYR LC +L DVEEWGQ+++I +L RY  A   
Sbjct: 193 DKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIISMLTRY--ARTQ 250

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT-YDSELVNLVSRSYIEGLGEYL 179
            +  +   SLL                  E+N  P +  Y SE          +G G   
Sbjct: 251 FLSPTQNESLL------------------EEN--PEKAFYGSE------EDEAKGPGSEE 284

Query: 180 TRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE 239
             ++   AR   +          + D +LLL+ T PLL S ++AVV+A A +++ ++PK 
Sbjct: 285 AATAALPARKPYV---------MDPDHRLLLRNTKPLLQSRSAAVVMAVAQLYFHLAPKA 335

Query: 240 DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKL 299
           +V  I K L+ +LRS    +YVVL N+   +     +F P+ + F++ S+D  Q K LKL
Sbjct: 336 EVGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKL 395

Query: 300 EILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359
           E+L+++  E++I +V +EFQ YIR  D+ F A T+ AIG CA  + ++ +TC+ GL+ L+
Sbjct: 396 EVLTNLANETNIPTVLREFQTYIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLL 455

Query: 360 RQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMI 419
                       N +  V+ +S++ IK +++  P+ H ++I  L +  D+I+VP AR  I
Sbjct: 456 -----------SNRDELVVAESVVVIKKLLQMQPAQHGEIIKHLAKLTDNIQVPMARASI 504

Query: 420 IWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC-AKGGDMWTI 478
           +W++GEY      +P++   VL+ +A  F +E    KLQ++N   K+ L  +K   + T 
Sbjct: 505 LWLIGEYCE---HVPKIAPDVLRKMAKSFTAEEDIVKLQVINLAAKLYLTNSKQTKLLT- 560

Query: 479 TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQEN-KDL-----PL 531
                Y+L LA+ D NYD+RDRARF ++L        VP E+  AL  + K L     P 
Sbjct: 561 ----QYVLSLAKYDQNYDIRDRARFTRQLI-------VPSEQGGALSRHAKKLFLAPKPA 609

Query: 532 VLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLP 575
            ++E  F+ +          D F L GSLS ++   A GY+ LP
Sbjct: 610 PILESSFKDR----------DHFQL-GSLSHLLNAKATGYQELP 642

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Mus musculus (taxid: 10090)

>sp|Q7YRF1|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1

 Score =  286 bits (731), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 303/574 (52%), Gaps = 82/574 (14%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           ++ IR+ +I P++++A+ + + D S +VRK AA+A+ KL+ L  E+    IE ++  LL 
Sbjct: 139 LSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEMLIE-VIEKLLK 197

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D+S  V G+   AF  +CP+   LI +NYR LC +L DVEEWGQ+++I +L RY  A   
Sbjct: 198 DKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWGQVVIIHMLTRY--ARTQ 255

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
            V            S   E D       LEDN                +++ E       
Sbjct: 256 FV------------SPWKEDD------GLEDN---------------EKNFYE------- 275

Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
            S D     +D     +     + D +LL++ T PLL S N+AVV+A A ++W +SPK +
Sbjct: 276 -SDDEQKEKTDQKKKPYA---MDPDHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSE 331

Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
           V  I K L+ +LRS+   +Y+VL NI   +     +  P+ + F+V S+D    K LKLE
Sbjct: 332 VGIISKSLVRLLRSNREVQYIVLQNIATMSIQRKGMLEPYLKSFYVRSTDPTMIKILKLE 391

Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
           IL+++  E++IS++ +EFQ Y++  D++FAA T+  IG CA  + ++ +TC+ GL+ L+ 
Sbjct: 392 ILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATSISEVTDTCLSGLVCLL- 450

Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
                      N +  V+ +S++ IK +++  P+ H ++I  + + LDSI VP AR  I+
Sbjct: 451 ----------SNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKLLDSITVPVARASIL 500

Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
           W++GE      ++P++   VL+ +A  F +E    KLQILN   K+ L          T+
Sbjct: 501 WLIGENCE---RVPKIAPDVLRKMAKSFTNEDDLVKLQILNLGAKLYLTNSKQ-----TK 552

Query: 481 LFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 539
           L + Y+L L + D NYD+RDR RF ++L   N      E++ AL +         + IF 
Sbjct: 553 LLTQYILNLGKYDQNYDIRDRTRFIRQLIVPN------EKSGALSK-------YAKKIFL 599

Query: 540 KQENLAASE-PINDRFYLP-GSLSQIVLHAAPGY 571
            Q+     E P  DR +   G+LS  +   A GY
Sbjct: 600 AQKPAPLLESPFKDRDHFQLGTLSHTLNTKAIGY 633

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Canis familiaris (taxid: 9615)

>sp|O00203|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3

 Score =  282 bits (722), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 302/572 (52%), Gaps = 78/572 (13%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           ++ IR+ +I P++++A+ + + D S +VRK AA+A+ KL+ L  E+    IE ++  LL 
Sbjct: 139 LSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEMLIE-VIEKLLK 197

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D+S  V G+   AF  +CP+   LI +NYR LC +L DVEEWGQ+++I +L RY  A   
Sbjct: 198 DKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWGQVVIIHMLTRY--ARTQ 255

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
            V            S   E D       LEDNG               +++ E       
Sbjct: 256 FV------------SPWKEGD------ELEDNG---------------KNFYE------- 275

Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
            S D     +D     +T    + D +LL++ T PLL S N+AVV+A A ++W +SPK +
Sbjct: 276 -SDDDQKEKTDKKKKPYT---MDPDHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSE 331

Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
              I K L+ +LRS+   +Y+VL NI   +     +F P+ + F+V S+D    K LKLE
Sbjct: 332 AGIISKSLVRLLRSNREVQYIVLQNIATMSIQRKGMFEPYLKSFYVRSTDPTMIKTLKLE 391

Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
           IL+++  E++IS++ +EFQ Y++  D++FAA T+  IG CA  + ++ +TC+ GL+ L+ 
Sbjct: 392 ILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATNILEVTDTCLNGLVCLL- 450

Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
                      N +  V+ +S++ IK +++  P+ H ++I  + + LDSI VP AR  I+
Sbjct: 451 ----------SNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKLLDSITVPVARASIL 500

Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
           W++GE      ++P++   VL+ +A  F SE    KLQILN   K+ L          T+
Sbjct: 501 WLIGENCE---RVPKIAPDVLRKMAKSFTSEDDLVKLQILNLGAKLYLTNSKQ-----TK 552

Query: 481 LFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 539
           L + Y+L L + D NYD+RDR RF ++L   N+ S    +          P  L+E  F+
Sbjct: 553 LLTQYILNLGKYDQNYDIRDRTRFIRQLIVPNVKSGALSKYAKKIFLAQKPAPLLESPFK 612

Query: 540 KQENLAASEPINDRFYLPGSLSQIVLHAAPGY 571
            +          D F L G+LS  +   A GY
Sbjct: 613 DR----------DHFQL-GTLSHTLNIKATGY 633

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Homo sapiens (taxid: 9606)

>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1 PE=3 SV=1

 Score =  249 bits (637), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 185/634 (29%), Positives = 305/634 (48%), Gaps = 120/634 (18%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEEITSAIEEIVGI 57
           M+ IR+  I  ++++A+ K  +D S FVRK AA A+ K+H+L   +QE +   +E    I
Sbjct: 118 MSSIRVIDIIEVIILAIEKSVKDTSPFVRKAAAFAIAKVHKLDCDKQEPLIDLLE----I 173

Query: 58  LLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVA 117
           LLND S  V+GAA  AF  +CP  F L+ ++YR +CQ+L D +EW Q+++++IL +Y   
Sbjct: 174 LLNDTSTMVLGAAIVAFNELCPQRFDLLHQHYRKICQLLADFDEWSQVIVLDILTKYA-- 231

Query: 118 SHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE 177
                     S   C +S+ ++K++                   +        Y +   +
Sbjct: 232 ---------RSQFRCPDSTMNDKNI------------------KQFKKKSKSFYSDEEDQ 264

Query: 178 YLTRSSDTNARSSDLNGARFTSGKTND-DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS 236
                 ++  +   L    F S +  D D +LLL+ T PLL S N+AVV+A + +++  +
Sbjct: 265 EDDEPENSLYKKKPLERDMFDSSEEIDMDHRLLLKSTLPLLQSRNNAVVMAVSSLYFYCA 324

Query: 237 PKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKA 296
           P  + +++ K L+ ILRS    +Y+ L NI       P +F PH  +FF+ SSD   S  
Sbjct: 325 PSIEAQKVGKSLVRILRSGPEVQYITLTNISTMVTLRPSMFEPHLSEFFIHSSDPEYSIK 384

Query: 297 LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLL 356
           LKLEIL+ + T  +I  + KEF++Y+++ D++F A T+ AIG CA  +P +  +C+ GL+
Sbjct: 385 LKLEILTRLATPENIGKILKEFKEYVKNEDKKFVAATIQAIGSCASTVPDVTESCIYGLM 444

Query: 357 ALIRQELLTSDIESGNGEADVLIQSIISIKSI----------------------IKQDPS 394
           +L+            N    V+ +S+I +K +                      +K++ S
Sbjct: 445 SLL-----------SNQSTVVVAESVIVLKRLLQLNATNEKLEKLEKEKEKEKDVKENQS 493

Query: 395 C------------HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 442
                        ++ +I+ L + LD+++VP AR  I+W++GEY     ++P +   V +
Sbjct: 494 TISKHSSSNNSIKYDNIILHLSKLLDTLQVPSARASIVWVIGEYC---YRVPLVAPDVFR 550

Query: 443 YLAWCFKSEAVETKLQILNTTIKVLL------------------CAKGGDMWTITRLFSY 484
            L   F  E    KL+ LN   K+ +                           IT +F Y
Sbjct: 551 KLVKSFSDEHESVKLETLNLGSKLYVQFTDNNSTTTTDNSIPNEFKNERTKEKITLMFQY 610

Query: 485 LLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENL 544
           +L LA+ D NYD+RD +R  K  + +       E T ++  N       ++ I   Q+ +
Sbjct: 611 VLNLAKFDQNYDIRDNSRMLKHFYFNT------ENTQSINSN-------IKQIVINQKPI 657

Query: 545 AASEPIND---RFYLPGSLSQIVLHAAPGYEPLP 575
                I++   RF L GSLS IV H A GY  LP
Sbjct: 658 PTETSISEDRQRFTL-GSLSHIVNHTALGYTALP 690

Part of the AP-3 complex, an adaptor-related complex which is essential for the compartmentalization of the endocytic pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2

 Score =  214 bits (545), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 209/374 (55%), Gaps = 43/374 (11%)

Query: 205 DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLC 264
           D +LL++ T PLL S N+AVV+A A ++W +SPK +   I K L+ +LRS+   +Y+VL 
Sbjct: 297 DHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSEAGVISKSLVRLLRSNREVQYIVLQ 356

Query: 265 NIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRD 324
           NI   +     +F P+ + F+V S+D    K LKLEIL+++  E++IS++ +EFQ Y+R 
Sbjct: 357 NIATMSIERKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTLLREFQTYVRS 416

Query: 325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384
            D++FAA T+  IG CA  + ++ +TC+ GL+ L+            N +  V+ +S++ 
Sbjct: 417 QDKQFAAATIQTIGRCATSISEVTDTCLNGLVCLL-----------SNRDEIVVAESVVV 465

Query: 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYL 444
           IK +++  P+ H ++I  + + LDSI VP AR  I+W++GE      ++P++   VL+ +
Sbjct: 466 IKKLLQMQPAQHGEIIRHMAKLLDSITVPVARASILWLIGENCE---RVPKIAPDVLRKM 522

Query: 445 AWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFS-YLLELAECDLNYDVRDRARF 503
           A  F SE    KLQILN   K+ L          T+L + Y+L L + D NYD+RDR RF
Sbjct: 523 AKSFTSEDDLVKLQILNLAAKLYLTNSKQ-----TKLLTQYILNLGKYDQNYDIRDRTRF 577

Query: 504 FKKLFSHNLCSQVPEETNALQENKD------LPLVLVECIFRKQENLAASEPINDRFYLP 557
            ++L   N      E++ AL +          P  L+E  F+ +          DRF L 
Sbjct: 578 IRQLIVPN------EKSGALSKYAKKIFLAPKPAPLLESPFKDR----------DRFQL- 620

Query: 558 GSLSQIVLHAAPGY 571
           G+LS  +   A GY
Sbjct: 621 GTLSHTLNIKASGY 634

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Mus musculus (taxid: 10090)

>sp|Q759E2|AP3B_ASHGO AP-3 complex subunit beta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL6 PE=3 SV=2

 Score =  128 bits (321), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 144/529 (27%), Positives = 229/529 (43%), Gaps = 87/529 (16%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           ++ I +  + P++L ++ K   D S  VR   A  L KL + +   I   +  ++  LL 
Sbjct: 142 LSDINIASLYPIILHSLKKTVIDSSEVVRCQVAMTLLKLFKEQGISIKDDVMPMLKSLLA 201

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D  P VV AA   F         L+  +YR  C IL  + E  Q ++I+I + Y      
Sbjct: 202 DSEPSVVSAALLLFQKAFAQELQLLHGHYRRYCSILNQLTENAQAIMIDIFIAYA----- 256

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALED--NGIPSRTYDSELVNLVSRSYIEGLGEY 178
             KE +   ++   SS +E       + L D  N IP   YD E                
Sbjct: 257 --KEYLPRPMVRDTSSDAEA------IQLPDSFNQIPFPVYDVEY--------------- 293

Query: 179 LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
                                   + D+ L L     LL S N+ V++A +   + +S  
Sbjct: 294 ------------------------DHDLNLFLSSLKKLLHSPNAMVIVAVSKAFYQLSSP 329

Query: 239 EDVKR--IVKPLLFILRSS---GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQ 293
           +  K   IV  LL +  SS      K +VL +I V+  + P LF  HY+ FF+  SD+  
Sbjct: 330 KTFKDSGIVDSLLRLTVSSYICSEIKELVLQSILVYCCSDPSLFRSHYKRFFLMPSDTEN 389

Query: 294 SKALKLEILSSIVTESSISSVFKEFQDYIRDPDR--RFAADTVAAIGLCARKLPKMANTC 351
               KL+ILS +V++S+   +  E + ++   ++      +    + +CA+   K ++  
Sbjct: 390 ISIFKLKILSILVSDSNCKHIVNELK-FVAGTEQSASILVEVSNTLSVCAQISSKWSSQI 448

Query: 352 VEGLLALIRQELLTSDIESGNGEAD--VLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS 409
           +  LL  I          S N   D  V    I  ++S+I++DP  H   +++L + L +
Sbjct: 449 ISWLLDRI----------SSNTPIDKEVTASQINVLRSLIQKDPIKHIATVVKLSKMLSN 498

Query: 410 IK-VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL- 467
              +P A+  IIW++GEY  V    PR+   VL+ L   F  E    +LQILN   K+L 
Sbjct: 499 HDLLPSAKAPIIWLLGEYVQVE---PRICPDVLRRLLPQFSKEHAHVRLQILNLAAKLLS 555

Query: 468 --LCAKGGDMW------TITRLFSYLLELAECDLNYDVRDRARFFKKLF 508
             + +  GDM        I ++F   L+LA+ D  YDVRDRAR    +F
Sbjct: 556 HDVDSYSGDMEYDIGTSRIGQMFEAALQLAKFDDEYDVRDRARMLASIF 604

Part of the AP-3 complex, an adapter-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 221/501 (44%), Gaps = 72/501 (14%)

Query: 19  KCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78
           K   DP+  +R  A   +     +R ++IT  + E +   L D  P V   AA   A + 
Sbjct: 93  KDCEDPNPLIRALAVRTM---GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLH 149

Query: 79  PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHS 138
             N  L              VE+ G    ++ L   +  S+ +V  + +++L  I  SH 
Sbjct: 150 DINAQL--------------VEDQG---FLDTLKDLISDSNPMVVANRVAALSEIAESHP 192

Query: 139 EKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFT 198
             ++ D+     +  + +    +E   +     ++ LG Y+ +  D  A+S         
Sbjct: 193 SSNLLDLKAQSINKLLTALNECTEWAQIF---ILDCLGNYMPKD-DREAQS--------- 239

Query: 199 SGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW----IMSPKED-----VKRIVKPLL 249
                     + +  +P L   NSAVVL+A  V      ++S   D     +K++  PL+
Sbjct: 240 ----------ICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATLLKKLAPPLV 289

Query: 250 FILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTES 309
            +L +    +YV L NI +  +  P +     + FFV  +D    K  KL+I+  + +++
Sbjct: 290 TLLSAEPEPQYVPLRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQA 349

Query: 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIE 369
           +I+ V  E ++Y  + D  F    V AIG CA K+ + A  CV  LL LI+ ++      
Sbjct: 350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV------ 403

Query: 370 SGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV 429
                  V+ ++I+ IK I ++ P+ +E VI  L  +LDS+  PEAR  +IW+VGEY+  
Sbjct: 404 -----NYVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSLDEPEARAAMIWIVGEYAER 458

Query: 430 GVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELA 489
                 +L + L      F  E+ + +LQ+L   +K+ L            L   +L LA
Sbjct: 459 IDNADELLESFLD----GFHDESTQVQLQLLTAIVKLFLKKPT----ETQELVQQVLSLA 510

Query: 490 ECDL-NYDVRDRARFFKKLFS 509
             D  N D+RDR   + +L S
Sbjct: 511 TQDSDNPDLRDRGYIYWRLLS 531

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	800
359486795	1140	PREDICTED: AP3-complex subunit beta-A-li	0.995	0.698	0.685	0.0
356501063	1129	PREDICTED: AP3-complex subunit beta-A-li	0.966	0.684	0.640	0.0
255584875	1121	conserved hypothetical protein [Ricinus	0.985	0.702	0.662	0.0
224109508	991	predicted protein [Populus trichocarpa]	0.965	0.779	0.658	0.0
356551707	1129	PREDICTED: AP3-complex subunit beta-A-li	0.966	0.684	0.643	0.0
357492243	1126	AP-3 complex subunit beta-2 [Medicago tr	0.97	0.689	0.640	0.0
449459904	1127	PREDICTED: AP3-complex subunit beta-A-li	0.973	0.691	0.590	0.0
240255649	1115	AP3-complex subunit beta-A [Arabidopsis	0.968	0.695	0.578	0.0
18410287	987	AP3-complex subunit beta-A [Arabidopsis	0.968	0.785	0.578	0.0
7076791	1123	adaptor protein/ adaptin-like [Arabidops	0.968	0.690	0.578	0.0

>gi|359486795|ref|XP_002278568.2| PREDICTED: AP3-complex subunit beta-A-like [Vitis vinifera] gi|296086225|emb|CBI31666.3| unnamed protein product [Vitis vinifera]

 Score = 1021 bits (2641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/800 (68%), Positives = 633/800 (79%), Gaps = 4/800 (0%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRL VI+P+VLVAV KCARDPSV+VRKCAANALPKLH+LR EE T A+EEIVGILLN
Sbjct: 129 MAGIRLLVIAPIVLVAVEKCARDPSVYVRKCAANALPKLHDLRIEENTPALEEIVGILLN 188

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAAAAF S+CPNN +LIGRNYR LC++LPDVEEWGQILLIEILLR+V+A HG
Sbjct: 189 DHSPGVVGAAAAAFTSVCPNNLSLIGRNYRRLCEVLPDVEEWGQILLIEILLRFVIAKHG 248

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEYL 179
           LV+ESIM    C ESS SEKD  D+N A E DNG   R + SELVN+VSR YIEG  EYL
Sbjct: 249 LVQESIMFQSCCTESSQSEKDGSDINSAFEEDNGDTGRGFMSELVNMVSRCYIEGPDEYL 308

Query: 180 TRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE 239
           +R S  N  SS L+ + F SG+ NDDVK+LLQCTSPLLWSHNSAVVLAAAGVHWIM+P+E
Sbjct: 309 SRLSYINEVSSGLDRSCFMSGRGNDDVKMLLQCTSPLLWSHNSAVVLAAAGVHWIMAPRE 368

Query: 240 DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKL 299
           DVKRIVKPLLF+LRSS  SKYVVLCNIQVFAKA+P LF PH+EDFF+SSSDSYQ KALKL
Sbjct: 369 DVKRIVKPLLFLLRSSHVSKYVVLCNIQVFAKAMPFLFAPHFEDFFISSSDSYQIKALKL 428

Query: 300 EILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359
           EILSSI  +SSISS+F+EFQDYIRDPDRRFAADTV AIGLCA++LPK+AN C+EGLLAL 
Sbjct: 429 EILSSIAMDSSISSIFQEFQDYIRDPDRRFAADTVTAIGLCAQRLPKVANICLEGLLALT 488

Query: 360 RQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMI 419
           R+E L  D    + E ++LIQ+I+SI++I+KQDP  HEKVI+QL RSLDSIKVP AR +I
Sbjct: 489 REEYLIGDFVCMDEETNILIQAIMSIEAILKQDPPAHEKVIVQLVRSLDSIKVPAARAII 548

Query: 420 IWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 479
           IW++GEY+++G  IPRMLTTVL YLA CF SEA ETKLQILNT +KVLLCAKG D+WT  
Sbjct: 549 IWIIGEYNTIGEIIPRMLTTVLTYLARCFASEAQETKLQILNTAVKVLLCAKGKDLWTFK 608

Query: 480 RLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 539
            + SY+LELA+CDL+YDVRDRA   K+L S  L   + EET+ L + KD+P +L ECIFR
Sbjct: 609 SVLSYVLELAKCDLSYDVRDRAHILKELMSCYLGQDLEEETDCLPQ-KDIPQILAECIFR 667

Query: 540 KQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALG 599
            Q    + EPIN RFYLPGSLSQIVLHAAPGYEPLPKPCS LC+DL Q  N +      G
Sbjct: 668 GQRKPMSPEPINFRFYLPGSLSQIVLHAAPGYEPLPKPCSLLCNDLHQRLNVVQGIEGSG 727

Query: 600 EEWTGSSSNGTDDPDT-SGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQ 658
           E  T S S  TDDPD  S S +EES S Y SQ SI   S +   G S SE D N DPLIQ
Sbjct: 728 EGATNSDSYETDDPDMLSQSANEESTSGYSSQNSISRSSGSDEPG-SESEDDDNVDPLIQ 786

Query: 659 ISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARIS 718
            SD GI+   + G S SG   +E +MSK+ LESWLDEQPG S P+ S+Q QVR+SSARIS
Sbjct: 787 FSDVGISNKKQTGVSQSGSDSMEELMSKQTLESWLDEQPGLSDPNLSKQSQVRRSSARIS 846

Query: 719 IGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVT 778
           IG+IG +VK K Y LLDP NGNGL+V YSFSSE S++SPQLVC+E  FENCS+E+MS+V 
Sbjct: 847 IGDIGGRVKPKIYGLLDPTNGNGLRVNYSFSSEVSSMSPQLVCVELIFENCSAESMSKVL 906

Query: 779 LVDEESHKALDLADLTLATT 798
           LVDEES+K LD  D +L  T
Sbjct: 907 LVDEESNKGLDSEDQSLVAT 926

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501063|ref|XP_003519348.1| PREDICTED: AP3-complex subunit beta-A-like [Glycine max]

 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/790 (64%), Positives = 606/790 (76%), Gaps = 17/790 (2%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLHVI+PLV+VAV KCARDPSV+VRKCAANALPKLH+LR EE  SAIEEIVG+LLN
Sbjct: 129 MAGIRLHVIAPLVIVAVQKCARDPSVYVRKCAANALPKLHDLRMEEHASAIEEIVGLLLN 188

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAA+AF S+CP+NF+LIGRNYR LC+ILPDVEEWGQI+LI ILLRYV+A HG
Sbjct: 189 DHSPGVVGAAASAFTSVCPDNFSLIGRNYRRLCEILPDVEEWGQIILIGILLRYVIARHG 248

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
           LVKESIM SL   + ++ E+D   +  + ED G       SEL  +V + YIEG  EYL+
Sbjct: 249 LVKESIMFSLYNKDINNLEEDESYIT-SKEDAGYSIDKTVSELATMVFQCYIEGPDEYLS 307

Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
           RSS TN  +  L+ +++TS  +ND VK+LLQCTSPLLWS+NSAVVLAAAGVHWIM+ KE 
Sbjct: 308 RSSSTNRVAPKLDVSQYTSC-SNDVVKILLQCTSPLLWSNNSAVVLAAAGVHWIMASKEH 366

Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
           + RIVKPLLF+LRSS AS+YVVLCNIQVFAKA+P LF PHY+DFF+ SSDSYQ KALKL+
Sbjct: 367 ITRIVKPLLFVLRSSSASRYVVLCNIQVFAKAIPSLFAPHYQDFFICSSDSYQIKALKLD 426

Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
           ILSSI T+SSIS ++KEFQDYI DPDRRFAADTVAAIGLCA++LPKMA  C+EGLL L+R
Sbjct: 427 ILSSIATDSSISVIYKEFQDYIGDPDRRFAADTVAAIGLCAQRLPKMATLCLEGLLTLVR 486

Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
           Q+    +I S +GE  VLIQ+II IKSIIK +PS +EKVIIQL RSLD IKVP AR MII
Sbjct: 487 QDFFCGEIRSLDGEEGVLIQAIIFIKSIIKLEPSSYEKVIIQLVRSLDKIKVPAARAMII 546

Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
           W++G+Y S+G  IPRML+TVLKYLA CF SEA+E KLQILNTT KVLLC KG D+ T+ +
Sbjct: 547 WILGKYCSLGDIIPRMLSTVLKYLALCFTSEALEAKLQILNTTAKVLLCIKGEDILTVRK 606

Query: 481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRK 540
           +++Y++ELAECDLNYD+RDR+RF KKL S NL SQ  EE N+  + +D   +L ECIF  
Sbjct: 607 IWTYIIELAECDLNYDIRDRSRFLKKLLSSNLESQHGEEENSESQKRDQSHILSECIFGG 666

Query: 541 QENLAA--SEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTAL 598
           Q       SEPI+ RFYLPGSLSQ+V HAAPGYEPLPKPCS    DL Q+  +       
Sbjct: 667 QTKAVTVPSEPIDYRFYLPGSLSQLVFHAAPGYEPLPKPCSLPYTDLDQYDGA------- 719

Query: 599 GEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSAS--EGDRNCDPL 656
               + S S+  D+  TSGSLDEES S+Y S+QSI    + +G+ +S S  EG+ N DPL
Sbjct: 720 ----SKSDSDEEDNTGTSGSLDEESASDYSSEQSITASGEVTGSDESVSGNEGEDNADPL 775

Query: 657 IQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSAR 716
           IQISD    C N+NG + SG      +MS ++LESWLDE   SS  S  EQ +VR+SSAR
Sbjct: 776 IQISDTVNVCENQNGGAPSGAAGFRDLMSTKSLESWLDEPARSSKGSEIEQSRVRRSSAR 835

Query: 717 ISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSE 776
           I+IGNIG +VK K Y+LLDP NGNGLKV YSFSSE S+IS  LVCLE  FENCS E M +
Sbjct: 836 ITIGNIGGRVKPKCYSLLDPVNGNGLKVNYSFSSETSSISSHLVCLEVLFENCSLEPMFD 895

Query: 777 VTLVDEESHK 786
           + L++E+  K
Sbjct: 896 IVLIEEDYSK 905

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584875|ref|XP_002533153.1| conserved hypothetical protein [Ricinus communis] gi|223527048|gb|EEF29234.1| conserved hypothetical protein [Ricinus communis]

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/802 (66%), Positives = 626/802 (78%), Gaps = 14/802 (1%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLHVI+PLVLVA+GKCARDPSV+VRKCAANALPKLH+L  +E ++ I+EIVG+LL+
Sbjct: 129 MAGIRLHVIAPLVLVALGKCARDPSVYVRKCAANALPKLHDLHIDEHSTTIQEIVGVLLS 188

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAAAAF S+CPNN++LIGRNYR LC++LPDVEEWGQI+LI ILLRY +A HG
Sbjct: 189 DHSPGVVGAAAAAFTSVCPNNYSLIGRNYRRLCEVLPDVEEWGQIVLIGILLRYAIARHG 248

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEYL 179
           LVKES+M  L   ESS SEKD  DV  +LE +N   S  YDSEL ++VSRSYIEG  EYL
Sbjct: 249 LVKESLMFFLHSKESSQSEKDGSDVEFSLEKENSSVSWKYDSELASMVSRSYIEGPDEYL 308

Query: 180 TRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE 239
            R+S  ++ SS+ NGA+FTS K+NDDVK+LLQCTSPLLWS+NSAVVLAAAGVHWIM+P E
Sbjct: 309 ARTSYADSVSSEFNGAKFTSVKSNDDVKILLQCTSPLLWSNNSAVVLAAAGVHWIMAPFE 368

Query: 240 DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKL 299
           DVKRIVKPLLF+LRSS  SKYVVLCNIQVFAKA+P LF P++EDFF++SSDSYQ KALKL
Sbjct: 369 DVKRIVKPLLFLLRSSTTSKYVVLCNIQVFAKAIPSLFAPYFEDFFINSSDSYQIKALKL 428

Query: 300 EILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359
           EIL  I TESSISS+FKEFQDYIRD DRRFAADTVAAIGLCA++LPKMANTC+EGLLAL 
Sbjct: 429 EILCCITTESSISSIFKEFQDYIRDSDRRFAADTVAAIGLCAQRLPKMANTCLEGLLALT 488

Query: 360 RQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMI 419
           RQE L     S +GEA VL+Q+I SIK IIKQ P  HEKV+IQL RSLDSIKVP AR +I
Sbjct: 489 RQEYLAGVFGSTDGEAGVLVQAITSIKLIIKQGPPTHEKVVIQLVRSLDSIKVPAARAII 548

Query: 420 IWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 479
           IWM+GEY+ +G  IPRMLTTVLKYLAW F SEA+ETKLQILNT +KVL  AK  D+ T+ 
Sbjct: 549 IWMMGEYNDLGEIIPRMLTTVLKYLAWSFSSEALETKLQILNTIVKVLSGAKEEDLCTLK 608

Query: 480 RLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQ-VPEETNALQENKDLPLVLVECIF 538
           +L SY+LELAE DLNY+VRDRAR  KKL S  L SQ + + TN+  + +DL  VL EC F
Sbjct: 609 KLGSYVLELAEFDLNYNVRDRARLLKKLLSSKLGSQEIEDNTNSPHQVEDLSHVLAECFF 668

Query: 539 RKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTAL 598
           R +   ++SEPIN R YLPGSLSQIVLH APGYEPLP PCS L D+L   SNS+  T   
Sbjct: 669 RGKTKHSSSEPINYRIYLPGSLSQIVLHGAPGYEPLPNPCSILHDELSHLSNSMLETDMS 728

Query: 599 GEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQ-SIPGLSDNSG--TGDSASEGDRNCDP 655
           GE   G+ S+GT     SGS D+E+   Y S+  +     D++G  TG  +  G+ + DP
Sbjct: 729 GE---GTDSSGT----ISGSSDQETALGYSSEHCNTESSGDDAGDETGSVSGSGN-DADP 780

Query: 656 LIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSA 715
           LIQ+SD G    N+ G   +   DL  +MSKR+LESWLDEQP  S+P  SE+ QV +SSA
Sbjct: 781 LIQVSDVGDGHINQTGVQPAS-SDLGELMSKRSLESWLDEQPDLSNPGTSERSQVYRSSA 839

Query: 716 RISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMS 775
           RISI +IG +VK  SY LLDPANGNGLKV YSFSSE S+IS  LVC+E  FENCS+ET+S
Sbjct: 840 RISIRDIGSRVKPNSYGLLDPANGNGLKVDYSFSSEISSISHLLVCVEVSFENCSTETIS 899

Query: 776 EVTLVDEESHKALDLADLTLAT 797
           EV LVDEES+KA D  + +L +
Sbjct: 900 EVMLVDEESNKAPDSTESSLTS 921

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109508|ref|XP_002315219.1| predicted protein [Populus trichocarpa] gi|222864259|gb|EEF01390.1| predicted protein [Populus trichocarpa]

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/784 (65%), Positives = 610/784 (77%), Gaps = 12/784 (1%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLHVI+PLVLVAVGKCA+D +V+VRKCAANALPKLH+L  EE +S IEEIVG LL+
Sbjct: 1   MAGIRLHVIAPLVLVAVGKCAKDMAVYVRKCAANALPKLHDLYLEENSSTIEEIVGTLLS 60

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAAAAF S+CPNN++LIGR YR LC+ILPDVEEWGQI+LI ILLRY +A HG
Sbjct: 61  DSSPGVVGAAAAAFTSVCPNNYSLIGRRYRRLCEILPDVEEWGQIVLIGILLRYAIARHG 120

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEYL 179
           LVKESIM SL   E SHSEKD  D + A + D    S  YDS+L   +SR YIEG  EYL
Sbjct: 121 LVKESIMFSLHGRERSHSEKDDSDDDFAFKNDVSGTSGKYDSDLARTISRCYIEGPDEYL 180

Query: 180 TRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE 239
           +RSS  N  S + N A+FTSG++ND+VK+LLQ TSPLLWS+NSAVV+AAAGVHWIM+P E
Sbjct: 181 SRSSYANRISFEFNEAKFTSGRSNDEVKILLQGTSPLLWSNNSAVVVAAAGVHWIMAPTE 240

Query: 240 DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKL 299
           +VKRIVKPLLF+LRSS  SKYVVLCNIQVFAKA+P LF P++EDFFV SSDSYQ KALKL
Sbjct: 241 EVKRIVKPLLFLLRSSNTSKYVVLCNIQVFAKAMPSLFSPYFEDFFVVSSDSYQIKALKL 300

Query: 300 EILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359
           EIL SI T+SSISS+FKEFQDYIRDPDRRF+AD VAAIGLCA+++P MA+TC+EGLLAL 
Sbjct: 301 EILCSIATDSSISSIFKEFQDYIRDPDRRFSADAVAAIGLCAKQIPNMASTCLEGLLALA 360

Query: 360 RQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMI 419
           +Q+L T D  S NGEA +LIQ+I+SIKSII QDP  HEKV+IQL RSLDSIKVP AR  I
Sbjct: 361 KQDLSTCDPGSANGEAGILIQAIMSIKSIITQDPPTHEKVVIQLVRSLDSIKVPAARATI 420

Query: 420 IWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 479
           IWM+GEY ++G  IPRMLT VLKYLAW F SEA+ETKLQILNTT+KVL  AKG +M T  
Sbjct: 421 IWMIGEYRNLGEIIPRMLTIVLKYLAWSFTSEALETKLQILNTTVKVLSGAKGEEMQTFK 480

Query: 480 RLFSYLLELAECDLNYDVRDRARFFKKLFSHNL-CSQVPEETNALQENKDLPLVLVECIF 538
           +L SY++ELAECDLNYDVRDRARF KKL   +L C ++  +TN   + +DLP VL EC+F
Sbjct: 481 KLGSYVIELAECDLNYDVRDRARFLKKLLPCSLDCGELELDTNCPPKKQDLPQVLAECMF 540

Query: 539 RKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTAL 598
           + Q    + E ++ R YLPGSLSQIVLHAAPGYEPLPKPCS L        + +D     
Sbjct: 541 QGQARQLSPESMDYRVYLPGSLSQIVLHAAPGYEPLPKPCSVL-------DHELDTNVIR 593

Query: 599 GEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGD-RNCDPLI 657
           G +  G  ++GTD    SGS  EES S+Y S++S+   S + G+ +++S  +  N DPLI
Sbjct: 594 GVDTLGEGADGTD--SLSGSSYEESASDYSSERSMTVSSGDGGSDETSSTSEVDNTDPLI 651

Query: 658 QISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARI 717
           Q+SD G A  N+NGA  S   DLE +MSKR+LE+WLD QPG S  S SEQ Q+R+SSARI
Sbjct: 652 QLSDTGDANQNQNGAPQSASTDLEELMSKRSLETWLDAQPGLSILSTSEQSQLRKSSARI 711

Query: 718 SIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEV 777
           SI +I  +VK KSY LLDPANGNGLKV YSFS E S+ISP LV +E  FENC+ ET+SEV
Sbjct: 712 SIRDISSRVKPKSYRLLDPANGNGLKVDYSFSPEISSISPLLVSVEVSFENCTDETISEV 771

Query: 778 TLVD 781
            LVD
Sbjct: 772 ALVD 775

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551707|ref|XP_003544215.1| PREDICTED: AP3-complex subunit beta-A-like [Glycine max]

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/790 (64%), Positives = 601/790 (76%), Gaps = 17/790 (2%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLHVI+PLV+VAV KCARDPSV+VRKCAANALPKLH+LR EE  SAIEEIVG+LLN
Sbjct: 129 MAGIRLHVIAPLVIVAVQKCARDPSVYVRKCAANALPKLHDLRMEEHASAIEEIVGLLLN 188

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAA+AF S+CPNNF+LIGRNYR LC+ILPDVEEWGQI+LI ILLRYV+A HG
Sbjct: 189 DHSPGVVGAAASAFTSVCPNNFSLIGRNYRRLCEILPDVEEWGQIILIGILLRYVIARHG 248

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
           LVKESIM SL   +  + E+D   +  + ED G       SEL  +V + YIEG  EYL+
Sbjct: 249 LVKESIMFSLYNKDIDNLEEDESYIT-SKEDAGYSIDKTVSELATMVFQCYIEGPDEYLS 307

Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
           RSS TN  +  L+ +++TS  +ND VK+LL CTSPLLWS+NSAVVLAAAGVHWIM+ KE 
Sbjct: 308 RSSSTNRVAPKLDVSQYTSC-SNDVVKILLHCTSPLLWSNNSAVVLAAAGVHWIMASKEH 366

Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
           +KRIVKPLLF+LRSS AS+YVVLCNIQVFAKA+P LF PHY+DFF+ SSDSYQ KALKL+
Sbjct: 367 IKRIVKPLLFVLRSSSASRYVVLCNIQVFAKAIPSLFAPHYQDFFICSSDSYQIKALKLD 426

Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
           +LSSI T+SSIS ++KEFQDYIRDP+RRFAADTVAA+GLCA++LPKMA +CVEGLL L+R
Sbjct: 427 VLSSIATDSSISFIYKEFQDYIRDPNRRFAADTVAALGLCAQRLPKMATSCVEGLLTLVR 486

Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
           QE    +I S +GE  VL Q+IISIKSIIK +PS +EKVIIQL  SLD IKVP AR MII
Sbjct: 487 QEFFCGEIRSLDGEEGVLTQAIISIKSIIKLEPSSYEKVIIQLVCSLDKIKVPAARAMII 546

Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
           W++GEY S+G  IPRML+TVLKYLA CF SEA+E KLQ LNTT KVLLC KG D+ T+ +
Sbjct: 547 WILGEYCSLGDIIPRMLSTVLKYLARCFTSEALEAKLQFLNTTAKVLLCIKGEDILTVRK 606

Query: 481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRK 540
           ++SY++ELAE DLNYD+RDR+RF KKL S NL SQ  EE N+  + +D   +L ECIF  
Sbjct: 607 VWSYVIELAERDLNYDIRDRSRFLKKLLSSNLESQHGEEENSESQKRDQSYILAECIFGG 666

Query: 541 QEN--LAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTAL 598
           Q       SEPI+ RFYLPGSLSQ+V HAAPGYEPLPKPCS    DL Q+  +       
Sbjct: 667 QTKAMTVPSEPIDYRFYLPGSLSQLVFHAAPGYEPLPKPCSLPYTDLDQYDGA------- 719

Query: 599 GEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSAS--EGDRNCDPL 656
                 S S+  DD  TSGSLDE S S+Y S+QSI    + SG+ +S S  EG+ N DPL
Sbjct: 720 ----AKSDSDEEDDTGTSGSLDEGSASDYSSEQSITASGEASGSDESVSGNEGEDNADPL 775

Query: 657 IQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSAR 716
           IQISD G  C  +N  + SG      +MS ++LESWLDE   SS  S  EQ QVR+SSAR
Sbjct: 776 IQISDTGNVCEYQNSGAPSGTAGFRDLMSTKSLESWLDEPARSSKGSEIEQSQVRRSSAR 835

Query: 717 ISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSE 776
           I+IGNIG +VK K YTLLDP NGNGLKV YSFSSE S+IS  LVCLE  FENCS E M +
Sbjct: 836 ITIGNIGNRVKPKCYTLLDPVNGNGLKVNYSFSSETSSISSHLVCLEVLFENCSLEPMFD 895

Query: 777 VTLVDEESHK 786
           + L++E+  K
Sbjct: 896 IVLIEEDYSK 905

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492243|ref|XP_003616410.1| AP-3 complex subunit beta-2 [Medicago truncatula] gi|355517745|gb|AES99368.1| AP-3 complex subunit beta-2 [Medicago truncatula]

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/796 (64%), Positives = 610/796 (76%), Gaps = 20/796 (2%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLH I+PLVLVAVGKCARDPSV+VRKCAANALPKLH+LR +E  +AIEE+VG+LLN
Sbjct: 129 MAGIRLHAIAPLVLVAVGKCARDPSVYVRKCAANALPKLHDLRMDEHATAIEEMVGLLLN 188

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAA+AF S+CPNNF+LIGRNYR LC+ILPDVEEWGQI+LI ILLRYV+A HG
Sbjct: 189 DHSPGVVGAAASAFTSVCPNNFSLIGRNYRKLCEILPDVEEWGQIMLIGILLRYVIARHG 248

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
           LVKESIM S    +  + ++D  DV +  +D G  +    SEL +++ + YIEG  EYL+
Sbjct: 249 LVKESIMFSSYNKDHGNLDEDEHDVTLK-KDAGYATEKTVSELTHMIFQCYIEGPDEYLS 307

Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
           RSS T   +  L+ + +TS  +N+ V++LLQCTSPLLWSHNSAVVLAAAGVHWIM+PKED
Sbjct: 308 RSSSTIKIAPKLDESLYTSC-SNEVVRILLQCTSPLLWSHNSAVVLAAAGVHWIMAPKED 366

Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
           VKRIVKPLLF+LRSS AS+YVVLCNIQVFAKA+P LF PHYED F+ S DSYQ KALKL+
Sbjct: 367 VKRIVKPLLFVLRSSPASRYVVLCNIQVFAKAMPSLFAPHYEDLFIYSVDSYQIKALKLD 426

Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
           ILS I ++SSIS + KEFQDYIRDPDRRFAADTVAAIGLCA++LPKMA  C+EGLLALIR
Sbjct: 427 ILSIIASDSSISFILKEFQDYIRDPDRRFAADTVAAIGLCAQRLPKMATACLEGLLALIR 486

Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
           QE L  +I S +GE  VLIQ+I+SI SIIK +P  +EKVIIQL RSLD+IKVP AR MI+
Sbjct: 487 QEFLCGEIRSLDGEEGVLIQAIMSIISIIKLEPPSYEKVIIQLVRSLDTIKVPAARAMIV 546

Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
           W++GEY S+G  IPRML+TVLKYLAWCF SE +ETKLQILNT  KV LC KG D WT+ +
Sbjct: 547 WLLGEYCSLGEMIPRMLSTVLKYLAWCFTSEGLETKLQILNTITKVSLCIKGEDSWTLRK 606

Query: 481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRK 540
           +++Y++ELAE DLNYD+RDR+RF KKL S NL SQ  EE N+ +  KD   VL ECIF  
Sbjct: 607 IWTYVIELAERDLNYDIRDRSRFLKKLLSSNLESQNVEEENS-ESRKDQSSVLAECIFGG 665

Query: 541 QENLAA--SEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTAL 598
           Q       SEPINDRFYLPGSLSQ+V HAAPGYEPLPKPCS     + Q+  +++     
Sbjct: 666 QTKTVTVPSEPINDRFYLPGSLSQLVFHAAPGYEPLPKPCS--LPYIDQYDGAVN----- 718

Query: 599 GEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSAS--EGDRNCDPL 656
                 S S   DDP +SGS D+E+ S+Y S+QSI G S+ SG+ ++ S  EGD N DPL
Sbjct: 719 ------SDSEEVDDPGSSGSSDDENASDYSSEQSISGSSEGSGSNETVSGDEGDNNDDPL 772

Query: 657 IQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSAR 716
           IQIS+      N+NG  HSG      +MS ++LESWLDE   SS  S +EQ QVR+SSAR
Sbjct: 773 IQISETSNVNENQNGGDHSGSSGFNDLMSTKSLESWLDEPSKSSKGSETEQSQVRKSSAR 832

Query: 717 ISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSE 776
           I+IG+IG +VK K YTLLDPANG GL V YSFSSE S+IS  LVCLE  FENCS E M +
Sbjct: 833 ITIGDIGSRVKPKCYTLLDPANGKGLMVNYSFSSETSSISSHLVCLEVLFENCSLEPMFD 892

Query: 777 VTLVDEESHKALDLAD 792
           + L+DE+S K+ D  D
Sbjct: 893 IVLLDEDSSKSADSTD 908

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459904|ref|XP_004147686.1| PREDICTED: AP3-complex subunit beta-A-like [Cucumis sativus] gi|449503249|ref|XP_004161908.1| PREDICTED: AP3-complex subunit beta-A-like [Cucumis sativus]

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/808 (59%), Positives = 579/808 (71%), Gaps = 29/808 (3%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLH I+PL LVAV K ARDPSV+VRKCAANALPKLH+LR EEI+S I+EIV ILL 
Sbjct: 129 MAGIRLHAIAPLALVAVRKGARDPSVYVRKCAANALPKLHDLRLEEISSDIKEIVLILLG 188

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAAAAFASICPN+ TLIG+NYR LC++LPDVEEWGQI+LI ILLRY VAS G
Sbjct: 189 DSSPGVVGAAAAAFASICPNDLTLIGKNYRRLCEVLPDVEEWGQIILIGILLRYAVASIG 248

Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE--------LVNLVSRSYI 172
           LV+ESIM SL  +E S SEK+    +VA   N   S   DSE        L N++SR Y 
Sbjct: 249 LVRESIMYSLQSVEDSSSEKN----DVA---NNFTSANEDSEMNGFNETALTNMISRCYN 301

Query: 173 EGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVH 232
           EG  EYL+R S +N     ++   F S K NDD+++LLQCTSPLLWS+NSAVVLAAAGVH
Sbjct: 302 EGPDEYLSRLSCSNEVFPKMDDGHFVSIKENDDIRILLQCTSPLLWSNNSAVVLAAAGVH 361

Query: 233 WIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSY 292
           WIM+P+E++KRIVKPL+F+LRS  A+KYVVLCNIQVFAKA+P LF PHYE+FF+ SSDSY
Sbjct: 362 WIMAPRENIKRIVKPLVFLLRSCDAAKYVVLCNIQVFAKAMPSLFAPHYENFFICSSDSY 421

Query: 293 QSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCV 352
           Q KALKLEILSSI T+SSI S+F EFQDYIR+P+RRFAADTVAAIGLCA +LPK+A  C+
Sbjct: 422 QVKALKLEILSSIATDSSILSIFNEFQDYIRNPNRRFAADTVAAIGLCAGRLPKIAKMCL 481

Query: 353 EGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKV 412
            GLL+LIRQ+  T D  + + EA VL Q+I SIK I+K+DP+ +EKVIIQL RSLDS+KV
Sbjct: 482 NGLLSLIRQDTSTCDNGAMDEEAAVLTQAITSIKFIVKEDPASYEKVIIQLIRSLDSVKV 541

Query: 413 PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472
           P AR MIIWMVGEYS++G  IPRML  V KYLA  F SEA+ETKLQILNT IKVLL +K 
Sbjct: 542 PAARAMIIWMVGEYSTLGDIIPRMLVIVAKYLARSFISEALETKLQILNTMIKVLLRSKE 601

Query: 473 GDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLV 532
            DM T   +  Y+LE+ +CDLNYD+RDRA F +KL S +L  + PEE+  L + +D    
Sbjct: 602 EDMPTFKVILGYMLEVGKCDLNYDLRDRAAFIQKLLSSHLDMEAPEES--LSKPRDQSWE 659

Query: 533 LVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSI 592
           L E IF  Q      EPIN RFYLPGSLSQIV HAAPGYEPLPKPC            ++
Sbjct: 660 LAERIFGGQLKPIQPEPINYRFYLPGSLSQIVFHAAPGYEPLPKPC------------TL 707

Query: 593 DRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRN 652
           D   +   +     ++ T+    S   ++ +               +   G +    +  
Sbjct: 708 DEAASTSGDGDSYETDNTESSSGSSDEEDSASDYSSQHSLSGSSGRDESYGANRQHENAG 767

Query: 653 CDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQ 712
            DPLI++SD G     +NGAS SG  +L+ +MSK ALESWL+EQP  +S S SE+ +VR+
Sbjct: 768 ADPLIELSDHGSTHKIQNGASASGSAELDELMSKNALESWLNEQPNLASLSTSEKAEVRR 827

Query: 713 SSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSE 772
           SSARISIGN+G+ V  K+Y LLDPA GNGLKV YSFSS+ S+ISP  VC+E  F+NCS+E
Sbjct: 828 SSARISIGNLGKHVIRKNYQLLDPATGNGLKVEYSFSSQISSISPLHVCIEASFKNCSAE 887

Query: 773 TMSEVTLVDEESHKALDLADLTLATTAR 800
            M+E+ L  EES KA+D  D  L  + R
Sbjct: 888 PMTEIMLTHEESDKAIDSKDEILVRSER 915

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255649|ref|NP_974443.4| AP3-complex subunit beta-A [Arabidopsis thaliana] gi|332645870|gb|AEE79391.1| AP3-complex subunit beta-A [Arabidopsis thaliana]

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/805 (57%), Positives = 586/805 (72%), Gaps = 30/805 (3%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct: 129 MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 188

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAAAAF SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct: 189 DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 248

Query: 121 LVKESIMSSLLCIESS-HSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEY 178
           LV+ES+M S+    S+   EKD    ++ L+ ++G  S ++D  LV+LVS+ YI+G  EY
Sbjct: 249 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSDSFDVNLVSLVSKCYIQGPDEY 308

Query: 179 LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
           L+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P 
Sbjct: 309 LSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAPL 368

Query: 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALK 298
           EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA K
Sbjct: 369 EDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYK 428

Query: 299 LEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358
           LE+LS I T SSI+S+ +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLAL
Sbjct: 429 LEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLAL 488

Query: 359 IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVM 418
           +RQE    D ES +GEA VL+Q+++SI+++I++DP  HEKV+IQLFRSLDSIKV  AR  
Sbjct: 489 VRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARAT 548

Query: 419 IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 478
           IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   +
Sbjct: 549 IIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHML 608

Query: 479 TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVECI 537
            R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE +
Sbjct: 609 KRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEHV 666

Query: 538 FRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTA 597
           F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+   
Sbjct: 667 FGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDKQRE 725

Query: 598 LGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDS---ASEGDRNCD 654
              +  GS        ++S + DE   S+YDS+ S    SD S  GD    +++ +    
Sbjct: 726 AAADLDGSE-------ESSETGDENGSSDYDSESS--NGSDFSSEGDERTVSNDANDPAA 776

Query: 655 PLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSS 714
           PLIQIS+  ++             D E + S+RAL+ WLD+QP +S+ + S     + S 
Sbjct: 777 PLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQTPSALNSNQSSY 824

Query: 715 ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETM 774
           A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP  VC+E  FEN S+E +
Sbjct: 825 AKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPI 884

Query: 775 SEVTLVDEESHKALDLADLTLATTA 799
            EV L DEES K  D ++ TL   A
Sbjct: 885 LEVNLEDEESMKVADSSEQTLVGKA 909

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410287|ref|NP_567022.1| AP3-complex subunit beta-A [Arabidopsis thaliana] gi|306531058|sp|Q9M2T1.2|AP3BA_ARATH RecName: Full=AP3-complex subunit beta-A; AltName: Full=Adapter-related protein complex 3 subunit beta-A; AltName: Full=Adaptor protein complex AP-3 subunit beta-A; AltName: Full=Beta-3B-adaptin; AltName: Full=Clathrin assembly protein complex 3 beta-A large chain gi|332645869|gb|AEE79390.1| AP3-complex subunit beta-A [Arabidopsis thaliana]

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/805 (57%), Positives = 586/805 (72%), Gaps = 30/805 (3%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct: 1   MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 60

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAAAAF SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct: 61  DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 120

Query: 121 LVKESIMSSLLCIESS-HSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEY 178
           LV+ES+M S+    S+   EKD    ++ L+ ++G  S ++D  LV+LVS+ YI+G  EY
Sbjct: 121 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSDSFDVNLVSLVSKCYIQGPDEY 180

Query: 179 LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
           L+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P 
Sbjct: 181 LSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAPL 240

Query: 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALK 298
           EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA K
Sbjct: 241 EDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYK 300

Query: 299 LEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358
           LE+LS I T SSI+S+ +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLAL
Sbjct: 301 LEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLAL 360

Query: 359 IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVM 418
           +RQE    D ES +GEA VL+Q+++SI+++I++DP  HEKV+IQLFRSLDSIKV  AR  
Sbjct: 361 VRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARAT 420

Query: 419 IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 478
           IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   +
Sbjct: 421 IIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHML 480

Query: 479 TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVECI 537
            R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE +
Sbjct: 481 KRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEHV 538

Query: 538 FRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTA 597
           F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+   
Sbjct: 539 FGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDKQRE 597

Query: 598 LGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDS---ASEGDRNCD 654
              +  GS        ++S + DE   S+YDS+ S    SD S  GD    +++ +    
Sbjct: 598 AAADLDGSE-------ESSETGDENGSSDYDSESS--NGSDFSSEGDERTVSNDANDPAA 648

Query: 655 PLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSS 714
           PLIQIS+  ++             D E + S+RAL+ WLD+QP +S+ + S     + S 
Sbjct: 649 PLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQTPSALNSNQSSY 696

Query: 715 ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETM 774
           A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP  VC+E  FEN S+E +
Sbjct: 697 AKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPI 756

Query: 775 SEVTLVDEESHKALDLADLTLATTA 799
            EV L DEES K  D ++ TL   A
Sbjct: 757 LEVNLEDEESMKVADSSEQTLVGKA 781

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7076791|emb|CAB75906.1| adaptor protein/ adaptin-like [Arabidopsis thaliana]

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/805 (57%), Positives = 586/805 (72%), Gaps = 30/805 (3%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct: 116 MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 175

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAAAAF SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct: 176 DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 235

Query: 121 LVKESIMSSLLCIESS-HSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEY 178
           LV+ES+M S+    S+   EKD    ++ L+ ++G  S ++D  LV+LVS+ YI+G  EY
Sbjct: 236 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSDSFDVNLVSLVSKCYIQGPDEY 295

Query: 179 LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
           L+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P 
Sbjct: 296 LSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAPL 355

Query: 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALK 298
           EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA K
Sbjct: 356 EDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYK 415

Query: 299 LEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358
           LE+LS I T SSI+S+ +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLAL
Sbjct: 416 LEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLAL 475

Query: 359 IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVM 418
           +RQE    D ES +GEA VL+Q+++SI+++I++DP  HEKV+IQLFRSLDSIKV  AR  
Sbjct: 476 VRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARAT 535

Query: 419 IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 478
           IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   +
Sbjct: 536 IIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHML 595

Query: 479 TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVECI 537
            R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE +
Sbjct: 596 KRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEHV 653

Query: 538 FRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTA 597
           F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+   
Sbjct: 654 FGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDKQRE 712

Query: 598 LGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDS---ASEGDRNCD 654
              +  GS        ++S + DE   S+YDS+ S    SD S  GD    +++ +    
Sbjct: 713 AAADLDGSE-------ESSETGDENGSSDYDSESS--NGSDFSSEGDERTVSNDANDPAA 763

Query: 655 PLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSS 714
           PLIQIS+  ++             D E + S+RAL+ WLD+QP +S+ + S     + S 
Sbjct: 764 PLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQTPSALNSNQSSY 811

Query: 715 ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETM 774
           A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP  VC+E  FEN S+E +
Sbjct: 812 AKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPI 871

Query: 775 SEVTLVDEESHKALDLADLTLATTA 799
            EV L DEES K  D ++ TL   A
Sbjct: 872 LEVNLEDEESMKVADSSEQTLVGKA 896

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	800
TAIR|locus:2099961	1115	PAT2 "protein affected traf	0.955	0.685	0.527	1.8e-190
FB|FBgn0003210	1178	rb "ruby" [Drosophila melanoga	0.542	0.368	0.329	5e-60
MGI|MGI:1333879	1105	Ap3b1 "adaptor-related protein	0.697	0.504	0.275	1.5e-57
DICTYBASE|DDB_G0274003	1108	ap3b-2 "beta adaptin" [Dictyos	0.207	0.149	0.347	2.7e-54
DICTYBASE|DDB_G0272578	1108	ap3b-1 "beta adaptin" [Dictyos	0.207	0.149	0.347	2.7e-54
UNIPROTKB|E5RJ68	1045	AP3B1 "AP-3 complex subunit be	0.35	0.267	0.316	4.6e-53
UNIPROTKB|O00203	1094	AP3B1 "AP-3 complex subunit be	0.35	0.255	0.316	6e-53
UNIPROTKB|E1BW97	1100	AP3B1 "Uncharacterized protein	0.312	0.227	0.333	1.3e-52
UNIPROTKB|F1PVY2	1090	AP3B1 "AP-3 complex subunit be	0.312	0.229	0.333	2.2e-52
UNIPROTKB|Q7YRF1	1091	AP3B1 "AP-3 complex subunit be	0.312	0.229	0.329	1.1e-51

TAIR|locus:2099961 PAT2 "protein affected trafficking 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1846 (654.9 bits), Expect = 1.8e-190, P = 1.8e-190
 Identities = 419/794 (52%), Positives = 517/794 (65%)

Query:     1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
             MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct:   129 MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 188

Query:    61 DRSPGVVGXXXXXXXSICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
             D SPGVVG       SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct:   189 DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 248

Query:   121 LVKESIMSSLLCIESS-HSEKDVF--DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE 177
             LV+ES+M S+    S+   EKD    D+ +  ED G  S ++D  LV+LVS+ YI+G  E
Sbjct:   249 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGG-KSDSFDVNLVSLVSKCYIQGPDE 307

Query:   178 YLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237
             YL+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P
Sbjct:   308 YLSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAP 367

Query:   238 KEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKAL 297
              EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA 
Sbjct:   368 LEDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAY 427

Query:   298 KXXXXXXXXXXXXXXXXFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLA 357
             K                 +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLA
Sbjct:   428 KLEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLA 487

Query:   358 LIRQELLTSDIESGNGEADVLXXXXXXXXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARV 417
             L+RQE    D ES +GEA VL             DP  HEKV+IQLFRSLDSIKV  AR 
Sbjct:   488 LVRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARA 547

Query:   418 MIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWT 477
              IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   
Sbjct:   548 TIIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHM 607

Query:   478 ITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVEC 536
             + R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE 
Sbjct:   608 LKRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEH 665

Query:   537 IFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTT 596
             +F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+  
Sbjct:   666 VFGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDK-- 722

Query:   597 ALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSAS-EGDRN--C 653
                +    +  +G+++   +G  DE   S+YDS+ S  G SD S  GD  +   D N   
Sbjct:   723 ---QREAAADLDGSEESSETG--DENGSSDYDSESS-NG-SDFSSEGDERTVSNDANDPA 775

Query:   654 DPLIQISDAGIACSNENGASHSGFPDL---EGMMSKRALESWLDEQPGSSSPSASEQIQV 710
              PLIQIS+  ++   E   S     DL   +   +     S L+    S +  +   +  
Sbjct:   776 APLIQISETSVSADQEELRSRRAL-DLWLDDQPSTSNQTPSALNSNQSSYAKISIGDVGS 834

Query:   711 R---QSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQL-VCLETFF 766
             R   +S + +  GN G  +K     L + +N + L V      E S+  P L V LE   
Sbjct:   835 RVKPKSYSLVDPGN-GSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPILEVNLEDE- 892

Query:   767 ENCSSETMSEVTLV 780
             E+      SE TLV
Sbjct:   893 ESMKVADSSEQTLV 906

GO:0005634 "nucleus" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0080171 "lytic vacuole organization" evidence=IMP

GO:0006896 "Golgi to vacuole transport" evidence=IMP

GO:0051453 "regulation of intracellular pH" evidence=IMP

FB|FBgn0003210 rb "ruby" [Drosophila melanogaster (taxid:7227)]

 Score = 581 (209.6 bits), Expect = 5.0e-60, Sum P(2) = 5.0e-60
 Identities = 157/476 (32%), Positives = 241/476 (50%)

Query:     1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEEITSAIEEIVGI 57
             ++ IR+ +I P+V++A+   A D S +VRK AA+A+PKL+ L   +++E+   IE+    
Sbjct:   140 LSSIRVSMIVPIVMLAIRDSAADLSPYVRKTAAHAIPKLYSLDADQKDELVMVIEK---- 195

Query:    58 LLNDRSPGVVGXXXXXXXSICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVA 117
             LL+DR+  VVG        +CP    LI +NYR LC  L DV+EWGQ+++I +L RY   
Sbjct:   196 LLSDRTTLVVGSAVMAFDEVCPERVDLIHKNYRKLCNFLLDVDEWGQVIIINMLTRYART 255

Query:   118 SHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE 177
                            ++ +  ++D+  VN  L +  +  R YD E  +  S S      +
Sbjct:   256 QF-------------VDPNADDEDL--VNDGLGETPVSERFYD-ESSHSSSHSDDGSSDD 299

Query:   178 YLTRSSDTNARSSDLNGARFTSGKTND---DV--KLLLQCTSPLLWSHNSAVVLAAAGVH 232
                +SS  N  +   NG+R  S  +N    DV  +LLL+ T PLL S N++VV+A A ++
Sbjct:   300 EKNKSSTNNKNNGGGNGSRTPSSPSNSYHIDVDHRLLLRQTKPLLQSRNASVVMAVAQLY 359

Query:   233 WIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSY 292
               ++PK +V+ I K L+ +LRS    + VVL  I   +     +F PH + FFV +SD  
Sbjct:   360 HHVAPKNEVQLIAKALIRLLRSHKEVQSVVLNCIASMSTKRKAIFEPHLKSFFVRTSDPT 419

Query:   293 QSKALKXXXXXXXXXXXXXXXXFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCV 352
               K LK                 +EFQ YI   DR F A T+ AIG CA  + ++  TC+
Sbjct:   420 HIKLLKLDILTNLASAGSISLILREFQTYISSSDRSFVAATIQAIGRCASSIKEVTETCL 479

Query:   353 EGLLALIRQELLTSDIESGNGEADVLXXXXXXXXXXXXXDPSCHEKVIIQLFRSLDSIKV 412
              GL+ L+            N +  V+               + H ++I Q+ + +D I V
Sbjct:   480 SGLVHLL-----------SNHDEHVVAESVVVIKRLLQTKAAEHFEIITQMAKLIDYINV 528

Query:   413 PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL 468
             P AR  IIW++GEY+    K+P +   VL+ +A  F  E    KLQ+LN  +K+ L
Sbjct:   529 PAARAAIIWLIGEYNE---KVPLIAPDVLRKMAKSFVDEQDVVKLQVLNLGVKLYL 581

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0030135 "coated vesicle" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0016183 "synaptic vesicle coating" evidence=TAS

GO:0006901 "vesicle coating" evidence=TAS

GO:0008057 "eye pigment granule organization" evidence=NAS

GO:0006726 "eye pigment biosynthetic process" evidence=TAS

GO:0007040 "lysosome organization" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0030123 "AP-3 adaptor complex" evidence=ISS

GO:0046907 "intracellular transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0007220 "Notch receptor processing" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0060967 "negative regulation of gene silencing by RNA" evidence=IMP

MGI|MGI:1333879 Ap3b1 "adaptor-related protein complex 3, beta 1 subunit" [Mus musculus (taxid:10090)]

 Score = 439 (159.6 bits), Expect = 1.5e-57, Sum P(2) = 1.5e-57
 Identities = 174/631 (27%), Positives = 282/631 (44%)

Query:   195 ARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS 254
             +R  S   + D +LL++ T PLL S N+AVV+A A ++W +SPK +   I K L+ +LRS
Sbjct:   287 SRKKSYAMDPDHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSEAGVISKSLVRLLRS 346

Query:   255 SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXX 314
             +   +Y+VL NI   +     +F P+ + F+V S+D    K LK                
Sbjct:   347 NREVQYIVLQNIATMSIERKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTL 406

Query:   315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGE 374
              +EFQ Y+R  D++FAA T+  IG CA  + ++ +TC+ GL+ L+            N +
Sbjct:   407 LREFQTYVRSQDKQFAAATIQTIGRCATSISEVTDTCLNGLVCLL-----------SNRD 455

Query:   375 ADVLXXXXXXXXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIP 434
               V+              P+ H ++I  + + LDSI VP AR  I+W++GE      ++P
Sbjct:   456 EIVVAESVVVIKKLLQMQPAQHGEIIRHMAKLLDSITVPVARASILWLIGENCE---RVP 512

Query:   435 RMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFS-YLLELAECDL 493
             ++   VL+ +A  F SE    KLQILN   K+ L          T+L + Y+L L + D 
Sbjct:   513 KIAPDVLRKMAKSFTSEDDLVKLQILNLAAKLYLTNSKQ-----TKLLTQYILNLGKYDQ 567

Query:   494 NYDVRDRARFFKKLFSHNLCSQVPEETNALQEN-KDL-----PLVLVECIFRKQENL--- 544
             NYD+RDR RF ++L   N      E++ AL +  K +     P  L+E  F+ ++     
Sbjct:   568 NYDIRDRTRFIRQLIVPN------EKSGALSKYAKKIFLAPKPAPLLESPFKDRDRFQLG 621

Query:   545 AASEPINDRF--YL---------PG-SLSQI-VLHAAPGYEPLPKPCSSLCDDLGQFSNS 591
               S  +N +   YL         P  S+  + V+ +A  + PL K        + +F + 
Sbjct:   622 TLSHTLNIKASGYLELSNWPEVAPDPSVRNVEVIESAKEWTPLGKTKKE--KPMKKFYSE 679

Query:   592 IDRTTALGEEWTGSSSNGTDDPD--TSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEG 649
              +      E+         D+ +  +  S D ESGS  +S  +  G  D+S   DS+S  
Sbjct:   680 SEEEEDEDEDEDEEEEEKEDEDENPSDSSSDSESGSGSESGDT--GTEDSSE--DSSSGQ 735

Query:   650 DRNCDPLIQISDAGIACSNENGASHSGFPDLEGMM-SKRALESWLDEQPGSSSPSASEQI 708
             D       +     +A  N      S   + E    + +A ES   E+  S   S+SE  
Sbjct:   736 DSETGSQAEAERQKVAKRNSKTKRKSDSENREKKNENSKASES-SSEESSSMEDSSSESE 794

Query:   709 QVRQSSARISIGNIG----------RQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQ 758
                 S +  +  N+           R   +K   LLD  + N +    +  + A  +SP 
Sbjct:   795 SESGSDSEPAPRNVAPAKERKPQQERHPPSKDVFLLDLDDFNPVSTPVALPTPA--LSPS 852

Query:   759 LVC-LETFFENCSSETMSEVT--LVDEESHK 786
             L+  LE    + SS  ++  T   V  ++H+
Sbjct:   853 LIADLEGLNLSTSSSVINVSTPVFVPTKTHE 883

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=TAS

GO:0006622 "protein targeting to lysosome" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006829 "zinc ion transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0006897 "endocytosis" evidence=IEA

GO:0007596 "blood coagulation" evidence=IMP

GO:0008089 "anterograde axon cargo transport" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0019882 "antigen processing and presentation" evidence=IMP

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0030117 "membrane coat" evidence=IEA

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0032438 "melanosome organization" evidence=ISO

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IMP

GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IMP

DICTYBASE|DDB_G0274003 ap3b-2 "beta adaptin" [Dictyostelium discoideum (taxid:44689)]

 Score = 281 (104.0 bits), Expect = 2.7e-54, Sum P(4) = 2.7e-54
 Identities = 58/167 (34%), Positives = 94/167 (56%)

Query:   197 FTSGKTND-DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSS 255
             F S +  D D +LLL+ T PLL S N+AVV+A + +++  +P  + +++ K L+ ILRS 
Sbjct:   284 FDSSEEIDMDHRLLLKSTLPLLQSRNNAVVMAVSSLYFYCAPSIEAQKVGKSLVRILRSG 343

Query:   256 GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXF 315
                +Y+ L NI       P +F PH  +FF+ SSD   S  LK                 
Sbjct:   344 PEVQYITLTNISTMVTLRPSMFEPHLSEFFIHSSDPEYSIKLKLEILTRLATPENIGKIL 403

Query:   316 KEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQE 362
             KEF++Y+++ D++F A T+ AIG CA  +P +  +C+ GL++L+  +
Sbjct:   404 KEFKEYVKNEDKKFVAATIQAIGSCASTVPDVTESCIYGLMSLLSNQ 450

GO:0030123 "AP-3 adaptor complex" evidence=IEA;IDA

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0272578 ap3b-1 "beta adaptin" [Dictyostelium discoideum (taxid:44689)]

 Score = 281 (104.0 bits), Expect = 2.7e-54, Sum P(4) = 2.7e-54
 Identities = 58/167 (34%), Positives = 94/167 (56%)

Query:   197 FTSGKTND-DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSS 255
             F S +  D D +LLL+ T PLL S N+AVV+A + +++  +P  + +++ K L+ ILRS 
Sbjct:   284 FDSSEEIDMDHRLLLKSTLPLLQSRNNAVVMAVSSLYFYCAPSIEAQKVGKSLVRILRSG 343

Query:   256 GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXF 315
                +Y+ L NI       P +F PH  +FF+ SSD   S  LK                 
Sbjct:   344 PEVQYITLTNISTMVTLRPSMFEPHLSEFFIHSSDPEYSIKLKLEILTRLATPENIGKIL 403

Query:   316 KEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQE 362
             KEF++Y+++ D++F A T+ AIG CA  +P +  +C+ GL++L+  +
Sbjct:   404 KEFKEYVKNEDKKFVAATIQAIGSCASTVPDVTESCIYGLMSLLSNQ 450

GO:0030123 "AP-3 adaptor complex" evidence=IEA;IDA

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E5RJ68 AP3B1 "AP-3 complex subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 372 (136.0 bits), Expect = 4.6e-53, Sum P(3) = 4.6e-53
 Identities = 94/297 (31%), Positives = 149/297 (50%)

Query:   172 IEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV 231
             +E  G+    S D     +D     +T    + D +LL++ T PLL S N+AVV+A A +
Sbjct:   217 LEDNGKNFYESDDDQKEKTDKKKKPYTM---DPDHRLLIRNTKPLLQSRNAAVVMAVAQL 273

Query:   232 HWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS 291
             +W +SPK +   I K L+ +LRS+   +Y+VL NI   +     +F P+ + F+V S+D 
Sbjct:   274 YWHISPKSEAGIISKSLVRLLRSNREVQYIVLQNIATMSIQRKGMFEPYLKSFYVRSTDP 333

Query:   292 YQSKALKXXXXXXXXXXXXXXXXFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC 351
                K LK                 +EFQ Y++  D++FAA T+  IG CA  + ++ +TC
Sbjct:   334 TMIKTLKLEILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATNILEVTDTC 393

Query:   352 VEGLLALIRQELLTSDIESGNGEADVLXXXXXXXXXXXXXDPSCHEKVIIQLFRSLDSIK 411
             + GL+ L+            N +  V+              P+ H ++I  + + LDSI 
Sbjct:   394 LNGLVCLL-----------SNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKLLDSIT 442

Query:   412 VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL 468
             VP AR  I+W++GE      ++P++   VL+ +A  F SE    KLQILN   K+ L
Sbjct:   443 VPVARASILWLIGENCE---RVPKIAPDVLRKMAKSFTSEDDLVKLQILNLGAKLYL 496

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

UNIPROTKB|O00203 AP3B1 "AP-3 complex subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 372 (136.0 bits), Expect = 6.0e-53, Sum P(3) = 6.0e-53
 Identities = 94/297 (31%), Positives = 149/297 (50%)

Query:   172 IEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV 231
             +E  G+    S D     +D     +T    + D +LL++ T PLL S N+AVV+A A +
Sbjct:   266 LEDNGKNFYESDDDQKEKTDKKKKPYTM---DPDHRLLIRNTKPLLQSRNAAVVMAVAQL 322

Query:   232 HWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS 291
             +W +SPK +   I K L+ +LRS+   +Y+VL NI   +     +F P+ + F+V S+D 
Sbjct:   323 YWHISPKSEAGIISKSLVRLLRSNREVQYIVLQNIATMSIQRKGMFEPYLKSFYVRSTDP 382

Query:   292 YQSKALKXXXXXXXXXXXXXXXXFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC 351
                K LK                 +EFQ Y++  D++FAA T+  IG CA  + ++ +TC
Sbjct:   383 TMIKTLKLEILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATNILEVTDTC 442

Query:   352 VEGLLALIRQELLTSDIESGNGEADVLXXXXXXXXXXXXXDPSCHEKVIIQLFRSLDSIK 411
             + GL+ L+            N +  V+              P+ H ++I  + + LDSI 
Sbjct:   443 LNGLVCLL-----------SNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKLLDSIT 491

Query:   412 VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL 468
             VP AR  I+W++GE      ++P++   VL+ +A  F SE    KLQILN   K+ L
Sbjct:   492 VPVARASILWLIGENCE---RVPKIAPDVLRKMAKSFTSEDDLVKLQILNLGAKLYL 545

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030665 "clathrin-coated vesicle membrane" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0032438 "melanosome organization" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

UNIPROTKB|E1BW97 AP3B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 371 (135.7 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
 Identities = 88/264 (33%), Positives = 139/264 (52%)

Query:   205 DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLC 264
             D +LLL+ T PLL S N+AVV+A A ++W ++PK +   I K L+ +LRS+   +Y+VL 
Sbjct:   299 DHRLLLRNTKPLLQSRNAAVVMAVAQLYWHLAPKSEAGIISKSLVRLLRSNREVQYIVLQ 358

Query:   265 NIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXFKEFQDYIRD 324
             NI   +     +F P+ + F+V S+D    K LK                 +EFQ Y++ 
Sbjct:   359 NIATMSIQRKGMFEPYLKSFYVRSTDPTMIKTLKLEIMTNLANEANISTLLREFQTYVKS 418

Query:   325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLXXXXXX 384
              D++FAA T+ AIG CA  + ++ +TC+ GL+ L+            N +  V+      
Sbjct:   419 QDKQFAAATIQAIGRCATNISEVTDTCLNGLVCLL-----------SNRDEIVVAESVVV 467

Query:   385 XXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYL 444
                     P+ H ++I  + + LD+I VP AR  I+W++GEY     ++P++   VL+  
Sbjct:   468 IKKLLQTQPAHHGEIIKHMAKLLDNITVPVARASILWLIGEYCE---RVPKIAPDVLRKT 524

Query:   445 AWCFKSEAVETKLQILNTTIKVLL 468
             A  F +E    KLQILN   K+ L
Sbjct:   525 AKSFTNEDDLVKLQILNLGAKLYL 548

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0032438 "melanosome organization" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

UNIPROTKB|F1PVY2 AP3B1 "AP-3 complex subunit beta-1" [Canis lupus familiaris (taxid:9615)]

 Score = 366 (133.9 bits), Expect = 2.2e-52, Sum P(3) = 2.2e-52
 Identities = 88/264 (33%), Positives = 139/264 (52%)

Query:   205 DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLC 264
             D +LL++ T PLL S N+AVV+A A ++W +SPK +V  I K L+ +LRS+   +Y+VL 
Sbjct:   296 DHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSEVGIISKSLVRLLRSNREVQYIVLQ 355

Query:   265 NIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXFKEFQDYIRD 324
             NI   +     +F P+ + F+V S+D    K LK                 +EFQ Y++ 
Sbjct:   356 NIATMSIQRKGMFEPYLKSFYVRSTDPTMIKILKLEILTNLANEANISTLLREFQTYVKS 415

Query:   325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLXXXXXX 384
              D++FAA T+  IG CA  + ++ +TC+ GL+ L+            N +  V+      
Sbjct:   416 QDKQFAAATIQTIGRCATNISEVTDTCLSGLVCLL-----------SNRDEIVVAESVVV 464

Query:   385 XXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYL 444
                     P+ H ++I  + + LDSI VP AR  I+W++GE      ++P++   VL+ +
Sbjct:   465 IKKLLQMQPAQHGEIIKHMAKLLDSITVPVARASILWLIGENCE---RVPKIAPDVLRKM 521

Query:   445 AWCFKSEAVETKLQILNTTIKVLL 468
             A  F +E    KLQILN   K+ L
Sbjct:   522 AKSFTNEDDLVKLQILNLGAKLYL 545

GO:0051138 "positive regulation of NK T cell differentiation" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0048007 "antigen processing and presentation, exogenous lipid antigen via MHC class Ib" evidence=IEA

GO:0032438 "melanosome organization" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0030123 "AP-3 adaptor complex" evidence=IEA

UNIPROTKB|Q7YRF1 AP3B1 "AP-3 complex subunit beta-1" [Canis lupus familiaris (taxid:9615)]

 Score = 360 (131.8 bits), Expect = 1.1e-51, Sum P(3) = 1.1e-51
 Identities = 87/264 (32%), Positives = 138/264 (52%)

Query:   205 DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLC 264
             D +LL++ T PLL S N+AVV+A A ++W +SPK +V  I K L+ +LRS+   +Y+VL 
Sbjct:   296 DHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSEVGIISKSLVRLLRSNREVQYIVLQ 355

Query:   265 NIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXFKEFQDYIRD 324
             NI   +     +  P+ + F+V S+D    K LK                 +EFQ Y++ 
Sbjct:   356 NIATMSIQRKGMLEPYLKSFYVRSTDPTMIKILKLEILTNLANEANISTLLREFQTYVKS 415

Query:   325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLXXXXXX 384
              D++FAA T+  IG CA  + ++ +TC+ GL+ L+            N +  V+      
Sbjct:   416 QDKQFAAATIQTIGRCATSISEVTDTCLSGLVCLL-----------SNRDEIVVAESVVV 464

Query:   385 XXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYL 444
                     P+ H ++I  + + LDSI VP AR  I+W++GE      ++P++   VL+ +
Sbjct:   465 IKKLLQMQPAQHGEIIKHMAKLLDSITVPVARASILWLIGENCE---RVPKIAPDVLRKM 521

Query:   445 AWCFKSEAVETKLQILNTTIKVLL 468
             A  F +E    KLQILN   K+ L
Sbjct:   522 AKSFTNEDDLVKLQILNLGAKLYL 545

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0030665 "clathrin-coated vesicle membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	800
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	3e-42
PTZ00429	746	PTZ00429, PTZ00429, beta-adaptin; Provisional	1e-16
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	1e-14
COG5096	757	COG5096, COG5096, Vesicle coat complex, various su	6e-12
COG5096	757	COG5096, COG5096, Vesicle coat complex, various su	3e-06
PTZ00429	746	PTZ00429, PTZ00429, beta-adaptin; Provisional	4e-05

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score =  161 bits (410), Expect = 3e-42
 Identities = 79/309 (25%), Positives = 134/309 (43%), Gaps = 21/309 (6%)

Query: 207 KLLLQCTSPLLWSHNSAVVLAAAGV-HWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLC 264
           K LL+    LL + N+AV+  A      +    E +   V  L   +       +YV L 
Sbjct: 228 KELLEDILNLLQNSNNAVLYEAVKTIIHLDPEPELIVLAVNALGRLLSSPDENLRYVALR 287

Query: 265 NIQVFAKALPH-LFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIR 323
           N+    +  P  +       F + + D    +   L++L  +V ES++  + KE   Y+ 
Sbjct: 288 NLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVS 347

Query: 324 D-PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSI 382
           +  D  F    V AIG  A K P  A  C++ LL     ELL+        E       +
Sbjct: 348 EIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLL-----ELLSLAGSYVVDEI------V 396

Query: 383 ISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 442
             I+ II++ P   E ++  L   L+ I+ PEAR   +W++GEY  +   IP   + +L+
Sbjct: 397 EVIRDIIRKYPELREYILEHLCELLEDIESPEARAAALWILGEYGEL---IPNSPSDLLR 453

Query: 443 YLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELA-ECDLNYDVRDRA 501
            +   F  E+++ +L +L   +K  L     D      +   +L LA +   + ++RDRA
Sbjct: 454 SILEVFVLESLKVRLALLTALVK--LSLTFPDEEVQNLIVQVVLSLATQDSSDLELRDRA 511

Query: 502 RFFKKLFSH 510
             + +L S 
Sbjct: 512 VEYLRLLSL 520

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional

 Score = 83.8 bits (207), Expect = 1e-16
 Identities = 77/307 (25%), Positives = 131/307 (42%), Gaps = 36/307 (11%)

Query: 215 PLLWSHNSAVVLAAAGVHWIMSPK-------EDVKRIVKPLLFILRSSGASKYVVLCNIQ 267
           P +   N AVV+ A  V   ++ +           R+   LL + R    ++Y+V  NI 
Sbjct: 263 PRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIH 322

Query: 268 VFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDR 327
                 P+L   + + F+V  SD    K  KL +L  +VT S    + KE  +Y    D 
Sbjct: 323 ALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDM 382

Query: 328 RFAADTVAAIGLCARKLPKMANTCVEGLLALI--RQELLTSDIESGNGEADVLIQSIISI 385
            F  + V AI   A K+  +A  C   LL ++  R ELL               Q + + 
Sbjct: 383 VFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLP--------------QVVTAA 428

Query: 386 KSIIKQDPSCHEKVIIQLFRS---LDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 442
           K I+++ P   E +++    +    D +   EA+V ++WM+GEY      I      + +
Sbjct: 429 KDIVRKYP---ELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF---IENGKDIIQR 482

Query: 443 YLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRAR 502
           ++    + E    +L IL+  +K+ L    G    + R+   +   ++   + DVRDRA 
Sbjct: 483 FIDTIMEHEQ-RVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSD---DPDVRDRAF 538

Query: 503 FFKKLFS 509
            + +L S
Sbjct: 539 AYWRLLS 545

Length = 746

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 77.3 bits (191), Expect = 1e-14
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 9   ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVG 68
           ++  +   + K   D   +VRK AA A+ KL+    + +   +   +  LL+D+ PGVV 
Sbjct: 110 LARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRDFLVPELKELLSDKDPGVVS 169

Query: 69  AAAAAFASICPNN----FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKE 124
           AA A    I  N+      L+    R LC +L     W Q+ ++ +L RY         +
Sbjct: 170 AAVALLYEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQVKILRLLTRY-APQDPREPK 228

Query: 125 SIMSSLL-CIESSH 137
            ++  +L  +++S+
Sbjct: 229 ELLEDILNLLQNSN 242

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

 Score = 69.0 bits (169), Expect = 6e-12
 Identities = 83/354 (23%), Positives = 149/354 (42%), Gaps = 42/354 (11%)

Query: 201 KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDV---KRIVKPLLFILRSSGA 257
            T D  +   +  SP L  +N+ V+L A  V   +           I  P L  L +   
Sbjct: 238 TTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPE 297

Query: 258 S--KYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVF 315
           S  +YV+  NIQ+  +    L     + F +  +D    K  KL+ L+ +  + ++S + 
Sbjct: 298 SLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQIL 357

Query: 316 KEFQDYIRDP--DRRFAADTVAAIGLCARKLPKMANTCVEGLLAL-----IRQELLTSDI 368
            E   YI +   D    ++ + A+G  A K     N C+  LL L     IR   +  ++
Sbjct: 358 LELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEV 417

Query: 369 ESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKV-PEAR-----VMIIWM 422
                   V+  S++ ++ +  + P    + +  L  +L+     P A+      +  W+
Sbjct: 418 RI-VDCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWL 476

Query: 423 VGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL--------CAKGGD 474
           +GE+S +   IPR+   +L+     F  E +E +  IL +++K++         C    D
Sbjct: 477 LGEFSDI---IPRLEPELLRIAISNFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELD 533

Query: 475 MWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNA-LQENK 527
              + R F Y+L         D+RDRAR + +L S    + +PE ++  L E K
Sbjct: 534 QDVLRRCFDYVLVP-------DLRDRARMYSRLLS----TPLPEFSDPILCEAK 576

Length = 757

>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

 Score = 50.9 bits (122), Expect = 3e-06
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGILL 59
           ++ +R+  +   ++  + K   DP  +VRK AA A+ KL+ L ++      + +I+  L+
Sbjct: 116 LSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELV 175

Query: 60  NDRSPGVVGAAAAAFASICPNNFT-LIGRNYRNLCQILP----DVEEWGQILLIEILLRY 114
            D  P V+  A A+ A I P             + Q+         EW  ++++E+L   
Sbjct: 176 ADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTER 235

Query: 115 VVASHG 120
           V  +  
Sbjct: 236 VPTTPD 241

Length = 757

>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKL-HELRQEEITSAIEEIVGILL 59
           M  IR+  +    L  + +   DP  +VRK AA  L KL H+  Q       ++ +  LL
Sbjct: 129 MMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELL 188

Query: 60  NDRSPGVVGAAAAAFASICPNNFTLI--GRNYRN-LCQILPDVEEWGQILLIEIL 111
           ND +P V   AAA    +       I     + N L   LP+  EWGQ+ ++E+L
Sbjct: 189 NDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELL 243

Length = 746

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	800
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	100.0
PTZ00429	746	beta-adaptin; Provisional	100.0
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	100.0
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	100.0
COG5096	757	Vesicle coat complex, various subunits [Intracellu	100.0
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	100.0
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	100.0
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	99.96
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.95
PF14796	145	AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit	99.84
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.83
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.81
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.84
PTZ00429	746	beta-adaptin; Provisional	98.27
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.22
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.2
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.18
PRK09687	280	putative lyase; Provisional	98.07
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.79
PRK09687	280	putative lyase; Provisional	97.77
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.39
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.34
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.3
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.19
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	97.17
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	97.16
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.0
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.91
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	96.82
PF14764	459	SPG48: AP-5 complex subunit, vesicle trafficking	96.81
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	96.8
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.67
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.64
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.61
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.54
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.5
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.29
KOG0413	1529	consensus Uncharacterized conserved protein relate	96.29
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.21
PF05804	708	KAP: Kinesin-associated protein (KAP)	96.0
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.98
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	95.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	95.79
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.78
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.73
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	95.65
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.26
TIGR02270	410	conserved hypothetical protein. Members are found	95.2
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.06
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.93
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.86
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.8
KOG0212	675	consensus Uncharacterized conserved protein [Funct	94.73
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	94.65
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	94.63
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.39
KOG1242	569	consensus Protein containing adaptin N-terminal re	94.32
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.28
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.23
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	94.1
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	93.96
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	93.84
KOG1824	1233	consensus TATA-binding protein-interacting protein	93.52
TIGR02270	410	conserved hypothetical protein. Members are found	93.12
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	92.83
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	92.48
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	92.47
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	91.62
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	91.36
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	89.73
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	89.66
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	89.47
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	89.24
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	88.97
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	88.21
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	87.48
COG1413	335	FOG: HEAT repeat [Energy production and conversion	87.46
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	87.28
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	86.65
PF02854	209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	86.56
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	86.43
COG5098	1128	Chromosome condensation complex Condensin, subunit	84.97
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	84.05
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	84.04
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	83.68
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	83.65
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	83.56
COG1413	335	FOG: HEAT repeat [Energy production and conversion	82.99
smart00809	104	Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin	82.89
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	82.38
KOG1242	569	consensus Protein containing adaptin N-terminal re	81.83
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	81.2
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	81.16
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	81.02
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	80.89

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-127  Score=1080.04  Aligned_cols=497  Identities=44%  Similarity=0.718  Sum_probs=452.5

Q ss_pred             CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC
Q 003722            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN   80 (800)
Q Consensus         1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~   80 (800)
                      |+|||||+|+||+++|||+|++|++|||||+||+||+|||.++| ++.++|+++|++||+|++|.|+|+|++||.||||+
T Consensus       132 lSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe  210 (968)
T KOG1060|consen  132 LSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE  210 (968)
T ss_pred             HHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence            79999999999999999999999999999999999999999999 77779999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcc
Q 003722           81 NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD  160 (800)
Q Consensus        81 ~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  160 (800)
                      +++||||||||||++|+|+|||||+++|++|+||||  ++|++|..|-..                  +++.+.     +
T Consensus       211 rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR--~~l~~P~~~~~~------------------~e~n~~-----~  265 (968)
T KOG1060|consen  211 RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR--HQLPDPTVVDSS------------------LEDNGR-----S  265 (968)
T ss_pred             HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH--hcCCCccccccc------------------cccCcc-----c
Confidence            999999999999999999999999999999999985  789999743221                  111110     0


Q ss_pred             hhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH
Q 003722          161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED  240 (800)
Q Consensus       161 ~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~  240 (800)
                      ...           ++.+              + .....+..|+||++||+++.|||||+|++||||||++|||++|+.+
T Consensus       266 ~~~-----------~~~~--------------~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~  319 (968)
T KOG1060|consen  266 CNL-----------KDKY--------------N-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ  319 (968)
T ss_pred             ccc-----------cccc--------------c-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence            000           0000              0 0112356899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 003722          241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQD  320 (800)
Q Consensus       241 l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~  320 (800)
                      ...+++||+|||++++++||++|++|..|+...|.+|.||++.||++.+||..||.+||+||+.|+|+.|+..|++||++
T Consensus       320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~  399 (968)
T KOG1060|consen  320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT  399 (968)
T ss_pred             HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHH
Q 003722          321 YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVI  400 (800)
Q Consensus       321 Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i  400 (800)
                      |+++.|.+|+..+|+|||+||.+.-.+.++||+||+.||++.           +..||.|+|++||.+||++|..|.+++
T Consensus       400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llssh-----------de~Vv~eaV~vIk~Llq~~p~~h~~ii  468 (968)
T KOG1060|consen  400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSH-----------DELVVAEAVVVIKRLLQKDPAEHLEIL  468 (968)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcc-----------cchhHHHHHHHHHHHHhhChHHHHHHH
Confidence            999999999999999999999999999999999999999852           456999999999999999999999999


Q ss_pred             HHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 003722          401 IQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR  480 (800)
Q Consensus       401 ~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~  480 (800)
                      .+|++.++.+..|.|||+|+|++||||.   .+|.++||+||+++|+|.+|..+||+|||++++|||+..+.    .+++
T Consensus       469 ~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~----~~kl  541 (968)
T KOG1060|consen  469 FQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID----QTKL  541 (968)
T ss_pred             HHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh----hHHH
Confidence            9999999999999999999999999996   47999999999999999999999999999999999999876    3788


Q ss_pred             HHHHHHHHHccCCChHHHhHHHHHHHHccCCcCCCCccchhhhhccCCchHHHHHhh-hccCCCCCCCCCcccccccCCc
Q 003722          481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECI-FRKQENLAASEPINDRFYLPGS  559 (800)
Q Consensus       481 L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~l-f~~~~~~~~~~~~~~r~~~lGS  559 (800)
                      ++||||++++||.+||+|||||||+.|+....               .+. ..++.+ |+.||.+..++.+..|+|++||
T Consensus       542 l~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~---------------~Ls-~h~~ei~l~~Kpa~~~es~f~~~~~~~gs  605 (968)
T KOG1060|consen  542 LVQYVFELARYDLSYDIRDRARFLRQLISPLE---------------ALS-KHAREIFLASKPAPVLESSFKDRHYQLGS  605 (968)
T ss_pred             HHHHHHHHhccCCCcchhHHHHHHHHHhccHH---------------HHH-HHHHHHhhccCCCccCcccccCCCcccch
Confidence            99999999999999999999999999997642               222 345555 5677777778888888999999


Q ss_pred             hhHHhhccCCCCccCCCCCCCCCc
Q 003722          560 LSQIVLHAAPGYEPLPKPCSSLCD  583 (800)
Q Consensus       560 LS~~~~~~~~gy~~Lp~~~~~~~~  583 (800)
                      +||+++++++||+|||+|+.+.++
T Consensus       606 lS~lLn~~a~GY~~lp~~~~~~~d  629 (968)
T KOG1060|consen  606 LSLLLNAPAPGYEPLPNWPAVAPD  629 (968)
T ss_pred             HHHHhcCcCcCCccCCCccccCCC
Confidence            999999999999999999999997

>PTZ00429 beta-adaptin; Provisional

Probab=100.00  E-value=8e-81  Score=735.62  Aligned_cols=448  Identities=24%  Similarity=0.350  Sum_probs=388.4

Q ss_pred             CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC-
Q 003722            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC-   78 (800)
Q Consensus         1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc-   78 (800)
                      ||+||+++|+++++.+|++|+.|++|||||+||+|++|+|+++|+. ....|.+.|..||.|+||+|+++|+.+|.+|+ 
T Consensus       129 Ls~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~  208 (746)
T PTZ00429        129 MMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND  208 (746)
T ss_pred             HHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999954 33457778888999999999999999999997 


Q ss_pred             --CCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCC
Q 003722           79 --PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS  156 (800)
Q Consensus        79 --P~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~  156 (800)
                        |+++.++|+++++||+.|.+++||+|+++|++|.+|.|..                                      
T Consensus       209 ~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~--------------------------------------  250 (746)
T PTZ00429        209 YGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD--------------------------------------  250 (746)
T ss_pred             hCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC--------------------------------------
Confidence              6678999999999999999999999999999999997521                                      


Q ss_pred             CCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC
Q 003722          157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS  236 (800)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~  236 (800)
                                                                    +.+...+|+.+.|+|+|.|+||||+|+++++++.
T Consensus       251 ----------------------------------------------~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        251 ----------------------------------------------KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             ----------------------------------------------cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence                                                          1234679999999999999999999999999887


Q ss_pred             C---HH----HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCC
Q 003722          237 P---KE----DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTES  309 (800)
Q Consensus       237 p---~~----~l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~  309 (800)
                      +   ++    .++++..||++|+++++|+||++|++|..|++.+|.+|.+|++.|||+++||.|||.+||+||+.|||++
T Consensus       285 ~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~  364 (746)
T PTZ00429        285 SRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPS  364 (746)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcc
Confidence            5   22    3456788999998889999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHH
Q 003722          310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII  389 (800)
Q Consensus       310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il  389 (800)
                      |+..|++||++|+.+.|.+|++++|+|||+||.|+|..++||+++|++|++..           . .++.|+|+++++|+
T Consensus       365 Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~-----------~-~~v~e~i~vik~Il  432 (746)
T PTZ00429        365 VAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRR-----------P-ELLPQVVTAAKDIV  432 (746)
T ss_pred             cHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCC-----------c-hhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999631           2 25779999999999


Q ss_pred             HhCCcchHHHHHHHHHhh--hccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHH
Q 003722          390 KQDPSCHEKVIIQLFRSL--DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL  467 (800)
Q Consensus       390 ~~~P~~~~~~i~~L~~~l--d~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~  467 (800)
                      |+||+.+  ++..|++.+  +.+.+|+||++++||+||||+.+   +. ++++++.++++|..|+.+||+|+||+++|+|
T Consensus       433 rkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I---~~-a~~~L~~~i~~f~~E~~~VqlqlLta~vKlf  506 (746)
T PTZ00429        433 RKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI---EN-GKDIIQRFIDTIMEHEQRVQLAILSAAVKMF  506 (746)
T ss_pred             HHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH---hh-HHHHHHHHHhhhccCCHHHHHHHHHHHHHHH
Confidence            9999864  678888765  78999999999999999999754   44 6899999999999999999999999999999


Q ss_pred             hhcCCCChHHHHHHHHHHHHHH-ccCCChHHHhHHHHHHHHccCCcCCCCccchhhhhccCCchHHHHHhhhccCCCCCC
Q 003722          468 LCAKGGDMWTITRLFSYLLELA-ECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAA  546 (800)
Q Consensus       468 ~~~p~e~~~~l~~L~q~vl~la-~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~lf~~~~~~~~  546 (800)
                      +++|++.+    .+++++|+.+ +++.||||||||+|||+||+.+..               . ...+++++.++||.+.
T Consensus       507 l~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~---------------~-~~a~~iv~~~~~~i~~  566 (746)
T PTZ00429        507 LRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGIT---------------V-AQMKKVVHGQMVPVNV  566 (746)
T ss_pred             hcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCc---------------H-HHHHHHHcCCCCCCCc
Confidence            99997543    4566677544 577899999999999999987531               0 1244566677777654


Q ss_pred             CCCcccc------cccCCchhHHhhccCCC
Q 003722          547 SEPINDR------FYLPGSLSQIVLHAAPG  570 (800)
Q Consensus       547 ~~~~~~r------~~~lGSLS~~~~~~~~g  570 (800)
                      .+...+.      ...+||||.+.+++..-
T Consensus       567 ~~~~~d~~~l~~L~~~~~tlssvY~kp~~~  596 (746)
T PTZ00429        567 DSTFSDAMTMADLKKSLNTAAIVFARPYQS  596 (746)
T ss_pred             ccccCCHHHHHHHHHhcCceeeeecCCHHH
Confidence            3222211      23478888888776543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-70  Score=621.48  Aligned_cols=445  Identities=29%  Similarity=0.453  Sum_probs=394.7

Q ss_pred             CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC-
Q 003722            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC-   78 (800)
Q Consensus         1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc-   78 (800)
                      |++||++.+.++...++++|++|.+|||||+||.|+.|+|+++++. +...+.+.|..|+.|.+|+|++||+.|+.||. 
T Consensus       110 m~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e  189 (734)
T KOG1061|consen  110 MGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE  189 (734)
T ss_pred             eeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999954 55678889999999999999999999999995 


Q ss_pred             --CC--cccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCC
Q 003722           79 --PN--NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGI  154 (800)
Q Consensus        79 --P~--~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~  154 (800)
                        |+  -+.++|+..+++++.|.+|+||||+.+|+.|++|.+..+                                   
T Consensus       190 ~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-----------------------------------  234 (734)
T KOG1061|consen  190 SHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-----------------------------------  234 (734)
T ss_pred             hCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-----------------------------------
Confidence              42  367889999999999999999999999999999975210                                   


Q ss_pred             CCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh
Q 003722          155 PSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI  234 (800)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~  234 (800)
                                                                       .++..+++.+.|.|+|.|++||+++.+++++
T Consensus       235 -------------------------------------------------~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  235 -------------------------------------------------REAEDICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             -------------------------------------------------hhHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence                                                             2345688999999999999999999999998


Q ss_pred             cCCH------HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCC
Q 003722          235 MSPK------EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTE  308 (800)
Q Consensus       235 l~p~------~~l~~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e  308 (800)
                      +.+.      ..++++..||+.++.+.++++|++|+||..+.+++|++|..+++.|||+|+||.|||..||+||+.|++.
T Consensus       266 ~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~  345 (734)
T KOG1061|consen  266 LVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND  345 (734)
T ss_pred             HHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH
Confidence            7541      3478899999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHH
Q 003722          309 SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI  388 (800)
Q Consensus       309 ~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~I  388 (800)
                      +|+.+|+.||.+|+.+.|.+|++++|+|||+||.+++++ ..|++.||+|++..           .+++|.|++++|++|
T Consensus       346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~-----------~~yvvqE~~vvi~di  413 (734)
T KOG1061|consen  346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETK-----------VDYVVQEAIVVIRDI  413 (734)
T ss_pred             hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhc-----------ccceeeehhHHHHhh
Confidence            999999999999999999999999999999999999998 99999999999853           356889999999999


Q ss_pred             HHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHh
Q 003722          389 IKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL  468 (800)
Q Consensus       389 l~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~  468 (800)
                      +|+||..++.++..|+..++.+++|+||+++|||+|||++.   +|+ ++++|+.+.++|.+|+.+||+++||+++|+|+
T Consensus       414 lRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~---i~~-a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl  489 (734)
T KOG1061|consen  414 LRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAER---IEN-ALELLESFLENFKDETAEVQLELLTAAIKLFL  489 (734)
T ss_pred             hhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhc---cCc-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999975   455 67899999999999999999999999999999


Q ss_pred             hcCCCChHHHHHHHHHHHHHHccCC-ChHHHhHHHHHHHHccCCcCCCCccchhhhhccCCchHHHHH-hhhccCCCCCC
Q 003722          469 CAKGGDMWTITRLFSYLLELAECDL-NYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVE-CIFRKQENLAA  546 (800)
Q Consensus       469 ~~p~e~~~~l~~L~q~vl~la~~D~-n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~-~lf~~~~~~~~  546 (800)
                      ++|.+.    +++++.+|.+|+.|. |+|+|||+.+|||+|+.+.                   ..|+ .+++++|....
T Consensus       490 ~~p~~t----q~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~-------------------~~a~~v~~~~kP~is~  546 (734)
T KOG1061|consen  490 KKPTET----QELLQGVLPLATADTDNPDLRDRGLIYWRLLSEDP-------------------LIAKDVVLAEKPLISE  546 (734)
T ss_pred             cCCccH----HHHHHHHHhhhhccccChhhhhhHHHHHHHhhcCH-------------------HHHHHHHhcCCCcccc
Confidence            999854    467888888888885 7999999999999998432                   2455 44667754432


Q ss_pred             C-CCccc----c-cccCCchhHHhhccC
Q 003722          547 S-EPIND----R-FYLPGSLSQIVLHAA  568 (800)
Q Consensus       547 ~-~~~~~----r-~~~lGSLS~~~~~~~  568 (800)
                      . ....+    + .-.+||||.+++++-
T Consensus       547 ~~~~~~p~~le~l~~~i~tlssVY~Kp~  574 (734)
T KOG1061|consen  547 ETDSLDPTLLEELLCDIGTLSSVYHKPP  574 (734)
T ss_pred             CCCCCCchHHHHHHHhhccccceeecCh
Confidence            2 11111    2 345899999986543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=2.2e-56  Score=516.04  Aligned_cols=413  Identities=29%  Similarity=0.440  Sum_probs=364.0

Q ss_pred             CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh-C
Q 003722            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGILLNDRSPGVVGAAAAAFASI-C   78 (800)
Q Consensus         1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~-L~~~l~~LL~D~dp~Vv~aAl~Af~eI-c   78 (800)
                      ||+|+.++++|.+...|.+++.|++|||||+||+|+.|+|+.+|+. .+. +.+.+..||.|++|.|+++|+.++.+| +
T Consensus       103 l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~  181 (526)
T PF01602_consen  103 LSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-VEDELIPKLKQLLSDKDPSVVSAALSLLSEIKC  181 (526)
T ss_dssp             HHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHC
T ss_pred             hhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-HHHHHHHHHhhhccCCcchhHHHHHHHHHHHcc
Confidence            4789999999999999999999999999999999999999999943 333 888999999999999999999999999 8


Q ss_pred             CCcc--cchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCC
Q 003722           79 PNNF--TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS  156 (800)
Q Consensus        79 P~~~--~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~  156 (800)
                      +++.  .++|+.+++||+++...+||+|+.+|++|.+|++...     .                               
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-----~-------------------------------  225 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-----E-------------------------------  225 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-----H-------------------------------
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-----h-------------------------------
Confidence            8876  8999999999999999999999999999999985210     0                               


Q ss_pred             CCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC
Q 003722          157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS  236 (800)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~  236 (800)
                                                                    +++...+++.+.++|++.|++|+++|+++++++.
T Consensus       226 ----------------------------------------------~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  226 ----------------------------------------------DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ----------------------------------------------hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence                                                          0011468888999999999999999999999998


Q ss_pred             CHHH-HHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhC-CcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHH
Q 003722          237 PKED-VKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS  313 (800)
Q Consensus       237 p~~~-l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~-p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~  313 (800)
                      +... +..++.+|+++|.+ ++|++|++|++|..|+..+ |.++..++..|+++++|+.+||++||++|+.|++++|+..
T Consensus       260 ~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~  339 (526)
T PF01602_consen  260 PSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE  339 (526)
T ss_dssp             SSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH
T ss_pred             cchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhh
Confidence            8654 78999999999975 5789999999999999998 6777778888989989999999999999999999999999


Q ss_pred             HHHHHHHhhhcC-ChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhC
Q 003722          314 VFKEFQDYIRDP-DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD  392 (800)
Q Consensus       314 Il~EL~~Yv~~~-d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~  392 (800)
                      |++||..|+++. |.+++++++++|+.||.+++....||++++++++...           +..+..+++.+++++++++
T Consensus       340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~-----------~~~~~~~~~~~i~~ll~~~  408 (526)
T PF01602_consen  340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS-----------GDYVSNEIINVIRDLLSNN  408 (526)
T ss_dssp             HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT-----------GGGCHCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc-----------cccccchHHHHHHHHhhcC
Confidence            999999999655 8889999999999999999999999999999999842           2456778888999999999


Q ss_pred             CcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCC
Q 003722          393 PSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG  472 (800)
Q Consensus       393 P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~  472 (800)
                      |+.+..++.+|++.++++.+|.++++++|++|||++..+... .++++++.++++|..|+..||.++||+++|++.+.|.
T Consensus       409 ~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~  487 (526)
T PF01602_consen  409 PELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE  487 (526)
T ss_dssp             TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc
Confidence            999999999999999999999999999999999998644322 6889999999999999999999999999999999986


Q ss_pred             CChHHHHHHHHHHHHHHcc-CCChHHHhHHHHHHHHccC
Q 003722          473 GDMWTITRLFSYLLELAEC-DLNYDVRDRARFFKKLFSH  510 (800)
Q Consensus       473 e~~~~l~~L~q~vl~la~~-D~n~DVRDRAr~y~~LL~~  510 (800)
                      +..  ...+++++..++++ |.|+||||||+||++||..
T Consensus       488 ~~~--~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~  524 (526)
T PF01602_consen  488 NEV--QNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS  524 (526)
T ss_dssp             TTH--HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred             hhh--HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence            432  34678888888875 5699999999999999964

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=100.00  E-value=8.7e-46  Score=430.06  Aligned_cols=410  Identities=23%  Similarity=0.351  Sum_probs=339.0

Q ss_pred             CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHH-HHHHHHHHhcCCCccHHHHHHHHHHHhCC
Q 003722            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGILLNDRSPGVVGAAAAAFASICP   79 (800)
Q Consensus         1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~-L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP   79 (800)
                      ||.||+++++++++.+|++|+.|++|||||+||+||.|+|+++++.-.+. +++++..|+.|.||.|+++|+.+|.+|+|
T Consensus       116 ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         116 LSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            78999999999999999999999999999999999999999999554444 78888999999999999999999999999


Q ss_pred             CcccchhHHHHHHHHhCCCCC--------hhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCccccccccccccc
Q 003722           80 NNFTLIGRNYRNLCQILPDVE--------EWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALED  151 (800)
Q Consensus        80 ~~~~Lih~~yr~Lc~~L~d~d--------EWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~  151 (800)
                      +   +.|++++..|..++.++        ||.+..+++.|+.|.++.                                 
T Consensus       196 e---~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~---------------------------------  239 (757)
T COG5096         196 E---LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTT---------------------------------  239 (757)
T ss_pred             h---hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCC---------------------------------
Confidence            9   78889999999988866        777778888887776421                                 


Q ss_pred             CCCCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHH
Q 003722          152 NGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV  231 (800)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~  231 (800)
                                                                        .| +...+..++.|.+++.|++|++.+++.
T Consensus       240 --------------------------------------------------~~-s~~~~~~~~~~~~~~~n~~vl~~av~~  268 (757)
T COG5096         240 --------------------------------------------------PD-SAEDFEERLSPPLQHNNAEVLLIAVKV  268 (757)
T ss_pred             --------------------------------------------------CC-cHHHHHHhccchhhhCcHHHHHHHHHH
Confidence                                                              01 234577788899999999999999999


Q ss_pred             HHhcCCH----HHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhc
Q 003722          232 HWIMSPK----EDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIV  306 (800)
Q Consensus       232 ~~~l~p~----~~l~~~v~pLv~LL~s~-~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La  306 (800)
                      .+.+.+.    ........||+.|+..+ ..++|+.+.++..+...+|..|.--.+.||++++||.|++..|+++++.++
T Consensus       269 i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~  348 (757)
T COG5096         269 ILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLA  348 (757)
T ss_pred             HHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcC
Confidence            8887753    23555667788888766 689999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhhhc--CChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhH---
Q 003722          307 TESSISSVFKEFQDYIRD--PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQS---  381 (800)
Q Consensus       307 ~e~Nv~~Il~EL~~Yv~~--~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~---  381 (800)
                      +..|..+++-|+.+|+..  .|.+++.++|++||.+|.+.+.....|++.++++++      | .+.. ..+++.|+   
T Consensus       349 ~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~------g-~~~~-~~Yi~~e~~~~  420 (757)
T COG5096         349 DDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLE------G-VWIR-GSYIVQEVRIV  420 (757)
T ss_pred             CchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhcc------c-hhhc-cchhhhhhccc
Confidence            999999999999999999  899999999999999999999999999999999987      1 1111 23444444   


Q ss_pred             --HHHHH---HHHHhCCcc-hHHHHHHHHHhhhccC----hhhHHHHH-----HhhhccccCCCCCCcchHHHHHHHHHh
Q 003722          382 --IISIK---SIIKQDPSC-HEKVIIQLFRSLDSIK----VPEARVMI-----IWMVGEYSSVGVKIPRMLTTVLKYLAW  446 (800)
Q Consensus       382 --V~vi~---~Il~~~P~~-~~~~i~~L~~~ld~i~----~p~Arasi-----iWLlGEy~~~~~~ip~i~~dvLr~l~~  446 (800)
                        |.+++   .+++.+|.. .+..+..++...+.++    .|.+|.++     +||+|||++.   +|...|+++|.+..
T Consensus       421 ~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~---i~r~~~~~l~~~~~  497 (757)
T COG5096         421 DCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDI---IPRLEPELLRIAIS  497 (757)
T ss_pred             ceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHH---HhhhhHHHHHHHHH
Confidence              44454   567777665 4444445555555554    79988888     9999999974   57778899999999


Q ss_pred             hhccCcHHHHHHHHHHHHHHHhhcCCCChH----HHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 003722          447 CFKSEAVETKLQILNTTIKVLLCAKGGDMW----TITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN  511 (800)
Q Consensus       447 ~F~~E~~~VKlqILta~aKL~~~~p~e~~~----~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~  511 (800)
                      +|.+|+.+||.+||++.+|+++..+....+    ....+.+++++   +-.++|+||||+||+++++.+
T Consensus       498 ~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~---~v~~~DlRDra~my~~~lst~  563 (757)
T COG5096         498 NFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFD---YVLVPDLRDRARMYSRLLSTP  563 (757)
T ss_pred             HhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHh---ccCChhHHHHHHHHHHHhcCC
Confidence            999999999999999999999998753221    11133333333   335789999999999999843

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-38  Score=361.45  Aligned_cols=453  Identities=17%  Similarity=0.227  Sum_probs=337.6

Q ss_pred             CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC
Q 003722            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN   80 (800)
Q Consensus         1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~   80 (800)
                      +|.|--+|+++-+.+-|.+.+..++|||||.|++|..|+++..| +..+.++.--.++|+|++++|+++++..+.++|-.
T Consensus       131 lg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~  209 (866)
T KOG1062|consen  131 LGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI  209 (866)
T ss_pred             hhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence            36677899999999999999999999999999999999999999 76777777778899999999999999999999965


Q ss_pred             c---ccchhHHHHHHHHhCCC---------------CChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccc
Q 003722           81 N---FTLIGRNYRNLCQILPD---------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDV  142 (800)
Q Consensus        81 ~---~~Lih~~yr~Lc~~L~d---------------~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~  142 (800)
                      .   ++-..+....|+.+|.+               .|||-||.||++|.-|.+..     +.             .+|.
T Consensus       210 ~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d-----~d-------------aSd~  271 (866)
T KOG1062|consen  210 SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND-----AD-------------ASDL  271 (866)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC-----cc-------------HHHH
Confidence            4   33223333344444443               79999999999999997421     10             0011


Q ss_pred             cccccccccCCCCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhc--cCC
Q 003722          143 FDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLL--WSH  220 (800)
Q Consensus       143 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL--~S~  220 (800)
                      |++                                                              +|-+.+...=  +..
T Consensus       272 M~D--------------------------------------------------------------iLaqvatntdsskN~  289 (866)
T KOG1062|consen  272 MND--------------------------------------------------------------ILAQVATNTDSSKNA  289 (866)
T ss_pred             HHH--------------------------------------------------------------HHHHHHhcccccccc
Confidence            100                                                              0001111111  233


Q ss_pred             ChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHh-cCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCc-hHHHHH
Q 003722          221 NSAVVLAAAGVHWIMSPKEDV-KRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKAL  297 (800)
Q Consensus       221 NsAVVlaaa~~~~~l~p~~~l-~~~v~pLv~LL-~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp-~~Ik~l  297 (800)
                      +.|+.++|+++++.+.+...+ ..+++.|-++| +++.|+|||+|..+.+.++..|...+.|-....-|..|| ..||++
T Consensus       290 GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrr  369 (866)
T KOG1062|consen  290 GNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRR  369 (866)
T ss_pred             hhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            468999999999999886654 45677887776 568999999999999999999999999987776666775 689999


Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCch
Q 003722          298 KLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADV  377 (800)
Q Consensus       298 KLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~v  377 (800)
                      .||+++.|+|++|+..+++||.+|+...|.+|+...+..|..+|++|++...|.++++++.++..   |        ..|
T Consensus       370 alELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a---G--------~~V  438 (866)
T KOG1062|consen  370 ALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA---G--------DFV  438 (866)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc---c--------ccc
Confidence            99999999999999999999999999999999999999999999999999999999999998742   2        222


Q ss_pred             hHhHHHHHHHHHHhC-CcchHHHHHHHHHhhhc-----cChhhHHHHHHhhhccccCCCCC-------CcchHHHHH---
Q 003722          378 LIQSIISIKSIIKQD-PSCHEKVIIQLFRSLDS-----IKVPEARVMIIWMVGEYSSVGVK-------IPRMLTTVL---  441 (800)
Q Consensus       378 v~E~V~vi~~Il~~~-P~~~~~~i~~L~~~ld~-----i~~p~ArasiiWLlGEy~~~~~~-------ip~i~~dvL---  441 (800)
                      -.+++..+-+||-.- ++.|+..+.+|...+..     +..+.....++|.|||||++.-.       +-....++.   
T Consensus       439 ~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l  518 (866)
T KOG1062|consen  439 NDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKL  518 (866)
T ss_pred             chhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHH
Confidence            222344455666666 88899999988875543     55555566679999999964210       111123444   


Q ss_pred             HHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCcCCCCccchh
Q 003722          442 KYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETN  521 (800)
Q Consensus       442 r~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~  521 (800)
                      ..+..++.. +..+|.++|++++||..+.+.. .++++++    +..-+-+.+.|+|+||.+|..|+...          
T Consensus       519 ~~v~~~~~s-~~~tk~yal~Al~KLSsr~~s~-~~ri~~l----I~~~~~s~~~elQQRa~E~~~l~~~~----------  582 (866)
T KOG1062|consen  519 EKVLMSHSS-DSTTKGYALTALLKLSSRFHSS-SERIKQL----ISSYKSSLDTELQQRAVEYNALFAKD----------  582 (866)
T ss_pred             HHHHHhccc-hHHHHHHHHHHHHHHHhhcccc-HHHHHHH----HHHhcccccHHHHHHHHHHHHHHHHH----------
Confidence            444444433 3889999999999999999863 3445443    33345678999999999999999653          


Q ss_pred             hhhccCCchHHHHHhhhccCCCCCCCCCcccccccCCchhHHhhccCCCCcc
Q 003722          522 ALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEP  573 (800)
Q Consensus       522 ~~~~~~~~~~~la~~lf~~~~~~~~~~~~~~r~~~lGSLS~~~~~~~~gy~~  573 (800)
                               .++.+.|+..+|..... +...+.  =|.....+...+.+|-+
T Consensus       583 ---------~~lr~siLe~mp~~e~~-~~~~~~--~g~~~~~i~~~~~p~~~  622 (866)
T KOG1062|consen  583 ---------KHLRKSILERMPSCEDI-TVDARL--DGNGPAAIEQGAEPYKS  622 (866)
T ss_pred             ---------HHHHHHhcccCcccccc-cccccc--ccchHHHHHhccCCCcc
Confidence                     14567788777766431 121221  37888888777777655

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.6e-38  Score=350.44  Aligned_cols=432  Identities=18%  Similarity=0.216  Sum_probs=331.7

Q ss_pred             cccccchHHHHHHHHhhcC--CCCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC--
Q 003722            4 IRLHVISPLVLVAVGKCAR--DPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC--   78 (800)
Q Consensus         4 IRv~~I~~iv~~aIkk~l~--D~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc--   78 (800)
                      |--.++.+-+-.-|.|.+.  +..+||||.||+|+.++|+..|+. ....|.+.+-.||+|++-+|+.||...+.-++  
T Consensus       138 iG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~  217 (938)
T KOG1077|consen  138 IGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKK  217 (938)
T ss_pred             hccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHc
Confidence            3345566666666777664  578999999999999999999955 44578888888999999999999888777776  


Q ss_pred             -CCccc-chhHHHHHHHHhCCC-------------CChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCccccc
Q 003722           79 -PNNFT-LIGRNYRNLCQILPD-------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVF  143 (800)
Q Consensus        79 -P~~~~-Lih~~yr~Lc~~L~d-------------~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~  143 (800)
                       |+.+. -+.++..+|.++...             ..||.|+.++++|..|.+.+    ||.                  
T Consensus       218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~----D~~------------------  275 (938)
T KOG1077|consen  218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPE----DPS------------------  275 (938)
T ss_pred             CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCC----Cch------------------
Confidence             44322 244455555555321             58999999999999995321    010                  


Q ss_pred             ccccccccCCCCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhh-----hhcc
Q 003722          144 DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTS-----PLLW  218 (800)
Q Consensus       144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~-----pLL~  218 (800)
                                       +..      .                               +..-++.+|+...     .-.|
T Consensus       276 -----------------~r~------~-------------------------------l~evl~~iLnk~~~~~~~k~vq  301 (938)
T KOG1077|consen  276 -----------------TRA------R-------------------------------LNEVLERILNKAQEPPKSKKVQ  301 (938)
T ss_pred             -----------------HHH------H-------------------------------HHHHHHHHHhccccCccccchH
Confidence                             000      0                               0011111222221     1135


Q ss_pred             CCCh--HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCC--cccccccccceecc-CC-
Q 003722          219 SHNS--AVVLAAAGVHWIMSP-KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP--HLFVPHYEDFFVSS-SD-  290 (800)
Q Consensus       219 S~Ns--AVVlaaa~~~~~l~p-~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p--~lF~~~l~~Ffi~~-~D-  290 (800)
                      ++|.  ||.++++++.+|+.+ ++.+.+++..|..+|+. .+|+||++|.++..|+...+  +....|....+-.. .+ 
T Consensus       302 ~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkter  381 (938)
T KOG1077|consen  302 HSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTER  381 (938)
T ss_pred             hhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhcccc
Confidence            5664  899999999999987 56789999999999975 79999999999999998765  35556765444332 34 


Q ss_pred             chHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccC
Q 003722          291 SYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIES  370 (800)
Q Consensus       291 p~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~  370 (800)
                      +.+||++.+|+||.+|+.+|++.|+.||+.|+...|..++.+.+-+++.+|+||+.+..|++++.++||+..   |+  +
T Consensus       382 DvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiria---gd--~  456 (938)
T KOG1077|consen  382 DVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA---GD--Y  456 (938)
T ss_pred             chHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh---cc--c
Confidence            468999999999999999999999999999999999999999999999999999999999999999999863   22  1


Q ss_pred             CCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhc--cChhhHHHHHHhhhccccCCCCCCcchH-HHHHHHHHhh
Q 003722          371 GNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGEYSSVGVKIPRML-TTVLKYLAWC  447 (800)
Q Consensus       371 ~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~--i~~p~ArasiiWLlGEy~~~~~~ip~i~-~dvLr~l~~~  447 (800)
                      ++ +  .||.   ++.+|+.++++.+..+++++.+++..  +.+...|++ .+|+||||+++..-|.+. ...|..+..+
T Consensus       457 vs-d--eVW~---RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvg-gyiLGEfg~LIa~~prss~~~qFsllh~K  529 (938)
T KOG1077|consen  457 VS-D--EVWY---RVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVG-GYILGEFGNLIADDPRSSPAVQFSLLHEK  529 (938)
T ss_pred             cc-H--HHHH---HhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhh-hhhhhhhhhhhcCCCCCChHHHHHHHHHH
Confidence            11 2  3565   56789999999999999999999975  456677777 899999999876555443 4568899999


Q ss_pred             hccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCcCCCCccchhhhhccC
Q 003722          448 FKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENK  527 (800)
Q Consensus       448 F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~  527 (800)
                      |+..++.+|..+||+.+|++...|+     ++.-.+.||++..+-.|+|+|+||.+|..|.....              .
T Consensus       530 ~~~~s~~tr~lLLtTyiKl~nl~PE-----i~~~v~~vFq~~~n~~D~ElQqRa~EYLql~k~as--------------~  590 (938)
T KOG1077|consen  530 LHLCSPVTRALLLTTYIKLINLFPE-----IKSNVQKVFQLYSNLIDVELQQRAVEYLQLSKLAS--------------T  590 (938)
T ss_pred             hccCChhHHHHHHHHHHHHHhhChh-----hhHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc--------------c
Confidence            9999999999999999999999986     44555566666555579999999999999997642              1


Q ss_pred             CchHHHHHhhhccCCCCCC
Q 003722          528 DLPLVLVECIFRKQENLAA  546 (800)
Q Consensus       528 ~~~~~la~~lf~~~~~~~~  546 (800)
                      |+   | ..+|.++|||+.
T Consensus       591 dv---L-~~vleeMPpF~e  605 (938)
T KOG1077|consen  591 DV---L-QTVLEEMPPFPE  605 (938)
T ss_pred             hH---H-HHHHhhCCCCcc
Confidence            32   3 467899999986

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.1e-28  Score=272.58  Aligned_cols=326  Identities=18%  Similarity=0.297  Sum_probs=272.4

Q ss_pred             CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh--hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC   78 (800)
Q Consensus         1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~--~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc   78 (800)
                      +|.+|-|++++.++++|+.|+.++++||||.|++||.-+|+....-  +.++|++-  .|+.+.||.+..+|+..+..+.
T Consensus       123 LckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~--fL~~e~DpsCkRNAFi~L~~~D  200 (948)
T KOG1058|consen  123 LCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIES--FLLTEQDPSCKRNAFLMLFTTD  200 (948)
T ss_pred             hhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHH--HHHhccCchhHHHHHHHHHhcC
Confidence            4789999999999999999999999999999999999999873211  34555543  4779999999999999999999


Q ss_pred             CCcccchhHHHHHHHHhCCCCChhh---HHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCC
Q 003722           79 PNNFTLIGRNYRNLCQILPDVEEWG---QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIP  155 (800)
Q Consensus        79 P~~~~Lih~~yr~Lc~~L~d~dEWg---Qi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~  155 (800)
                      |++      +..+|...+.++..|+   |.+|++++..-+-++     |.                              
T Consensus       201 ~Er------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~-----p~------------------------------  239 (948)
T KOG1058|consen  201 PER------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN-----PA------------------------------  239 (948)
T ss_pred             HHH------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC-----HH------------------------------
Confidence            987      4456777766666555   899999887765311     10                              


Q ss_pred             CCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhc
Q 003722          156 SRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM  235 (800)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l  235 (800)
                                                                       .-.++++++..+|++.++||+++|+..+..+
T Consensus       240 -------------------------------------------------~~~~~i~~i~~lL~stssaV~fEaa~tlv~l  270 (948)
T KOG1058|consen  240 -------------------------------------------------EKARYIRCIYNLLSSTSSAVIFEAAGTLVTL  270 (948)
T ss_pred             -------------------------------------------------HhhHHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence                                                             0136889999999999999999999999888


Q ss_pred             CC-HHHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHHhCCccccccccccee-ccCCchHHHHHHHHHHHhhcCCCCH
Q 003722          236 SP-KEDVKRIVKPLLFILR--SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFV-SSSDSYQSKALKLEILSSIVTESSI  311 (800)
Q Consensus       236 ~p-~~~l~~~v~pLv~LL~--s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi-~~~Dp~~Ik~lKLeIL~~La~e~Nv  311 (800)
                      ++ +..+++++..++.|+-  +++|++.++|+.|..+...+..+|+...-.|.- ...-+..||++.|+|...|++..|+
T Consensus       271 S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv  350 (948)
T KOG1058|consen  271 SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV  350 (948)
T ss_pred             cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH
Confidence            76 6789999999999984  579999999999999998888899998877763 3344468999999999999999999


Q ss_pred             HHHHHHHHHhhhc-------CChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHH
Q 003722          312 SSVFKEFQDYIRD-------PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS  384 (800)
Q Consensus       312 ~~Il~EL~~Yv~~-------~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~v  384 (800)
                      .+|+.-|+.-+..       .+..+++..|++|..||.+||..+..++..|+++|...           +.......+..
T Consensus       351 ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~-----------N~~aas~vl~F  419 (948)
T KOG1058|consen  351 EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDS-----------NEAAASDVLMF  419 (948)
T ss_pred             HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccC-----------CHHHHHHHHHH
Confidence            9999988765532       12368999999999999999999999999999998631           22234456678


Q ss_pred             HHHHHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCC
Q 003722          385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV  429 (800)
Q Consensus       385 i~~Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~  429 (800)
                      ++..++++|+.+..++.+|.+.++.|..+.+..+.+||+||||..
T Consensus       420 vrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~  464 (948)
T KOG1058|consen  420 VREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEG  464 (948)
T ss_pred             HHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999963

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-25  Score=254.24  Aligned_cols=407  Identities=17%  Similarity=0.230  Sum_probs=305.9

Q ss_pred             CCCcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC--
Q 003722            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC--   78 (800)
Q Consensus         1 MssIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc--   78 (800)
                      +|+|--|.++--+..-|-..++.+-|||||.|++.+.|+|-..|+..++.+-.+.++ |.|.||+|++||+.+++|+.  
T Consensus       133 LS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~Ek-LeDpDp~V~SAAV~VICELArK  211 (877)
T KOG1059|consen  133 LSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEK-LEDPDPSVVSAAVSVICELARK  211 (877)
T ss_pred             cccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHh-ccCCCchHHHHHHHHHHHHHhh
Confidence            466777888888999999999999999999999999999999997688888776665 79999999999999999995  


Q ss_pred             -CCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCC
Q 003722           79 -PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSR  157 (800)
Q Consensus        79 -P~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (800)
                       |.++=-+.|.|.+|+.  ..-+.|.-|.+|.++...++-.     |-                                
T Consensus       212 nPknyL~LAP~ffkllt--tSsNNWmLIKiiKLF~aLtplE-----PR--------------------------------  252 (877)
T KOG1059|consen  212 NPQNYLQLAPLFYKLLV--TSSNNWVLIKLLKLFAALTPLE-----PR--------------------------------  252 (877)
T ss_pred             CCcccccccHHHHHHHh--ccCCCeehHHHHHHHhhccccC-----ch--------------------------------
Confidence             7777778899999865  5679999999999999887521     10                                


Q ss_pred             CcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCCh-HHHHHHHHHHHhc-
Q 003722          158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-AVVLAAAGVHWIM-  235 (800)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~Ns-AVVlaaa~~~~~l-  235 (800)
                               +.                                      ..||..+..++.|..+ +++++|+++.... 
T Consensus       253 ---------Lg--------------------------------------KKLieplt~li~sT~AmSLlYECvNTVVa~s  285 (877)
T KOG1059|consen  253 ---------LG--------------------------------------KKLIEPITELMESTVAMSLLYECVNTVVAVS  285 (877)
T ss_pred             ---------hh--------------------------------------hhhhhHHHHHHHhhHHHHHHHHHHHHheeeh
Confidence                     00                                      1244455555555555 5999999998754 


Q ss_pred             ----CC--HHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCCcccccccccceeccCC-chHHHHHHHHHHHhhcC
Q 003722          236 ----SP--KEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSD-SYQSKALKLEILSSIVT  307 (800)
Q Consensus       236 ----~p--~~~l~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~D-p~~Ik~lKLeIL~~La~  307 (800)
                          .|  ...++.++.-|-.|+. +++|.+|++|-.+.+|+..+|...+.|-....-+.+| +.+||.+.|++|+-+++
T Consensus       286 ~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  286 MSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             hccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence                22  3457788888866664 6899999999999999999999999997665544444 67899999999999999


Q ss_pred             CCCHHHHHHHHHHhhhcCCh-hHHHHHH-HHHHHHHhh-C--CccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHH
Q 003722          308 ESSISSVFKEFQDYIRDPDR-RFAADTV-AAIGLCARK-L--PKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSI  382 (800)
Q Consensus       308 e~Nv~~Il~EL~~Yv~~~d~-~f~~~aI-~aIg~lA~k-~--p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V  382 (800)
                      +.|+..|++-|..|+...+. .++-+.+ +-|+.|+.. |  =...+|++.+|++|.+.+.    ..|   + ..+.+  
T Consensus       366 kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~----~~~---G-~~I~e--  435 (877)
T KOG1059|consen  366 KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG----TRH---G-SLIAE--  435 (877)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc----cch---h-hHHHH--
Confidence            99999999999999987777 6888777 666777653 2  3567899999999988652    111   1 23444  


Q ss_pred             HHHHHHHHhCCcchHHHHHHHHHhhhcc----------ChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHh-hhccC
Q 003722          383 ISIKSIIKQDPSCHEKVIIQLFRSLDSI----------KVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAW-CFKSE  451 (800)
Q Consensus       383 ~vi~~Il~~~P~~~~~~i~~L~~~ld~i----------~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~-~F~~E  451 (800)
                       .|.++-.+-|..+...+......+++-          .-++...+.+|++|||+...+. |   .+++..+.+ ++...
T Consensus       436 -Qi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven-~---~~~leamlrpr~~~l  510 (877)
T KOG1059|consen  436 -QIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVEN-P---NDTLEAMLRPRSDLL  510 (877)
T ss_pred             -HHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhC-H---HHHHHHHhcCccccC
Confidence             355666677887777787777777621          1255666779999999876542 2   477777774 55577


Q ss_pred             cHHHHHHHHHHHHHHHhhc-----CCCChHHHHHHHHHHHH---HHccCCChHHHhHHHHHHHHcc
Q 003722          452 AVETKLQILNTTIKVLLCA-----KGGDMWTITRLFSYLLE---LAECDLNYDVRDRARFFKKLFS  509 (800)
Q Consensus       452 ~~~VKlqILta~aKL~~~~-----p~e~~~~l~~L~q~vl~---la~~D~n~DVRDRAr~y~~LL~  509 (800)
                      +..++.-.+..++|+|+..     |..+.+.+-.|.+.++.   .-.+..+.|||.||.....|+.
T Consensus       511 p~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~  576 (877)
T KOG1059|consen  511 PGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIR  576 (877)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHH
Confidence            8899999999999998864     22222223333343332   2235569999999655555443

>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal

Probab=99.84  E-value=2.2e-21  Score=186.55  Aligned_cols=100  Identities=28%  Similarity=0.350  Sum_probs=80.3

Q ss_pred             hhhhhhhhccCCCCCCCCCccchhhhhccc---------------cceeecccCccccCceeecccccCCCCeeEEEEec
Q 003722          685 SKRALESWLDEQPGSSSPSASEQIQVRQSS---------------ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFS  749 (800)
Q Consensus       685 ~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~k~~~ll~~~~g~gl~~~y~f~  749 (800)
                      +|++++++||++||. .++..+..  ..|+               ...+ ...|+||++|+|+|||+++|+||+|+|||+
T Consensus         1 ~k~~~~~LLDLddf~-~p~~~P~~--~~spsl~~~L~~ls~s~~~~~~~-~~~ps~v~~k~~eLL~~v~G~GL~v~Y~F~   76 (145)
T PF14796_consen    1 PKSKEDSLLDLDDFA-VPPVAPVS--ILSPSLGSDLEGLSLSDSSSVPS-VVSPSFVPPKKYELLNRVNGKGLSVEYRFS   76 (145)
T ss_pred             CCccccccccccccc-CCCcCCcc--ccCcchhhhccCCCcCccccccc-ccCCcccCcceEEeeeccCCCceeEEEEEc
Confidence            478899999999987 22222211  2222               1121 123889999999999999999999999999


Q ss_pred             CCCccCCCceEEEEEEEEecCCCceeceEeeeccccccc
Q 003722          750 SEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKAL  788 (800)
Q Consensus       750 ~~~~~~~~~~v~v~~~~~N~s~~~~~~i~~~~~~~~~~~  788 (800)
                      |+||+++++||||||+|+|+|++++++|+|++|++....
T Consensus        77 RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~  115 (145)
T PF14796_consen   77 RQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGM  115 (145)
T ss_pred             cCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCc
Confidence            999999999999999999999999999999999965443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.4e-18  Score=199.07  Aligned_cols=410  Identities=19%  Similarity=0.213  Sum_probs=302.9

Q ss_pred             HHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC------cc---
Q 003722           12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN------NF---   82 (800)
Q Consensus        12 iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~------~~---   82 (800)
                      +++..+.|-.+-..+.+|-.|.-++.++  +|- .....+.++++...-|+++.|-.+|+..=+.+.|.      ||   
T Consensus       100 ivtsslmkD~t~~~d~yr~~AiR~L~~I--~d~-~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~ne  176 (865)
T KOG1078|consen  100 IVTSSLMKDMTGKEDLYRAAAIRALCSI--IDG-TMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANE  176 (865)
T ss_pred             hhhHHHHhhccCCCcchhHHHHHHHHhh--cCc-chhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHh
Confidence            4666777777778888887777666644  333 56677889999999999999999998865555443      22   


Q ss_pred             ---------cchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCC
Q 003722           83 ---------TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNG  153 (800)
Q Consensus        83 ---------~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~  153 (800)
                               .+.+-|.+.|+..+.+-|--.--.+++.+++-.     +.+|-   ..+--                .   
T Consensus       177 iqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~-----~~~~~---A~~~l----------------i---  229 (865)
T KOG1078|consen  177 VQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGS-----LKSPL---AVCML----------------I---  229 (865)
T ss_pred             hhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccc-----ccchh---HHHHH----------------H---
Confidence                     234466777777776666666555555555410     00110   00000                0   


Q ss_pred             CCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHH
Q 003722          154 IPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW  233 (800)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~  233 (800)
                                 ....+...+            +             ...+.-   +..-+..+|.|...+|+++|++++.
T Consensus       230 -----------r~~~~~l~~------------~-------------~~~~s~---~~~fl~s~l~~K~emV~~EaArai~  270 (865)
T KOG1078|consen  230 -----------RIASELLKE------------N-------------QQADSP---LFPFLESCLRHKSEMVIYEAARAIV  270 (865)
T ss_pred             -----------HHHHHHhhh------------c-------------ccchhh---HHHHHHHHHhchhHHHHHHHHHHHh
Confidence                       000000000            0             001222   3444556788999999999999987


Q ss_pred             hcCC--HHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccccccccceeccCCc-hHHHHHHHHHHHhhcCCC
Q 003722          234 IMSP--KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTES  309 (800)
Q Consensus       234 ~l~p--~~~l~~~v~pLv~LL~s~-~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp-~~Ik~lKLeIL~~La~e~  309 (800)
                      .+..  ...+..++..|-.++.++ +-.||.+++.|.+++..+|+...-.-...--+-+|+ ..|..+|+..|++-.+++
T Consensus       271 ~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~  350 (865)
T KOG1078|consen  271 SLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTES  350 (865)
T ss_pred             hccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchh
Confidence            7653  455666777777777774 678999999999999999987664433333335675 589999999999999999


Q ss_pred             CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHH
Q 003722          310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII  389 (800)
Q Consensus       310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il  389 (800)
                      |+..+++.+..|+.+.+++|..-.|.||..++.+||......+++|-++|+++   |+..       +....|.+|-.|+
T Consensus       351 sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~e---Gg~e-------~K~aivd~Ii~ii  420 (865)
T KOG1078|consen  351 SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREE---GGFE-------FKRAIVDAIIDII  420 (865)
T ss_pred             HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhc---cCch-------HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999874   3333       3333445666788


Q ss_pred             HhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhh
Q 003722          390 KQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC  469 (800)
Q Consensus       390 ~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~  469 (800)
                      ..+|+..+..+.+||.+++++..+..-.-|+.++|.-|... ..|   ..+.|+++++..-|+..||...+++++|+...
T Consensus       421 e~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a-~~P---skyir~iyNRviLEn~ivRaaAv~alaKfg~~  496 (865)
T KOG1078|consen  421 EENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKA-PNP---SKYIRFIYNRVILENAIVRAAAVSALAKFGAQ  496 (865)
T ss_pred             HhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCC-CCc---chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC
Confidence            89999999999999999999999888888999999988643 234   47899999999999999999999999999965


Q ss_pred             cCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHcc
Q 003722          470 AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS  509 (800)
Q Consensus       470 ~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~  509 (800)
                      .+.-.. .+.-+    +..|.+|.+.+|||||+||.+.+.
T Consensus       497 ~~~l~~-sI~vl----lkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  497 DVVLLP-SILVL----LKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             CCCccc-cHHHH----HHHHhcCchHHHHHHHHHHHHHhh
Confidence            544222 23333    455678999999999999999887

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.81  E-value=3.5e-17  Score=181.78  Aligned_cols=281  Identities=17%  Similarity=0.165  Sum_probs=231.1

Q ss_pred             hhhccCCChHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCCcccccccccceecc
Q 003722          214 SPLLWSHNSAVVLAAAGVHWIMSP----KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSS  288 (800)
Q Consensus       214 ~pLL~S~NsAVVlaaa~~~~~l~p----~~~l~~~v~pLv~LL~s~-~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~  288 (800)
                      ..+|.+...+|.|++|++.+.++.    ++.+...+..|-.+|.+. .-.||.+++.|..|+..+|+...-.-+..--+-
T Consensus       270 ~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLI  349 (898)
T COG5240         270 NSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLI  349 (898)
T ss_pred             HHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHh
Confidence            344556668999999999888654    456788888998888874 568999999999999999986654433333334


Q ss_pred             CCc-hHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhcccc
Q 003722          289 SDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSD  367 (800)
Q Consensus       289 ~Dp-~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~  367 (800)
                      +|. ..|...++.-|.+-.|++|+..+++.+-.|+.|..+.|..-+|.||..++.+||.....++++|.+.|.++   |+
T Consensus       350 sd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e---Gg  426 (898)
T COG5240         350 SDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE---GG  426 (898)
T ss_pred             hcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc---cc
Confidence            553 57999999999999999999999999999999999999999999999999999999999999999988764   22


Q ss_pred             ccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhh
Q 003722          368 IESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWC  447 (800)
Q Consensus       368 ~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~  447 (800)
                      .       .+-.-.|.+|.+++...|+..+.++..||.+++++..++.-..|+-|+|+-|... ..|   ..+.|+++++
T Consensus       427 ~-------eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a-~~P---~~yvrhIyNR  495 (898)
T COG5240         427 L-------EFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRA-KTP---GKYVRHIYNR  495 (898)
T ss_pred             c-------hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCC-CCc---chHHHHHHHH
Confidence            2       2334455577889999999999999999999999999999999999999988643 233   4789999999


Q ss_pred             hccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 003722          448 FKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN  511 (800)
Q Consensus       448 F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~  511 (800)
                      ..-|...||...+.++.|+.+......   +.+-...+|..|.+|.|.+|||||-|..+-+...
T Consensus       496 ~iLEN~ivRsaAv~aLskf~ln~~d~~---~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~  556 (898)
T COG5240         496 LILENNIVRSAAVQALSKFALNISDVV---SPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS  556 (898)
T ss_pred             HHHhhhHHHHHHHHHHHHhccCccccc---cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence            999999999999999999987654322   2334445667778899999999999999888643

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.84  E-value=2.4e-07  Score=107.78  Aligned_cols=95  Identities=16%  Similarity=0.104  Sum_probs=44.6

Q ss_pred             HHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHHHHh
Q 003722           16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI   95 (800)
Q Consensus        16 aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc~~   95 (800)
                      .+-+.+..+++.+||.+-+++..+...+| +..--....+.+=|.+++|.+.+.|+.++..++..  +++......+.+.
T Consensus        46 ~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~l  122 (526)
T PF01602_consen   46 EVIKLISSKDLELKRLGYLYLSLYLHEDP-ELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKL  122 (526)
T ss_dssp             HHHCTCSSSSHHHHHHHHHHHHHHTTTSH-HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHH
Confidence            33344445566666666666665555555 22222333333345555666666666666555521  2333333344444


Q ss_pred             CCCCChhhHHHHHHHHHh
Q 003722           96 LPDVEEWGQILLIEILLR  113 (800)
Q Consensus        96 L~d~dEWgQi~iL~lL~r  113 (800)
                      |.+-++.-+-..+-.+.+
T Consensus       123 l~~~~~~VRk~A~~~l~~  140 (526)
T PF01602_consen  123 LSDPSPYVRKKAALALLK  140 (526)
T ss_dssp             HHSSSHHHHHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHH
Confidence            445555444444433333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=98.27  E-value=0.0013  Score=79.89  Aligned_cols=302  Identities=15%  Similarity=0.099  Sum_probs=173.5

Q ss_pred             ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchh
Q 003722            7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIG   86 (800)
Q Consensus         7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih   86 (800)
                      |+++-+++.+++|-+.|++|+||-.|.-++.++  ..| +..+.+...+.++|.|++|.|--+|+.++..+....-+++.
T Consensus       100 pelalLaINtl~KDl~d~Np~IRaLALRtLs~I--r~~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~  176 (746)
T PTZ00429        100 PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI--RVS-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY  176 (746)
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc
Confidence            566678899999999999999999999988865  345 55677888889999999999999999998776432222222


Q ss_pred             --HHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhh
Q 003722           87 --RNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV  164 (800)
Q Consensus        87 --~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  164 (800)
                        .-.-+|-.+|.|-|+--+...+.+|.......     |. .+..                                  
T Consensus       177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~-----~~-~l~l----------------------------------  216 (746)
T PTZ00429        177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG-----SE-KIES----------------------------------  216 (746)
T ss_pred             ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC-----ch-hhHH----------------------------------
Confidence              12335666678888888888888887765211     10 0000                                  


Q ss_pred             hhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH--HHHH
Q 003722          165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK--EDVK  242 (800)
Q Consensus       165 ~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~--~~l~  242 (800)
                         .+                                  +-+..|++    .|...|.=-.+...+++....|.  ....
T Consensus       217 ---~~----------------------------------~~~~~Ll~----~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~  255 (746)
T PTZ00429        217 ---SN----------------------------------EWVNRLVY----HLPECNEWGQLYILELLAAQRPSDKESAE  255 (746)
T ss_pred             ---HH----------------------------------HHHHHHHH----HhhcCChHHHHHHHHHHHhcCCCCcHHHH
Confidence               00                                  00011111    11222221222223333333342  3345


Q ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhCC----cccccccc---c--ceeccCCchHHHHHHHHHHHhhcCCCCHHH
Q 003722          243 RIVKPLLFILRSSGASKYVVLCNIQVFAKALP----HLFVPHYE---D--FFVSSSDSYQSKALKLEILSSIVTESSISS  313 (800)
Q Consensus       243 ~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~~p----~lF~~~l~---~--Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~  313 (800)
                      .+...+...|.+.+  ..|+|..+..++...+    .+...-++   .  .++..++| .++...|+-|..|+... -..
T Consensus       256 ~il~~l~~~Lq~~N--~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~-eiqyvaLr~I~~i~~~~-P~l  331 (746)
T PTZ00429        256 TLLTRVLPRMSHQN--PAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDA-ETQYIVCKNIHALLVIF-PNL  331 (746)
T ss_pred             HHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCc-cHHHHHHHHHHHHHHHC-HHH
Confidence            56666666665422  3455555555443332    22222111   1  22333444 47777776665555422 233


Q ss_pred             HHHHHHH-hhhcCChh-HHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHh
Q 003722          314 VFKEFQD-YIRDPDRR-FAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ  391 (800)
Q Consensus       314 Il~EL~~-Yv~~~d~~-f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~  391 (800)
                      +..++.. |+.-.|+. ++...+.-+-.+|  -+.....+++=|...+..           .+..++.++|..|..+-.+
T Consensus       332 f~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La--ne~Nv~~IL~EL~eYa~d-----------~D~ef~r~aIrAIg~lA~k  398 (746)
T PTZ00429        332 LRTNLDSFYVRYSDPPFVKLEKLRLLLKLV--TPSVAPEILKELAEYASG-----------VDMVFVVEVVRAIASLAIK  398 (746)
T ss_pred             HHHHHHhhhcccCCcHHHHHHHHHHHHHHc--CcccHHHHHHHHHHHhhc-----------CCHHHHHHHHHHHHHHHHh
Confidence            4445544 35555654 4445555555554  245555666555554431           1334778888888888888


Q ss_pred             CCcchHHHHHHHHHhhhc
Q 003722          392 DPSCHEKVIIQLFRSLDS  409 (800)
Q Consensus       392 ~P~~~~~~i~~L~~~ld~  409 (800)
                      +|......+..|++.+..
T Consensus       399 ~~~~a~~cV~~Ll~ll~~  416 (746)
T PTZ00429        399 VDSVAPDCANLLLQIVDR  416 (746)
T ss_pred             ChHHHHHHHHHHHHHhcC
Confidence            888888888888877753

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.0012  Score=78.10  Aligned_cols=56  Identities=30%  Similarity=0.428  Sum_probs=51.4

Q ss_pred             ccCccccCceeecccccCCCCeeEEEEecCCCccCCCceEEEEEEEEecCCCceeceEeeec
Q 003722          721 NIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDE  782 (800)
Q Consensus       721 ~~~~~~~~k~~~ll~~~~g~gl~~~y~f~~~~~~~~~~~v~v~~~~~N~s~~~~~~i~~~~~  782 (800)
                      ++|..++.|.+++||++.|+||-++|+|+|.|.      |.+++.|+|.++.++.+||++-.
T Consensus       769 ~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~~------~~i~~~~~n~~~~~~~~~~l~~p  824 (968)
T KOG1060|consen  769 KIPTHIEEKSIELLNEVEGSGLDLEYSFSRLPD------VSISLHFTNKSDLELLGIHLKLP  824 (968)
T ss_pred             cCCccCcchhHhhhhhcccCCcceeeeccCCCC------eeEEEecccCCCcccccceeecc
Confidence            467899999999999999999999999999993      88999999999999999999543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.20  E-value=4.6e-06  Score=84.20  Aligned_cols=112  Identities=25%  Similarity=0.309  Sum_probs=92.7

Q ss_pred             CcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHH-HHHHHHHhcCCCccHHHHHHHHHHHhCCC-
Q 003722            3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAI-EEIVGILLNDRSPGVVGAAAAAFASICPN-   80 (800)
Q Consensus         3 sIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L-~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~-   80 (800)
                      .+|.|.+++..+..+.+++.|++|+|||+|++++.++..-+.-..++.+ ..++ .+|.|.++.|...|...|.++... 
T Consensus        16 ~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l-~~l~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   16 CIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL-KLLVDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             HHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999999988763355666 5555 578999999999999999999755 


Q ss_pred             cccchhHHHHHHHHhCCCCChhhH---------HHHHHHHHhhh
Q 003722           81 NFTLIGRNYRNLCQILPDVEEWGQ---------ILLIEILLRYV  115 (800)
Q Consensus        81 ~~~Lih~~yr~Lc~~L~d~dEWgQ---------i~iL~lL~rY~  115 (800)
                      .-..+..++-.++..|..+.+|.+         ..+++.|..|.
T Consensus        95 ~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i  138 (178)
T PF12717_consen   95 NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI  138 (178)
T ss_pred             cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence            456777888888888888888863         35666666665

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.18  E-value=0.00015  Score=90.58  Aligned_cols=226  Identities=13%  Similarity=0.081  Sum_probs=134.5

Q ss_pred             HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHH
Q 003722           13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNL   92 (800)
Q Consensus        13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~L   92 (800)
                      .+..+...+.|.+|.||+.|+.++.++.  +|     ...+.|..+|+|.++.|-..|+.++.++-... .    .-..|
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--~~-----~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~----~~~~L  689 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT--PP-----GFGPALVAALGDGAAAVRRAAAEGLRELVEVL-P----PAPAL  689 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc--ch-----hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-C----chHHH
Confidence            4567788899999999999999999864  22     23445557889999999999999998883110 0    11246


Q ss_pred             HHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhhh
Q 003722           93 CQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYI  172 (800)
Q Consensus        93 c~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  172 (800)
                      ...|.+-|++-+..+++.|......                                                       
T Consensus       690 ~~~L~~~d~~VR~~A~~aL~~~~~~-------------------------------------------------------  714 (897)
T PRK13800        690 RDHLGSPDPVVRAAALDVLRALRAG-------------------------------------------------------  714 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHHhhccC-------------------------------------------------------
Confidence            6677778888888888877653210                                                       


Q ss_pred             cccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 003722          173 EGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL  252 (800)
Q Consensus       173 ~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL  252 (800)
                                                      +...|+    .+|...++.|-.+|++.+-.+.+.       .+|+.++
T Consensus       715 --------------------------------~~~~l~----~~L~D~d~~VR~~Av~aL~~~~~~-------~~l~~~l  751 (897)
T PRK13800        715 --------------------------------DAALFA----AALGDPDHRVRIEAVRALVSVDDV-------ESVAGAA  751 (897)
T ss_pred             --------------------------------CHHHHH----HHhcCCCHHHHHHHHHHHhcccCc-------HHHHHHh
Confidence                                            001122    245666777777777666555432       2344555


Q ss_pred             cC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHH
Q 003722          253 RS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAA  331 (800)
Q Consensus       253 ~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~  331 (800)
                      .. ++++|..+...|..+....+..+.. +..+  ..++...||...+.-|..+.++..+   ...|...+.+.|..++.
T Consensus       752 ~D~~~~VR~~aa~aL~~~~~~~~~~~~~-L~~l--l~D~d~~VR~aA~~aLg~~g~~~~~---~~~l~~aL~d~d~~VR~  825 (897)
T PRK13800        752 TDENREVRIAVAKGLATLGAGGAPAGDA-VRAL--TGDPDPLVRAAALAALAELGCPPDD---VAAATAALRASAWQVRQ  825 (897)
T ss_pred             cCCCHHHHHHHHHHHHHhccccchhHHH-HHHH--hcCCCHHHHHHHHHHHHhcCCcchh---HHHHHHHhcCCChHHHH
Confidence            43 4667776666666554333322111 1111  1122245777777776666554322   23344555666666666


Q ss_pred             HHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722          332 DTVAAIGLCARKLPKMANTCVEGLLALIR  360 (800)
Q Consensus       332 ~aI~aIg~lA~k~p~~a~~~l~~LL~LL~  360 (800)
                      .|++++|.+..      ...+..|+.+|+
T Consensus       826 ~Aa~aL~~l~~------~~a~~~L~~~L~  848 (897)
T PRK13800        826 GAARALAGAAA------DVAVPALVEALT  848 (897)
T ss_pred             HHHHHHHhccc------cchHHHHHHHhc
Confidence            67777765431      234456666654

>PRK09687 putative lyase; Provisional

Probab=98.07  E-value=0.00032  Score=76.03  Aligned_cols=235  Identities=12%  Similarity=0.047  Sum_probs=159.6

Q ss_pred             HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCC-CcccchhHHHHH
Q 003722           13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP-NNFTLIGRNYRN   91 (800)
Q Consensus        13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP-~~~~Lih~~yr~   91 (800)
                      -+..+.+.+.|.++.||..|+.++.++   ..    +...+.+..|+.|.++.|-..|+.+|-++-. .+-  ....+.-
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~---~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~~~   94 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLR---GG----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVFNI   94 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhc---Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHHHH
Confidence            356778889999999999999998755   22    2334455668899999999999999999863 221  2234444


Q ss_pred             HHHh-CCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhh
Q 003722           92 LCQI-LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS  170 (800)
Q Consensus        92 Lc~~-L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  170 (800)
                      |..+ +.|-+++-+...+..|...+...                                                    
T Consensus        95 L~~l~~~D~d~~VR~~A~~aLG~~~~~~----------------------------------------------------  122 (280)
T PRK09687         95 LNNLALEDKSACVRASAINATGHRCKKN----------------------------------------------------  122 (280)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcccccc----------------------------------------------------
Confidence            4444 45666666666666665543100                                                    


Q ss_pred             hhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003722          171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF  250 (800)
Q Consensus       171 ~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~  250 (800)
                                                     ..+ ...++..+..++.+.++-|-++++..+-.+..+    .++.+|+.
T Consensus       123 -------------------------------~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~----~ai~~L~~  166 (280)
T PRK09687        123 -------------------------------PLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE----AAIPLLIN  166 (280)
T ss_pred             -------------------------------ccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH----HHHHHHHH
Confidence                                           000 012445566777888999999999988776654    56678899


Q ss_pred             HhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCC-chHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChh
Q 003722          251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSD-SYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR  328 (800)
Q Consensus       251 LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~D-p~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~  328 (800)
                      +|.. ++++++-+...+..+....|..+..-...    ..| ...||...+.-|-.+-++.-++.|+++|..    .+  
T Consensus       167 ~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~----L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~----~~--  236 (280)
T PRK09687        167 LLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAM----LQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKK----GT--  236 (280)
T ss_pred             HhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHccCChhHHHHHHHHHcC----Cc--
Confidence            9875 57888888888877632344443332221    244 468999999999998888777777776653    33  


Q ss_pred             HHHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722          329 FAADTVAAIGLCARKLPKMANTCVEGLLALIR  360 (800)
Q Consensus       329 f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~  360 (800)
                      +...++.|+|.++..      ..+..|..++.
T Consensus       237 ~~~~a~~ALg~ig~~------~a~p~L~~l~~  262 (280)
T PRK09687        237 VGDLIIEAAGELGDK------TLLPVLDTLLY  262 (280)
T ss_pred             hHHHHHHHHHhcCCH------hHHHHHHHHHh
Confidence            677899999987753      56677777775

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.79  E-value=0.0015  Score=81.79  Aligned_cols=229  Identities=14%  Similarity=0.089  Sum_probs=154.5

Q ss_pred             HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHH
Q 003722           11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR   90 (800)
Q Consensus        11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr   90 (800)
                      +-.+..|.+.+.|.++-||.+|+.++.++-...+ . .    ..+..+|.|.++.|-.+|+.+|..+-+...       .
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-~-~----~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~  717 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-P-A----PALRDHLGSPDPVVRAAALDVLRALRAGDA-------A  717 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-c-h----HHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------H
Confidence            3355677788999999999999999988743323 1 1    234457889999999999999988754331       2


Q ss_pred             HHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhh
Q 003722           91 NLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS  170 (800)
Q Consensus        91 ~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  170 (800)
                      .|+..|.|-|++-+...++.|.+...                                                      
T Consensus       718 ~l~~~L~D~d~~VR~~Av~aL~~~~~------------------------------------------------------  743 (897)
T PRK13800        718 LFAAALGDPDHRVRIEAVRALVSVDD------------------------------------------------------  743 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcccC------------------------------------------------------
Confidence            46677889999888877777665310                                                      


Q ss_pred             hhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003722          171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF  250 (800)
Q Consensus       171 ~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~  250 (800)
                                                       .      ..+..+|...|+-|-.+++..+-.+.....  .....|+.
T Consensus       744 ---------------------------------~------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--~~~~~L~~  782 (897)
T PRK13800        744 ---------------------------------V------ESVAGAATDENREVRIAVAKGLATLGAGGA--PAGDAVRA  782 (897)
T ss_pred             ---------------------------------c------HHHHHHhcCCCHHHHHHHHHHHHHhccccc--hhHHHHHH
Confidence                                             0      012345777888899999998877764321  12456778


Q ss_pred             HhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhH
Q 003722          251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRF  329 (800)
Q Consensus       251 LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f  329 (800)
                      ++.. ++++|..++..|..+-.  +......+..+  ..++...||...++.|..+.++.-+    .-|...+.|.+..+
T Consensus       783 ll~D~d~~VR~aA~~aLg~~g~--~~~~~~~l~~a--L~d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~V  854 (897)
T PRK13800        783 LTGDPDPLVRAAALAALAELGC--PPDDVAAATAA--LRASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDV  854 (897)
T ss_pred             HhcCCCHHHHHHHHHHHHhcCC--cchhHHHHHHH--hcCCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHH
Confidence            8864 68899998888876532  22111122222  2233467999999999998765544    44455557889999


Q ss_pred             HHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722          330 AADTVAAIGLCARKLPKMANTCVEGLLALIR  360 (800)
Q Consensus       330 ~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~  360 (800)
                      +..+++++|++  ..+   ......|...++
T Consensus       855 R~~A~~aL~~~--~~~---~~a~~~L~~al~  880 (897)
T PRK13800        855 RKAAVLALTRW--PGD---PAARDALTTALT  880 (897)
T ss_pred             HHHHHHHHhcc--CCC---HHHHHHHHHHHh
Confidence            99999999985  122   234555556655

>PRK09687 putative lyase; Provisional

Probab=97.77  E-value=0.0014  Score=71.09  Aligned_cols=223  Identities=12%  Similarity=0.018  Sum_probs=133.9

Q ss_pred             HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhcCCCccHHHHHHHHHHHhCCCcccchhHHH
Q 003722           11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGI-LLNDRSPGVVGAAAAAFASICPNNFTLIGRNY   89 (800)
Q Consensus        11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~-LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~y   89 (800)
                      +-+...+.+.+.|.+|.||+.|+.++.++=.  +........+.|.. +++|+++.|-.+|+.++-++|+..........
T Consensus        53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~  130 (280)
T PRK09687         53 QDVFRLAIELCSSKNPIERDIGADILSQLGM--AKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIV  130 (280)
T ss_pred             chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHH
Confidence            3455667778999999999999999998633  21111233334443 47999999999999999999865432222333


Q ss_pred             HHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhh
Q 003722           90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSR  169 (800)
Q Consensus        90 r~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  169 (800)
                      -.|...+.|-+..-+...+..|.++.-                                                     
T Consensus       131 ~~l~~~~~D~~~~VR~~a~~aLg~~~~-----------------------------------------------------  157 (280)
T PRK09687        131 EQSQITAFDKSTNVRFAVAFALSVIND-----------------------------------------------------  157 (280)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHhccCC-----------------------------------------------------
Confidence            344444555544334444444432210                                                     


Q ss_pred             hhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003722          170 SYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL  249 (800)
Q Consensus       170 ~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv  249 (800)
                                                           ..-+..+.++|...++.|-.+|+..+=.+...  -..+..+|+
T Consensus       158 -------------------------------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--~~~~~~~L~  198 (280)
T PRK09687        158 -------------------------------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--NPDIREAFV  198 (280)
T ss_pred             -------------------------------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence                                                 01234556677788888888887776555211  125666777


Q ss_pred             HHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhh-cCCh
Q 003722          250 FILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIR-DPDR  327 (800)
Q Consensus       250 ~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~-~~d~  327 (800)
                      .+|.. +.+++--+...+..+  ..+. ..|++-..   ..|+. ++....+-|-.+.++.    .+.-|+.++. +.|.
T Consensus       199 ~~L~D~~~~VR~~A~~aLg~~--~~~~-av~~Li~~---L~~~~-~~~~a~~ALg~ig~~~----a~p~L~~l~~~~~d~  267 (280)
T PRK09687        199 AMLQDKNEEIRIEAIIGLALR--KDKR-VLSVLIKE---LKKGT-VGDLIIEAAGELGDKT----LLPVLDTLLYKFDDN  267 (280)
T ss_pred             HHhcCCChHHHHHHHHHHHcc--CChh-HHHHHHHH---HcCCc-hHHHHHHHHHhcCCHh----HHHHHHHHHhhCCCh
Confidence            77764 456766666665543  1222 22222222   12332 6677888888888864    4445555553 5677


Q ss_pred             hHHHHHHHHHH
Q 003722          328 RFAADTVAAIG  338 (800)
Q Consensus       328 ~f~~~aI~aIg  338 (800)
                      .++.+++.++.
T Consensus       268 ~v~~~a~~a~~  278 (280)
T PRK09687        268 EIITKAIDKLK  278 (280)
T ss_pred             hHHHHHHHHHh
Confidence            88888887764

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=97.39  E-value=0.05  Score=63.94  Aligned_cols=111  Identities=15%  Similarity=0.172  Sum_probs=83.9

Q ss_pred             cccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc
Q 003722            6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN   81 (800)
Q Consensus         6 v~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~----~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~   81 (800)
                      ...+.|-....+.+++.+++|.||.-|+.+|.++-+.....    ....+...+-.+|.|.+..|...|+.++..++...
T Consensus        71 ~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~  150 (503)
T PF10508_consen   71 PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP  150 (503)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence            34557888899999999999999999999999986654311    22446667777899999999999999999998654


Q ss_pred             ccc--h-hH-HHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 003722           82 FTL--I-GR-NYRNLCQILPDVEEWGQILLIEILLRYVV  116 (800)
Q Consensus        82 ~~L--i-h~-~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~  116 (800)
                      ..+  + .. ...+|.+.+...++=.++.+++++...+.
T Consensus       151 ~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~  189 (503)
T PF10508_consen  151 EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS  189 (503)
T ss_pred             hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence            222  2 22 25667777766688888888888777653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.16  Score=63.07  Aligned_cols=406  Identities=13%  Similarity=0.118  Sum_probs=224.8

Q ss_pred             hcCCCCchhhHHHHHHHHHHhhcC-chhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHh---CCCcccchhHHH-HHHHH
Q 003722           20 CARDPSVFVRKCAANALPKLHELR-QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASI---CPNNFTLIGRNY-RNLCQ   94 (800)
Q Consensus        20 ~l~D~sPYVRK~AA~AI~Kly~ld-pe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eI---cP~~~~Lih~~y-r~Lc~   94 (800)
                      ..+-+.|-|||+-|-.|+-|.+.+ | +.=++|...|-..+++.++.---+|+..|..+   .++...-.++-+ +-|.+
T Consensus        88 ~~~E~~~~vr~k~~dviAeia~~~l~-e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q  166 (1075)
T KOG2171|consen   88 IQSETEPSVRHKLADVIAEIARNDLP-EKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQ  166 (1075)
T ss_pred             HHhccchHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHH
Confidence            345567788888888888888763 4 35677777777788888888888888776654   344444223333 34445


Q ss_pred             hCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhhhcc
Q 003722           95 ILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEG  174 (800)
Q Consensus        95 ~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  174 (800)
                      .+.|.+-=-.+..++.+..|+....           .++                                ...+++.  
T Consensus       167 ~~~d~s~~vr~~a~rA~~a~~~~~~-----------~~~--------------------------------~~~~~~~--  201 (1075)
T KOG2171|consen  167 TMTDPSSPVRVAAVRALGAFAEYLE-----------NNK--------------------------------SEVDKFR--  201 (1075)
T ss_pred             hccCCcchHHHHHHHHHHHHHHHhc-----------cch--------------------------------HHHHHHH--
Confidence            5666555466666666666653110           000                                0000000  


Q ss_pred             cccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhc---CCH---HHHHHHHHHH
Q 003722          175 LGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM---SPK---EDVKRIVKPL  248 (800)
Q Consensus       175 ~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l---~p~---~~l~~~v~pL  248 (800)
                                                   .=+--+|+.+.+.++..+..+.-.+..++..+   .|+   ..+..++.--
T Consensus       202 -----------------------------~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~  252 (1075)
T KOG2171|consen  202 -----------------------------DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFS  252 (1075)
T ss_pred             -----------------------------HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence                                         00012455555556666654333333333322   221   2233333332


Q ss_pred             HHHhcC---CCcchHHHHHHHHHHHHhCCccccc---cccccee---------------------c---cCCchHHHHHH
Q 003722          249 LFILRS---SGASKYVVLCNIQVFAKALPHLFVP---HYEDFFV---------------------S---SSDSYQSKALK  298 (800)
Q Consensus       249 v~LL~s---~~ei~yvvL~~I~~L~~~~p~lF~~---~l~~Ffi---------------------~---~~Dp~~Ik~lK  298 (800)
                      +.+.++   ++.+|..+|..|..++...|.....   +....+.                     -   .++|..+....
T Consensus       253 l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~  332 (1075)
T KOG2171|consen  253 LEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQA  332 (1075)
T ss_pred             HHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHH
Confidence            333333   3668888888888877665532221   1111110                     0   12255666667


Q ss_pred             HHHHHhhcC-CCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH----HHHHHHHHHHHHhhhccccccCCCC
Q 003722          299 LEILSSIVT-ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIESGNG  373 (800)
Q Consensus       299 LeIL~~La~-e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a----~~~l~~LL~LL~~~~~~~~~~~~~~  373 (800)
                      ||.|..=-. +.=+..+++-+..++.+.+-..+.++..||+.+++--+...    +.++...+..|+.           .
T Consensus       333 lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D-----------p  401 (1075)
T KOG2171|consen  333 LDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND-----------P  401 (1075)
T ss_pred             HHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC-----------C
Confidence            776653333 44457888888999999999999999999999987665433    3444555554432           1


Q ss_pred             CCchhHh-HHHHHHHHHHh-CCcc----hHHHHHHHHHhhhccChhhHHH--H-HHhhhccccCCCCCCcchHHHHHHH-
Q 003722          374 EADVLIQ-SIISIKSIIKQ-DPSC----HEKVIIQLFRSLDSIKVPEARV--M-IIWMVGEYSSVGVKIPRMLTTVLKY-  443 (800)
Q Consensus       374 ~~~vv~E-~V~vi~~Il~~-~P~~----~~~~i~~L~~~ld~i~~p~Ara--s-iiWLlGEy~~~~~~ip~i~~dvLr~-  443 (800)
                      .. .|.. ++..|-++=.. .|+.    |+.+...|...+++-..+...+  + .+-=+.|+|..-...|| .+.++.. 
T Consensus       402 hp-rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~lm~~~  479 (1075)
T KOG2171|consen  402 HP-RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDGLMEKK  479 (1075)
T ss_pred             CH-HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHH
Confidence            22 4443 44455554322 2332    3444556666666655544322  2 12223455542212344 4455552 


Q ss_pred             HHhhhccCcHHHHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCcC
Q 003722          444 LAWCFKSEAVETKLQILNTTIKVLLCAKGG---DMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLC  513 (800)
Q Consensus       444 l~~~F~~E~~~VKlqILta~aKL~~~~p~e---~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~~~~  513 (800)
                      +.---......||-|++|+++-+..-....   -.+++-.++..+|..+..+....+|=...+-..++...++
T Consensus       480 l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG  552 (1075)
T KOG2171|consen  480 LLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG  552 (1075)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence            222223567889999999999887654321   1234444566677766655678888888777777766553

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.099  Score=61.48  Aligned_cols=413  Identities=15%  Similarity=0.138  Sum_probs=232.6

Q ss_pred             cccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCch---hhHHHHHHHHHHHhcCCCccHHHHHHHHHHH----
Q 003722            4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE---EITSAIEEIVGILLNDRSPGVVGAAAAAFAS----   76 (800)
Q Consensus         4 IRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe---~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~e----   76 (800)
                      +==.+++|++++-+|+.+....+.||-++++|+.-+-.=.-+   ...+.|+.++-.+|.|+-|.|-+-+--.+..    
T Consensus       385 vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~w  464 (885)
T KOG2023|consen  385 VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKW  464 (885)
T ss_pred             hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence            334678999999999999999999999999999887653211   1567899999999999999986543222222    


Q ss_pred             -hCCCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCC
Q 003722           77 -ICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIP  155 (800)
Q Consensus        77 -IcP~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~  155 (800)
                       ++..+-.++.|....|++.+.|-+-|-|-...-.++.+-..                                      
T Consensus       465 v~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~--------------------------------------  506 (885)
T KOG2023|consen  465 VVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE--------------------------------------  506 (885)
T ss_pred             HhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--------------------------------------
Confidence             23345566677777888888889999888777666554210                                      


Q ss_pred             CCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhh---hhhccCCChHHHHHHHHHH
Q 003722          156 SRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCT---SPLLWSHNSAVVLAAAGVH  232 (800)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~---~pLL~S~NsAVVlaaa~~~  232 (800)
                         .+++                                       +=|-+.-+|+.+   ...-|++|--+++-|+.++
T Consensus       507 ---A~~e---------------------------------------LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtl  544 (885)
T KOG2023|consen  507 ---AGEE---------------------------------------LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTL  544 (885)
T ss_pred             ---ccch---------------------------------------hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHH
Confidence               0111                                       112222333333   2234789999999999876


Q ss_pred             H-----hcCCHHHHHHHHHHHHH---HhcCCCcchHHHHHHHHHHHHhCCcccccccccceec---------------cC
Q 003722          233 W-----IMSPKEDVKRIVKPLLF---ILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS---------------SS  289 (800)
Q Consensus       233 ~-----~l~p~~~l~~~v~pLv~---LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~---------------~~  289 (800)
                      -     ++..+.+++.+..||+.   +|+.+.---|-.|.++..++..-..-|.||..-.|-|               ..
T Consensus       545 Adsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~  624 (885)
T KOG2023|consen  545 ADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQ  624 (885)
T ss_pred             HHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccC
Confidence            4     56678889999999984   4554333346677888888776655566653222211               12


Q ss_pred             CchH------HHHHHHHHHHhhcC--CCCHHH------HHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHH
Q 003722          290 DSYQ------SKALKLEILSSIVT--ESSISS------VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGL  355 (800)
Q Consensus       290 Dp~~------Ik~lKLeIL~~La~--e~Nv~~------Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~L  355 (800)
                      ||.+      .-...||++.-|+-  .+.++.      |++=|...+.|.-++++.-+..-+|.++...++-..-|+.-+
T Consensus       625 ~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~f  704 (885)
T KOG2023|consen  625 DPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADF  704 (885)
T ss_pred             CccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            2222      12234666665542  122221      445556677888889999999999998877554444445555


Q ss_pred             HHHHHhhhccccccCCCCCCchhHhHHHHHHHHHH-hCCcc---hHHHHHHHHHhhhccChhhH-H---HHHHhhhcccc
Q 003722          356 LALIRQELLTSDIESGNGEADVLIQSIISIKSIIK-QDPSC---HEKVIIQLFRSLDSIKVPEA-R---VMIIWMVGEYS  427 (800)
Q Consensus       356 L~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~-~~P~~---~~~~i~~L~~~ld~i~~p~A-r---asiiWLlGEy~  427 (800)
                      +.+|-.+.   +..++    .+..-++=.+-.|-. ..++.   ...++..|...+..-..+.. .   |--|=-+|-++
T Consensus       705 l~~lg~Nl---~~~~i----sv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~  777 (885)
T KOG2023|consen  705 LPILGANL---NPENI----SVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYIC  777 (885)
T ss_pred             HHHHhhcC---Chhhc----hHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccC
Confidence            55554321   00111    122333333333322 22222   23344555544442222211 1   11133344443


Q ss_pred             CCCCCCcchHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 003722          428 SVGVKIPRMLTTVLKYLAWCFKSE-AVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKK  506 (800)
Q Consensus       428 ~~~~~ip~i~~dvLr~l~~~F~~E-~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~  506 (800)
                      .. +..|. .+.+.|.-..+...- ..+.|-....-++++.-.+|...   +..+.-.+.-.|... |++ -|-.-++++
T Consensus       778 Pe-~vAp~-l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~v---v~~~~f~c~aiAsw~-np~-~~l~~~f~k  850 (885)
T KOG2023|consen  778 PE-EVAPH-LDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGV---VSSFIFICDAIASWS-NPE-DDLRDEFYK  850 (885)
T ss_pred             HH-hcchh-HHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhh---hhhhHHHHHHHhccc-ChH-HHHHHHHHH
Confidence            21 12232 334444332222221 34566666677777777777643   223333333444444 555 444456667


Q ss_pred             HccC
Q 003722          507 LFSH  510 (800)
Q Consensus       507 LL~~  510 (800)
                      +|..
T Consensus       851 iL~g  854 (885)
T KOG2023|consen  851 ILQG  854 (885)
T ss_pred             HHHH
Confidence            7754

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.061  Score=64.34  Aligned_cols=50  Identities=20%  Similarity=0.309  Sum_probs=43.0

Q ss_pred             eecccccCCCCeeEEEEecCCCccCCCceEEEEEEEEecCCCc-eeceEeeec
Q 003722          731 YTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSET-MSEVTLVDE  782 (800)
Q Consensus       731 ~~ll~~~~g~gl~~~y~f~~~~~~~~~~~v~v~~~~~N~s~~~-~~~i~~~~~  782 (800)
                      ++.+......||.+...|.++|.-  ++...+.++|+|.+.-+ ++.++....
T Consensus       747 ~~~~~~~dkssl~~~~~~~k~~~n--~~~t~i~~~~tn~s~~~~l~~F~~~aA  797 (866)
T KOG1062|consen  747 YPSIKAYDKSSLLVELSFTKGPSN--KKTTVITLTFTNLSPNTDLTDFHFQAA  797 (866)
T ss_pred             CCcceeeecccceeeeeeccCCCC--CceeEEEeeccCCCCCcchhhhccccc
Confidence            677777888999999999999974  77889999999999777 998887653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=97.17  E-value=0.09  Score=69.78  Aligned_cols=355  Identities=13%  Similarity=0.095  Sum_probs=218.9

Q ss_pred             HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc---ccc
Q 003722           13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTL   84 (800)
Q Consensus        13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~-----~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~---~~L   84 (800)
                      .+..+-+.+++.++-+|+.|+.++..+-.-++ ++.     ...++.|-.||...++.+.-.|+.++..+|-+.   -.+
T Consensus       447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i  525 (2102)
T PLN03200        447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC  525 (2102)
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            35666777888899999999999988876554 222     234556777899899999999999999998432   122


Q ss_pred             h--hHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchh
Q 003722           85 I--GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE  162 (800)
Q Consensus        85 i--h~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  162 (800)
                      +  +..+..|++.|..-+.=+|...+..|.......                                            
T Consensus       526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~--------------------------------------------  561 (2102)
T PLN03200        526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA--------------------------------------------  561 (2102)
T ss_pred             HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc--------------------------------------------
Confidence            3  245667788887776666666666665553200                                            


Q ss_pred             hhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh---cCCHH
Q 003722          163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI---MSPKE  239 (800)
Q Consensus       163 ~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~---l~p~~  239 (800)
                                                              |.+   .+..+..+|.+.++.+...+.+++-+   +....
T Consensus       562 ----------------------------------------d~~---~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~  598 (2102)
T PLN03200        562 ----------------------------------------DAA---TISQLTALLLGDLPESKVHVLDVLGHVLSVASLE  598 (2102)
T ss_pred             ----------------------------------------chh---HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence                                                    000   11334456777777766666665533   33322


Q ss_pred             H-H------HHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccc-----ccc-ccceeccCCchHHHHHHHHHHHhh
Q 003722          240 D-V------KRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV-----PHY-EDFFVSSSDSYQSKALKLEILSSI  305 (800)
Q Consensus       240 ~-l------~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~-----~~l-~~Ffi~~~Dp~~Ik~lKLeIL~~L  305 (800)
                      . +      ...+.+|+.||.+ +++++--+...|..++..+++...     .-+ .......+....+++.+---|..|
T Consensus       599 d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL  678 (2102)
T PLN03200        599 DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAAL  678 (2102)
T ss_pred             HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            2 1      2367788999976 467787788888888776654211     111 111122233344777777777777


Q ss_pred             c---CCCCHHHH-----HHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH----HHHHHHHHHHHHhhhccccccCCCC
Q 003722          306 V---TESSISSV-----FKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIESGNG  373 (800)
Q Consensus       306 a---~e~Nv~~I-----l~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a----~~~l~~LL~LL~~~~~~~~~~~~~~  373 (800)
                      +   ++.|...+     +.=|...+++.|.+++..+..+++.++..-....    ...+..|+++|+.+           
T Consensus       679 ~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-----------  747 (2102)
T PLN03200        679 SRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-----------  747 (2102)
T ss_pred             HhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-----------
Confidence            6   44454443     3346677788899999999999999986543222    34578899999853           


Q ss_pred             CCchhHhHHHHHHHHHHhCCcch--------HHHHHHHHHhhhccC-----hhhHHHHHHhhhcc-cc-C--------CC
Q 003722          374 EADVLIQSIISIKSIIKQDPSCH--------EKVIIQLFRSLDSIK-----VPEARVMIIWMVGE-YS-S--------VG  430 (800)
Q Consensus       374 ~~~vv~E~V~vi~~Il~~~P~~~--------~~~i~~L~~~ld~i~-----~p~ArasiiWLlGE-y~-~--------~~  430 (800)
                      ....-..+.-.+.+|.+..|..+        ..++.-|+.+|....     ..+|.-++.|+.-- ++ +        .+
T Consensus       748 ~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~  827 (2102)
T PLN03200        748 TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLA  827 (2102)
T ss_pred             ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHH
Confidence            11122335556778888887432        234667777776443     23466677777652 11 1        11


Q ss_pred             CCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcC
Q 003722          431 VKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK  471 (800)
Q Consensus       431 ~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p  471 (800)
                      + .|..    |..++.....+.+.++--.+-...+++--.|
T Consensus       828 e-~p~~----l~~l~~~l~~~~p~~~~kai~il~~~~~~~~  863 (2102)
T PLN03200        828 E-VPSS----LEPLVRCLAEGHPLVQDKAIEILSRLCRDQP  863 (2102)
T ss_pred             h-ccCc----hHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence            1 2333    3334444466777888777888888765444

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=97.16  E-value=0.21  Score=66.44  Aligned_cols=398  Identities=14%  Similarity=0.137  Sum_probs=207.0

Q ss_pred             HHHHHhhcCCCCchh-hHHHHHHHHHHhhcCc--h-hhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc---ccchh
Q 003722           14 LVAVGKCARDPSVFV-RKCAANALPKLHELRQ--E-EITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTLIG   86 (800)
Q Consensus        14 ~~aIkk~l~D~sPYV-RK~AA~AI~Kly~ldp--e-~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~---~~Lih   86 (800)
                      ..++-+.+++++|-+ ...++-|+..+|.---  . -...+-++.|-.||.-.+..+...|+.++..+|-+.   +..+-
T Consensus       364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi  443 (2102)
T PLN03200        364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG  443 (2102)
T ss_pred             HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            355667777776663 6666666655443210  0 011222334555777777899999999999999543   33222


Q ss_pred             --HHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhh
Q 003722           87 --RNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV  164 (800)
Q Consensus        87 --~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  164 (800)
                        .....|++.|..-++=.|...+..|...+....    .       ++                               
T Consensus       444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd----e-------nr-------------------------------  481 (2102)
T PLN03200        444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD----E-------SK-------------------------------  481 (2102)
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH----H-------HH-------------------------------
Confidence              246688888887777667777666665542110    0       00                               


Q ss_pred             hhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCC-HHH---
Q 003722          165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP-KED---  240 (800)
Q Consensus       165 ~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p-~~~---  240 (800)
                      ..    +++                              .   -.+..+..+|.+.+..+.-+|+.++.+++. ...   
T Consensus       482 ~a----Iie------------------------------a---GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~  524 (2102)
T PLN03200        482 WA----ITA------------------------------A---GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA  524 (2102)
T ss_pred             HH----HHH------------------------------C---CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence            00    000                              0   012233444555555555555555554432 111   


Q ss_pred             -HH--HHHHHHHHHhcC-CCcchHHHHHHHHHHH----------------------------------HhCCc--cccc-
Q 003722          241 -VK--RIVKPLLFILRS-SGASKYVVLCNIQVFA----------------------------------KALPH--LFVP-  279 (800)
Q Consensus       241 -l~--~~v~pLv~LL~s-~~ei~yvvL~~I~~L~----------------------------------~~~p~--lF~~-  279 (800)
                       +.  .++.||+.+|.+ ++++|-.++..|..|+                                  .....  .+.. 
T Consensus       525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g  604 (2102)
T PLN03200        525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG  604 (2102)
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence             11  234455555543 3444544444444443                                  21111  1110 


Q ss_pred             -----ccccce-eccCCchHHHHHHHHHHHhhcCCC--CHHH-----HHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc
Q 003722          280 -----HYEDFF-VSSSDSYQSKALKLEILSSIVTES--SISS-----VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK  346 (800)
Q Consensus       280 -----~l~~Ff-i~~~Dp~~Ik~lKLeIL~~La~e~--Nv~~-----Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~  346 (800)
                           =+..+. +..++...+|+....+|..+++.+  ++..     ++.-|..-+.+.+.+.++++..||+.++.....
T Consensus       605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~  684 (2102)
T PLN03200        605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE  684 (2102)
T ss_pred             hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence                 011111 123445567777777777776522  2222     233455556667778888888998888842221


Q ss_pred             ------cHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcc----hHHHHHHHHHhhhccChhhHH
Q 003722          347 ------MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSC----HEKVIIQLFRSLDSIKVPEAR  416 (800)
Q Consensus       347 ------~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~----~~~~i~~L~~~ld~i~~p~Ar  416 (800)
                            ....++..|++||+..           +..++.+++..|.+|++.....    ....+..|++.+.+= .+..|
T Consensus       685 ~q~~~~v~~GaV~pL~~LL~~~-----------d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k  752 (2102)
T PLN03200        685 NRKVSYAAEDAIKPLIKLAKSS-----------SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGK  752 (2102)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCC-----------ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHH
Confidence                  2234688899988742           2335666777777777543322    234477788877643 47788


Q ss_pred             HHHHhhhccccCCCCC---Ccc------hHHHHHHHHHhhhccCcHHH--HHHHHHHHHHH----HhhcCC-----CChH
Q 003722          417 VMIIWMVGEYSSVGVK---IPR------MLTTVLKYLAWCFKSEAVET--KLQILNTTIKV----LLCAKG-----GDMW  476 (800)
Q Consensus       417 asiiWLlGEy~~~~~~---ip~------i~~dvLr~l~~~F~~E~~~V--KlqILta~aKL----~~~~p~-----e~~~  476 (800)
                      ...+|.+.+-|.....   ++.      ++..++..| +.-..+...+  =+..|...+|.    -...|.     |...
T Consensus       753 ~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L-~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~  831 (2102)
T PLN03200        753 RNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLL-NSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPS  831 (2102)
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHH-hcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccC
Confidence            8888888776643210   000      011112211 2222333333  56677777774    011111     1112


Q ss_pred             HHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 003722          477 TITRLFSYLLELAECDLNYDVRDRARFFKKLF  508 (800)
Q Consensus       477 ~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL  508 (800)
                      .+..|.+.+     ...+|+|+|+|-....=|
T Consensus       832 ~l~~l~~~l-----~~~~p~~~~kai~il~~~  858 (2102)
T PLN03200        832 SLEPLVRCL-----AEGHPLVQDKAIEILSRL  858 (2102)
T ss_pred             chHHHHHHH-----HcCChHHHHHHHHHHHHH
Confidence            244454433     456999999998776544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.11  Score=61.57  Aligned_cols=240  Identities=15%  Similarity=0.153  Sum_probs=167.8

Q ss_pred             cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhH
Q 003722            8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGR   87 (800)
Q Consensus         8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~   87 (800)
                      .+.-+.+.-++|-++..+-|==--|.-|+. || .-| +...+|.+-+-+||+-+-|.|--=|+.+++.||-.--+-+.+
T Consensus       105 dvlmL~tn~~rkdl~S~n~ye~giAL~GLS-~f-vTp-dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~  181 (877)
T KOG1059|consen  105 DVLMLTTNLLRKDLNSSNVYEVGLALSGLS-CI-VTP-DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP  181 (877)
T ss_pred             cHHHHHHHHHHHHhccCccchhhheecccc-cc-cCc-hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh
Confidence            455667778888888666664444444444 22 245 556667767778999999999999999999999655566889


Q ss_pred             HHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhh
Q 003722           88 NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLV  167 (800)
Q Consensus        88 ~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  167 (800)
                      +|-||...|.|.|+=-|-..++++-..+|.+     |.                                          
T Consensus       182 ~FprL~EkLeDpDp~V~SAAV~VICELArKn-----Pk------------------------------------------  214 (877)
T KOG1059|consen  182 CFPRLVEKLEDPDPSVVSAAVSVICELARKN-----PQ------------------------------------------  214 (877)
T ss_pred             hHHHHHHhccCCCchHHHHHHHHHHHHHhhC-----Cc------------------------------------------
Confidence            9999999999999999999999988887521     10                                          


Q ss_pred             hhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCC--HHHHHHHH
Q 003722          168 SRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDVKRIV  245 (800)
Q Consensus       168 ~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p--~~~l~~~v  245 (800)
                               .|+                     .+.|++..||      ..|.|.=|+.-.+++|-.++|  |.--++++
T Consensus       215 ---------nyL---------------------~LAP~ffkll------ttSsNNWmLIKiiKLF~aLtplEPRLgKKLi  258 (877)
T KOG1059|consen  215 ---------NYL---------------------QLAPLFYKLL------VTSSNNWVLIKLLKLFAALTPLEPRLGKKLI  258 (877)
T ss_pred             ---------ccc---------------------cccHHHHHHH------hccCCCeehHHHHHHHhhccccCchhhhhhh
Confidence                     011                     1334443332      357888899999999999998  34567888


Q ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcC
Q 003722          246 KPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDP  325 (800)
Q Consensus       246 ~pLv~LL~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~  325 (800)
                      .||.-|+++.. ..-+...+|.+++..  ++-..+       .++..                 .++.-+..|..|+.+.
T Consensus       259 eplt~li~sT~-AmSLlYECvNTVVa~--s~s~g~-------~d~~a-----------------siqLCvqKLr~fieds  311 (877)
T KOG1059|consen  259 EPITELMESTV-AMSLLYECVNTVVAV--SMSSGM-------SDHSA-----------------SIQLCVQKLRIFIEDS  311 (877)
T ss_pred             hHHHHHHHhhH-HHHHHHHHHHHheee--hhccCC-------CCcHH-----------------HHHHHHHHHhhhhhcC
Confidence            99999997643 233456677776654  222221       11111                 1233356677777788


Q ss_pred             ChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722          326 DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR  360 (800)
Q Consensus       326 d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~  360 (800)
                      |+.++--..-|++.++..+|+....--+.++++|.
T Consensus       312 DqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~  346 (877)
T KOG1059|consen  312 DQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD  346 (877)
T ss_pred             CccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc
Confidence            88888888888888888888877777777777775

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.051  Score=64.53  Aligned_cols=64  Identities=27%  Similarity=0.232  Sum_probs=54.6

Q ss_pred             HHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722           12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC   78 (800)
Q Consensus        12 iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc   78 (800)
                      +|-.+++|-+.+|+-|||=...-=++|+  ..| +..+.|.+.+..+|.-+.+.|-.+|+.|+.+|.
T Consensus        99 Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~-ELlepl~p~IracleHrhsYVRrNAilaifsIy  162 (948)
T KOG1058|consen   99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEP-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIY  162 (948)
T ss_pred             HHHHHHhhhccCchHhhcchhhhhhhhc--CcH-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence            5678999999999999998877766665  345 667778888999999999999999999988885

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=96.82  E-value=0.0035  Score=57.26  Aligned_cols=102  Identities=20%  Similarity=0.080  Sum_probs=77.8

Q ss_pred             HHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc---ccch
Q 003722           13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTLI   85 (800)
Q Consensus        13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~----~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~---~~Li   85 (800)
                      ++..+.+.+.|.++++|+.|+.|+.++....|+.    .....++.+..+|+|+++.|...|+.++..++...   ...+
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   87 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV   87 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            5667778888999999999999999999876532    12245667777899999999999999999998543   2222


Q ss_pred             hH--HHHHHHHhCCCCChhhHHHHHHHHHhh
Q 003722           86 GR--NYRNLCQILPDVEEWGQILLIEILLRY  114 (800)
Q Consensus        86 h~--~yr~Lc~~L~d~dEWgQi~iL~lL~rY  114 (800)
                      ++  ....|.+.|.+.+..-+-..+.+|...
T Consensus        88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l  118 (120)
T cd00020          88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL  118 (120)
T ss_pred             HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            32  367788888888888777777777653

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking

Probab=96.81  E-value=0.039  Score=63.20  Aligned_cols=125  Identities=16%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             HHHHHHhCCcchHHHHHHHHHhhhccChhh----HHHHHHhhhccccCCCCCCcchHHHHHHHHHhh----------h--
Q 003722          385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPE----ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWC----------F--  448 (800)
Q Consensus       385 i~~Il~~~P~~~~~~i~~L~~~ld~i~~p~----ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~----------F--  448 (800)
                      +-.+.+++|......-..|.+.+.+.....    --..++|+||||+...-. ..+-.++++.+.+.          .  
T Consensus       292 ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d-~rct~~~i~~~fE~LE~llyE~~~~~~  370 (459)
T PF14764_consen  292 LLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYD-RRCTVEQINEFFEALEALLYEVTQSRR  370 (459)
T ss_pred             HHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccC-CccCHHHHHHHHHHHHHHHHHHhhccc
Confidence            445678889764444445555555443323    334678999999864321 22223333332221          1  


Q ss_pred             ------ccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHc-------cC--CChHHHhHHHHHHHHccCC
Q 003722          449 ------KSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAE-------CD--LNYDVRDRARFFKKLFSHN  511 (800)
Q Consensus       449 ------~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~-------~D--~n~DVRDRAr~y~~LL~~~  511 (800)
                            ......+-.-++|+.+|+..+.++-.. ++...+..+-..+.       ++  .+..|..||.+|.+||+.+
T Consensus       371 ~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~p-Rv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~P  447 (459)
T PF14764_consen  371 DPSASRPSSQPRLMTVLMTALAKLASRSQDLIP-RVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKMP  447 (459)
T ss_pred             cccccCCCCchhHHHHHHHHHHHHHHhCHhhhH-HHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcCc
Confidence                  123345667799999999999876433 33333333322111       33  3789999999999999864

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.064  Score=66.45  Aligned_cols=238  Identities=20%  Similarity=0.161  Sum_probs=150.8

Q ss_pred             ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh---hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCccc
Q 003722            7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT   83 (800)
Q Consensus         7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~---~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~   83 (800)
                      ..|.|.++..+.+.+...+++-||+|.+||.-+-.=.++.   +.+.+..++-..|+|.+|-|-.+|+.|+-.+--+=-.
T Consensus       343 ~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p  422 (1075)
T KOG2171|consen  343 KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP  422 (1075)
T ss_pred             hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH
Confidence            4688999999999999999999999999999887766643   5566777777788999999999999999888533212


Q ss_pred             chhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhh
Q 003722           84 LIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSEL  163 (800)
Q Consensus        84 Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  163 (800)
                      .+.++++..+-          ..++..+.                                                   
T Consensus       423 ~iqk~~~e~l~----------~aL~~~ld---------------------------------------------------  441 (1075)
T KOG2171|consen  423 EIQKKHHERLP----------PALIALLD---------------------------------------------------  441 (1075)
T ss_pred             HHHHHHHHhcc----------HHHHHHhc---------------------------------------------------
Confidence            23333322110          00000000                                                   


Q ss_pred             hhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhc---CCHH-
Q 003722          164 VNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM---SPKE-  239 (800)
Q Consensus       164 ~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l---~p~~-  239 (800)
                                                                            ...|+-|-..|+.+...+   .+.+ 
T Consensus       442 ------------------------------------------------------~~~~~rV~ahAa~al~nf~E~~~~~~  467 (1075)
T KOG2171|consen  442 ------------------------------------------------------STQNVRVQAHAAAALVNFSEECDKSI  467 (1075)
T ss_pred             ------------------------------------------------------ccCchHHHHHHHHHHHHHHHhCcHHH
Confidence                                                                  011222333333333322   2222 


Q ss_pred             ---HHHHHHHHHH-HHhcC-CCcchHHHHHHHHHHHHhCCcccccccc-------cceeccC--CchHHHHHHHHHHHhh
Q 003722          240 ---DVKRIVKPLL-FILRS-SGASKYVVLCNIQVFAKALPHLFVPHYE-------DFFVSSS--DSYQSKALKLEILSSI  305 (800)
Q Consensus       240 ---~l~~~v~pLv-~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~-------~Ffi~~~--Dp~~Ik~lKLeIL~~L  305 (800)
                         ++..+..+++ .|+.+ ++.+|--++..|..++...-..|.||+.       +|....+  |-.-.|-+.+|-+..+
T Consensus       468 l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli  547 (1075)
T KOG2171|consen  468 LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI  547 (1075)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence               3455555443 44443 5788999999999998887777887653       3333334  3457777778888888


Q ss_pred             cCCCC---HHHHHHHHHHh-------hhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHH
Q 003722          306 VTESS---ISSVFKEFQDY-------IRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI  359 (800)
Q Consensus       306 a~e~N---v~~Il~EL~~Y-------v~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL  359 (800)
                      +..-+   +...-.|+..-       ..+.|+-.....+.+++++|.-+-+....++...+..+
T Consensus       548 ~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl  611 (1075)
T KOG2171|consen  548 ARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPL  611 (1075)
T ss_pred             HHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHH
Confidence            76443   33333333321       23445567888999999999888776667776665544

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.67  E-value=0.18  Score=61.27  Aligned_cols=97  Identities=23%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             HHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHH-HH
Q 003722           12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRN-YR   90 (800)
Q Consensus        12 iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~-yr   90 (800)
                      +.+..++|-+.|++||+|=+|.-.+.++  -.+ +..+.+..-|.++|.|+++.|-.+|+.|+..+..-.-++.|.. .-
T Consensus        92 LavNti~kDl~d~N~~iR~~AlR~ls~l--~~~-el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~  168 (757)
T COG5096          92 LAVNTIQKDLQDPNEEIRGFALRTLSLL--RVK-ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI  168 (757)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHhc--ChH-HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence            5677899999999999999999988866  233 5667788889999999999999999999988864333444433 22


Q ss_pred             H-HHHhCCCCChhhHHHHHHHH
Q 003722           91 N-LCQILPDVEEWGQILLIEIL  111 (800)
Q Consensus        91 ~-Lc~~L~d~dEWgQi~iL~lL  111 (800)
                      . +-.++.|-|+=--.-.+-.|
T Consensus       169 ~~l~~l~~D~dP~Vi~nAl~sl  190 (757)
T COG5096         169 DILKELVADSDPIVIANALASL  190 (757)
T ss_pred             HHHHHHhhCCCchHHHHHHHHH
Confidence            2 22334466664433333333

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.64  E-value=0.0082  Score=52.49  Aligned_cols=84  Identities=30%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             HHHHhhc-CCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHHH
Q 003722           15 VAVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLC   93 (800)
Q Consensus        15 ~aIkk~l-~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc   93 (800)
                      ..+.+.+ +|++|+||..|+.++.++   ..    +...+.|..+++|.++.|..+|+.++..+-      -......|+
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~   68 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGEL---GD----PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALI   68 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCC---TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHc---CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHH
Confidence            3455555 899999999999999943   22    345666667889999999999999999883      133556777


Q ss_pred             HhCCCCChhh-HHHHHHHH
Q 003722           94 QILPDVEEWG-QILLIEIL  111 (800)
Q Consensus        94 ~~L~d~dEWg-Qi~iL~lL  111 (800)
                      +.+.+-+.|. +-..+..|
T Consensus        69 ~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   69 KLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHTC-SSHHHHHHHHHHH
T ss_pred             HHHcCCCcHHHHHHHHhhc
Confidence            7777766555 55555444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=1  Score=52.50  Aligned_cols=289  Identities=18%  Similarity=0.162  Sum_probs=174.8

Q ss_pred             hHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCch---hhHHHHHHHHHHHhcCCCccHHHHHHH---HHHHhCCCcc-
Q 003722           10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE---EITSAIEEIVGILLNDRSPGVVGAAAA---AFASICPNNF-   82 (800)
Q Consensus        10 ~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe---~~~~~L~~~l~~LL~D~dp~Vv~aAl~---Af~eIcP~~~-   82 (800)
                      .+-++++|-.|..|..--||=-|+-++..+-+....   ...+.+.+.+.++-.|++..|-++|=.   .+.+|.-++- 
T Consensus        82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~  161 (675)
T KOG0212|consen   82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS  161 (675)
T ss_pred             HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence            445677888999999999999888776555444321   256778888999999999999987743   2444443321 


Q ss_pred             cchhHHHHHHH-HhCCCCChhhHHHHHHHHHhhhhhcccccchh-hhhhhhhhccCCCcccccccccccccCCCCCCCcc
Q 003722           83 TLIGRNYRNLC-QILPDVEEWGQILLIEILLRYVVASHGLVKES-IMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD  160 (800)
Q Consensus        83 ~Lih~~yr~Lc-~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  160 (800)
                      .+--+.|--|+ ..|-..++...++++.-|...-..      |. .|+. +.                            
T Consensus       162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~------P~~~m~~-yl----------------------------  206 (675)
T KOG0212|consen  162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV------PDLEMIS-YL----------------------------  206 (675)
T ss_pred             ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC------CcHHHHh-cc----------------------------
Confidence            22112222222 335556777877777776543210      11 1111 00                            


Q ss_pred             hhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh------
Q 003722          161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI------  234 (800)
Q Consensus       161 ~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~------  234 (800)
                                                                    --|++-+...|.-.+..|.--+-.+...      
T Consensus       207 ----------------------------------------------~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~  240 (675)
T KOG0212|consen  207 ----------------------------------------------PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR  240 (675)
T ss_pred             ----------------------------------------------hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence                                                          0122222333333333333211111111      


Q ss_pred             cCCHH-HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCCcccccccccce-----eccCCch-HHHHHHHH---HHH
Q 003722          235 MSPKE-DVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFF-----VSSSDSY-QSKALKLE---ILS  303 (800)
Q Consensus       235 l~p~~-~l~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ff-----i~~~Dp~-~Ik~lKLe---IL~  303 (800)
                      -.|.. ...+.+..|+.-+. +.+++|-.+|..|..++...|..+-+++...+     |..+++. .||..+-.   .|.
T Consensus       241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~  320 (675)
T KOG0212|consen  241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL  320 (675)
T ss_pred             cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence            11222 45667777776664 56999999999999999999988888875433     2333343 56665543   356


Q ss_pred             hhcCCCCH------HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc----cHHHHHHHHHHHHHhhhccccccCCCC
Q 003722          304 SIVTESSI------SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK----MANTCVEGLLALIRQELLTSDIESGNG  373 (800)
Q Consensus       304 ~La~e~Nv------~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~----~a~~~l~~LL~LL~~~~~~~~~~~~~~  373 (800)
                      +++.+.--      ..|++=|..|+.+...+-+..+..-|..+-.+.|.    ..+.+..+|++-|+.           .
T Consensus       321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd-----------~  389 (675)
T KOG0212|consen  321 KLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD-----------R  389 (675)
T ss_pred             HHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC-----------c
Confidence            66654433      38999999999998888888888999888888886    334555566665542           1


Q ss_pred             CCchhHhHHHHHHHHHH
Q 003722          374 EADVLIQSIISIKSIIK  390 (800)
Q Consensus       374 ~~~vv~E~V~vi~~Il~  390 (800)
                      ...||-.++.++..|..
T Consensus       390 sd~vvl~~L~lla~i~~  406 (675)
T KOG0212|consen  390 SDEVVLLALSLLASICS  406 (675)
T ss_pred             hhHHHHHHHHHHHHHhc
Confidence            23355556666666654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.3  Score=57.64  Aligned_cols=74  Identities=12%  Similarity=0.106  Sum_probs=56.7

Q ss_pred             cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc
Q 003722            8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN   81 (800)
Q Consensus         8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~   81 (800)
                      .+..++-..+-+++.|.+|.+|-+.-+-|.-+....--..-+++.+.|..||.-.+..+.-.|+.|+..||.+.
T Consensus        86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs  159 (885)
T KOG2023|consen   86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDS  159 (885)
T ss_pred             HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhh
Confidence            45667777778899999999999888777776655321245677777888888888778888999999999775

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.50  E-value=2.7  Score=50.60  Aligned_cols=455  Identities=16%  Similarity=0.146  Sum_probs=238.1

Q ss_pred             HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc-CchhhHHHHHHHHHH---HhcCCCccHHHHHHHHHHHhCCCcccc--
Q 003722           11 PLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGI---LLNDRSPGVVGAAAAAFASICPNNFTL--   84 (800)
Q Consensus        11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l-dpe~~~~~L~~~l~~---LL~D~dp~Vv~aAl~Af~eIcP~~~~L--   84 (800)
                      --++..|.+|+.|.+-.||-.+|+|+.-++.. .| --.+++..+++-   =.+-+---++++-+.|.--+||..=.-  
T Consensus       552 ~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P-ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya  630 (1172)
T KOG0213|consen  552 KPLVKIIEHGLKDEQQKVRTITALALSALAEAATP-YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYA  630 (1172)
T ss_pred             HHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHH
Confidence            44678999999999999999999999999987 45 444455554443   234455567777788888899864111  


Q ss_pred             ---hhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchh-hh-------hh-hhhhccCCCccc----ccccccc
Q 003722           85 ---IGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKES-IM-------SS-LLCIESSHSEKD----VFDVNVA  148 (800)
Q Consensus        85 ---ih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~-~~-------f~-~~~~~~~~~~~~----~~~~~~~  148 (800)
                         .......|.+-....||=..-.+|.++.+.|- ..+ +.|. +.       |. .-+++. ..+..    --+.+..
T Consensus       631 ~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~-t~G-v~~~y~r~dilp~ff~~fw~rrm-A~drr~ykqlv~ttv~  707 (1172)
T KOG0213|consen  631 SYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCA-TDG-VEPAYIRFDILPEFFFSFWGRRM-ALDRRNYKQLVDTTVE  707 (1172)
T ss_pred             HHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhc-ccC-CCHHHHhhhhhHHHHhhhhhhhh-hccccchhhHHHHHHH
Confidence               12223345555566788888889999988874 222 2222 11       11 001100 00000    0000000


Q ss_pred             cccCCCCCCCcchhhhhhhhhhhhcccccccccCCCcccccccccc-------ccccCCCCCh-hHHHHHHhhhhhccCC
Q 003722          149 LEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNG-------ARFTSGKTND-DVKLLLQCTSPLLWSH  220 (800)
Q Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~-------~~~~~~~~d~-Dl~lLL~~~~pLL~S~  220 (800)
                      +-.+.+        ...++++...+    +.    |+...+.+...       ..--...+|. -.++|++.+.--||+.
T Consensus       708 ia~KvG--------~~~~v~R~v~~----lk----de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeq  771 (1172)
T KOG0213|consen  708 IAAKVG--------SDPIVSRVVLD----LK----DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQ  771 (1172)
T ss_pred             HHHHhC--------chHHHHHHhhh----hc----cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhc
Confidence            000000        00111111100    00    00000000000       0000012333 3467899998888876


Q ss_pred             Ch--HHHHHHHHHHHh-cCC--HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCC----cccccccccc-e--ec
Q 003722          221 NS--AVVLAAAGVHWI-MSP--KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP----HLFVPHYEDF-F--VS  287 (800)
Q Consensus       221 Ns--AVVlaaa~~~~~-l~p--~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p----~lF~~~l~~F-f--i~  287 (800)
                      ..  +|++-+..+... +..  ..++..++...+-.|++ ++.++.-+++.|..|+..-.    .-.-.|+... |  +-
T Consensus       772 tt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg  851 (1172)
T KOG0213|consen  772 TTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG  851 (1172)
T ss_pred             ccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC
Confidence            64  566655544332 222  23466677777777765 78999989888877764322    1122344322 2  11


Q ss_pred             cCCchHHHHHHHHHHHhhcCC-------CCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH--HHHHHH---H
Q 003722          288 SSDSYQSKALKLEILSSIVTE-------SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA--NTCVEG---L  355 (800)
Q Consensus       288 ~~Dp~~Ik~lKLeIL~~La~e-------~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a--~~~l~~---L  355 (800)
                      -.+|. +----|.-|+.++|-       .-+..|+.-|.--+++-...++...|.-+|++|.+-|+..  .--+++   |
T Consensus       852 eeypE-vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeL  930 (1172)
T KOG0213|consen  852 EEYPE-VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFEL  930 (1172)
T ss_pred             cccHH-HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHH
Confidence            23343 433344445555443       3578888888888888888899999999999999988632  112333   4


Q ss_pred             HHHHHhhhccccccCCCCCCchhH-hHHHHHHHHHHh-CCcchHHHHHHHHHhhhccChhhHH--H-HHHhhhccccCCC
Q 003722          356 LALIRQELLTSDIESGNGEADVLI-QSIISIKSIIKQ-DPSCHEKVIIQLFRSLDSIKVPEAR--V-MIIWMVGEYSSVG  430 (800)
Q Consensus       356 L~LL~~~~~~~~~~~~~~~~~vv~-E~V~vi~~Il~~-~P~~~~~~i~~L~~~ld~i~~p~Ar--a-siiWLlGEy~~~~  430 (800)
                      +++|..-            ...+. -++..+--|-+- .|   ..++..|...|.. ++-.-|  . ..|-|+||||..-
T Consensus       931 lelLkah------------kK~iRRaa~nTfG~IakaIGP---qdVLatLlnnLkv-qeRq~RvcTtvaIaIVaE~c~pF  994 (1172)
T KOG0213|consen  931 LELLKAH------------KKEIRRAAVNTFGYIAKAIGP---QDVLATLLNNLKV-QERQNRVCTTVAIAIVAETCGPF  994 (1172)
T ss_pred             HHHHHHH------------HHHHHHHHHhhhhHHHHhcCH---HHHHHHHHhcchH-HHHHhchhhhhhhhhhhhhcCch
Confidence            4444321            00111 112122111111 23   2344444444431 122222  2 2268999999632


Q ss_pred             CCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 003722          431 VKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH  510 (800)
Q Consensus       431 ~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~  510 (800)
                              .+|--+.+.|..-...||--+|.+++-+|-+-.+...+-+..+. =+|+=|..|.|+==|+-|--.-+=+..
T Consensus       995 --------tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~-PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen  995 --------TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVT-PLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             --------hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhh-HHHHHhhccccHHHHHHHHHHHHHHhc
Confidence                    23444556787777889999999998776544321111111111 134556677777777766655444443


Q ss_pred             C
Q 003722          511 N  511 (800)
Q Consensus       511 ~  511 (800)
                      +
T Consensus      1066 g 1066 (1172)
T KOG0213|consen 1066 G 1066 (1172)
T ss_pred             C
Confidence            3

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.29  E-value=0.072  Score=53.80  Aligned_cols=98  Identities=13%  Similarity=0.198  Sum_probs=82.2

Q ss_pred             CcchHHHHHHHHHHHHhCCcccccccccceeccCCc-hHHHHHHHHHHHhhcCCCCH---HHHHHHHHHhhhcCChhHHH
Q 003722          256 GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSI---SSVFKEFQDYIRDPDRRFAA  331 (800)
Q Consensus       256 ~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp-~~Ik~lKLeIL~~La~e~Nv---~~Il~EL~~Yv~~~d~~f~~  331 (800)
                      |.+|--++-.+.-|+.++|.++.+|...+|-+..|+ ..||+..|-+|+.|..++-+   ..++.++...+.|.|.+++.
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~   81 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRS   81 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHH
Confidence            567778888899999999999999999888776665 79999999999999988765   36668888899999999999


Q ss_pred             HHHHHHHHHHhh-CCccHHHHHH
Q 003722          332 DTVAAIGLCARK-LPKMANTCVE  353 (800)
Q Consensus       332 ~aI~aIg~lA~k-~p~~a~~~l~  353 (800)
                      .|...+..++.+ .|.....++-
T Consensus        82 ~A~~~~~e~~~~~~~~~i~~~~~  104 (178)
T PF12717_consen   82 LARSFFSELLKKRNPNIIYNNFP  104 (178)
T ss_pred             HHHHHHHHHHHhccchHHHHHHH
Confidence            999999999998 6665544333

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=96.29  E-value=0.33  Score=59.23  Aligned_cols=170  Identities=15%  Similarity=0.232  Sum_probs=109.5

Q ss_pred             ChhHHHHHHHHHHHHHhhCC-ccHHHHHHHHHHHHHhhhcccc---------c------cCCCC---CCchhHhHHHHHH
Q 003722          326 DRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSD---------I------ESGNG---EADVLIQSIISIK  386 (800)
Q Consensus       326 d~~f~~~aI~aIg~lA~k~p-~~a~~~l~~LL~LL~~~~~~~~---------~------~~~~~---~~~vv~E~V~vi~  386 (800)
                      +..+..+-+.++|.|++-+| ......+..|+.-+..+.++.+         .      ..+.+   ...+=+++|+.+.
T Consensus       877 ~~~l~~~y~v~~~~~~ql~P~ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTla  956 (1529)
T KOG0413|consen  877 ERLLCTAYNVAFSYSPQLVPHARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLA  956 (1529)
T ss_pred             HHHHHHHhhccccccceeccchhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHH
Confidence            33444444556778998888 3344445555443332222210         0      00000   0012234556677


Q ss_pred             HHHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Q 003722          387 SIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV  466 (800)
Q Consensus       387 ~Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL  466 (800)
                      .++-.+....++.+..|++-|+..+....|..++-.+|.+|...   .-+...++-.++.+..+-...||-|.+.++++|
T Consensus       957 kmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y---Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rL 1033 (1529)
T KOG0413|consen  957 KMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY---TAMTDRYIPMIAASLCDPSVIVRRQTIILLARL 1033 (1529)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH---HHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            77777777777788889998888888889999999999988421   013344455566777888899999999999999


Q ss_pred             Hhhc----CCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 003722          467 LLCA----KGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKK  506 (800)
Q Consensus       467 ~~~~----p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~  506 (800)
                      .-+.    .++      .++++++.+  -|.+.|||.=|-||..
T Consensus      1034 Lq~~~vKw~G~------Lf~Rf~l~l--~D~~edIr~~a~f~~~ 1069 (1529)
T KOG0413|consen 1034 LQFGIVKWNGE------LFIRFMLAL--LDANEDIRNDAKFYIS 1069 (1529)
T ss_pred             Hhhhhhhcchh------hHHHHHHHH--cccCHHHHHHHHHHHH
Confidence            6432    331      366666554  8999999999999965

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.21  E-value=0.0052  Score=44.04  Aligned_cols=29  Identities=34%  Similarity=0.374  Sum_probs=25.0

Q ss_pred             HHHHHHhhcCCCCchhhHHHHHHHHHHhh
Q 003722           13 VLVAVGKCARDPSVFVRKCAANALPKLHE   41 (800)
Q Consensus        13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~   41 (800)
                      +++.+.+++.|++|-||++|+.|+.++.+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            46778899999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=96.00  E-value=2.5  Score=51.73  Aligned_cols=360  Identities=14%  Similarity=0.165  Sum_probs=200.7

Q ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHhCCCc---ccchhH-HHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhh
Q 003722           52 EEIVGILLNDRSPGVVGAAAAAFASICPNN---FTLIGR-NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIM  127 (800)
Q Consensus        52 ~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~---~~Lih~-~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~  127 (800)
                      ...+..+++.++ .++..|+..|.++.-+.   ..+..+ .+..|++.|..-++=.++.++.+|.+.+...         
T Consensus       252 ~kk~~~l~~kQe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~---------  321 (708)
T PF05804_consen  252 LKKLQTLIRKQE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK---------  321 (708)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH---------
Confidence            345566666555 57778889898887542   222222 3456777776666656676777777765311         


Q ss_pred             hhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHH
Q 003722          128 SSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVK  207 (800)
Q Consensus       128 f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~  207 (800)
                         .|++                              .|..                                      .
T Consensus       322 ---ENK~------------------------------~m~~--------------------------------------~  330 (708)
T PF05804_consen  322 ---ENKD------------------------------EMAE--------------------------------------S  330 (708)
T ss_pred             ---HHHH------------------------------HHHH--------------------------------------c
Confidence               0110                              0100                                      0


Q ss_pred             HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH----HH--HHHHHHHHHhcCCCcchHHHHHHHHHHHHh--CCcccc-
Q 003722          208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED----VK--RIVKPLLFILRSSGASKYVVLCNIQVFAKA--LPHLFV-  278 (800)
Q Consensus       208 lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~----l~--~~v~pLv~LL~s~~ei~yvvL~~I~~L~~~--~p~lF~-  278 (800)
                      -++..+..+|++.|.-++-.+.+++++++-...    +-  .++.+|+.||.. ++.+.+++..+..|+..  ...+|. 
T Consensus       331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d-~~~~~val~iLy~LS~dd~~r~~f~~  409 (708)
T PF05804_consen  331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD-PNFREVALKILYNLSMDDEARSMFAY  409 (708)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC-CchHHHHHHHHHHhccCHhhHHHHhh
Confidence            145567778889999999999999999975332    22  256788888875 56778888888888753  223444 


Q ss_pred             ----cccccceeccCCchHHHHHHHHHHHhhc-CCCCHHHHHH-----HHHHhhhcCChhHHHHHHHHHHHHHhhCCccH
Q 003722          279 ----PHYEDFFVSSSDSYQSKALKLEILSSIV-TESSISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLPKMA  348 (800)
Q Consensus       279 ----~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La-~e~Nv~~Il~-----EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a  348 (800)
                          |.+-.+.....++ .+...-+-++..|+ ++.|++.+.+     -|...+....+.+.-+.||.|   ++.-+..-
T Consensus       410 TdcIp~L~~~Ll~~~~~-~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNi---S~h~~~~k  485 (708)
T PF05804_consen  410 TDCIPQLMQMLLENSEE-EVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNI---SQHDGPLK  485 (708)
T ss_pred             cchHHHHHHHHHhCCCc-cccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHH---HhcCchHH
Confidence                2332232222332 35545567777776 4667766654     233333332223333444444   44433333


Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHH------HHHHHHhhhc-cChhhHHHHHHh
Q 003722          349 NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKV------IIQLFRSLDS-IKVPEARVMIIW  421 (800)
Q Consensus       349 ~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~------i~~L~~~ld~-i~~p~ArasiiW  421 (800)
                      ...++++.+|+..-  ..     ..+..++.|++-.+.++-..+. ....+      +..|.+.+.. ..+++..--++=
T Consensus       486 ~~f~~~i~~L~~~v--~~-----~~~ee~~vE~LGiLaNL~~~~l-d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  486 ELFVDFIGDLAKIV--SS-----GDSEEFVVECLGILANLTIPDL-DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             HHHHHHHHHHHHHh--hc-----CCcHHHHHHHHHHHHhcccCCc-CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            34445555444320  00     1133478888776666633221 22333      3333333321 233444444455


Q ss_pred             hhccccCCCC---C--CcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHH---HHHHHHHHHHHccCC
Q 003722          422 MVGEYSSVGV---K--IPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI---TRLFSYLLELAECDL  493 (800)
Q Consensus       422 LlGEy~~~~~---~--ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l---~~L~q~vl~la~~D~  493 (800)
                      ++|--+..-.   .  -..+++.++..|  +=.+|+.+.-+||+-++-++..+.+.  .+.+   ..+..|++.+ ..|.
T Consensus       558 ~~gtla~d~~~A~lL~~sgli~~Li~LL--~~kqeDdE~VlQil~~f~~ll~h~~t--r~~ll~~~~~~~ylidL-~~d~  632 (708)
T PF05804_consen  558 LLGTLASDPECAPLLAKSGLIPTLIELL--NAKQEDDEIVLQILYVFYQLLFHEET--REVLLKETEIPAYLIDL-MHDK  632 (708)
T ss_pred             HHHHHHCCHHHHHHHHhCChHHHHHHHH--HhhCchHHHHHHHHHHHHHHHcChHH--HHHHHhccchHHHHHHH-hcCC
Confidence            5665432100   0  011233333333  22477888999999999999887543  1111   2366788887 5899


Q ss_pred             ChHHHhHHHHHHHHccC
Q 003722          494 NYDVRDRARFFKKLFSH  510 (800)
Q Consensus       494 n~DVRDRAr~y~~LL~~  510 (800)
                      |.+||.=|-.-.-++..
T Consensus       633 N~~ir~~~d~~Ldii~e  649 (708)
T PF05804_consen  633 NAEIRKVCDNALDIIAE  649 (708)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999988877777653

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.98  E-value=0.95  Score=54.18  Aligned_cols=327  Identities=17%  Similarity=0.162  Sum_probs=183.4

Q ss_pred             CcccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc---Cchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722            3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC   78 (800)
Q Consensus         3 sIRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l---dpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc   78 (800)
                      +.|+.--+|.++..|.+-++.++|-||-.||--|..+-..   ..++ ....+--+|..-|....|-|+|+.+.|+..|+
T Consensus       790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV  869 (1172)
T ss_pred             hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence            4678888899999999999999999999999887766554   3322 33445556667788899999999988888775


Q ss_pred             CCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCC
Q 003722           79 PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT  158 (800)
Q Consensus        79 P~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (800)
                      --                           +.+ ++             ||+                             
T Consensus       870 nv---------------------------igm-~k-------------m~p-----------------------------  879 (1172)
T KOG0213|consen  870 NV---------------------------IGM-TK-------------MTP-----------------------------  879 (1172)
T ss_pred             Hh---------------------------ccc-cc-------------cCC-----------------------------
Confidence            21                           000 00             000                             


Q ss_pred             cchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC--
Q 003722          159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--  236 (800)
Q Consensus       159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~--  236 (800)
                                                                    =...||-++.|.|+++..-|+-.|+.+.-.++  
T Consensus       880 ----------------------------------------------Pi~dllPrltPILknrheKVqen~IdLvg~Iadr  913 (1172)
T KOG0213|consen  880 ----------------------------------------------PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR  913 (1172)
T ss_pred             ----------------------------------------------ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc
Confidence                                                          01124555666777776666666665432221  


Q ss_pred             -C----HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCC
Q 003722          237 -P----KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESS  310 (800)
Q Consensus       237 -p----~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~N  310 (800)
                       |    ..+.-|+.--|+-+|.+ ..+++-.+...+--|+.                                    .--
T Consensus       914 gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak------------------------------------aIG  957 (1172)
T KOG0213|consen  914 GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK------------------------------------AIG  957 (1172)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH------------------------------------hcC
Confidence             1    22344455555555543 34555554444433332                                    222


Q ss_pred             HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHh-HHHHHHHHH
Q 003722          311 ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQ-SIISIKSII  389 (800)
Q Consensus       311 v~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E-~V~vi~~Il  389 (800)
                      -++||.-|..-++..+.+.+.-+-.||+.+|+.-...  .+|-.|+.   .        |-..+ ..|.+ .+..++.+.
T Consensus       958 PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF--tVLPalmn---e--------YrtPe-~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen  958 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF--TVLPALMN---E--------YRTPE-ANVQNGVLKALSFMF 1023 (1172)
T ss_pred             HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch--hhhHHHHh---h--------ccCch-hHHHHhHHHHHHHHH
Confidence            2344555555555556666666677888777754433  23333333   1        11111 12333 223455554


Q ss_pred             HhCCcchHHHHHHHHHhhhc-cC--h----hhHHHHHH-hhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHH
Q 003722          390 KQDPSCHEKVIIQLFRSLDS-IK--V----PEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILN  461 (800)
Q Consensus       390 ~~~P~~~~~~i~~L~~~ld~-i~--~----p~Arasii-WLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILt  461 (800)
                      +.--+.-.+.|..+...|++ +.  +    ..|-..|- -.+|-||...+   ..+-.+|+++-.+..+.++-|...++-
T Consensus      1024 eyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~e---da~iHLLN~iWpNIle~sPhviqa~~e 1100 (1172)
T KOG0213|consen 1024 EYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCE---DALIHLLNLIWPNILETSPHVIQAFDE 1100 (1172)
T ss_pred             HHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcH---HHHHHHHHHhhhhhcCCChHHHHHHHH
Confidence            43322222333333333322 11  1    12322222 35676654322   234567888888888888888888877


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHH
Q 003722          462 TTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFK  505 (800)
Q Consensus       462 a~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~  505 (800)
                      ++=-+-.....      ..+++|+++ +.+...--||+|-.-.+
T Consensus      1101 ~~eg~r~~Lg~------~~~~~Y~~Q-GLFHParkVR~~yw~vy 1137 (1172)
T KOG0213|consen 1101 AMEGLRVALGP------QAMLKYCLQ-GLFHPARKVRKRYWTVY 1137 (1172)
T ss_pred             HHHHHHHHhch------HHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence            76655443322      468888876 56888888999844333

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=95.97  E-value=0.29  Score=52.50  Aligned_cols=170  Identities=19%  Similarity=0.167  Sum_probs=113.5

Q ss_pred             hhcC-CCCchhhHHHHHHHHHHhhc--Cchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCC--cccchhHHHHHH
Q 003722           19 KCAR-DPSVFVRKCAANALPKLHEL--RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NFTLIGRNYRNL   92 (800)
Q Consensus        19 k~l~-D~sPYVRK~AA~AI~Kly~l--dpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~--~~~Lih~~yr~L   92 (800)
                      ..+. ...|+++..|..+++++-..  ..+- ..-..+.++..+|.+++|.|--.|+.|+..+..+  +-..|.-+..++
T Consensus        19 ~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~V   98 (254)
T PF04826_consen   19 CLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQV   98 (254)
T ss_pred             HHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence            3444 45799999999999986333  2211 1123466788999999999999999999988754  344566677888


Q ss_pred             HHhCCC--CChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhh
Q 003722           93 CQILPD--VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS  170 (800)
Q Consensus        93 c~~L~d--~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  170 (800)
                      |+.+..  +|.-.|...|++|+....+++.            .                               .+    
T Consensus        99 c~~~~s~~lns~~Q~agLrlL~nLtv~~~~------------~-------------------------------~~----  131 (254)
T PF04826_consen   99 CEETVSSPLNSEVQLAGLRLLTNLTVTNDY------------H-------------------------------HM----  131 (254)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHccCCCcch------------h-------------------------------hh----
Confidence            886554  5778899999999987632110            0                               00    


Q ss_pred             hhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH-H-----HHH
Q 003722          171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED-V-----KRI  244 (800)
Q Consensus       171 ~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~-l-----~~~  244 (800)
                                                         +...+..+.+||.+.|.-+-..+.+++++++.... .     .++
T Consensus       132 -----------------------------------l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~  176 (254)
T PF04826_consen  132 -----------------------------------LANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQV  176 (254)
T ss_pred             -----------------------------------HHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccc
Confidence                                               11123445578888888898999999999875322 2     224


Q ss_pred             HHHHHHHhcC--CCcchHHHHHHHHHHH
Q 003722          245 VKPLLFILRS--SGASKYVVLCNIQVFA  270 (800)
Q Consensus       245 v~pLv~LL~s--~~ei~yvvL~~I~~L~  270 (800)
                      ...++.|+.+  +.++-.-+|.-+.-|.
T Consensus       177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni~  204 (254)
T PF04826_consen  177 LSSFLSLFNSSESKENLLRVLTFFENIN  204 (254)
T ss_pred             hhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            5567788764  3555555555555553

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=95.79  E-value=1  Score=54.86  Aligned_cols=289  Identities=19%  Similarity=0.247  Sum_probs=158.0

Q ss_pred             ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc--Cchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc--
Q 003722            7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL--RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN--   81 (800)
Q Consensus         7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l--dpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~--   81 (800)
                      ..|+++++    +++...+.-+.=.|+-.+-|+--.  +.+. -...+++.|.+|+.-.+..++-.|+.++..+.=+.  
T Consensus       289 ~~iV~~Lv----~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~  364 (708)
T PF05804_consen  289 KGIVSLLV----KCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL  364 (708)
T ss_pred             cCCHHHHH----HHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence            34445444    555555666655555555554322  2211 23346667778887777888888999999886331  


Q ss_pred             -ccchh-HHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCc
Q 003722           82 -FTLIG-RNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTY  159 (800)
Q Consensus        82 -~~Lih-~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  159 (800)
                       -.++. +.+-+|+.+|.+ +.+.+ +++.+|...+...++  |  .||..                            +
T Consensus       365 R~~mV~~GlIPkLv~LL~d-~~~~~-val~iLy~LS~dd~~--r--~~f~~----------------------------T  410 (708)
T PF05804_consen  365 RSQMVSLGLIPKLVELLKD-PNFRE-VALKILYNLSMDDEA--R--SMFAY----------------------------T  410 (708)
T ss_pred             HHHHHHCCCcHHHHHHhCC-CchHH-HHHHHHHHhccCHhh--H--HHHhh----------------------------c
Confidence             22221 234577777765 34444 477777666532110  0  11110                            0


Q ss_pred             chhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHH
Q 003722          160 DSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE  239 (800)
Q Consensus       160 ~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~  239 (800)
                      +                 +                           +..+++.   ++.+.+..|-.+++.+.++|+...
T Consensus       411 d-----------------c---------------------------Ip~L~~~---Ll~~~~~~v~~eliaL~iNLa~~~  443 (708)
T PF05804_consen  411 D-----------------C---------------------------IPQLMQM---LLENSEEEVQLELIALLINLALNK  443 (708)
T ss_pred             c-----------------h---------------------------HHHHHHH---HHhCCCccccHHHHHHHHHHhcCH
Confidence            0                 0                           1112221   233444445455555555554321


Q ss_pred             ----HHH--HHHHHHHHH-hcCCCcchHHHHHHHHHHHHhCC---cccccccccce--eccCCchHHHHHHHHHHHhhcC
Q 003722          240 ----DVK--RIVKPLLFI-LRSSGASKYVVLCNIQVFAKALP---HLFVPHYEDFF--VSSSDSYQSKALKLEILSSIVT  307 (800)
Q Consensus       240 ----~l~--~~v~pLv~L-L~s~~ei~yvvL~~I~~L~~~~p---~lF~~~l~~Ff--i~~~Dp~~Ik~lKLeIL~~La~  307 (800)
                          .+-  +-.+.|+.. ++..   --+.+..|.-|++..+   ..|.+|+..+-  +...|+......-|-+|..|+.
T Consensus       444 rnaqlm~~g~gL~~L~~ra~~~~---D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~  520 (708)
T PF05804_consen  444 RNAQLMCEGNGLQSLMKRALKTR---DPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI  520 (708)
T ss_pred             HHHHHHHhcCcHHHHHHHHHhcc---cHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence                111  112233322 2221   1234455555555443   36777765432  4455666666677777777764


Q ss_pred             C-CCHHHHHHH--HHHhhh------cCChhHHHHHHHHHHHHHhhCCccHH-----HHHHHHHHHHHhhhccccccCCCC
Q 003722          308 E-SSISSVFKE--FQDYIR------DPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNG  373 (800)
Q Consensus       308 e-~Nv~~Il~E--L~~Yv~------~~d~~f~~~aI~aIg~lA~k~p~~a~-----~~l~~LL~LL~~~~~~~~~~~~~~  373 (800)
                      + -+...++++  |..|+.      ..+++++-++|..+|.+|. .+..+.     .++..|+.||+..         ..
T Consensus       521 ~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~k---------qe  590 (708)
T PF05804_consen  521 PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAK---------QE  590 (708)
T ss_pred             CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhh---------Cc
Confidence            4 378888876  444543      2466899999999999884 455444     3478899998742         11


Q ss_pred             CCchhHhHHHHHHHHHHhCC
Q 003722          374 EADVLIQSIISIKSIIKQDP  393 (800)
Q Consensus       374 ~~~vv~E~V~vi~~Il~~~P  393 (800)
                      +...|.|.+-++-+++...+
T Consensus       591 DdE~VlQil~~f~~ll~h~~  610 (708)
T PF05804_consen  591 DDEIVLQILYVFYQLLFHEE  610 (708)
T ss_pred             hHHHHHHHHHHHHHHHcChH
Confidence            34578888878888876643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.78  E-value=0.016  Score=46.75  Aligned_cols=52  Identities=33%  Similarity=0.226  Sum_probs=42.0

Q ss_pred             chhhHHHHHHHHHHhhcCchh---hHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Q 003722           26 VFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASI   77 (800)
Q Consensus        26 PYVRK~AA~AI~Kly~ldpe~---~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eI   77 (800)
                      |.||+.|+.||..+-...++.   ..+.+.+.|..+|.|.++.|-.+|+.|+-+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            679999999999766555432   5567788888899999999999999998654

...

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.73  E-value=0.48  Score=57.97  Aligned_cols=173  Identities=12%  Similarity=0.167  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHhhhcCCh--hHHHHHHHHHHHHHhhC----CccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHH
Q 003722          311 ISSVFKEFQDYIRDPDR--RFAADTVAAIGLCARKL----PKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS  384 (800)
Q Consensus       311 v~~Il~EL~~Yv~~~d~--~f~~~aI~aIg~lA~k~----p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~v  384 (800)
                      ++.|+..|..|+.-...  .+..+...-++..-.|+    |......+..++.-+.+.           ...+-.-+|..
T Consensus       129 ~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~-----------R~aVrKkai~~  197 (1233)
T KOG1824|consen  129 CKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSP-----------RLAVRKKAITA  197 (1233)
T ss_pred             HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccCh-----------HHHHHHHHHHH
Confidence            46677777777764322  24455556666655555    556656666666554321           12234446666


Q ss_pred             HHHHHHhC-CcchHHHHHHHHHhhhccChhhHHHHHHhhhccccC-----CCCCCcchHHHHHHHHHhhhccCcHHHHHH
Q 003722          385 IKSIIKQD-PSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS-----VGVKIPRMLTTVLKYLAWCFKSEAVETKLQ  458 (800)
Q Consensus       385 i~~Il~~~-P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~-----~~~~ip~i~~dvLr~l~~~F~~E~~~VKlq  458 (800)
                      |-++.-.. -+.+..++.+|.+-|..-..+.+....|-++|+-|.     .+.+.+.+.|-+..+.-+ -..++.+.|..
T Consensus       198 l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~-~e~~dDELrE~  276 (1233)
T KOG1824|consen  198 LGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNK-IEEDDDELREY  276 (1233)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcc-cccCcHHHHHH
Confidence            76665543 445778888888877655556666666777776542     123456666666665532 25567789999


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCCh
Q 003722          459 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNY  495 (800)
Q Consensus       459 ILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~  495 (800)
                      .|.++--+..++|.+..+....+.+-+++.-.||.||
T Consensus       277 ~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy  313 (1233)
T KOG1824|consen  277 CLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNY  313 (1233)
T ss_pred             HHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCC
Confidence            9998888888888765443444455555555899864

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=0.63  Score=54.26  Aligned_cols=241  Identities=18%  Similarity=0.142  Sum_probs=157.0

Q ss_pred             hhc-CCCCchhhHHHHHHHHHHhhcCchhh----HHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc-----ccchhHH
Q 003722           19 KCA-RDPSVFVRKCAANALPKLHELRQEEI----TSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN-----FTLIGRN   88 (800)
Q Consensus        19 k~l-~D~sPYVRK~AA~AI~Kly~ldpe~~----~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~-----~~Lih~~   88 (800)
                      +|+ ++.+|-+|..||-|+.++-.-..+..    ...-..++-.||...+.-|.--|+-|+-.|.-+.     +-+-+..
T Consensus       116 ~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~  195 (514)
T KOG0166|consen  116 EFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGA  195 (514)
T ss_pred             HHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcc
Confidence            444 58889999999999999988665321    1112345567899999999999999999997554     1223344


Q ss_pred             HHHHHHhCCCCChhhHHHHHHH----HHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhh
Q 003722           89 YRNLCQILPDVEEWGQILLIEI----LLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV  164 (800)
Q Consensus        89 yr~Lc~~L~d~dEWgQi~iL~l----L~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  164 (800)
                      .-.|+.+|...+.   +.+++-    |...||.+.    |.                                       
T Consensus       196 l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~----P~---------------------------------------  229 (514)
T KOG0166|consen  196 LDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN----PS---------------------------------------  229 (514)
T ss_pred             hHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC----CC---------------------------------------
Confidence            5555555555444   222222    222232110    00                                       


Q ss_pred             hhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC--CHHHHH
Q 003722          165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKEDVK  242 (800)
Q Consensus       165 ~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~--p~~~l~  242 (800)
                                |.                         . .-+.-+|..+.-||+|..+-|.--|+-++-|++  +.+.+.
T Consensus       230 ----------P~-------------------------~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq  273 (514)
T KOG0166|consen  230 ----------PP-------------------------F-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ  273 (514)
T ss_pred             ----------Cc-------------------------H-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence                      00                         0 124568889999999999999988888888876  343332


Q ss_pred             -----HHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCC--------cccccccccceeccCCchHHHHHHHHHHHhhcCC
Q 003722          243 -----RIVKPLLFILRS-SGASKYVVLCNIQVFAKALP--------HLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTE  308 (800)
Q Consensus       243 -----~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p--------~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e  308 (800)
                           .++.-|+.||.. ++.++--+|+.|--|+.-.-        .-.-|++..++- .+....||+..-=+|..++- 
T Consensus       274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~-~s~~~~ikkEAcW~iSNItA-  351 (514)
T KOG0166|consen  274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS-SSPKESIKKEACWTISNITA-  351 (514)
T ss_pred             HHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc-cCcchhHHHHHHHHHHHhhc-
Confidence                 355667888864 67888889988766553221        112234433321 12334599999999999875 


Q ss_pred             CCHH--------HHHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 003722          309 SSIS--------SVFKEFQDYIRDPDRRFAADTVAAIGLCARK  343 (800)
Q Consensus       309 ~Nv~--------~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k  343 (800)
                      .|..        .++..|.+-+...+.+.+++|.-||+.++..
T Consensus       352 G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  352 GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence            4432        3566788888888999999999999988764

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.26  E-value=14  Score=47.93  Aligned_cols=106  Identities=21%  Similarity=0.282  Sum_probs=58.9

Q ss_pred             CCcchH-HHHHHHHHHHHhCCcccc-ccccccee------ccCCchHHHHHHHHHHHhh----cCCCCH--HHHHHHHHH
Q 003722          255 SGASKY-VVLCNIQVFAKALPHLFV-PHYEDFFV------SSSDSYQSKALKLEILSSI----VTESSI--SSVFKEFQD  320 (800)
Q Consensus       255 ~~ei~y-vvL~~I~~L~~~~p~lF~-~~l~~Ffi------~~~Dp~~Ik~lKLeIL~~L----a~e~Nv--~~Il~EL~~  320 (800)
                      ..+.++ .-+..+..++..+|.+|. .|....+.      .......+-..-+.||-..    .+.++.  ..|=+-|..
T Consensus      1049 ~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~ 1128 (1692)
T KOG1020|consen 1049 ESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLK 1128 (1692)
T ss_pred             cchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence            345544 456678889999999998 56544432      1112223333334444332    222221  122233444


Q ss_pred             hhhcCChhHHHHHHHHHHHHHhhCC---ccHHHHHHHHHHHHH
Q 003722          321 YIRDPDRRFAADTVAAIGLCARKLP---KMANTCVEGLLALIR  360 (800)
Q Consensus       321 Yv~~~d~~f~~~aI~aIg~lA~k~p---~~a~~~l~~LL~LL~  360 (800)
                      -+.......+..+|-++|.+|-|+-   ..+..|+..+++.|.
T Consensus      1129 ~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le 1171 (1692)
T KOG1020|consen 1129 RIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLE 1171 (1692)
T ss_pred             HHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence            4455566677788888888888653   455566666666664

>TIGR02270 conserved hypothetical protein

Probab=95.20  E-value=1  Score=51.63  Aligned_cols=225  Identities=14%  Similarity=0.053  Sum_probs=144.2

Q ss_pred             HHHHHHHHhhc-CCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHH
Q 003722           11 PLVLVAVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNY   89 (800)
Q Consensus        11 ~iv~~aIkk~l-~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~y   89 (800)
                      |-.+..+...+ .|.++-||..|+.++...   +.    +...+.+...|.|.++.|-.+++.||-+|-+..      ..
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~------a~  119 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQ---ED----ALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ------AE  119 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhcc---CC----hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH------HH
Confidence            44455555566 588999999988888522   22    122344555788999999999999999986554      44


Q ss_pred             HHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhh
Q 003722           90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSR  169 (800)
Q Consensus        90 r~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  169 (800)
                      ..|+..|.+-+++.+..++..+..-..      +|                                             
T Consensus       120 ~~L~~~L~~~~p~vR~aal~al~~r~~------~~---------------------------------------------  148 (410)
T TIGR02270       120 PWLEPLLAASEPPGRAIGLAALGAHRH------DP---------------------------------------------  148 (410)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhcc------Ch---------------------------------------------
Confidence            578888999999999888877765210      00                                             


Q ss_pred             hhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003722          170 SYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL  249 (800)
Q Consensus       170 ~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv  249 (800)
                                                              ...+.++|++.++.|--++++++-.+.....    ...|.
T Consensus       149 ----------------------------------------~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a----~~~L~  184 (410)
T TIGR02270       149 ----------------------------------------GPALEAALTHEDALVRAAALRALGELPRRLS----ESTLR  184 (410)
T ss_pred             ----------------------------------------HHHHHHHhcCCCHHHHHHHHHHHHhhccccc----hHHHH
Confidence                                                    0235567889999999999999877765433    33455


Q ss_pred             HHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChh
Q 003722          250 FILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR  328 (800)
Q Consensus       250 ~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~  328 (800)
                      ..+.+ +++++..++..+..+-.  +.... .+..|+-...-|  ....-..+|...-++    .++.-|...+.+..  
T Consensus       185 ~al~d~~~~VR~aA~~al~~lG~--~~A~~-~l~~~~~~~g~~--~~~~l~~~lal~~~~----~a~~~L~~ll~d~~--  253 (410)
T TIGR02270       185 LYLRDSDPEVRFAALEAGLLAGS--RLAWG-VCRRFQVLEGGP--HRQRLLVLLAVAGGP----DAQAWLRELLQAAA--  253 (410)
T ss_pred             HHHcCCCHHHHHHHHHHHHHcCC--HhHHH-HHHHHHhccCcc--HHHHHHHHHHhCCch----hHHHHHHHHhcChh--
Confidence            55654 68999999988866522  33332 233344322222  333333344443222    66666777766544  


Q ss_pred             HHHHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Q 003722          329 FAADTVAAIGLCARKLPKMANTCVEGLLALIR  360 (800)
Q Consensus       329 f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~  360 (800)
                      +...++.++|.+..  |.    .+.+|+.++.
T Consensus       254 vr~~a~~AlG~lg~--p~----av~~L~~~l~  279 (410)
T TIGR02270       254 TRREALRAVGLVGD--VE----AAPWCLEAMR  279 (410)
T ss_pred             hHHHHHHHHHHcCC--cc----hHHHHHHHhc
Confidence            78888999997653  33    4555666554

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.06  E-value=0.052  Score=49.68  Aligned_cols=66  Identities=26%  Similarity=0.227  Sum_probs=54.7

Q ss_pred             ccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh---hHHHHHHHHHHHhcCCCccHHHHH
Q 003722            5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAA   70 (800)
Q Consensus         5 Rv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~---~~~~L~~~l~~LL~D~dp~Vv~aA   70 (800)
                      ++..-.+-++.+|-+|+.|.++=||-.|+.|+..+-+...++   ...++.+.|.+++.|.++.|-.+|
T Consensus        20 ~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a   88 (97)
T PF12755_consen   20 DISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA   88 (97)
T ss_pred             hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence            355667788899999999999999999999999988876544   345667777889999999998877

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.93  E-value=7.7  Score=46.38  Aligned_cols=68  Identities=15%  Similarity=0.062  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHHHHhCCCCChhhHHHHHHHHHhhh
Q 003722           47 ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYV  115 (800)
Q Consensus        47 ~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~  115 (800)
                      +.+.+..-+..+.+|.|+.|-.+|+-++..+-. .+.|-.-.|.+.|+.|.|-+|=-....++++.-|+
T Consensus       195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g  262 (823)
T KOG2259|consen  195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWG  262 (823)
T ss_pred             cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            445556546668899999999999999998864 66666667999999999999988999999998887

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.86  E-value=5.1  Score=47.41  Aligned_cols=460  Identities=17%  Similarity=0.115  Sum_probs=229.4

Q ss_pred             chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc-CchhhHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhCC----C
Q 003722            9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILL---NDRSPGVVGAAAAAFASICP----N   80 (800)
Q Consensus         9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l-dpe~~~~~L~~~l~~LL---~D~dp~Vv~aAl~Af~eIcP----~   80 (800)
                      =+..++.+|++|+.|.+-+||--+|+|+.-++.+ .| --.+++.+++.-|-   .-+---++.+-+.|.--|.|    +
T Consensus       355 hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~P-ygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~pe  433 (975)
T COG5181         355 HLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGP-YGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPE  433 (975)
T ss_pred             hhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChH
Confidence            3456789999999999999999999999999987 56 45566666655332   23334455555555544443    2


Q ss_pred             cc-cchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchh--------hhhhhhhhccCCCccccccccccccc
Q 003722           81 NF-TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKES--------IMSSLLCIESSHSEKDVFDVNVALED  151 (800)
Q Consensus        81 ~~-~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~--------~~f~~~~~~~~~~~~~~~~~~~~l~~  151 (800)
                      -. .....|.+-+.+.+...||=+.-.++-++.......  =..|.        +.|...-.+++..+.     -  ..+
T Consensus       434 Ya~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~--~~tp~~lr~~v~pefF~~fw~rr~A~dr-----~--~~k  504 (975)
T COG5181         434 YACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVG--TDTPWKLRDQVSPEFFSPFWRRRSAGDR-----R--SYK  504 (975)
T ss_pred             hhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccC--CCCHHHHHHhhcHHhhchHHHhhhcccc-----c--ccc
Confidence            11 112344555556666777777666666655543211  12222        122211111000000     0  001


Q ss_pred             CCCCCCCcchhhhhhhhh-hhhcccccccccCCCccccccccccc-------cccCCCCCh-hHHHHHHhhhhhccCCCh
Q 003722          152 NGIPSRTYDSELVNLVSR-SYIEGLGEYLTRSSDTNARSSDLNGA-------RFTSGKTND-DVKLLLQCTSPLLWSHNS  222 (800)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~-~~~~~~de~~~~~~~~~~~~~~~~~~-------~~~~~~~d~-Dl~lLL~~~~pLL~S~Ns  222 (800)
                      |++-   +....+.+..- ..++.   .+++.+|...++.+.+..       .-....+|+ -.++|++++..-+|+...
T Consensus       505 ~v~~---ttvilAk~~g~~~v~~k---il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~  578 (975)
T COG5181         505 QVVL---TTVILAKMGGDPRVSRK---ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT  578 (975)
T ss_pred             eeeh---hHHHHHHHcCChHHHHH---HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc
Confidence            1100   00111222110 00000   011122222222111110       000112343 346788988888886654


Q ss_pred             --HHHHHHHHHHHh-cC--CHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHH---hCCc--ccccccccceec-cCC
Q 003722          223 --AVVLAAAGVHWI-MS--PKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAK---ALPH--LFVPHYEDFFVS-SSD  290 (800)
Q Consensus       223 --AVVlaaa~~~~~-l~--p~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~---~~p~--lF~~~l~~Ffi~-~~D  290 (800)
                        ++++-|..+... +.  ....+..++...+.+|++ +|+++.-+++.+..|+.   .+.+  .....=...|-. -.|
T Consensus       579 t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~  658 (975)
T COG5181         579 TVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGED  658 (975)
T ss_pred             cccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcc
Confidence              566654433221 11  123466777788888876 68988887776655543   2221  111111122211 122


Q ss_pred             chHHHHHHHHHHHhhcC---CC----CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH---HHHHHH---HHH
Q 003722          291 SYQSKALKLEILSSIVT---ES----SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA---NTCVEG---LLA  357 (800)
Q Consensus       291 p~~Ik~lKLeIL~~La~---e~----Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a---~~~l~~---LL~  357 (800)
                      -+.+----|.-++.+.+   -+    -+..|+.-|.--+++-...++...|.-+|.+|.+-|+.+   +| +++   |++
T Consensus       659 ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW-MRIcfeLvd  737 (975)
T COG5181         659 YPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW-MRICFELVD  737 (975)
T ss_pred             cHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH-HHHHHHHHH
Confidence            22233333444444443   33    567888888888888888899999999999999988633   23 333   344


Q ss_pred             HHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhccChhhHH--H-HHHhhhccccCCCCCCc
Q 003722          358 LIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEAR--V-MIIWMVGEYSSVGVKIP  434 (800)
Q Consensus       358 LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i~~p~Ar--a-siiWLlGEy~~~~~~ip  434 (800)
                      +|..-   ...  +-+   -..+.+-.|..+|  .|   ..++..|...|+. ++-.-|  . ..|-|+||||..-    
T Consensus       738 ~Lks~---nKe--iRR---~A~~tfG~Is~ai--GP---qdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cgpf----  799 (975)
T COG5181         738 SLKSW---NKE--IRR---NATETFGCISRAI--GP---QDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCGPF----  799 (975)
T ss_pred             HHHHh---hHH--HHH---hhhhhhhhHHhhc--CH---HHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcCch----
Confidence            44320   000  000   0011111111111  22   2344455544432 122212  2 2368999999632    


Q ss_pred             chHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 003722          435 RMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF  508 (800)
Q Consensus       435 ~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL  508 (800)
                          .++-.+...|..-...||--+|.+++-+|-+-.+...+-+.-+. -+|+-|..|.|+=-|+-|--.-+=|
T Consensus       800 ----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~it-PlleDAltDrD~vhRqta~nvI~Hl  868 (975)
T COG5181         800 ----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSIT-PLLEDALTDRDPVHRQTAMNVIRHL  868 (975)
T ss_pred             ----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-HHHHhhhcccchHHHHHHHHHHHHH
Confidence                23334555788777889999999998777544321111111111 1345567788877777776544433

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.80  E-value=4.7  Score=48.11  Aligned_cols=90  Identities=20%  Similarity=0.131  Sum_probs=68.9

Q ss_pred             cchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHH---HHhCC-----
Q 003722            8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAF---ASICP-----   79 (800)
Q Consensus         8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af---~eIcP-----   79 (800)
                      -.-+.+...+-....|..+-||+.|+.|+..+..-.. -. ..+.....+++.|.+-.|-.+|+.++   -..||     
T Consensus       194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~-~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~  271 (823)
T KOG2259|consen  194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LS-KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER  271 (823)
T ss_pred             ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc-cc-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            3445666678888999999999999999999887322 22 34555667799999999999997754   45674     


Q ss_pred             --CcccchhHHHHHHHHhCCCC
Q 003722           80 --NNFTLIGRNYRNLCQILPDV   99 (800)
Q Consensus        80 --~~~~Lih~~yr~Lc~~L~d~   99 (800)
                        ++..+.-..|+++|+.+.|.
T Consensus       272 e~~e~kl~D~aF~~vC~~v~D~  293 (823)
T KOG2259|consen  272 ESEEEKLKDAAFSSVCRAVRDR  293 (823)
T ss_pred             hhhhhhhHHHHHHHHHHHHhcC
Confidence              34677888999999999873

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=12  Score=44.19  Aligned_cols=106  Identities=15%  Similarity=0.192  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHhhhccChhhHHHHHH-hhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCC
Q 003722          396 HEKVIIQLFRSLDSIKVPEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGD  474 (800)
Q Consensus       396 ~~~~i~~L~~~ld~i~~p~Arasii-WLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~  474 (800)
                      +..++.-|.+++..- ..++|.+++ ||+-=|......+-.....++.-+.+...+-+.+|=++.|.+.+-+......  
T Consensus       334 ~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~--  410 (675)
T KOG0212|consen  334 YGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS--  410 (675)
T ss_pred             hHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc--
Confidence            345666666666542 345666655 9988775432222223456777788888999999999999999988654322  


Q ss_pred             hHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 003722          475 MWTITRLFSYLLELAECDLNYDVRDRARFFKK  506 (800)
Q Consensus       475 ~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~  506 (800)
                      . ...++++-+|++-+.| .-=++.|+-+.-|
T Consensus       411 ~-~~~~fl~sLL~~f~e~-~~~l~~Rg~lIIR  440 (675)
T KOG0212|consen  411 P-NLRKFLLSLLEMFKED-TKLLEVRGNLIIR  440 (675)
T ss_pred             c-cHHHHHHHHHHHHhhh-hHHHHhhhhHHHH
Confidence            1 2456677777765554 3446666655433

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=94.65  E-value=7  Score=45.17  Aligned_cols=245  Identities=11%  Similarity=0.091  Sum_probs=120.6

Q ss_pred             HHHHHHhhhhhccCC-ChHHHHHHHHHHHhc---CC-HHHH--HHHHHHHHHHhcCC---CcchHHHHHHHHHHHHhCCc
Q 003722          206 VKLLLQCTSPLLWSH-NSAVVLAAAGVHWIM---SP-KEDV--KRIVKPLLFILRSS---GASKYVVLCNIQVFAKALPH  275 (800)
Q Consensus       206 l~lLL~~~~pLL~S~-NsAVVlaaa~~~~~l---~p-~~~l--~~~v~pLv~LL~s~---~ei~yvvL~~I~~L~~~~p~  275 (800)
                      +..+++.+...|++. ++..+.-|++++-.+   .+ ...+  .+.+++|+.+|+..   ..++|=+|-++=.++-..+ 
T Consensus       141 l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-  219 (429)
T cd00256         141 LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-  219 (429)
T ss_pred             HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-
Confidence            344556666666643 233333333444332   21 1111  23567888888753   3678888777766653222 


Q ss_pred             ccccccc--cceecc----CC--chHHHHHHHHHHHhhcCCCC-------H-HHHHH-HHHHhh------hcCChhHHHH
Q 003722          276 LFVPHYE--DFFVSS----SD--SYQSKALKLEILSSIVTESS-------I-SSVFK-EFQDYI------RDPDRRFAAD  332 (800)
Q Consensus       276 lF~~~l~--~Ffi~~----~D--p~~Ik~lKLeIL~~La~e~N-------v-~~Il~-EL~~Yv------~~~d~~f~~~  332 (800)
                       ......  .++...    .+  -.-|-|..+-+|..|.+...       + ..++. .+...+      +-.|.++..+
T Consensus       220 -~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~ed  298 (429)
T cd00256         220 -AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDD  298 (429)
T ss_pred             -HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHH
Confidence             111111  111111    11  23566677778888887431       1 12222 222222      2356666655


Q ss_pred             HHHHHHHHHhhCCc--cHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhcc
Q 003722          333 TVAAIGLCARKLPK--MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSI  410 (800)
Q Consensus       333 aI~aIg~lA~k~p~--~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i  410 (800)
                      .-.--..+..++..  ..+.|..   ++ ..+.+.-...|.+  +.+=.|-+.   .+    .+..-+++++|++.++.-
T Consensus       299 l~~L~e~L~~~~k~ltsfD~Y~~---El-~sg~L~WSp~H~s--e~FW~EN~~---kf----~~~~~~llk~L~~iL~~s  365 (429)
T cd00256         299 LKFLTEELKNSVQDLSSFDEYKS---EL-RSGRLHWSPVHKS--EKFWRENAD---RL----NEKNYELLKILIHLLETS  365 (429)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHH---HH-hcCCccCCCCCCC--chHHHHHHH---HH----HhcchHHHHHHHHHHhcC
Confidence            44433334433322  1122221   11 1111111223432  223233222   11    122246788999988777


Q ss_pred             ChhhHHHHHHhhhccccCCCCCCcchH------HHHHHHHHhhhccCcHHHHHHHHHHHHHHHhh
Q 003722          411 KVPEARVMIIWMVGEYSSVGVKIPRML------TTVLKYLAWCFKSEAVETKLQILNTTIKVLLC  469 (800)
Q Consensus       411 ~~p~ArasiiWLlGEy~~~~~~ip~i~------~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~  469 (800)
                      .+|...|....=||||+...+.--.++      ..+++    -...+.++||.+.|.+.-|+.++
T Consensus       366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~----Lm~h~d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMR----LLNHEDPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHH----HhcCCCHHHHHHHHHHHHHHHHh
Confidence            788888777899999986432111111      12222    23467899999999999999764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=94.63  E-value=7.1  Score=46.10  Aligned_cols=291  Identities=16%  Similarity=0.131  Sum_probs=163.3

Q ss_pred             HHHHhhhhhccCCChHHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCc---c
Q 003722          208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDVK-----RIVKPLLFILRS-SGASKYVVLCNIQVFAKALPH---L  276 (800)
Q Consensus       208 lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p--~~~l~-----~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~---l  276 (800)
                      .+...+...|+|.++.|..-+++.+-.+..  ...+.     .+...++.+|.. +.++.-.+...|..|+...+.   +
T Consensus        77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l  156 (503)
T PF10508_consen   77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL  156 (503)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence            344556677889999999888887655532  22122     244445566764 467888888888888765442   3


Q ss_pred             cccc----cccceeccCCchHHHHHHHHHHHhhcCCCC--HH---H--HHHHHHHhhhcCChhHHHHHHHHHHHHHhhCC
Q 003722          277 FVPH----YEDFFVSSSDSYQSKALKLEILSSIVTESS--IS---S--VFKEFQDYIRDPDRRFAADTVAAIGLCARKLP  345 (800)
Q Consensus       277 F~~~----l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~N--v~---~--Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p  345 (800)
                      |.+.    ++...  ......+|.+-++++..++..+.  .+   .  ++..+...+.+.|.=+...++..++.+|. .+
T Consensus       157 ~~~~~~~~L~~l~--~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~  233 (503)
T PF10508_consen  157 FDSNLLSKLKSLM--SQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TP  233 (503)
T ss_pred             hCcchHHHHHHHH--hccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-Ch
Confidence            4433    33332  22133589999999999986542  11   1  66777778888555566678899999998 45


Q ss_pred             ccHH-----HHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchH----HHHHHHHHhhhccChhhHH
Q 003722          346 KMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE----KVIIQLFRSLDSIKVPEAR  416 (800)
Q Consensus       346 ~~a~-----~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~----~~i~~L~~~ld~i~~p~Ar  416 (800)
                      ....     .+++.|.+++....  .+  . ......+.-.+..+..+....|....    ..+..|.+.++. .++.-+
T Consensus       234 ~g~~yL~~~gi~~~L~~~l~~~~--~d--p-~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s-~d~~~~  307 (503)
T PF10508_consen  234 HGLQYLEQQGIFDKLSNLLQDSE--ED--P-RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES-QDPTIR  307 (503)
T ss_pred             hHHHHHHhCCHHHHHHHHHhccc--cC--C-cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC-CChhHH
Confidence            4333     34556777665421  01  0 00111233334456666665555432    333344433332 244444


Q ss_pred             HHHHhhhccccCCCC-------CCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH------
Q 003722          417 VMIIWMVGEYSSVGV-------KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFS------  483 (800)
Q Consensus       417 asiiWLlGEy~~~~~-------~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q------  483 (800)
                      .+.+=-+|-.|...+       .-+..+..+++.+.......+.++|.-.|++.+-++-..+....+.+..+.+      
T Consensus       308 ~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~  387 (503)
T PF10508_consen  308 EVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESL  387 (503)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Confidence            443335555553211       1122344556666655566778999999999999975544322222222222      


Q ss_pred             -------HHHHHHccCCChHHHhHHHHHHHHc
Q 003722          484 -------YLLELAECDLNYDVRDRARFFKKLF  508 (800)
Q Consensus       484 -------~vl~la~~D~n~DVRDRAr~y~~LL  508 (800)
                             .++.+++ -.-+|+|-=|+-+++-+
T Consensus       388 ~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l  418 (503)
T PF10508_consen  388 SGSPLSNLLMSLLK-QPFPELRCAAYRLLQAL  418 (503)
T ss_pred             cCCchHHHHHHHhc-CCchHHHHHHHHHHHHH
Confidence                   2233332 22478887776555444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.39  E-value=5.2  Score=48.42  Aligned_cols=356  Identities=14%  Similarity=0.152  Sum_probs=191.8

Q ss_pred             ccchHHHHHHHHh---hcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC----C
Q 003722            7 HVISPLVLVAVGK---CARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC----P   79 (800)
Q Consensus         7 ~~I~~iv~~aIkk---~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc----P   79 (800)
                      +.++|.++..+.|   +-.|-.+-+-|+|.-|+-=+-+...++..+.+.+.++.-+...|=-=.-+|++||-.|.    |
T Consensus       318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~  397 (859)
T KOG1241|consen  318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP  397 (859)
T ss_pred             hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence            4677777777777   44445566677777666544444333344566677776666666566677788887763    3


Q ss_pred             Ccc-cchhHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCC
Q 003722           80 NNF-TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT  158 (800)
Q Consensus        80 ~~~-~Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (800)
                      +++ .+.+.....+++.+.|-.-|..-..=-.|.|-+-  + ++     +..                            
T Consensus       398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d--~-l~-----e~~----------------------------  441 (859)
T KOG1241|consen  398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD--F-LP-----EAI----------------------------  441 (859)
T ss_pred             hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh--h-ch-----hhc----------------------------
Confidence            332 3344555556666555433332222222222220  0 00     000                            


Q ss_pred             cchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhcc--CCChHHHHHHHHHHHhcC
Q 003722          159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLW--SHNSAVVLAAAGVHWIMS  236 (800)
Q Consensus       159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~--S~NsAVVlaaa~~~~~l~  236 (800)
                                                                  ++. .++-..+.-+++  +..|=|.-.++..|..++
T Consensus       442 --------------------------------------------~n~-~~l~~~l~~l~~gL~DePrva~N~CWAf~~La  476 (859)
T KOG1241|consen  442 --------------------------------------------INQ-ELLQSKLSALLEGLNDEPRVASNVCWAFISLA  476 (859)
T ss_pred             --------------------------------------------ccH-hhhhHHHHHHHHHhhhCchHHHHHHHHHHHHH
Confidence                                                        000 001111111222  234556677777666553


Q ss_pred             -------C-------H-HHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHH
Q 003722          237 -------P-------K-EDVKRIVKPLLFILR----SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKAL  297 (800)
Q Consensus       237 -------p-------~-~~l~~~v~pLv~LL~----s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~l  297 (800)
                             +       . ..+..+++.|+.--.    ...|.|-.+...+..|+...|+-..+-...|+       .+-..
T Consensus       477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~-------l~il~  549 (859)
T KOG1241|consen  477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLT-------LVILE  549 (859)
T ss_pred             HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH-------HHHHH
Confidence                   1       0 246667777775442    24789999999999999888865554433331       12222


Q ss_pred             HHHHHHhhcCCCCH--HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCC
Q 003722          298 KLEILSSIVTESSI--SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEA  375 (800)
Q Consensus       298 KLeIL~~La~e~Nv--~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~  375 (800)
                      ||+=-.. ..--+.  ..=++||+.-+-.    .-...+|++   +.+++.+++..+..+++++...           +.
T Consensus       550 kl~q~i~-~~~l~~~dr~q~~eLQs~Lc~----~Lq~i~rk~---~~~~~~~~d~iM~lflri~~s~-----------~s  610 (859)
T KOG1241|consen  550 KLDQTIS-SQILSLADRAQLNELQSLLCN----TLQSIIRKV---GSDIREVSDQIMGLFLRIFESK-----------RS  610 (859)
T ss_pred             HHHHHHH-HHhccHhhHHHHHHHHHHHHH----HHHHHHHHc---cccchhHHHHHHHHHHHHHcCC-----------cc
Confidence            2221111 000000  1122333332211    111123333   3377888889999999988642           11


Q ss_pred             chh-HhHHHHHHHHHHhCCcchH----HHHHHHHHhhhccChhhHHHHHHhhhccccCCCC--CCcchHHHHHHHHHhhh
Q 003722          376 DVL-IQSIISIKSIIKQDPSCHE----KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLTTVLKYLAWCF  448 (800)
Q Consensus       376 ~vv-~E~V~vi~~Il~~~P~~~~----~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~--~ip~i~~dvLr~l~~~F  448 (800)
                      .++ -+++..+-.++..--..+.    .....|..-+....+-...++.+=++|.-+...+  ..|+ +.++...|++..
T Consensus       611 ~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py-~d~~mt~Lvq~L  689 (859)
T KOG1241|consen  611 AVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPY-CDELMTVLVQCL  689 (859)
T ss_pred             ccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHc
Confidence            233 3344455555443333333    3355566666667778888888999998875322  3465 677888888887


Q ss_pred             ccC--cHHHHHHHHHHHHHHHhhc
Q 003722          449 KSE--AVETKLQILNTTIKVLLCA  470 (800)
Q Consensus       449 ~~E--~~~VKlqILta~aKL~~~~  470 (800)
                      ..+  +..||-+||..+.-+.+--
T Consensus       690 ss~~~hR~vKP~IlS~FgDIAlaI  713 (859)
T KOG1241|consen  690 SSPNLHRNVKPAILSVFGDIALAI  713 (859)
T ss_pred             cCccccccccchHHHHHHHHHHHH
Confidence            765  5689999999998887643

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=94.32  E-value=2.5  Score=49.96  Aligned_cols=111  Identities=22%  Similarity=0.178  Sum_probs=81.6

Q ss_pred             ccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhh-cCchhhHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhCCCc
Q 003722            5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE-LRQEEITSAIEEIVGILLND--RSPGVVGAAAAAFASICPNN   81 (800)
Q Consensus         5 Rv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~-ldpe~~~~~L~~~l~~LL~D--~dp~Vv~aAl~Af~eIcP~~   81 (800)
                      +-|.|+|+ ++.|-.|..|..++||.+|..|+--+-+ +.+...+..+...|..++.+  +..+.+...+-++.+..|.-
T Consensus       210 ~EPyiv~~-lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q  288 (569)
T KOG1242|consen  210 FEPYIVPI-LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ  288 (569)
T ss_pred             CCchHHhh-HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence            44555554 5677889999999999998888766554 34433555566667777777  77777777777888888887


Q ss_pred             ccchh-HHHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 003722           82 FTLIG-RNYRNLCQILPDVEEWGQILLIEILLRYVV  116 (800)
Q Consensus        82 ~~Lih-~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~  116 (800)
                      +++.- ...+.|-..|-|..+=-|-.-.+.|.+|+.
T Consensus       289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s  324 (569)
T KOG1242|consen  289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS  324 (569)
T ss_pred             HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            76643 457788888888888888888888888873

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.28  E-value=1.5  Score=47.92  Aligned_cols=123  Identities=18%  Similarity=0.242  Sum_probs=84.8

Q ss_pred             HHHHHHH-HhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHh
Q 003722          313 SVFKEFQ-DYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ  391 (800)
Q Consensus       313 ~Il~EL~-~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~  391 (800)
                      .+++.|. -.+++.+..++..+++++|.|+.-....+...+..++..++.           ++..+-..++.++.+++..
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-----------~~~~v~~~al~~l~Dll~~   94 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-----------DDEEVKITALKALFDLLLT   94 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHH
Confidence            7777776 466788889999999999999999999999999999888743           1233444566677777766


Q ss_pred             CCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcC
Q 003722          392 DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK  471 (800)
Q Consensus       392 ~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p  471 (800)
                      |...          .++....+.          +      ..  ....+++.+.+-+..+.++++..+...++||++...
T Consensus        95 ~g~~----------~~~~~~~~~----------~------~~--~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~  146 (298)
T PF12719_consen   95 HGID----------IFDSESDND----------E------SV--DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR  146 (298)
T ss_pred             cCch----------hccchhccC----------c------cc--hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence            6521          112111111          1      11  134566666666667788899999999999998775


Q ss_pred             CCC
Q 003722          472 GGD  474 (800)
Q Consensus       472 ~e~  474 (800)
                      -..
T Consensus       147 i~~  149 (298)
T PF12719_consen  147 ISD  149 (298)
T ss_pred             CCc
Confidence            444

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=94.23  E-value=0.16  Score=52.79  Aligned_cols=145  Identities=14%  Similarity=0.134  Sum_probs=92.5

Q ss_pred             HHHHHHhhhhhccCCChHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccc
Q 003722          206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP------KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV  278 (800)
Q Consensus       206 l~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p------~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~  278 (800)
                      ++.++..+...+.+.+++|+-.|+.++-.++.      ...+..++.+|+..+.. ..-++-.+-..|..|+...+  +.
T Consensus        51 l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~  128 (228)
T PF12348_consen   51 LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YS  128 (228)
T ss_dssp             HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H-
T ss_pred             HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cH
Confidence            34556678888999999999999887655432      13467788888888765 45678888888888888766  11


Q ss_pred             ccc--ccceeccCC-chHHHHHHHHHHHhhcCCCC-----------HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhC
Q 003722          279 PHY--EDFFVSSSD-SYQSKALKLEILSSIVTESS-----------ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKL  344 (800)
Q Consensus       279 ~~l--~~Ffi~~~D-p~~Ik~lKLeIL~~La~e~N-----------v~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~  344 (800)
                      +.+  ..+....++ ...+|..-++.|..+...-+           +..+++-+...+.|.+.+++..|-+++..+...+
T Consensus       129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~  208 (228)
T PF12348_consen  129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF  208 (228)
T ss_dssp             -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence            221  112222233 46799999999998877666           3568888889999999999999999999999888


Q ss_pred             CccHHHHH
Q 003722          345 PKMANTCV  352 (800)
Q Consensus       345 p~~a~~~l  352 (800)
                      |..+...+
T Consensus       209 ~~~a~~~~  216 (228)
T PF12348_consen  209 PERAESIL  216 (228)
T ss_dssp             -HHH----
T ss_pred             CHhhccch
Confidence            88876655

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=94.10  E-value=7.8  Score=45.65  Aligned_cols=140  Identities=14%  Similarity=0.218  Sum_probs=99.6

Q ss_pred             hhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCccccccc---ccceeccCC
Q 003722          215 PLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHY---EDFFVSSSD  290 (800)
Q Consensus       215 pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l---~~Ffi~~~D  290 (800)
                      .|+...|-.+-.=|+..++.-++.+.+.++++-+..++.. +.+.+.++.+.+..|+...|+--..++   ....|. .-
T Consensus       347 sLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~-eG  425 (898)
T COG5240         347 SLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ-EG  425 (898)
T ss_pred             HHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh-cc
Confidence            3455667666666777777878888899999988888874 678899999999999998885433322   222222 22


Q ss_pred             chHHHHHHHHHHHhhc--CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH--HHHHHHHHH
Q 003722          291 SYQSKALKLEILSSIV--TESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA--NTCVEGLLA  357 (800)
Q Consensus       291 p~~Ik~lKLeIL~~La--~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a--~~~l~~LL~  357 (800)
                      -...|+..+|.|..+.  .++.-+.++++|-+|+.|.  ++-.-+++-+|.++.-.|...  ..++..+..
T Consensus       426 g~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyN  494 (898)
T COG5240         426 GLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDC--EYHQITVRILGILGREGPRAKTPGKYVRHIYN  494 (898)
T ss_pred             cchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCCcchHHHHHHH
Confidence            3467888888888765  3567788999999999854  567778888888888777533  244444443

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.96  E-value=9.2  Score=46.41  Aligned_cols=186  Identities=15%  Similarity=0.201  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHHhCCcccccccccceec------cCCchHHHHHHHHHHHhhcCC--
Q 003722          239 EDVKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS------SSDSYQSKALKLEILSSIVTE--  308 (800)
Q Consensus       239 ~~l~~~v~pLv~LL~s--~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~------~~Dp~~Ik~lKLeIL~~La~e--  308 (800)
                      +....+..-++|++.+  +.-++--++-.+..++..-..=|..|...|...      .-+..+|-...+-+...|++.  
T Consensus       592 ~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~  671 (859)
T KOG1241|consen  592 EVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALE  671 (859)
T ss_pred             hHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            4456677778888876  334555556666666666566677776666432      223467878888888777763  


Q ss_pred             CCH----HHHHHHHHHhhhcC--ChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCc----hh
Q 003722          309 SSI----SSVFKEFQDYIRDP--DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD----VL  378 (800)
Q Consensus       309 ~Nv----~~Il~EL~~Yv~~~--d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~----vv  378 (800)
                      +++    ..++.-|...+.+.  +++++-......|.+|..+......+++..+.++++-.    ..+.++.+.    ++
T Consensus       672 ~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as----~~~~d~~~~~~~dYv  747 (859)
T KOG1241|consen  672 DDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS----SVQTDPADDSMVDYV  747 (859)
T ss_pred             hhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hccCCCCcccHHHHH
Confidence            333    35566666666554  55677788899999999999999999999999998632    111122111    11


Q ss_pred             ---H----hHHHHHHHHHHh--CCcchHHHHHHHHHhhhccCh-----hhHHHHHHhhhccccC
Q 003722          379 ---I----QSIISIKSIIKQ--DPSCHEKVIIQLFRSLDSIKV-----PEARVMIIWMVGEYSS  428 (800)
Q Consensus       379 ---~----E~V~vi~~Il~~--~P~~~~~~i~~L~~~ld~i~~-----p~ArasiiWLlGEy~~  428 (800)
                         .    |+.+.|-+=++.  .+......+.++..+++.|..     ..+.++.+=+||.-+.
T Consensus       748 d~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~  811 (859)
T KOG1241|consen  748 DELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLAT  811 (859)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence               1    222222222232  223334456677777766542     3355566777777553

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.84  E-value=20  Score=43.37  Aligned_cols=277  Identities=18%  Similarity=0.163  Sum_probs=160.3

Q ss_pred             ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhCCCcccc
Q 003722            7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL--NDRSPGVVGAAAAAFASICPNNFTL   84 (800)
Q Consensus         7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL--~D~dp~Vv~aAl~Af~eIcP~~~~L   84 (800)
                      .++.-.++.+||+-+...+|-----|.+||+.+=..   +..+.+..-+.+||  .+..+.|--.|+.+|..+....-|+
T Consensus       106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl  182 (938)
T KOG1077|consen  106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL  182 (938)
T ss_pred             hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc
Confidence            466778999999999999998888888888876554   34556666666777  4777788888888888887555556


Q ss_pred             hhH--HHHHHHHhCCCCChhh----HHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCC
Q 003722           85 IGR--NYRNLCQILPDVEEWG----QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT  158 (800)
Q Consensus        85 ih~--~yr~Lc~~L~d~dEWg----Qi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (800)
                      +.+  -+.+++.+|.|-+ .|    -+-+++.|.+|.+...         ..+..                 .+      
T Consensus       183 ~~~~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~y---------k~~~~-----------------~a------  229 (938)
T KOG1077|consen  183 VNPGEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPESY---------KTCLP-----------------LA------  229 (938)
T ss_pred             cChhhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHHH---------hhhHH-----------------HH------
Confidence            544  3567777777655 55    4566777777764221         11100                 00      


Q ss_pred             cchhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH
Q 003722          159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK  238 (800)
Q Consensus       159 ~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~  238 (800)
                       -++....+..   .+                             .|+.   +.+  .-.=.+|=...-+.+++-++.++
T Consensus       230 -vs~L~riv~~---~~-----------------------------t~~q---dYT--yy~vP~PWL~vKl~rlLq~~p~~  271 (938)
T KOG1077|consen  230 -VSRLSRIVVV---VG-----------------------------TSLQ---DYT--YYFVPAPWLQVKLLRLLQIYPTP  271 (938)
T ss_pred             -HHHHHHHHhh---cc-----------------------------cchh---hce--eecCCChHHHHHHHHHHHhCCCC
Confidence             0000000000   00                             0000   000  00011222334445555555333


Q ss_pred             ---HHHHHHHHHHHHHhcCC-----------CcchHHHHHHHHHHHH-h--CCcccccccc---cceeccCCchHHHHHH
Q 003722          239 ---EDVKRIVKPLLFILRSS-----------GASKYVVLCNIQVFAK-A--LPHLFVPHYE---DFFVSSSDSYQSKALK  298 (800)
Q Consensus       239 ---~~l~~~v~pLv~LL~s~-----------~ei~yvvL~~I~~L~~-~--~p~lF~~~l~---~Ffi~~~Dp~~Ik~lK  298 (800)
                         ....++...|=++|+..           .|.+-.+|--.+.++. .  .|++......   .| +...+ +.||.+.
T Consensus       272 ~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~f-ls~rE-~NiRYLa  349 (938)
T KOG1077|consen  272 EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQF-LSHRE-TNIRYLA  349 (938)
T ss_pred             CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-hhccc-ccchhhh
Confidence               22444445555555321           2344445543333332 2  3456555432   33 22233 4599999


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHhh----h-cCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Q 003722          299 LEILSSIVTESSISSVFKEFQDYI----R-DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQ  361 (800)
Q Consensus       299 LeIL~~La~e~Nv~~Il~EL~~Yv----~-~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~  361 (800)
                      ||-++.|++.+-..+.++.=++-+    + +.|..++++++.-+-..+.  -+.+..++..||..|..
T Consensus       350 LEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~IV~elLqYL~t  415 (938)
T KOG1077|consen  350 LESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQIVAELLQYLET  415 (938)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHhh
Confidence            999999999887777666544433    2 5677899999987765544  37888999999998863

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=93.52  E-value=12  Score=46.48  Aligned_cols=240  Identities=17%  Similarity=0.160  Sum_probs=144.9

Q ss_pred             HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHH-HHHHHHhcCCCccHHHHHHHH---HHHhCCCccc-ch
Q 003722           11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIE-EIVGILLNDRSPGVVGAAAAA---FASICPNNFT-LI   85 (800)
Q Consensus        11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~-~~l~~LL~D~dp~Vv~aAl~A---f~eIcP~~~~-Li   85 (800)
                      +=|+..|-|.+.|.++-|.--|+-|++=+-..-++++.+.+. ++...++.++...-=.+++..   ..++-|..-. +-
T Consensus        46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la  125 (1233)
T KOG1824|consen   46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLA  125 (1233)
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccc
Confidence            456778889999999999999999998777766644444433 233334544443333333332   3344553211 11


Q ss_pred             hHHHHHHH----HhCCCCChhh--HHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCc
Q 003722           86 GRNYRNLC----QILPDVEEWG--QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTY  159 (800)
Q Consensus        86 h~~yr~Lc----~~L~d~dEWg--Qi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  159 (800)
                      ...+.++.    ..+....+..  ++.++++|..|-- +.                                        
T Consensus       126 ~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls-r~----------------------------------------  164 (1233)
T KOG1824|consen  126 ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS-RF----------------------------------------  164 (1233)
T ss_pred             cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH-hh----------------------------------------
Confidence            12333333    3333344443  7777777776641 10                                        


Q ss_pred             chhhhhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC---
Q 003722          160 DSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---  236 (800)
Q Consensus       160 ~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~---  236 (800)
                                                             +..+-++|.-+++++.|.|++.-.||.=-|+.++-+++   
T Consensus       165 ---------------------------------------g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~  205 (1233)
T KOG1824|consen  165 ---------------------------------------GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC  205 (1233)
T ss_pred             ---------------------------------------cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc
Confidence                                                   00133477889999999999999999887777765553   


Q ss_pred             CHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHH
Q 003722          237 PKEDVKRIVKPLLFILRSS--GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSV  314 (800)
Q Consensus       237 p~~~l~~~v~pLv~LL~s~--~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~I  314 (800)
                      +...+..++.-|++=|..+  +..--.-...|..+++....-|..|+..                              |
T Consensus       206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~------------------------------i  255 (1233)
T KOG1824|consen  206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDK------------------------------I  255 (1233)
T ss_pred             CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccch------------------------------h
Confidence            3455666776776666543  2222223345566666667777777542                              2


Q ss_pred             HHHHHHhh---hcCChhHHHHHHHHHHHHHhhCCccHH----HHHHHHHHHHH
Q 003722          315 FKEFQDYI---RDPDRRFAADTVAAIGLCARKLPKMAN----TCVEGLLALIR  360 (800)
Q Consensus       315 l~EL~~Yv---~~~d~~f~~~aI~aIg~lA~k~p~~a~----~~l~~LL~LL~  360 (800)
                      +.=+..|.   ...|++++...+++++.+-.+-|....    .+++.+++.++
T Consensus       256 vp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yis  308 (1233)
T KOG1824|consen  256 VPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYIS  308 (1233)
T ss_pred             hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhc
Confidence            23334566   567788999999999999888876443    44555555554

>TIGR02270 conserved hypothetical protein

Probab=93.12  E-value=7.4  Score=44.78  Aligned_cols=210  Identities=12%  Similarity=-0.044  Sum_probs=130.2

Q ss_pred             HHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHH
Q 003722           12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRN   91 (800)
Q Consensus        12 iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~   91 (800)
                      .++.++.+++.|.++-||..||-|+.++..       +.....|..+|.|.+|.|-.+++.++....++       .+-.
T Consensus        86 ~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~  151 (410)
T TIGR02270        86 LDLRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPA  151 (410)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHH
Confidence            348889999999999999999999996532       33445566788999999999888766653322       3557


Q ss_pred             HHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhh
Q 003722           92 LCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSY  171 (800)
Q Consensus        92 Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  171 (800)
                      |...|.+-+.--....++.|.......                                                     
T Consensus       152 L~~~L~d~d~~Vra~A~raLG~l~~~~-----------------------------------------------------  178 (410)
T TIGR02270       152 LEAALTHEDALVRAAALRALGELPRRL-----------------------------------------------------  178 (410)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhcccc-----------------------------------------------------
Confidence            777788888888888888876654210                                                     


Q ss_pred             hcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 003722          172 IEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFI  251 (800)
Q Consensus       172 ~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~L  251 (800)
                                                           .+..+...+++.|+.|=.+|+.....++.+..    ..+++.+
T Consensus       179 -------------------------------------a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A----~~~l~~~  217 (410)
T TIGR02270       179 -------------------------------------SESTLRLYLRDSDPEVRFAALEAGLLAGSRLA----WGVCRRF  217 (410)
T ss_pred             -------------------------------------chHHHHHHHcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHH
Confidence                                                 01112344789999999999988877776533    3455554


Q ss_pred             hcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHH
Q 003722          252 LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAA  331 (800)
Q Consensus       252 L~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~  331 (800)
                      .....--+...+..+..+.  ...-.   +..+--...|+. ++.-.+..|-.+-++.-+..++.-+.      |..+++
T Consensus       218 ~~~~g~~~~~~l~~~lal~--~~~~a---~~~L~~ll~d~~-vr~~a~~AlG~lg~p~av~~L~~~l~------d~~~aR  285 (410)
T TIGR02270       218 QVLEGGPHRQRLLVLLAVA--GGPDA---QAWLRELLQAAA-TRREALRAVGLVGDVEAAPWCLEAMR------EPPWAR  285 (410)
T ss_pred             HhccCccHHHHHHHHHHhC--CchhH---HHHHHHHhcChh-hHHHHHHHHHHcCCcchHHHHHHHhc------CcHHHH
Confidence            4322111222222222222  11111   111111234443 88888888888888887777666543      222555


Q ss_pred             HHHHHHHHHH
Q 003722          332 DTVAAIGLCA  341 (800)
Q Consensus       332 ~aI~aIg~lA  341 (800)
                      .+-.++.+++
T Consensus       286 ~A~eA~~~It  295 (410)
T TIGR02270       286 LAGEAFSLIT  295 (410)
T ss_pred             HHHHHHHHhh
Confidence            5555555443

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.83  E-value=13  Score=45.43  Aligned_cols=181  Identities=17%  Similarity=0.229  Sum_probs=114.2

Q ss_pred             hhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCccc---ccccccceeccCC
Q 003722          215 PLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLF---VPHYEDFFVSSSD  290 (800)
Q Consensus       215 pLL~S~NsAVVlaaa~~~~~l~p~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF---~~~l~~Ffi~~~D  290 (800)
                      +|+...|-.+-.=|+.+.+.-+....+.+++++...++.. +-|.+.++.+.|..++..+|..-   ..++.....- .-
T Consensus       326 ~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~-eG  404 (865)
T KOG1078|consen  326 SLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE-EG  404 (865)
T ss_pred             hhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh-cc
Confidence            5556667666666666667767777889999998888765 67899999999999999999432   2222222111 11


Q ss_pred             chHHHHHHHHHHHhhc--CCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc--cHHHHHHHHHHHHHhhhccc
Q 003722          291 SYQSKALKLEILSSIV--TESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK--MANTCVEGLLALIRQELLTS  366 (800)
Q Consensus       291 p~~Ik~lKLeIL~~La--~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~--~a~~~l~~LL~LL~~~~~~~  366 (800)
                      -..-|+--.|.+..++  +++.=...+.+|-+|+.|  -+|...+++-++.++.--|.  .-..+++.....+-.+    
T Consensus       405 g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED--ce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLE----  478 (865)
T KOG1078|consen  405 GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED--CEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILE----  478 (865)
T ss_pred             CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh--ccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhh----
Confidence            2234555555555544  455556788888888774  44667777777777766653  2335555555543222    


Q ss_pred             cccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhc
Q 003722          367 DIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS  409 (800)
Q Consensus       367 ~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~  409 (800)
                             +..+=..+++.+-++-.+++.....+...|-+++.+
T Consensus       479 -------n~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D  514 (865)
T KOG1078|consen  479 -------NAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLND  514 (865)
T ss_pred             -------hhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcC
Confidence                   111234466667777666777777777777777654

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.48  E-value=7.2  Score=50.49  Aligned_cols=199  Identities=17%  Similarity=0.153  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHH----HhC---CcccccccccceeccCCch-HHHHHHHHHHHhhcCCC-CH-----HHHHHHHHHhhhc
Q 003722          259 KYVVLCNIQVFA----KAL---PHLFVPHYEDFFVSSSDSY-QSKALKLEILSSIVTES-SI-----SSVFKEFQDYIRD  324 (800)
Q Consensus       259 ~yvvL~~I~~L~----~~~---p~lF~~~l~~Ffi~~~Dp~-~Ik~lKLeIL~~La~e~-Nv-----~~Il~EL~~Yv~~  324 (800)
                      +|-.|.++..+.    ...   -++|..+++.||-..+++. ..-.-=++|+..|.++. |+     ..|+..|..+-++
T Consensus       117 ~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~  196 (1266)
T KOG1525|consen  117 YFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRD  196 (1266)
T ss_pred             HHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCC
Confidence            445555655443    111   2577788888886665542 22222677777776554 43     3466666666555


Q ss_pred             CChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHH
Q 003722          325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLF  404 (800)
Q Consensus       325 ~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~  404 (800)
                      ...+=..-|-.-|-+||.+........+...+-   ....     .   ......-...+|..|-+-.|+....++.+|-
T Consensus       197 ~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~---~~~s-----~---~~~~~~~~he~i~~L~~~~p~ll~~vip~l~  265 (1266)
T KOG1525|consen  197 TIKEADKLASDLIERCADNLEDTIANFLNSCLT---EYKS-----R---QSSLKIKYHELILELWRIAPQLLLAVIPQLE  265 (1266)
T ss_pred             ccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHh---hccc-----c---ccchhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            444444445577788888876544433332222   1100     0   0011111222455666667877777777776


Q ss_pred             HhhhccChhhHHHHHHhh----hccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCC
Q 003722          405 RSLDSIKVPEARVMIIWM----VGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG  472 (800)
Q Consensus       405 ~~ld~i~~p~ArasiiWL----lGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~  472 (800)
                      .-|-.- ....|-..+=+    ++++.+...   .--++++..+.++|.+-+.+||...+-.+.-.++.+|.
T Consensus       266 ~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~---~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~  333 (1266)
T KOG1525|consen  266 FELLSE-QEEVRLKAVKLVGRMFSDKDSQLS---ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS  333 (1266)
T ss_pred             HHHhcc-hHHHHHHHHHHHHHHHhcchhhhc---ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence            544322 22333333444    444543221   12357788888999999999999999999888888774

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=92.47  E-value=0.7  Score=40.14  Aligned_cols=84  Identities=20%  Similarity=0.193  Sum_probs=56.6

Q ss_pred             HHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 003722          400 IIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT  479 (800)
Q Consensus       400 i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~  479 (800)
                      |..|.+.+..-.++..|..++|.+|++++     +    +++..+.+-+.++...||.+.+.++.++-  .        .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~--------~   61 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD-----P----EAIPALIELLKDEDPMVRRAAARALGRIG--D--------P   61 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----H----HHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H--------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----H----hHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C--------H
Confidence            34566767555678999999999998863     2    34444555557888999999999999872  1        1


Q ss_pred             HHHHHHHHHHccCCChHHHhHHH
Q 003722          480 RLFSYLLELAECDLNYDVRDRAR  502 (800)
Q Consensus       480 ~L~q~vl~la~~D~n~DVRDRAr  502 (800)
                      +.++.+.++...|.+..||.-|-
T Consensus        62 ~~~~~L~~~l~~~~~~~vr~~a~   84 (88)
T PF13646_consen   62 EAIPALIKLLQDDDDEVVREAAA   84 (88)
T ss_dssp             HTHHHHHHHHTC-SSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHH
Confidence            23444445555666777776554

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.62  E-value=7.4  Score=50.38  Aligned_cols=209  Identities=13%  Similarity=0.143  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHhh--cCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCC-ccHHHHHHHHHHHHHhhhcccccc
Q 003722          293 QSKALKLEILSSI--VTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSDIE  369 (800)
Q Consensus       293 ~Ik~lKLeIL~~L--a~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p-~~a~~~l~~LL~LL~~~~~~~~~~  369 (800)
                      .++..=-++++.|  +.+.-+-.|+.+|...+...+.+++.+|+.-+|++-.... ...+.+-+++..+|..-       
T Consensus       237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~-------  309 (1266)
T KOG1525|consen  237 SLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF-------  309 (1266)
T ss_pred             chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh-------
Confidence            3444555566655  3455566788899988888888999999999998754432 22234445555555431       


Q ss_pred             CCCCCCchhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhc
Q 003722          370 SGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFK  449 (800)
Q Consensus       370 ~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~  449 (800)
                       .+....|-.++|-.+++++..+|...+.....+.-..... ++..|....-+++.-.-..-...+ .+++|..+..+--
T Consensus       310 -~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l~~-~~~ll~~~~eR~r  386 (1266)
T KOG1525|consen  310 -NDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKLVY-IPLLLKLVAERLR  386 (1266)
T ss_pred             -ccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhhhh-hHHHHHHHHHHHh
Confidence             0122335677888899999999987665555544333322 344444334444432110001122 3347777778877


Q ss_pred             cCcHHHHHHHHHHHHHHHhh---cCCCC-------h---------------HHHHHHHHHHHHHHccCCChHHHhHHHHH
Q 003722          450 SEAVETKLQILNTTIKVLLC---AKGGD-------M---------------WTITRLFSYLLELAECDLNYDVRDRARFF  504 (800)
Q Consensus       450 ~E~~~VKlqILta~aKL~~~---~p~e~-------~---------------~~l~~L~q~vl~la~~D~n~DVRDRAr~y  504 (800)
                      +-...||.+.+.-++++|-+   ...++       .               ...+.++.++|.......+.++++|-+-+
T Consensus       387 DKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l  466 (1266)
T KOG1525|consen  387 DKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHL  466 (1266)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence            88889999999999999985   11100       0               01234556777777788899999999998


Q ss_pred             HHHccCC
Q 003722          505 KKLFSHN  511 (800)
Q Consensus       505 ~~LL~~~  511 (800)
                      +.+|..-
T Consensus       467 ~~~l~~~  473 (1266)
T KOG1525|consen  467 YQLLAGL  473 (1266)
T ss_pred             HHHHhcc
Confidence            8888653

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=91.36  E-value=1.1  Score=40.66  Aligned_cols=101  Identities=10%  Similarity=0.118  Sum_probs=66.1

Q ss_pred             HHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHH-----HHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHH
Q 003722          314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI  388 (800)
Q Consensus       314 Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~-----~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~I  388 (800)
                      ++..|..++.+.+.+.+..++.+++.++...|....     .++..++++|..+           +..+...++..+.+|
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----------~~~v~~~a~~~L~~l   76 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-----------DEEVVKAALWALRNL   76 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-----------CHHHHHHHHHHHHHH
Confidence            456666777777888999999999999987655444     4455777776531           233566677788888


Q ss_pred             HHhCCcchHH-----HHHHHHHhhhccChhhHHHHHHhhhccc
Q 003722          389 IKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWMVGEY  426 (800)
Q Consensus       389 l~~~P~~~~~-----~i~~L~~~ld~i~~p~ArasiiWLlGEy  426 (800)
                      .+..|.....     ++..|.+.+..- +...+...+|+++..
T Consensus        77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l  118 (120)
T cd00020          77 AAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNL  118 (120)
T ss_pred             ccCcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHh
Confidence            8766543222     355556655543 455666667777653

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=89.73  E-value=1.7  Score=39.42  Aligned_cols=63  Identities=22%  Similarity=0.070  Sum_probs=53.1

Q ss_pred             HHHhhcCCCCchhhHHHHHHHHHHhhc-C-chhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722           16 AVGKCARDPSVFVRKCAANALPKLHEL-R-QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC   78 (800)
Q Consensus        16 aIkk~l~D~sPYVRK~AA~AI~Kly~l-d-pe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc   78 (800)
                      -+.+-+.|+-|-||-.|..-+.|+..- + +....+.+..++...|.|.|+.|--||+.+|..+|
T Consensus         7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La   71 (92)
T PF10363_consen    7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALA   71 (92)
T ss_pred             HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence            345667899999999999999998875 4 42467788888889999999999999999988876

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=89.66  E-value=53  Score=39.39  Aligned_cols=75  Identities=23%  Similarity=0.194  Sum_probs=54.6

Q ss_pred             cccccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhh---cCchh-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722            4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE---LRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC   78 (800)
Q Consensus         4 IRv~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~---ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc   78 (800)
                      +|-.--.+.++..|-+.++++.|.||-.||--+..+-.   -.-+. ....+-.+|..-|....|-|+|+.+.|+..|.
T Consensus       596 ~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~  674 (975)
T COG5181         596 FRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIY  674 (975)
T ss_pred             hccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence            34444566777888899999999999999876554443   33322 44456667777788899999999888877664

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=89.47  E-value=5  Score=49.43  Aligned_cols=254  Identities=16%  Similarity=0.101  Sum_probs=144.5

Q ss_pred             chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhcCCCccHHHHHHH--HHHHhCCCcccch
Q 003722            9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAA--AFASICPNNFTLI   85 (800)
Q Consensus         9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~-~~~~L~~~l~~LL~D~dp~Vv~aAl~--Af~eIcP~~~~Li   85 (800)
                      +..-+++.++-++.|.++.||.+.|+.+.=+--+-|.+ ..+.+.+..-.+++|-+|.|..+-+-  ...+.+++... +
T Consensus       395 ~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g-~  473 (759)
T KOG0211|consen  395 PDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG-I  473 (759)
T ss_pred             chhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc-c
Confidence            34455789999999999999999999887554444422 34456666667899999999998873  33344444322 1


Q ss_pred             hHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccch--hhhhhhhhhccCCCcccccccccccccCCCCCCCcchhh
Q 003722           86 GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKE--SIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSEL  163 (800)
Q Consensus        86 h~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p--~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  163 (800)
                      .-+-..++..|.++.||..--+-.-+..|.+.-   ..-  ..+|+                                  
T Consensus       474 ~~~s~slLp~i~el~~d~~wRvr~ail~~ip~l---a~q~~~~~~~----------------------------------  516 (759)
T KOG0211|consen  474 STVSNSLLPAIVELAEDLLWRVRLAILEYIPQL---ALQLGVEFFD----------------------------------  516 (759)
T ss_pred             hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHH---HHhhhhHHhh----------------------------------
Confidence            112335667778888887666666666666421   000  00000                                  


Q ss_pred             hhhhhhhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCChHHHHHHH----HHHHhcCCHH
Q 003722          164 VNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAA----GVHWIMSPKE  239 (800)
Q Consensus       164 ~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~NsAVVlaaa----~~~~~l~p~~  239 (800)
                                                              +-   +-..+...+...=.++-=+|+    .+.+.++..-
T Consensus       517 ----------------------------------------~~---~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w  553 (759)
T KOG0211|consen  517 ----------------------------------------EK---LAELLRTWLPDHVYSIREAAARNLPALVETFGSEW  553 (759)
T ss_pred             ----------------------------------------HH---HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch
Confidence                                                    00   111111112222222222222    2333444322


Q ss_pred             HHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhCC-cccccccccce-eccCCch-HHHHHHHHHHHhhc---CCCCHH
Q 003722          240 DVKRIVKPLLFI-LRSSGASKYVVLCNIQVFAKALP-HLFVPHYEDFF-VSSSDSY-QSKALKLEILSSIV---TESSIS  312 (800)
Q Consensus       240 ~l~~~v~pLv~L-L~s~~ei~yvvL~~I~~L~~~~p-~lF~~~l~~Ff-i~~~Dp~-~Ik~lKLeIL~~La---~e~Nv~  312 (800)
                      .....+.-++.. +..+.=.|...|..|..|+.... +++..++--++ -...||. .||-..+..|..+.   ...-..
T Consensus       554 ~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~  633 (759)
T KOG0211|consen  554 ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD  633 (759)
T ss_pred             hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH
Confidence            333344333333 22234578888999998886554 45666654443 3457764 78888877777654   344444


Q ss_pred             HHHHHHHHhh-hcCChhHHHHHHHHHHHHHhh
Q 003722          313 SVFKEFQDYI-RDPDRRFAADTVAAIGLCARK  343 (800)
Q Consensus       313 ~Il~EL~~Yv-~~~d~~f~~~aI~aIg~lA~k  343 (800)
                      .-+..+...+ .+.|.+.+-.|+.|.|.++..
T Consensus       634 ~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~  665 (759)
T KOG0211|consen  634 EEVLPLLETLSSDQELDVRYRAILAFGSIELS  665 (759)
T ss_pred             HHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence            4444444444 467778888888888877653

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=89.24  E-value=21  Score=42.50  Aligned_cols=78  Identities=19%  Similarity=0.179  Sum_probs=54.3

Q ss_pred             HhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHHHHHHhCC
Q 003722           18 GKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILP   97 (800)
Q Consensus        18 kk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr~Lc~~L~   97 (800)
                      -.+++ .++-+.+-||-=|+|.|+.-|+.+.+.+.. +-.|..|.|..|-..|+..|-.+|-+.-+++.+...-|+.+|.
T Consensus        29 l~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a-~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~  106 (556)
T PF05918_consen   29 LDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINA-QLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ  106 (556)
T ss_dssp             HHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHH-HHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT
T ss_pred             HHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHH-HHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh
Confidence            33444 367799999999999999999434444444 4457889999999999999999998888888888888888886

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=88.97  E-value=14  Score=38.14  Aligned_cols=126  Identities=17%  Similarity=0.060  Sum_probs=69.8

Q ss_pred             chhHhHHHHHHHHHHhCCcchHHHHH----HHHHhhhccC---hhhHHHHHHhhhccccCCCCCCcchHHHH-HHHHHhh
Q 003722          376 DVLIQSIISIKSIIKQDPSCHEKVII----QLFRSLDSIK---VPEARVMIIWMVGEYSSVGVKIPRMLTTV-LKYLAWC  447 (800)
Q Consensus       376 ~vv~E~V~vi~~Il~~~P~~~~~~i~----~L~~~ld~i~---~p~ArasiiWLlGEy~~~~~~ip~i~~dv-Lr~l~~~  447 (800)
                      .++.+++..+..+.+......+..+.    .|.+.+.+-+   ...|..++.= +.+++.       +.+.+ +..+...
T Consensus        68 ~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~-i~~~~~-------~~~~~~~~~l~~~  139 (228)
T PF12348_consen   68 KVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDA-IIESCS-------YSPKILLEILSQG  139 (228)
T ss_dssp             -HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHH-HHTTS--------H--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-HHHHCC-------cHHHHHHHHHHHH
Confidence            36777887788887765554444444    3444333211   1233333322 233332       12344 5566667


Q ss_pred             hccCcHHHHHHHHHHHHHHHhhcCC--CCh---HHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 003722          448 FKSEAVETKLQILNTTIKVLLCAKG--GDM---WTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH  510 (800)
Q Consensus       448 F~~E~~~VKlqILta~aKL~~~~p~--e~~---~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~~  510 (800)
                      ...-++.+|...+..+..+.-..+.  ...   ..+..+.. .+..+..|.+++||+-|+..+..+..
T Consensus       140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~-~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVK-ALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHH-HHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            7788899999999999888877761  111   11233443 44555789999999999998887754

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=88.21  E-value=0.42  Score=38.36  Aligned_cols=32  Identities=34%  Similarity=0.209  Sum_probs=28.1

Q ss_pred             cchHHHHHHHHhhcCCCCchhhHHHHHHHHHH
Q 003722            8 VISPLVLVAVGKCARDPSVFVRKCAANALPKL   39 (800)
Q Consensus         8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kl   39 (800)
                      ...+-++..+.+++.|.++.||.+|+.|+.++
T Consensus        24 ~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen   24 PYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            45678889999999999999999999999754

...

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.48  E-value=81  Score=39.79  Aligned_cols=176  Identities=14%  Similarity=0.171  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHhC-Ccccccc---cccceec------cCCchHHHHHHHHHHHhhcC----CCCHHHHHHHHH-Hhh--
Q 003722          260 YVVLCNIQVFAKAL-PHLFVPH---YEDFFVS------SSDSYQSKALKLEILSSIVT----ESSISSVFKEFQ-DYI--  322 (800)
Q Consensus       260 yvvL~~I~~L~~~~-p~lF~~~---l~~Ffi~------~~Dp~~Ik~lKLeIL~~La~----e~Nv~~Il~EL~-~Yv--  322 (800)
                      -.++..+..++.++ +..|.+.   +-..|-+      .+++.--|.=.|.++..|++    .+-++..++-+. .|+  
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP  469 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP  469 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence            35677788888877 6666543   2333332      24455566677888877763    233334444332 233  


Q ss_pred             --hcCChhHHHHHHHHHHHHH-hhCC--ccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchH
Q 003722          323 --RDPDRRFAADTVAAIGLCA-RKLP--KMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE  397 (800)
Q Consensus       323 --~~~d~~f~~~aI~aIg~lA-~k~p--~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~  397 (800)
                        ++.---++++|.--++..+ +.++  ......++...+.|...          .+-.|-.|+...++-+|..++..++
T Consensus       470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d----------~~lPV~VeAalALq~fI~~~~~~~e  539 (1010)
T KOG1991|consen  470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLND----------NELPVRVEAALALQSFISNQEQADE  539 (1010)
T ss_pred             hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccC----------CcCchhhHHHHHHHHHHhcchhhhh
Confidence              2222247888888888888 5554  45556666666655421          1223678899999999998886654


Q ss_pred             HH---HHHHHHhhh---ccChhhHHHHHH-hhhccccCCCCCCcchHHHHHHHHHhhh
Q 003722          398 KV---IIQLFRSLD---SIKVPEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCF  448 (800)
Q Consensus       398 ~~---i~~L~~~ld---~i~~p~Arasii-WLlGEy~~~~~~ip~i~~dvLr~l~~~F  448 (800)
                      ++   |..+++.|-   ...+-+....++ =++++|++..  .| ++.++...++..|
T Consensus       540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseEl--sP-fA~eL~q~La~~F  594 (1010)
T KOG1991|consen  540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEEL--SP-FAVELCQNLAETF  594 (1010)
T ss_pred             hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhh--ch-hHHHHHHHHHHHH
Confidence            33   333333221   122444555554 7899998732  34 4667766666555

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=87.46  E-value=20  Score=39.33  Aligned_cols=92  Identities=26%  Similarity=0.222  Sum_probs=67.0

Q ss_pred             HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCcccchhHHHH
Q 003722           11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR   90 (800)
Q Consensus        11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~~~Lih~~yr   90 (800)
                      +.....+.+.+.|+++.||..|+..+..+       ......+.+..+|.|.++.|-..|+.++-++-...      .+.
T Consensus        42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------a~~  108 (335)
T COG1413          42 PEAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGDPE------AVP  108 (335)
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh------HHH
Confidence            45677888999999999999999884422       12334455667899999999999999999886332      223


Q ss_pred             HHHHhCC-CCChhhHHHHHHHHHhhh
Q 003722           91 NLCQILP-DVEEWGQILLIEILLRYV  115 (800)
Q Consensus        91 ~Lc~~L~-d~dEWgQi~iL~lL~rY~  115 (800)
                      .|...|. +.+.|-.......|.+-.
T Consensus       109 ~li~~l~~d~~~~vR~~aa~aL~~~~  134 (335)
T COG1413         109 PLVELLENDENEGVRAAAARALGKLG  134 (335)
T ss_pred             HHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence            4445555 688888887777777654

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=87.28  E-value=20  Score=39.13  Aligned_cols=130  Identities=18%  Similarity=0.109  Sum_probs=77.2

Q ss_pred             HHHHHh-hhhhccCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCC-ccccccc
Q 003722          207 KLLLQC-TSPLLWSHNSAVVLAAAGVHWIM--SPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP-HLFVPHY  281 (800)
Q Consensus       207 ~lLL~~-~~pLL~S~NsAVVlaaa~~~~~l--~p~~~l~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~~p-~lF~~~l  281 (800)
                      .-+++. +.|.++|.+++|--.+.+++-.+  -..+.-.....-+...+. .+.+++-.+|+.|--|+..++ ..|...-
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~  104 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES  104 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence            344544 45888888888777777764222  122222222223333443 356788888888877777665 2222221


Q ss_pred             ccceeccCCchHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccH-HHHHHHHHHH
Q 003722          282 EDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA-NTCVEGLLAL  358 (800)
Q Consensus       282 ~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a-~~~l~~LL~L  358 (800)
                              ++.              .......+++=|..|+.+.+.++...++..+.++-..---.. ..++..|+-+
T Consensus       105 --------~~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~  160 (298)
T PF12719_consen  105 --------DND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL  160 (298)
T ss_pred             --------ccC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence                    111              344556777778888888888899999999998765433233 5666666544

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.65  E-value=8.4  Score=45.26  Aligned_cols=197  Identities=14%  Similarity=0.154  Sum_probs=122.3

Q ss_pred             cCCChHHHHHHHHHHHhcCC--HHH----H-HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhCC---------cccccc
Q 003722          218 WSHNSAVVLAAAGVHWIMSP--KED----V-KRIVKPLLFILRSS-GASKYVVLCNIQVFAKALP---------HLFVPH  280 (800)
Q Consensus       218 ~S~NsAVVlaaa~~~~~l~p--~~~----l-~~~v~pLv~LL~s~-~ei~yvvL~~I~~L~~~~p---------~lF~~~  280 (800)
                      +..++.+.++|+-++-+++.  .+.    + ..++..++.||.++ .+++--+.-.|.-|+...|         .++.|-
T Consensus       120 ~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL  199 (514)
T KOG0166|consen  120 RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPL  199 (514)
T ss_pred             cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence            56779999999999888864  111    1 23566678998864 5566555555555554433         233333


Q ss_pred             cccceeccCCchHHHHHHHHHHHhhcCCC-------CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHH---
Q 003722          281 YEDFFVSSSDSYQSKALKLEILSSIVTES-------SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANT---  350 (800)
Q Consensus       281 l~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~-------Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~---  350 (800)
                      +..+.  .+++..+.+-..=.|..||--.       ++..|+.=|..-+.+.|.++..+|.-||..++.--++...-   
T Consensus       200 l~~l~--~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~  277 (514)
T KOG0166|consen  200 LRLLN--KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID  277 (514)
T ss_pred             HHHhc--cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            33332  2344567777778888998765       47888888888899999999999999999998666655543   


Q ss_pred             --HHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHHHhCCcchHH-----HHHHHHHhhhccChhhHHHHHHhhh
Q 003722          351 --CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWMV  423 (800)
Q Consensus       351 --~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~-----~i~~L~~~ld~i~~p~ArasiiWLl  423 (800)
                        ++..|++||...           ...++.-++-.+-+|+.-+......     .+..|...+..-.....|....|+|
T Consensus       278 ~gvv~~LV~lL~~~-----------~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i  346 (514)
T KOG0166|consen  278 AGVVPRLVDLLGHS-----------SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI  346 (514)
T ss_pred             ccchHHHHHHHcCC-----------CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence              345777877532           1123334444444443333222221     2444444444333344667779999


Q ss_pred             cccc
Q 003722          424 GEYS  427 (800)
Q Consensus       424 GEy~  427 (800)
                      +.-+
T Consensus       347 SNIt  350 (514)
T KOG0166|consen  347 SNIT  350 (514)
T ss_pred             HHhh
Confidence            8764

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain

Probab=86.56  E-value=27  Score=34.83  Aligned_cols=151  Identities=17%  Similarity=0.083  Sum_probs=83.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCch
Q 003722          298 KLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADV  377 (800)
Q Consensus       298 KLeIL~~La~e~Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~v  377 (800)
                      |+.-+..=.++.|++.++++|..+..+.+.+.....++.|-..|..-|..+..+...+-.+-...           ...+
T Consensus         3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~-----------~~~f   71 (209)
T PF02854_consen    3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRF-----------PSEF   71 (209)
T ss_dssp             HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHC-----------HHHH
T ss_pred             hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccc-----------hhhH
Confidence            44434433459999999999999887767889999999999999999977766655544432210           0011


Q ss_pred             hHhHHHHHHHHHHhCCcchHHHHHHHHHhhhc--cChhhHHHHHHhhhccccCCCCCCcchHHHHHHHHHhhhcc-----
Q 003722          378 LIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS-----  450 (800)
Q Consensus       378 v~E~V~vi~~Il~~~P~~~~~~i~~L~~~ld~--i~~p~ArasiiWLlGEy~~~~~~ip~i~~dvLr~l~~~F~~-----  450 (800)
                      ....+..+..-++...         .....+.  .....-+.+.+.++||-....-.-+.++-++++.+......     
T Consensus        72 ~~~ll~~~~~~f~~~~---------~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~  142 (209)
T PF02854_consen   72 RSLLLNRCQEEFEERY---------SNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPP  142 (209)
T ss_dssp             HHHHHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHH
T ss_pred             HHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCC
Confidence            1111111111111110         0000010  11122344567888885332212244567788888766655     


Q ss_pred             ---CcHHHHHHHHHHHHHHHh
Q 003722          451 ---EAVETKLQILNTTIKVLL  468 (800)
Q Consensus       451 ---E~~~VKlqILta~aKL~~  468 (800)
                         +..+.=..+|..+.+.+.
T Consensus       143 ~~~~~ie~~~~lL~~~G~~l~  163 (209)
T PF02854_consen  143 PDEENIECLCTLLKTCGKKLE  163 (209)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHHh
Confidence               334444556666666665

MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=86.43  E-value=36  Score=43.61  Aligned_cols=67  Identities=15%  Similarity=0.049  Sum_probs=47.6

Q ss_pred             chHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc--CchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCC
Q 003722            9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL--RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP   79 (800)
Q Consensus         9 I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l--dpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP   79 (800)
                      +++++..+|+..-.-    =-|.+|+-+......  +.+.-.+.+..++-.|+.|+.+.|-+.|+..+.++.+
T Consensus       423 ~vs~lts~IR~lk~~----~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~  491 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTI----QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLA  491 (1431)
T ss_pred             eHHHHHHHHHhhhcc----hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence            456666555543221    236677776665554  4434667788999999999999999999999999864

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=84.97  E-value=1.9  Score=51.33  Aligned_cols=69  Identities=20%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             hHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCch--hhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Q 003722           10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE--EITSAIEEIVGILLNDRSPGVVGAAAAAFASIC   78 (800)
Q Consensus        10 ~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe--~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc   78 (800)
                      +.-++.-+..-+.|.+||+|-.|...+.|+|++...  ..+..+++++...|.|++..|-.+|+..+..+.
T Consensus       344 ~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL  414 (1128)
T COG5098         344 LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL  414 (1128)
T ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            345566667778999999999999999999998532  355678888888999999999999999887774

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.05  E-value=45  Score=37.43  Aligned_cols=167  Identities=14%  Similarity=0.176  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhhc-CCCCHHHHHH-----HHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHH-----HHHHHHHHhh
Q 003722          294 SKALKLEILSSIV-TESSISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCV-----EGLLALIRQE  362 (800)
Q Consensus       294 Ik~lKLeIL~~La-~e~Nv~~Il~-----EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l-----~~LL~LL~~~  362 (800)
                      =|.-.|+-|-.++ +=+|+..++.     =+..|+.+.+..++..|.+-||.|+++-|.+-..++     ..|+..++.+
T Consensus        99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~  178 (342)
T KOG2160|consen   99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD  178 (342)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence            3444444444443 2344444332     334599999999999999999999999998777664     4555555421


Q ss_pred             hccccccCCCCCCchhHhHHHHHHHHHHhCCcchHHH-----HHHHHHhhhcc-ChhhHHHHHHhhhccccCC--CCCCc
Q 003722          363 LLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKV-----IIQLFRSLDSI-KVPEARVMIIWMVGEYSSV--GVKIP  434 (800)
Q Consensus       363 ~~~~~~~~~~~~~~vv~E~V~vi~~Il~~~P~~~~~~-----i~~L~~~ld~i-~~p~ArasiiWLlGEy~~~--~~~ip  434 (800)
                                ....+-..++-.|..+||++|......     ..-|.+.+..= .+...++.++++++-+-..  .+.. 
T Consensus       179 ----------~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d-  247 (342)
T KOG2160|consen  179 ----------DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED-  247 (342)
T ss_pred             ----------CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-
Confidence                      122244667788999999998654332     23444444442 4678888888988876431  1100 


Q ss_pred             chHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHhhcC
Q 003722          435 RMLTTVLKYLAWCFK-SEAVETKLQILNTTIKVLLCAK  471 (800)
Q Consensus       435 ~i~~dvLr~l~~~F~-~E~~~VKlqILta~aKL~~~~p  471 (800)
                      -+.+..+.+.+.++. ....+++...+++..++....+
T Consensus       248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~  285 (342)
T KOG2160|consen  248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS  285 (342)
T ss_pred             HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence            011222333333443 4455677777777766655443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=84.04  E-value=5.6  Score=36.41  Aligned_cols=73  Identities=19%  Similarity=0.330  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHcc
Q 003722          436 MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS  509 (800)
Q Consensus       436 i~~dvLr~l~~~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~q~vl~la~~D~n~DVRDRAr~y~~LL~  509 (800)
                      ..+.++.-+.+.|.+++..||.....++..+.-...++....+..+|..+..+ ..|.+..||.=|.++-+||.
T Consensus        24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-SADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhc
Confidence            35666777778999999999999888888887665555444567788877776 47899999999999999885

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=83.68  E-value=1  Score=34.83  Aligned_cols=25  Identities=28%  Similarity=0.179  Sum_probs=22.5

Q ss_pred             HHHHHHHHhhcCCCCchhhHHHHHH
Q 003722           11 PLVLVAVGKCARDPSVFVRKCAANA   35 (800)
Q Consensus        11 ~iv~~aIkk~l~D~sPYVRK~AA~A   35 (800)
                      +.|..+|.+.+.|++|-||++|.-.
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            5789999999999999999998754

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=83.65  E-value=20  Score=42.71  Aligned_cols=88  Identities=18%  Similarity=0.324  Sum_probs=51.1

Q ss_pred             HHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHH-HHHHHHHHhCCcch
Q 003722          318 FQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSI-ISIKSIIKQDPSCH  396 (800)
Q Consensus       318 L~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V-~vi~~Il~~~P~~~  396 (800)
                      +...+.|.|..+++.||+.|-.++..-|....++.++|..||..+            +.....+| .+|..|++.+|.. 
T Consensus        64 ~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td------------d~~E~~~v~~sL~~ll~~d~k~-  130 (556)
T PF05918_consen   64 QLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD------------DPVELDAVKNSLMSLLKQDPKG-  130 (556)
T ss_dssp             HHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHH-HHH-
T ss_pred             HHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc------------cHHHHHHHHHHHHHHHhcCcHH-
Confidence            334455667889999999999999888999999999999999743            21222223 2567788888853 


Q ss_pred             HHHHHHHHHhhh--ccChhhHHHHHH
Q 003722          397 EKVIIQLFRSLD--SIKVPEARVMII  420 (800)
Q Consensus       397 ~~~i~~L~~~ld--~i~~p~Arasii  420 (800)
                        ++.-|+..+.  .-.+...|-.++
T Consensus       131 --tL~~lf~~i~~~~~~de~~Re~~l  154 (556)
T PF05918_consen  131 --TLTGLFSQIESSKSGDEQVRERAL  154 (556)
T ss_dssp             --HHHHHHHHHH---HS-HHHHHHHH
T ss_pred             --HHHHHHHHHHhcccCchHHHHHHH
Confidence              3444444443  123445666655

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=83.56  E-value=13  Score=37.25  Aligned_cols=125  Identities=15%  Similarity=0.308  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhC-Ccccccccccce------eccCCchHHHHHHHHHHHhhcCCC
Q 003722          238 KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFF------VSSSDSYQSKALKLEILSSIVTES  309 (800)
Q Consensus       238 ~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~-p~lF~~~l~~Ff------i~~~Dp~~Ik~lKLeIL~~La~e~  309 (800)
                      ...+.+.+.-+..||++ ++..++.+++-+..++..+ ++.|..|+..++      +...||..++...+..|..|.   
T Consensus        20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~---   96 (165)
T PF08167_consen   20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF---   96 (165)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---
Confidence            45567777777888876 5788999999998888887 788877765543      123666677777777776642   


Q ss_pred             CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHHH
Q 003722          310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII  389 (800)
Q Consensus       310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~Il  389 (800)
                                .|+.. .+++.|+...          ......+..++.+++.             ......++..+..++
T Consensus        97 ----------~~~~~-~p~l~Rei~t----------p~l~~~i~~ll~l~~~-------------~~~~~~~l~~L~~ll  142 (165)
T PF08167_consen   97 ----------DLIRG-KPTLTREIAT----------PNLPKFIQSLLQLLQD-------------SSCPETALDALATLL  142 (165)
T ss_pred             ----------HHhcC-CCchHHHHhh----------ccHHHHHHHHHHHHhc-------------cccHHHHHHHHHHHH
Confidence                      33332 2234444320          1123445667776651             124555777899999


Q ss_pred             HhCCcchHHH
Q 003722          390 KQDPSCHEKV  399 (800)
Q Consensus       390 ~~~P~~~~~~  399 (800)
                      +.||..+...
T Consensus       143 ~~~ptt~rp~  152 (165)
T PF08167_consen  143 PHHPTTFRPF  152 (165)
T ss_pred             HHCCccccch
Confidence            9999865443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=82.99  E-value=26  Score=38.57  Aligned_cols=65  Identities=29%  Similarity=0.316  Sum_probs=49.1

Q ss_pred             HHHHHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCCCc
Q 003722           11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN   81 (800)
Q Consensus        11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP~~   81 (800)
                      +-.+..+.+.+.|.++.||..|+.|+.++-  +| .-.+.++..   |-+|.+..|..+|+.++..+-..+
T Consensus        73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~-~a~~~li~~---l~~d~~~~vR~~aa~aL~~~~~~~  137 (335)
T COG1413          73 EEAVPLLRELLSDEDPRVRDAAADALGELG--DP-EAVPPLVEL---LENDENEGVRAAAARALGKLGDER  137 (335)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-hHHHHHHHH---HHcCCcHhHHHHHHHHHHhcCchh
Confidence            456788899999999999999999888652  23 223333333   233999999999999999997654

>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain

Probab=82.89  E-value=2.7  Score=38.14  Aligned_cols=40  Identities=20%  Similarity=0.404  Sum_probs=34.3

Q ss_pred             CCCCeeEEEEecCCCccCCCceEEEEEEEEecCCCceeceEeeec
Q 003722          738 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDE  782 (800)
Q Consensus       738 ~g~gl~~~y~f~~~~~~~~~~~v~v~~~~~N~s~~~~~~i~~~~~  782 (800)
                      .++||.|.+.+.|.+     ..++|.++|.|++..+|+++.+.--
T Consensus         3 ~~~~l~I~~~~~~~~-----~~~~i~~~~~N~s~~~it~f~~~~a   42 (104)
T smart00809        3 EKNGLQIGFKFERRP-----GLIRITLTFTNKSPSPITNFSFQAA   42 (104)
T ss_pred             cCCCEEEEEEEEcCC-----CeEEEEEEEEeCCCCeeeeEEEEEE
Confidence            357999999998863     4689999999999999999998654

Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=82.38  E-value=9.5  Score=48.44  Aligned_cols=110  Identities=17%  Similarity=0.085  Sum_probs=77.6

Q ss_pred             ccchHHHHHHHHhhcCCCCchhhHHHHHHHHHHhhc-CchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC--CCccc
Q 003722            7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC--PNNFT   83 (800)
Q Consensus         7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l-dpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIc--P~~~~   83 (800)
                      ..++..|-..+...+.|+.|+||++-..+|.-++.. ..+...+.|...|-+.|||+|...-++=+-.+.-||  -..-.
T Consensus       573 ~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs  652 (1431)
T KOG1240|consen  573 QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS  652 (1431)
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee
Confidence            456778888999999999999999999999998886 332244567788888999999988775322222222  11100


Q ss_pred             chhHHHHHHHHhCCCCChhhHHHHHHHHHhhhh
Q 003722           84 LIGRNYRNLCQILPDVEEWGQILLIEILLRYVV  116 (800)
Q Consensus        84 Lih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~~  116 (800)
                      .-....--|...|.|-+|.--+.+|+.|.-.+.
T Consensus       653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik  685 (1431)
T KOG1240|consen  653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK  685 (1431)
T ss_pred             HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence            101112246678999999999999999888774

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=81.83  E-value=1.2e+02  Score=36.22  Aligned_cols=391  Identities=14%  Similarity=0.089  Sum_probs=212.6

Q ss_pred             HHHHHhhcCCCCchhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHhcCCCccHHHHHHHHHHHhCC---Cccc-chhHHH
Q 003722           14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NNFT-LIGRNY   89 (800)
Q Consensus        14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldpe~~~~~L~~~l~~LL~D~dp~Vv~aAl~Af~eIcP---~~~~-Lih~~y   89 (800)
                      ...+-.+ .|+++-||++-+-|....+...-..+...|.++.+.-|+-....-+.+++..++-..-   ...+ .+|+..
T Consensus        20 ~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~   98 (569)
T KOG1242|consen   20 LFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISII   98 (569)
T ss_pred             eeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHH
Confidence            3344445 9999999999988888887765434566777777776653333334444444433321   1223 378889


Q ss_pred             HHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccC-CCCCCCcchhhhhhhh
Q 003722           90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDN-GIPSRTYDSELVNLVS  168 (800)
Q Consensus        90 r~Lc~~L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~  168 (800)
                      -+|.+.+....+--|......|.-|.....+.  +..+|.....+--...+        ...+ ++     -...+- +.
T Consensus        99 ~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~--~~~~~l~~l~~ll~~~~--------~~~~~~a-----a~~~ag-~v  162 (569)
T KOG1242|consen   99 EILLEELDTPSKSVQRAVSTCLPPLVVLSKGL--SGEYVLELLLELLTSTK--------IAERAGA-----AYGLAG-LV  162 (569)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc--CHHHHHHHHHHHhcccc--------HHHHhhh-----hHHHHH-HH
Confidence            99999999999999999999998887533211  11222211100000000        0000 00     000000 00


Q ss_pred             hhhhcccccccccCCCccccccccccccccCCCCChhHHHHHHhhhhhccCCCh-----HHHHHHHHHHHhcCCH--HHH
Q 003722          169 RSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-----AVVLAAAGVHWIMSPK--EDV  241 (800)
Q Consensus       169 ~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLL~S~Ns-----AVVlaaa~~~~~l~p~--~~l  241 (800)
                      ++++.                            ...-=..++..+...++..++     +..++...++.+++++  -++
T Consensus       163 ~g~~i----------------------------~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi  214 (569)
T KOG1242|consen  163 NGLGI----------------------------ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI  214 (569)
T ss_pred             cCcHH----------------------------hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH
Confidence            00000                            000013455555555555554     3444455555667654  234


Q ss_pred             HHHHHHHHHHhc-CCCcchHHHHHHHHHHHHhCC----ccccccc-ccceeccCCchHHHHHHHHHHHhhcCCCCH----
Q 003722          242 KRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP----HLFVPHY-EDFFVSSSDSYQSKALKLEILSSIVTESSI----  311 (800)
Q Consensus       242 ~~~v~pLv~LL~-s~~ei~yvvL~~I~~L~~~~p----~lF~~~l-~~Ffi~~~Dp~~Ik~lKLeIL~~La~e~Nv----  311 (800)
                      ..+...++.-.+ ..+.+|-.+-.....+...-+    ..|.|++ ...+   .+-=.-|.-.|++|-.|+...+.    
T Consensus       215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~---~~kWrtK~aslellg~m~~~ap~qLs~  291 (569)
T KOG1242|consen  215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL---EAKWRTKMASLELLGAMADCAPKQLSL  291 (569)
T ss_pred             HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH---HHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence            444444444443 357888888888877765444    2333332 1111   11124667778888888876654    


Q ss_pred             --HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCC-ccHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHHH
Q 003722          312 --SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI  388 (800)
Q Consensus       312 --~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p-~~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~I  388 (800)
                        +.|+..+.+=+.|.+++++..++.+|-++..... .....++..|++-+.-.            ...+.+++.   .|
T Consensus       292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp------------~~~~~e~~~---~L  356 (569)
T KOG1242|consen  292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADP------------SCYTPECLD---SL  356 (569)
T ss_pred             HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCc------------ccchHHHHH---hh
Confidence              6799999999999999999999999988887663 45667778888766421            112444432   23


Q ss_pred             HHh------CCcchHHHHHHHHHhhhccChhhHHHHHHhhhccccCCCC----CCcchHHHHHHHHHhhhccCcHHHHHH
Q 003722          389 IKQ------DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV----KIPRMLTTVLKYLAWCFKSEAVETKLQ  458 (800)
Q Consensus       389 l~~------~P~~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~~----~ip~i~~dvLr~l~~~F~~E~~~VKlq  458 (800)
                      .+.      .+.....++..|-+-+..=..+.=|.+ +=++|--|.+.+    ..| +++.++.-+-..+.+--++||.-
T Consensus       357 ~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t-~~IidNm~~LveDp~~lap-fl~~Llp~lk~~~~d~~PEvR~v  434 (569)
T KOG1242|consen  357 GATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKT-AIIIDNMCKLVEDPKDLAP-FLPSLLPGLKENLDDAVPEVRAV  434 (569)
T ss_pred             cceeeeeeecchhHHHHHHHHHHHHhhccchhhhhH-HHHHHHHHHhhcCHHHHhh-hHHHHhhHHHHHhcCCChhHHHH
Confidence            322      233334445555555543221111222 223333333221    123 34555555555555556889988


Q ss_pred             HHHHHHHHHhh
Q 003722          459 ILNTTIKVLLC  469 (800)
Q Consensus       459 ILta~aKL~~~  469 (800)
                      ..-+..++.-+
T Consensus       435 aarAL~~l~e~  445 (569)
T KOG1242|consen  435 AARALGALLER  445 (569)
T ss_pred             HHHHHHHHHHH
Confidence            88877776543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.20  E-value=37  Score=41.50  Aligned_cols=184  Identities=16%  Similarity=0.238  Sum_probs=111.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceeccCCc-hHHHHHHHHHHHhhcCCC
Q 003722          232 HWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTES  309 (800)
Q Consensus       232 ~~~l~p~~~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~~~Dp-~~Ik~lKLeIL~~La~e~  309 (800)
                      +-+|.--.++..+.+.++..+.. +-+.+-++.-.+...+...|..-.-....|.--+.|+ .-||.+++..+..+.-+.
T Consensus        38 Ia~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~  117 (734)
T KOG1061|consen   38 IAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK  117 (734)
T ss_pred             HhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH
Confidence            33443335566666666666643 3444444444444445566654333333333334454 579999999999998888


Q ss_pred             CHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhCCc--cHHHHHHHHHHHHHhhhccccccCCCCCCchhHhHHHHHHH
Q 003722          310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK--MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKS  387 (800)
Q Consensus       310 Nv~~Il~EL~~Yv~~~d~~f~~~aI~aIg~lA~k~p~--~a~~~l~~LL~LL~~~~~~~~~~~~~~~~~vv~E~V~vi~~  387 (800)
                      =++.+.+.|...+++.+...++.++..+..+-..-+.  .....++.|-+++..           .+..||+-|+-.+..
T Consensus       118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D-----------~~p~VVAnAlaaL~e  186 (734)
T KOG1061|consen  118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSD-----------SNPMVVANALAALSE  186 (734)
T ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcC-----------CCchHHHHHHHHHHH
Confidence            8899999999999988877766666555554443332  122345555555541           234578888888999


Q ss_pred             HHHhCCc-----chHHHHHHHHHhhhccChhhHHHHHHhhhcccc
Q 003722          388 IIKQDPS-----CHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYS  427 (800)
Q Consensus       388 Il~~~P~-----~~~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~  427 (800)
                      |...+|+     .....+.++...+..+++ =+++.|+=.+-+|-
T Consensus       187 I~e~~~~~~~~~l~~~~~~~lL~al~ec~E-W~qi~IL~~l~~y~  230 (734)
T KOG1061|consen  187 IHESHPSVNLLELNPQLINKLLEALNECTE-WGQIFILDCLAEYV  230 (734)
T ss_pred             HHHhCCCCCcccccHHHHHHHHHHHHHhhh-hhHHHHHHHHHhcC
Confidence            9888874     233445566665555533 24455555555664

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=81.16  E-value=1.3e+02  Score=36.03  Aligned_cols=254  Identities=15%  Similarity=0.150  Sum_probs=136.9

Q ss_pred             ChHHHHHHHHHHH----hcCCH---------HHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHHhCCcccccccccc
Q 003722          221 NSAVVLAAAGVHW----IMSPK---------EDVKRIVKPLLFI---LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDF  284 (800)
Q Consensus       221 NsAVVlaaa~~~~----~l~p~---------~~l~~~v~pLv~L---L~s~~ei~yvvL~~I~~L~~~~p~lF~~~l~~F  284 (800)
                      +|-++.+|...+.    |+++.         .....+++.|+.-   ..+..|.|-.....+-+|+...|+...+-+-.|
T Consensus       463 ~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~  542 (858)
T COG5215         463 CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGF  542 (858)
T ss_pred             cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence            4556666665544    33331         1234566666532   234677888888888888888898888877777


Q ss_pred             eeccCCchHHHHHHHH----HHH-hhcCCCCHHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHhhCCccHHHHHHHHHHH
Q 003722          285 FVSSSDSYQSKALKLE----ILS-SIVTESSISSVFKEFQD-YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL  358 (800)
Q Consensus       285 fi~~~Dp~~Ik~lKLe----IL~-~La~e~Nv~~Il~EL~~-Yv~~~d~~f~~~aI~aIg~lA~k~p~~a~~~l~~LL~L  358 (800)
                      |       .+-..||+    ++. .|++++-  ..++||+. |+.     +....|++-+   ..+.++.+..+..++++
T Consensus       543 ~-------~~~~~kl~~~isv~~q~l~~eD~--~~~~elqSN~~~-----vl~aiir~~~---~~ie~v~D~lm~Lf~r~  605 (858)
T COG5215         543 Y-------DYTSKKLDECISVLGQILATEDQ--LLVEELQSNYIG-----VLEAIIRTRR---RDIEDVEDQLMELFIRI  605 (858)
T ss_pred             H-------HHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHH-----HHHHHHHhcC---CCcccHHHHHHHHHHHH
Confidence            5       23344554    222 1233332  23677764 433     2222222222   12356788899999999


Q ss_pred             HHhhhccccccCCCCCCchh-HhHHHHHHHHHHhCCcch----HHHHHHHHHhhhccChhhHHHHHHhhhccccCCC-CC
Q 003722          359 IRQELLTSDIESGNGEADVL-IQSIISIKSIIKQDPSCH----EKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVG-VK  432 (800)
Q Consensus       359 L~~~~~~~~~~~~~~~~~vv-~E~V~vi~~Il~~~P~~~----~~~i~~L~~~ld~i~~p~ArasiiWLlGEy~~~~-~~  432 (800)
                      |+..           +..++ -+....|-.+...-.+.+    .+.++.|.+.+ ..++.....+.+=++|.-++.. +.
T Consensus       606 les~-----------~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvgdlantl~~d  673 (858)
T COG5215         606 LEST-----------KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVGDLANTLGTD  673 (858)
T ss_pred             Hhcc-----------CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHHHHHHHhhhh
Confidence            8752           11122 223334444443222233    34566666666 4555556666688888876532 22


Q ss_pred             CcchHHHHHHHHHhhhccC--cHHHHHHHHHHHHHHHhhcCCCCh----HHHHHHHHHHHHHHccCCC---hHHHhHHHH
Q 003722          433 IPRMLTTVLKYLAWCFKSE--AVETKLQILNTTIKVLLCAKGGDM----WTITRLFSYLLELAECDLN---YDVRDRARF  503 (800)
Q Consensus       433 ip~i~~dvLr~l~~~F~~E--~~~VKlqILta~aKL~~~~p~e~~----~~l~~L~q~vl~la~~D~n---~DVRDRAr~  503 (800)
                      +...+.++...|+.....+  +..+|-.||..+.-+.+.-.. .+    +++--|||.+-++-....+   .|.|+.++.
T Consensus       674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga-~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~  752 (858)
T COG5215         674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA-NFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQ  752 (858)
T ss_pred             HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHH
Confidence            2222556666777666655  357898999888777654321 11    2233345544333222212   467777765


Q ss_pred             H
Q 003722          504 F  504 (800)
Q Consensus       504 y  504 (800)
                      .
T Consensus       753 ~  753 (858)
T COG5215         753 L  753 (858)
T ss_pred             H
Confidence            4

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=81.02  E-value=55  Score=34.60  Aligned_cols=125  Identities=14%  Similarity=0.108  Sum_probs=80.0

Q ss_pred             hccCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHhCCcccccccccceec-----
Q 003722          216 LLWSHNSAVVLAAAGVHWIMSPKE--DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS-----  287 (800)
Q Consensus       216 LL~S~NsAVVlaaa~~~~~l~p~~--~l~~~v~pLv~LL~s-~~ei~yvvL~~I~~L~~~~p~lF~~~l~~Ffi~-----  287 (800)
                      +-+..++.++....++...++...  ....+.+.|..|... ..+.+|+.++-+..+-...+..| ++++.|...     
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~   87 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRI   87 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhc
Confidence            556778888888888877765433  344566666667654 45678999999999999999887 666644333     


Q ss_pred             ----cCCchHHHHHHHH---HHHhh--cCCCCHHHHHHHHHHhh-hcCChhHHHHHHHHHHHHHh
Q 003722          288 ----SSDSYQSKALKLE---ILSSI--VTESSISSVFKEFQDYI-RDPDRRFAADTVAAIGLCAR  342 (800)
Q Consensus       288 ----~~Dp~~Ik~lKLe---IL~~L--a~e~Nv~~Il~EL~~Yv-~~~d~~f~~~aI~aIg~lA~  342 (800)
                          .++.. -....+.   -+..+  ..++...+++..+...+ .+.+...+.-++.+|..+..
T Consensus        88 ~~~~~~~~~-~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~  151 (234)
T PF12530_consen   88 PSSFSSKDE-FWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE  151 (234)
T ss_pred             ccccCCCcc-hHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence                11111 1111111   11111  23557788888888888 56666677777888887773

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=80.89  E-value=21  Score=42.36  Aligned_cols=158  Identities=21%  Similarity=0.214  Sum_probs=101.3

Q ss_pred             CchhhHHHHHHHHHHhhcCch-hhHHHHHHHHHHHhc----CCCccHHHHHHHHHHHh-C---CCcccchhHHHHHHHHh
Q 003722           25 SVFVRKCAANALPKLHELRQE-EITSAIEEIVGILLN----DRSPGVVGAAAAAFASI-C---PNNFTLIGRNYRNLCQI   95 (800)
Q Consensus        25 sPYVRK~AA~AI~Kly~ldpe-~~~~~L~~~l~~LL~----D~dp~Vv~aAl~Af~eI-c---P~~~~Lih~~yr~Lc~~   95 (800)
                      ++=-||.    +.+++.+--+ ....++...+.+.|.    ...|.-+..-+.+|.+. .   |+..+++.+.++++++-
T Consensus        24 ~aGhrk~----~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg   99 (885)
T COG5218          24 SAGHRKS----LAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRG   99 (885)
T ss_pred             hhhHHHH----HHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhc
Confidence            4445665    5566665332 344556666666662    44555566666677773 2   55678899999999998


Q ss_pred             CCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhhccCCCcccccccccccccCCCCCCCcchhhhhhhhhhhhccc
Q 003722           96 LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGL  175 (800)
Q Consensus        96 L~d~dEWgQi~iL~lL~rY~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (800)
                      +..-|---.--.+++|++..-    -++                                                    
T Consensus       100 ~eskdk~VR~r~lqila~~~d----~v~----------------------------------------------------  123 (885)
T COG5218         100 TESKDKKVRKRSLQILALLSD----VVR----------------------------------------------------  123 (885)
T ss_pred             ccCcchhHHHHHHHHHHHHHH----hcc----------------------------------------------------
Confidence            877776666666666666531    000                                                    


Q ss_pred             ccccccCCCccccccccccccccCCCCChhH-HHHHHhhhhhccCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHh
Q 003722          176 GEYLTRSSDTNARSSDLNGARFTSGKTNDDV-KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDVKRIVKPLLFIL  252 (800)
Q Consensus       176 de~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl-~lLL~~~~pLL~S~NsAVVlaaa~~~~~l~p--~~~l~~~v~pLv~LL  252 (800)
                                               ++|+++ ..|+..+...+.-|-++|-.+|+.++.++..  ...=.++++.|+.++
T Consensus       124 -------------------------eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~v  178 (885)
T COG5218         124 -------------------------EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIV  178 (885)
T ss_pred             -------------------------hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence                                     133333 4577778888889999999999999876532  122245566667777


Q ss_pred             cCC--CcchHHHHHHHH
Q 003722          253 RSS--GASKYVVLCNIQ  267 (800)
Q Consensus       253 ~s~--~ei~yvvL~~I~  267 (800)
                      ..+  .|+|-.+|-+|.
T Consensus       179 qnDPS~EVRr~allni~  195 (885)
T COG5218         179 QNDPSDEVRRLALLNIS  195 (885)
T ss_pred             hcCcHHHHHHHHHHHee
Confidence            653  478888877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	800
1w63_B	584	Ap1 Clathrin Adaptor Core Length = 584		5e-19
2xa7_B	592	Ap2 Clathrin Adaptor Core In Active Complex With Ca		9e-19
2vgl_B	591	Ap2 Clathrin Adaptor Core Length = 591		1e-18

>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 133/308 (43%), Gaps = 27/308 (8%)
Query: 213 TSPLLWSHNSAVVLAAAGVHW----IMSPKED-----VKRIVKPLLFILRSSGASKYVVL 263
            +P L   NSAVVL+A  V      ++S   D     +K++  PL+ +L +    +YV L
Sbjct: 244 VTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATLLKKLAPPLVTLLSAEPEPQYVPL 303
Query: 264 CNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXFKEFQDYIR 323
            NI +  +  P +     + FFV  +D    K  K                  E ++Y  
Sbjct: 304 RNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363
Query: 324 DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLXXXXX 383
           + D  F    V AIG CA K+ + A  CV  LL LI+ ++     E+     D+      
Sbjct: 364 EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKY-- 421
Query: 384 XXXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY 443
                    P+ +E VI  L  +LDS   PEAR  +IW+VGEY+        +L + L  
Sbjct: 422 ---------PNKYESVIATLCENLDSDDEPEARAAMIWIVGEYAERSDNADELLESFLD- 471
Query: 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARF 503
               F  E+ + +LQ+L   +K+ L         + ++ S  L   + D N D+RDR   
Sbjct: 472 ---GFHDESTQVQLQLLTAIVKLFLKKPTETQELVQQVLS--LATQDSD-NPDLRDRGYI 525
Query: 504 FKKLFSHN 511
           + +L S +
Sbjct: 526 YWRLLSTD 533

>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 132/306 (43%), Gaps = 27/306 (8%)
Query: 213 TSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFILRSSGASKYVVL 263
            +P L   NSAVVL+A  V      + PK+       +K++  PL+ +L      +YV L
Sbjct: 244 VTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVAL 303
Query: 264 CNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXFKEFQDYIR 323
            NI +  +  P +     + FFV  +D    K  K                  E ++Y  
Sbjct: 304 RNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363
Query: 324 DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLXXXXX 383
           + D  F    V AIG CA K+ + A  CV  LL LI+ ++     E+     D+      
Sbjct: 364 EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY-- 421
Query: 384 XXXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY 443
                    P+ +E +I  L  +LDS+  P+AR  +IW+VGEY+        +L + L+ 
Sbjct: 422 ---------PNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLE- 471
Query: 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARF 503
               F  E+ + +L +L   +K+ L         + ++ S  L   + D N D+RDR   
Sbjct: 472 ---GFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLS--LATQDSD-NPDLRDRGYI 525
Query: 504 FKKLFS 509
           + +L S
Sbjct: 526 YWRLLS 531

>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 132/306 (43%), Gaps = 27/306 (8%)
Query: 213 TSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFILRSSGASKYVVL 263
            +P L   NSAVVL+A  V      + PK+       +K++  PL+ +L      +YV L
Sbjct: 244 VTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVAL 303
Query: 264 CNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXFKEFQDYIR 323
            NI +  +  P +     + FFV  +D    K  K                  E ++Y  
Sbjct: 304 RNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363
Query: 324 DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLXXXXX 383
           + D  F    V AIG CA K+ + A  CV  LL LI+ ++     E+     D+      
Sbjct: 364 EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY-- 421
Query: 384 XXXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY 443
                    P+ +E +I  L  +LDS+  P+AR  +IW+VGEY+        +L + L+ 
Sbjct: 422 ---------PNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLE- 471
Query: 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARF 503
               F  E+ + +L +L   +K+ L         + ++ S  L   + D N D+RDR   
Sbjct: 472 ---GFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLS--LATQDSD-NPDLRDRGYI 525
Query: 504 FKKLFS 509
           + +L S
Sbjct: 526 YWRLLS 531

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	800
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	1e-61
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	3e-32
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	8e-27
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	2e-10
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	9e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-04

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score =  217 bits (555), Expect = 1e-61
 Identities = 119/499 (23%), Positives = 214/499 (42%), Gaps = 72/499 (14%)

Query: 23  DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF 82
           DP+  +R   A A+  +  +R ++IT  + E +   L D  P V   AA   A +   N 
Sbjct: 97  DPNPLIR---ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN- 152

Query: 83  TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDV 142
                           + E      ++ L   +  S+ +V  + +++L  I  SH   ++
Sbjct: 153 --------------AQMVEDQG--FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196

Query: 143 FDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKT 202
            D+N    +  + +    +E   +        + + L+  +  + R              
Sbjct: 197 LDLNPQNINKLLTALNECTEWGQIF-------ILDCLSNYNPKDDR-------------- 235

Query: 203 NDDVKLLLQCTSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFILR 253
             + + + +  +P L   NSAVVL+A  V      + PK+       +K++  PL+ +L 
Sbjct: 236 --EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS 293

Query: 254 SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS 313
                +YV L NI +  +  P +     + FFV  +D    K  KL+I+  + ++++I+ 
Sbjct: 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353

Query: 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNG 373
           V  E ++Y  + D  F    V AIG CA K+ + A  CV  LL LI+             
Sbjct: 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ-----------TK 402

Query: 374 EADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKI 433
              V+ ++I+ I+ I ++ P+ +E +I  L  +LDS+  P+AR  +IW+VGEY+      
Sbjct: 403 VNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA 462

Query: 434 PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECD- 492
                 +L+     F  E+ + +L +L   +K+ L            L   +L LA  D 
Sbjct: 463 DE----LLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS----ETQELVQQVLSLATQDS 514

Query: 493 LNYDVRDRARFFKKLFSHN 511
            N D+RDR   + +L S +
Sbjct: 515 DNPDLRDRGYIYWRLLSTD 533

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621

 Score =  132 bits (333), Expect = 3e-32
 Identities = 80/521 (15%), Positives = 166/521 (31%), Gaps = 75/521 (14%)

Query: 1   MAGIRLHVISPLVLVAVGKC--ARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGI 57
           +A +    ++      + K   A D    V++ AA  L +L+    + +        V  
Sbjct: 135 IANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVH 194

Query: 58  LLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVA 117
           LLND+  GVV AA +   ++   N      +       L  +       L +    +V A
Sbjct: 195 LLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254

Query: 118 SHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE 177
               VK  ++  L C            +   LE                           
Sbjct: 255 PWLSVK--LLRLLQCYPPPEDPAVRGRLTECLET-------------------------- 286

Query: 178 YLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237
            +   +    +S  +         +N    +L +  S                +    S 
Sbjct: 287 -ILNKAQEPPKSKKVQ-------HSNAKNAVLFEAIS---------------LIIHHDSE 323

Query: 238 KEDVKRIVKPLLFILRSSGAS-KYVVLCNIQ--VFAKALPHLFVPHYED--FFVSSSDSY 292
              + R    L   L+    + +Y+ L ++     ++        H E     + +    
Sbjct: 324 PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDV 383

Query: 293 QSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCV 352
             +   +++L ++   S+   +  E   Y+   D     + V  + + A K        V
Sbjct: 384 SVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYV 443

Query: 353 EGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKV 412
           + +L LIR         +G+    V  +    +  I+             +F +L +   
Sbjct: 444 DTILNLIR--------IAGD---YVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPAC 492

Query: 413 PEARVMI-IWMVGEYSSVGVKIPRMLTTVLKYLAW-CFKSEAVETKLQILNTTIKVLLCA 470
            E  V +  +++GE+ ++    PR    +   L    F   +V T+  +L+T IK  +  
Sbjct: 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIK-FVNL 551

Query: 471 KGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511
                 TI  +     +L   + + +++ RA  + +L +  
Sbjct: 552 FPEVKATIQDVLRSDSQLK--NADVELQQRAVEYLRLSTVA 590

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score =  115 bits (289), Expect = 8e-27
 Identities = 75/512 (14%), Positives = 172/512 (33%), Gaps = 74/512 (14%)

Query: 23  DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF 82
             + FV+  A   L  +      E+   +   V  LL   +  +   AA           
Sbjct: 118 HSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVH------ 168

Query: 83  TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCI-----ESSH 137
                    + + +P++ E        +L       +  V  + +  L  +     +   
Sbjct: 169 ---------VIRKVPELMEMFLPATKNLLNE----KNHGVLHTSVVLLTEMCERSPDMLA 215

Query: 138 SEKDVFDVNVALEDNGIPSRTYDSELVNLVS----RSYIEGLGEYLTRSSDTNARSSDLN 193
             + +    V +  N I S       V+ +S    +  I  L   L R+ D ++      
Sbjct: 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE----- 270

Query: 194 GARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILR 253
                    ND +  +   T       N+ +      +  I S        +  L   L 
Sbjct: 271 -------AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLL 323

Query: 254 SSGAS-KYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQS-KALKLEILSSIVTESSI 311
           ++  + +YV L ++    +   +    H         D   S K   +E+  ++V  ++I
Sbjct: 324 NNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI 383

Query: 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371
             + KE   ++   +  F AD  + I L A K        ++ ++ ++          +G
Sbjct: 384 RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLT--------TAG 435

Query: 372 NGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL--DSIKVPEARVMIIWMVGEYSSV 429
           +    V   ++ ++  +I      H   + +L++++  D  + P  +V   W +GEY  +
Sbjct: 436 S---YVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVA-AWCIGEYGDL 491

Query: 430 GVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFS------ 483
            V         ++      + E ++    +L + +   +  +G  +  I +L +      
Sbjct: 492 LVSGQCEEEEPIQ----VTEDEVLDILESVLISNMSTSV-TRGYALTAIMKLSTRFTCTV 546

Query: 484 ----YLLELAECDLNYDVRDRARFFKKLFSHN 511
                ++ +    ++ +++ RA  +  LF   
Sbjct: 547 NRIKKVVSIYGSSIDVELQQRAVEYNALFKKY 578

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           +  +    +   +   V K  +  + ++RK AA     +     E +   +      LLN
Sbjct: 131 LGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATK-NLLN 189

Query: 61  DRSPGVVGAAAAAFASIC---PNNFTLIGRNYRNLCQILPDVE---------------EW 102
           +++ GV+  +      +C   P+      +    L +IL ++                 +
Sbjct: 190 EKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249

Query: 103 GQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE 162
            Q+ ++ +L           +           ++ + K+V +  +      I     +S 
Sbjct: 250 LQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESG 309

Query: 163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLN 193
           L  L        L      ++D N R   L 
Sbjct: 310 LRVLAINILGRFL-----LNNDKNIRYVALT 335

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 3e-14
 Identities = 95/604 (15%), Positives = 184/604 (30%), Gaps = 174/604 (28%)

Query: 89  YRNLCQI-LPDVEEWGQILLIEILLRYVVAS----HGLVKESIMSSLL----CIESSHSE 139
           Y+++  +      +      ++ + + +++     H ++ +  +S  L     + S   E
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 140 K-DVFDVNVALEDN------GIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDL 192
               F V   L  N       I +      ++   +R YIE       R  + N   +  
Sbjct: 78  MVQKF-VEEVLRINYKFLMSPIKTEQRQPSMM---TRMYIE----QRDRLYNDNQVFAKY 129

Query: 193 NGARFTSGKTNDDVKLLLQCTSPLLWSHNSAV---------VLAAA-------------G 230
           N +R    +    ++  L    P   + N  +          +A                
Sbjct: 130 NVSRL---QPYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 231 VHWI-----MSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQV----FAKALPHLFV-PH 280
           + W+      SP+  ++ + K LL+ +  +  S+     NI++        L  L     
Sbjct: 184 IFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 281 YE-------DFFVSSSDSYQSKALKLEIL----SSIVTESSISSVFKEFQDYIRDPDRRF 329
           YE       +  V ++ ++ +  L  +IL       VT+   ++        +       
Sbjct: 243 YENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTL 298

Query: 330 AADTVAAIGLCAR-------KLPKMANTCVEGLLALI----RQELLTSD-IESGNGEADV 377
             D      L  +        LP+   T     L++I    R  L T D  +  N +   
Sbjct: 299 TPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-- 354

Query: 378 LIQSIISIKSIIKQDPSCHEKVIIQLFRSL----DSIKVPEARVMIIWMVGEYSSVGVKI 433
            + +II   S+   +P+ +     ++F  L     S  +P   + +IW            
Sbjct: 355 -LTTIIE-SSLNVLEPAEYR----KMFDRLSVFPPSAHIPTILLSLIWFDVIK------- 401

Query: 434 PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFS-YLLELAECD 492
                              V     ++N   K  L  K     TI  + S YL    + +
Sbjct: 402 -----------------SDVM---VVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLE 440

Query: 493 LNYD----VRDRARFFKKLFSHNLCSQVPEE-----------TNALQENKD--LPLVLVE 535
             Y     + D     K   S +L      +            N     +     +V ++
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 536 CIFRKQE------NLAASEPIND-----RFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDD 584
             F +Q+         AS  I +     +FY P     I  +  P YE        L + 
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP----YICDN-DPKYE-------RLVNA 547

Query: 585 LGQF 588
           +  F
Sbjct: 548 ILDF 551

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 18/191 (9%), Positives = 51/191 (26%), Gaps = 17/191 (8%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           +  I    +   +   + +   D    V   A  +   L +   + +   + E      +
Sbjct: 128 LCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQE-AAS 186

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVE---EWGQILLIEILLRYVVA 117
             +  V   A      +  N+          +            +   ++I +  R +  
Sbjct: 187 SDNIMVQYHALGLLYHVRKND----RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLED 242

Query: 118 SHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE 177
             G     +   +     +  E  V++   A+    +      ++ +       +  L  
Sbjct: 243 EDGSRDSPLFDFIESCLRNKHEMVVYEAASAI----VNLPGCSAKELAPA----VSVLQL 294

Query: 178 YLTRSSDTNAR 188
           + + S     R
Sbjct: 295 FCS-SPKAALR 304

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 46/311 (14%), Positives = 86/311 (27%), Gaps = 57/311 (18%)

Query: 6   LHVISPLVLVAVGKCARD---PSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDR 62
           +  I+  V++      +D        R  A  AL ++ +     +  AIE  +   + D+
Sbjct: 95  MSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITD---STMLQAIERYMKQAIVDK 151

Query: 63  SPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLV 122
            P V  +A  +   +   +F ++ R      +                    +V  H L 
Sbjct: 152 VPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDN-------------IMVQYHAL- 197

Query: 123 KESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRS 182
                  LL     +    V  +      +G+ S               I      L   
Sbjct: 198 ------GLLYHVRKNDRLAVSKMISKFTRHGLKS--------PFAYCMMIRVASRQLEDE 243

Query: 183 SDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAG--VHWIMSPKED 240
             +                       L       L + +  VV  AA   V+      ++
Sbjct: 244 DGSRDSP-------------------LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE 284

Query: 241 VKRIVKPLLFILRSSGAS-KYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQS-KALK 298
           +   V  L     S  A+ +Y  +  +   A   P        D     +D+ +S   L 
Sbjct: 285 LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLA 344

Query: 299 LEILSSIVTES 309
           +  L    +E 
Sbjct: 345 ITTLLKTGSEG 355

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 16/99 (16%), Positives = 36/99 (36%)

Query: 13  VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAA 72
           VL  + +   D    V K A + +  + + R++     ++++  +L    +  +    A 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAK 92

Query: 73  AFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEIL 111
           AF  +      L+      L       +E  +I +   L
Sbjct: 93  AFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYAL 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	800
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	8e-45
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-44
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-05

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 7e-05
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 8   VISPLVLVAVGKCARDPSVFVRKCAANALPKL-HELRQEEITSAIEEIVGILLNDRSPGV 66
           + +  +L  V + A DP   VR   A +L K+   L    + S ++ I+  L  D+   V
Sbjct: 515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDV 574

Query: 67  VGAAAAAFASI 77
              A  A   +
Sbjct: 575 KYFAQEALTVL 585

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	800
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	100.0
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.33
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.14
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.09
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.03
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.02
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.78
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.53
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.52
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.51
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.42
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.32
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.23
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.51
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.42
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.23
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.98
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.91
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.51
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.48
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1e42a1	120	Beta2-adaptin AP2 ear domain, N-terminal subdomain	94.09
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	93.53
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.76
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	86.21
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	84.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	83.75

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1e-09  Score=91.38  Aligned_cols=281  Identities=13%  Similarity=0.068  Sum_probs=143.2

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC-----CCCCCHHH
Q ss_conf             9999851389990056999999999740-27024288899999988128992079999999998597-----86212169
Q 003722           14 LVAVGKCARDPSVFVRKCAANALPKLHE-LRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP-----NNFTLIGR   87 (800)
Q Consensus        14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~-ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP-----~~~~Lih~   87 (800)
                      +..+.+.+.+.++.||..|+..+..+-. +.|+.....+++.+..++.|.+. |...++.++-++.+     +....+-+
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~e-v~~~~~~~l~~~~~~~~~~~~~~~ll~   90 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTTLVGGPEYVHCLLP   90 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHH-HHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999998669998999999999999999849174599999999998658689-999999999999987487468999999


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HH
Q ss_conf             999999748999921499999999963321136641122---22332201578752100000001138999977641-23
Q 003722           88 NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESI---MSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDS-EL  163 (800)
Q Consensus        88 ~yr~Lc~~L~d~dEWgQi~iL~lL~rY~r~~~~~~~p~~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  163 (800)
                      .+   ..++.+-+.--+-..++.|...+..-    .+..   .+......              +-..    ..... ..
T Consensus        91 ~l---~~l~~~~~~~Vr~~a~~~l~~i~~~~----~~~~~~~~l~p~i~~--------------L~~~----~~~~~r~~  145 (588)
T d1b3ua_          91 PL---ESLATVEETVVRDKAVESLRAISHEH----SPSDLEAHFVPLVKR--------------LAGG----DWFTSRTS  145 (588)
T ss_dssp             HH---HHHTTSSCHHHHHHHHHHHHHHHTTS----CHHHHHHTHHHHHHH--------------HHTC----SSHHHHHH
T ss_pred             HH---HHHCCCCCHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH--------------HHCC----CCHHHHHH
T ss_conf             99---99806998899999999999999867----988899999999999--------------8646----31479999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHH
Q ss_conf             4321011002543211347775555666556644689887469999996311004889599999999998169---9788
Q 003722          164 VNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PKED  240 (800)
Q Consensus       164 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~---p~~~  240 (800)
                      +..+....+.                          .........++..+..+++..++.|--+++..+..++   +...
T Consensus       146 a~~ll~~~~~--------------------------~~~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~  199 (588)
T d1b3ua_         146 ACGLFSVCYP--------------------------RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN  199 (588)
T ss_dssp             HGGGHHHHTT--------------------------TSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             9999999999--------------------------86189999999999998516998999999999998998715787


Q ss_pred             HHH-HHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCC-CCCCC-CCCEECCCCC-HHHHHHHHHHHHHHCCCC----CH
Q ss_conf             999-89999987327-8860689999999999769963-00011-3113035895-678999999998405988----79
Q 003722          241 VKR-IVKPLLFILRS-SGASKYVVLCNIQVFAKALPHL-FVPHY-EDFFVSSSDS-YQSKALKLEILSSIVTES----SI  311 (800)
Q Consensus       241 l~~-~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~P~l-f~~~l-~~Ffv~~~Dp-~~Ik~lKLeIL~~L~~e~----Nv  311 (800)
                      ... +...+..+++. ...+|..++..+..++...+.- +...+ ..|.-...|+ ..||....+.|..++..-    ..
T Consensus       200 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~  279 (588)
T d1b3ua_         200 VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK  279 (588)
T ss_dssp             HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999744885246789998887763058889999999999997202356888899998578888776653434


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999833048822899999999999962972
Q 003722          312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK  346 (800)
Q Consensus       312 ~~IL~EL~~Yv~~~D~~f~~~aI~aIg~lA~k~p~  346 (800)
                      ..++.-+...+.+.+.+.+..++.+++.++...+.
T Consensus       280 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~  314 (588)
T d1b3ua_         280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA  314 (588)
T ss_dssp             HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             44168999987213357779999879999998766

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.7e-07  Score=71.90  Aligned_cols=289  Identities=10%  Similarity=0.078  Sum_probs=145.4

Q ss_pred             CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCH
Q ss_conf             020387999998513899900569999999997402-7024288899999988128992079999999998597862121
Q 003722            7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLI   85 (800)
Q Consensus         7 ~~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l-dp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~~~~Li   85 (800)
                      ++-+..++..+...+.|.++.||.+|+.++.++... +++.....+.+++..|..+....+-.+|...+..+.+.--.-.
T Consensus        82 ~~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~  161 (588)
T d1b3ua_          82 PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV  161 (588)
T ss_dssp             GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             46899999999998069988999999999999998679888999999999998646314799999999999999861899


Q ss_pred             HH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             69-99999974899992149999999996332113664112---222332201578752100000001138999977641
Q 003722           86 GR-NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKES---IMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDS  161 (800)
Q Consensus        86 h~-~yr~Lc~~L~d~dEWgQi~iL~lL~rY~r~~~~~~~p~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (800)
                      .. ....+.+++.|-++.-+-.....+..++..-   ..+.   ...+.. .+-             +.++.     ...
T Consensus       162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~---~~~~~~~~l~~~l-~~l-------------~~d~~-----~~v  219 (588)
T d1b3ua_         162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL---ELDNVKSEIIPMF-SNL-------------ASDEQ-----DSV  219 (588)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS---CHHHHHHTHHHHH-HHH-------------HTCSC-----HHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHH-HHH-------------HCCCC-----HHH
T ss_conf             9999999999851699899999999999899871---5787799999999-997-------------44885-----246


Q ss_pred             H--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--
Q ss_conf             2--3432101100254321134777555566655664468988746-9999996311004889599999999998169--
Q 003722          162 E--LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDD-VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--  236 (800)
Q Consensus       162 ~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~D-l~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~--  236 (800)
                      .  ....+. .+..    .                      ..+.+ ...++..+..+++..+..|-.++++++..+.  
T Consensus       220 r~~a~~~l~-~i~~----~----------------------~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~  272 (588)
T d1b3ua_         220 RLLAVEACV-NIAQ----L----------------------LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA  272 (588)
T ss_dssp             HTTHHHHHH-HHHH----H----------------------SCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHH-HHHC----C----------------------CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             789998887-7630----5----------------------888999999999999720235688889999857888877


Q ss_pred             --CHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCC-----CCCC-CCCEECCCCC-HHHHHHHHHHHHHHC
Q ss_conf             --978899989999987327-88606899999999997699630-----0011-3113035895-678999999998405
Q 003722          237 --PKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLF-----VPHY-EDFFVSSSDS-YQSKALKLEILSSIV  306 (800)
Q Consensus       237 --p~~~l~~~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~P~lf-----~~~l-~~Ffv~~~Dp-~~Ik~lKLeIL~~L~  306 (800)
                        +......++..+..++.. .++++-.++..+..++...+.-.     .+.+ ..+.-..+|+ ..+|......+..++
T Consensus       273 ~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~  352 (588)
T d1b3ua_         273 VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             66534344416899998721335777999987999999876655433219999888887613887678999999886554


Q ss_pred             C----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             9----8879999999998330488228999999999999629
Q 003722          307 T----ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKL  344 (800)
Q Consensus       307 ~----e~Nv~~IL~EL~~Yv~~~D~~f~~~aI~aIg~lA~k~  344 (800)
                      .    +.....++..+..++.+.+.+++..++.+++.+...+
T Consensus       353 ~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~  394 (588)
T d1b3ua_         353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             301316788888888999987510222267788888887500

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.3e-06  Score=64.44  Aligned_cols=138  Identities=10%  Similarity=0.068  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CH----HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHC-CCCC
Q ss_conf             9999996311004889599999999998169--97----8899989999987327-8860689999999999769-9630
Q 003722          206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PK----EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLF  277 (800)
Q Consensus       206 l~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~--p~----~~l~~~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~-P~lf  277 (800)
                      +..++..+...+++.+.-+--+|+.++-.++  ..    ..+..++..|+.++++ .+.+|..++..+..++... +...
T Consensus       393 l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~  472 (888)
T d1qbkb_         393 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP  472 (888)
T ss_dssp             HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998875122056899999998643555578774212035567999842699899999999999999998665415


Q ss_pred             CCCC----CCCEECCCC-CHHHHHHHHHHHHHHCC---CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0011----311303589-56789999999984059---88---7999999999833048822899999999999962
Q 003722          278 VPHY----EDFFVSSSD-SYQSKALKLEILSSIVT---ES---SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARK  343 (800)
Q Consensus       278 ~~~l----~~Ffv~~~D-p~~Ik~lKLeIL~~L~~---e~---Nv~~IL~EL~~Yv~~~D~~f~~~aI~aIg~lA~k  343 (800)
                      .+|+    ..++-...| ...|+......|..++.   +.   -+..|+..|.......+..-...+..+++.++..
T Consensus       473 ~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         473 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65545558999988428987899989999999998755311357999999999998600377999999999999986

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.5e-06  Score=64.17  Aligned_cols=79  Identities=18%  Similarity=0.058  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             4699999963110048895999999999981699---7889998999998732-7-886068999999999976996300
Q 003722          204 DDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP---KEDVKRIVKPLLFILR-S-SGASKYVVLCNIQVFAKALPHLFV  278 (800)
Q Consensus       204 ~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~p---~~~l~~~v~pLi~LL~-s-~~eiqyvvL~~I~~l~~~~P~lf~  278 (800)
                      +.+..++..+.+.|.+.+++|--.|+.++-.+..   ...+..++..++..+. + ..+.+-.++..+..++...|..|.
T Consensus       168 ~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~  247 (1207)
T d1u6gc_         168 NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG  247 (1207)
T ss_dssp             TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             77999999999880899989999999999999987799879999999999870599889999999999999987615467


Q ss_pred             CCCC
Q ss_conf             0113
Q 003722          279 PHYE  282 (800)
Q Consensus       279 ~~l~  282 (800)
                      +|+.
T Consensus       248 ~~l~  251 (1207)
T d1u6gc_         248 EYLE  251 (1207)
T ss_dssp             TSCT
T ss_pred             HHHH
T ss_conf             7799

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=6.7e-06  Score=60.70  Aligned_cols=79  Identities=13%  Similarity=0.028  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             69999996311004889599999999998169------9-7889998999998732-78860689999999999769963
Q 003722          205 DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS------P-KEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHL  276 (800)
Q Consensus       205 Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~------p-~~~l~~~v~pLi~LL~-s~~eiqyvvL~~I~~l~~~~P~l  276 (800)
                      -+..++..+.+.+.+.++.|-.+++.++-.++      . ...+..+...++..+. +++.++..+...+..++......
T Consensus       433 ~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~  512 (888)
T d1qbkb_         433 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE  512 (888)
T ss_dssp             THHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             20355679998426998999999999999999986654156554555899998842898789998999999999875531


Q ss_pred             CCCCCCC
Q ss_conf             0001131
Q 003722          277 FVPHYED  283 (800)
Q Consensus       277 f~~~l~~  283 (800)
                      +.||+..
T Consensus       513 l~p~~~~  519 (888)
T d1qbkb_         513 LVPYLAY  519 (888)
T ss_dssp             SGGGHHH
T ss_pred             HHHHHHH
T ss_conf             1357999

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.2e-05  Score=56.54  Aligned_cols=105  Identities=13%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---CCCC------
Q ss_conf             8799999851389990056999999999740270242888999999881289920799999999985---9786------
Q 003722           11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASI---CPNN------   81 (800)
Q Consensus        11 ~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eI---cP~~------   81 (800)
                      .-++..+-+++.|++|-||..|+-|+..+....++.+.+.+.+.+...+.+.+..+-..+..++..+   .|..      
T Consensus        44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~  123 (1207)
T d1u6gc_          44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL  123 (1207)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             99999999996799879999999999999976768669999999999856896326599999999999966320023112


Q ss_pred             -CCCHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHH
Q ss_conf             -2121699999997489999214-999999999633
Q 003722           82 -FTLIGRNYRNLCQILPDVEEWG-QILLIEILLRYV  115 (800)
Q Consensus        82 -~~Lih~~yr~Lc~~L~d~dEWg-Qi~iL~lL~rY~  115 (800)
                       ..+.+.-..+|+..+.....|. +...+++|....
T Consensus       124 ~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~  159 (1207)
T d1u6gc_         124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  159 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             788999999999876347777899999999999999

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.5e-05  Score=56.11  Aligned_cols=236  Identities=12%  Similarity=0.013  Sum_probs=133.1

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC--CCHHHHHH
Q ss_conf             9999985138999005699999999974027024288899999988128992079999999998597862--12169999
Q 003722           13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF--TLIGRNYR   90 (800)
Q Consensus        13 v~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~~~--~Lih~~yr   90 (800)
                      ....+.+++.|.+|.||++|+.++.++-   .    +...+.+..+|.|.++.|...|+.++..+....-  +...+...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~---~----~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~   92 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRG---G----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILN   92 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC---C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHC---C----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             9999998846999999999999998618---8----73999999998099989999999999872022121202299999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99974899992149999999996332113664112222332201578752100000001138999977641234321011
Q 003722           91 NLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS  170 (800)
Q Consensus        91 ~Lc~~L~d~dEWgQi~iL~lL~rY~r~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (800)
                      .  ..+.+-+++-+...+..|.+++....                                                   
T Consensus        93 ~--~~l~d~~~~vr~~a~~aL~~~~~~~~---------------------------------------------------  119 (276)
T d1oyza_          93 N--MALNDKSACVRATAIESTAQRCKKNP---------------------------------------------------  119 (276)
T ss_dssp             H--HHHHCSCHHHHHHHHHHHHHHHHHCG---------------------------------------------------
T ss_pred             H--HHHCCCCHHHHHHHHHHHHHHCCCCC---------------------------------------------------
T ss_conf             9--98669976689999999998702462---------------------------------------------------


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             00254321134777555566655664468988746999999631100488959999999999816997889998999998
Q 003722          171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF  250 (800)
Q Consensus       171 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~p~~~l~~~v~pLi~  250 (800)
                                                       .....++..+...+...++.|..+++..+......    .....++.
T Consensus       120 ---------------------------------~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~----~~~~~l~~  162 (276)
T d1oyza_         120 ---------------------------------IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK----ATIPLLIN  162 (276)
T ss_dssp             ---------------------------------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHH
T ss_pred             ---------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH----HHHHHHHH
T ss_conf             ---------------------------------10189999999986472048999999987410238----89999887


Q ss_pred             HHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             7327-886068999999999976996300011311303589567899999999840598879999999998330488228
Q 003722          251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRF  329 (800)
Q Consensus       251 LL~s-~~eiqyvvL~~I~~l~~~~P~lf~~~l~~Ffv~~~Dp~~Ik~lKLeIL~~L~~e~Nv~~IL~EL~~Yv~~~D~~f  329 (800)
                      ++.. ...++..+...+..+....+ .+.+.+  .....++...++...+..+..+..+..+..+++.+.      |.++
T Consensus       163 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~------d~~v  233 (276)
T d1oyza_         163 LLKDPNGDVRNWAAFAININKYDNS-DIRDCF--VEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK------KNTV  233 (276)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHTCCCH-HHHHHH--HHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT------SSSC
T ss_pred             HCCCCCCHHHHHHHHHHHHHHCCCC-CCCHHH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC------CHHH
T ss_conf             4046640111357778776510211-133166--664110000123332001000000004999999957------9599


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9999999999996297217999999999988
Q 003722          330 AADTVAAIGLCARKLPKMANTCVEGLLALIR  360 (800)
Q Consensus       330 ~~~aI~aIg~lA~k~p~~a~~~L~~Ll~LL~  360 (800)
                      +..++.++|.++.      ..++..|..++.
T Consensus       234 r~~a~~aL~~ig~------~~~~~~L~~~l~  258 (276)
T d1oyza_         234 YDDIIEAAGELGD------KTLLPVLDTMLY  258 (276)
T ss_dssp             CHHHHHHHHHHCC------GGGHHHHHHHHT
T ss_pred             HHHHHHHHHHCCC------HHHHHHHHHHHC
T ss_conf             9999999987599------879999999980

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=7.8e-05  Score=52.16  Aligned_cols=102  Identities=12%  Similarity=0.032  Sum_probs=67.8

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCC----CC
Q ss_conf             99998513899900569999999997402702428-----8899999988128-99207999999999859786----21
Q 003722           14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLND-RSPGVVGAAAAAFASICPNN----FT   83 (800)
Q Consensus        14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~-----~~L~~il~~LL~D-~~p~VvgaAi~Al~eIcP~~----~~   83 (800)
                      +..+-+.+...++.++..|+.++.|+...+.+...     ..+++.+-.+|.+ .++.|...|+.++..+|-..    ..
T Consensus        15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~   94 (434)
T d1q1sc_          15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA   94 (434)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99999987698999999999999998637998329999988899999998746998899999999999986398551047


Q ss_pred             CH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             21-699999997489999214999999999633
Q 003722           84 LI-GRNYRNLCQILPDVEEWGQILLIEILLRYV  115 (800)
Q Consensus        84 Li-h~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~  115 (800)
                      ++ ......|++.|..-++-.+...+..|...+
T Consensus        95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~  127 (434)
T d1q1sc_          95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIA  127 (434)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             664463156664035687999999999999885

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=0.0002  Score=48.85  Aligned_cols=281  Identities=11%  Similarity=0.073  Sum_probs=118.8

Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCH--H---HH--HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCC-----CC
Q ss_conf             1100488959999999999816997--8---89--9989999987327-886068999999999976996300-----01
Q 003722          214 SPLLWSHNSAVVLAAAGVHWIMSPK--E---DV--KRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV-----PH  280 (800)
Q Consensus       214 ~pLLqS~NsAVVlaaa~l~~~l~p~--~---~l--~~~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~P~lf~-----~~  280 (800)
                      ..+|++.+..|...|+.++..++..  .   .+  ..+..+|+.++.+ .++++..+...+..++...+....     +-
T Consensus       168 ~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~  247 (503)
T d1wa5b_         168 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA  247 (503)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             99855997158999999999985411899998874135563012045688899999999999984687420479999999


Q ss_pred             CCCCE-ECCCCCHHHHHHHHHHHHHHCCCC--CHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHH-
Q ss_conf             13113-035895678999999998405988--7999-----99999983304882289999999999996297217999-
Q 003722          281 YEDFF-VSSSDSYQSKALKLEILSSIVTES--SISS-----VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC-  351 (800)
Q Consensus       281 l~~Ff-v~~~Dp~~Ik~lKLeIL~~L~~e~--Nv~~-----IL~EL~~Yv~~~D~~f~~~aI~aIg~lA~k~p~~a~~~-  351 (800)
                      +..+. ...+++..++...+..|..|+...  .+..     ++..|...+.+.+......++.++|.++...+.....+ 
T Consensus       248 l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~  327 (503)
T d1wa5b_         248 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI  327 (503)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999872356389999999998753227711110011223311101102578636445677777778778888787631


Q ss_pred             ----HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH-----HHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             ----99999998832102665678998722476899999998709964499-----999999863103703479977754
Q 003722          352 ----VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWM  422 (800)
Q Consensus       352 ----L~~Ll~LL~~~~~~~~~~~~~~~~~vv~E~I~vi~~Li~~~p~~~~~-----~i~~L~~~ld~i~~p~AkasiiWI  422 (800)
                          +..+..+++..           +..+..+++.++..+...++.....     ++..+++.+..- ++..+...+|.
T Consensus       328 ~~~~l~~l~~ll~~~-----------~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~  395 (503)
T d1wa5b_         328 NAGVLPALRLLLSSP-----------KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWA  395 (503)
T ss_dssp             HTTHHHHHHHHTTCS-----------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCC-----------CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHCCCC-CHHHHHHHHHH
T ss_conf             234099999996399-----------788899998778888614698889999714652367760268-73689999999


Q ss_pred             HCCCCCCCCCCCCHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-------CCCHHHHHH------HHHH
Q ss_conf             235567888772108-----9999998863103709999999999999976257-------988379999------9999
Q 003722          423 VGEYSSVGVKIPRML-----TTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK-------GGDMWTITR------LFSY  484 (800)
Q Consensus       423 lGEY~~~~~~ip~i~-----~dvLr~l~~~F~~E~~~vKlqILta~aKl~~~~p-------~e~~~~i~~------l~qy  484 (800)
                      ++..+......+...     ..++..+..-+......+...+|.+..+++-...       .... ....      .++.
T Consensus       396 l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~-~~~~~iee~g~~~~  474 (503)
T d1wa5b_         396 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN-ENADFIEKAGGMEK  474 (503)
T ss_dssp             HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC-HHHHHHHHTTHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHCCCHHH
T ss_conf             99997365354899999998976999999865998899999999999999988877565302301-89999998877999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             999871299957986899999970
Q 003722          485 LLELAECDLNYDVRDRARFFKKLF  508 (800)
Q Consensus       485 vLela~~D~d~DVRDRAr~y~~LL  508 (800)
                       ++....+.|.+|+++|.......
T Consensus       475 -i~~Lq~~~~~~i~~~A~~il~~~  497 (503)
T d1wa5b_         475 -IFNCQQNENDKIYEKAYKIIETY  497 (503)
T ss_dssp             -HHGGGGCSCHHHHHHHHHHHHHH
T ss_pred             -HHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             -99987699899999999999987

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=7.3e-05  Score=52.37  Aligned_cols=121  Identities=13%  Similarity=0.018  Sum_probs=51.6

Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCC--CCCCCCCCCEECCCC
Q ss_conf             11004889599999999998169978899989999987327-886068999999999976996--300011311303589
Q 003722          214 SPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPH--LFVPHYEDFFVSSSD  290 (800)
Q Consensus       214 ~pLLqS~NsAVVlaaa~l~~~l~p~~~l~~~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~P~--lf~~~l~~Ffv~~~D  290 (800)
                      ..+|.+.|+.|-.+|+..+..+++.    .++..|+.++.. ++.++..+...+..+......  ...+.+.... ..+.
T Consensus        25 ~~~L~d~~~~vR~~A~~~L~~~~~~----~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~~~~-l~d~   99 (276)
T d1oyza_          25 FRLLDDHNSLKRISSARVLQLRGGQ----DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA-LNDK   99 (276)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHCCH----HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHH-HHCS
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HCCC
T ss_conf             9884699999999999999861887----3999999998099989999999999872022121202299999998-6699


Q ss_pred             CHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             5678999999998405988--799999999983304882289999999999
Q 003722          291 SYQSKALKLEILSSIVTES--SISSVFKEFQDYIRDPDRRFAADTVAAIGL  339 (800)
Q Consensus       291 p~~Ik~lKLeIL~~L~~e~--Nv~~IL~EL~~Yv~~~D~~f~~~aI~aIg~  339 (800)
                      ...|+...+..|..+++..  ....++..+..-..+.+..++..++.++|.
T Consensus       100 ~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~  150 (276)
T d1oyza_         100 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV  150 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             766899999999987024621018999999998647204899999998741

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.0039  Score=38.50  Aligned_cols=273  Identities=11%  Similarity=0.072  Sum_probs=150.4

Q ss_pred             CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHCCCC-
Q ss_conf             203879999985138999005699999999974027024----28889999998812-899207999999999859786-
Q 003722            8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLN-DRSPGVVGAAAAAFASICPNN-   81 (800)
Q Consensus         8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~----~~~~L~~il~~LL~-D~~p~VvgaAi~Al~eIcP~~-   81 (800)
                      ++..--+..+.+.++|.++.||+.||.++.++-..++..    ..+.+++.+-.+|. ..++.+...|+.++..+|-+. 
T Consensus        13 ~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~   92 (529)
T d1jdha_          13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE   92 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf             89997999999987299999999999999999845577899987133999999998479999999999999999958916


Q ss_pred             --CCCH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             --2121-6999999974899992149999999996332113664112222332201578752100000001138999977
Q 003722           82 --FTLI-GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT  158 (800)
Q Consensus        82 --~~Li-h~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~r~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (800)
                        ..++ +.....|+++|.+.++..|...+..|...+..... .+.  ++.                             
T Consensus        93 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~--~~~-----------------------------  140 (529)
T d1jdha_          93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKM--AVR-----------------------------  140 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHH--HHH-----------------------------
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH-HHH--HHH-----------------------------
T ss_conf             699999879899999985797989999999999986513201-136--787-----------------------------


Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-
Q ss_conf             6412343210110025432113477755556665566446898874699999963110048895999999999981699-
Q 003722          159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP-  237 (800)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l~p-  237 (800)
                                    +                                 .-.+..+..+|++.+..+...++.++..++. 
T Consensus       141 --------------~---------------------------------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_         141 --------------L---------------------------------AGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             --------------H---------------------------------HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             --------------H---------------------------------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             --------------6---------------------------------58814899988705768888889999887630


Q ss_pred             -HHH-----HHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHCCC----CCCCC-CCCCE-ECCCCCHHHHHHHHHHHH
Q ss_conf             -788-----999899999873278--86068999999999976996----30001-13113-035895678999999998
Q 003722          238 -KED-----VKRIVKPLLFILRSS--GASKYVVLCNIQVFAKALPH----LFVPH-YEDFF-VSSSDSYQSKALKLEILS  303 (800)
Q Consensus       238 -~~~-----l~~~v~pLi~LL~s~--~eiqyvvL~~I~~l~~~~P~----lf~~~-l~~Ff-v~~~Dp~~Ik~lKLeIL~  303 (800)
                       ...     -...+.+|+++++..  ..++..+...+..++. .+.    ++... +..++ ...+++..++...+..|.
T Consensus       174 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~  252 (529)
T d1jdha_         174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             047888887605636899999861048999999998751101-3323304565433346999862540155530156777


Q ss_pred             HHCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHH
Q ss_conf             4059887----999999999833048822899999999999962972179-----99999999988
Q 003722          304 SIVTESS----ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIR  360 (800)
Q Consensus       304 ~L~~e~N----v~~IL~EL~~Yv~~~D~~f~~~aI~aIg~lA~k~p~~a~-----~~L~~Ll~LL~  360 (800)
                      .+.+...    ...++..|...+.+.|.+.+..+..+++.++...+....     ..+..|+.++.
T Consensus       253 ~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~  318 (529)
T d1jdha_         253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL  318 (529)
T ss_dssp             HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HCCCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             504321102566401014454124542889999999887501220378888887500789999998

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.0049  Score=37.66  Aligned_cols=72  Identities=10%  Similarity=0.043  Sum_probs=50.8

Q ss_pred             CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHCC
Q ss_conf             20387999998513899900569999999997402-70242888999999881289-92079999999998597
Q 003722            8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILLNDR-SPGVVGAAAAAFASICP   79 (800)
Q Consensus         8 ~I~~iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~l-dp~~~~~~L~~il~~LL~D~-~p~VvgaAi~Al~eIcP   79 (800)
                      ++.+.+-..+-+++.++++.||+.+|.++.++.+. .|+..-+++.+.+..++.+. +..+..+|+.+|..+|.
T Consensus        91 ~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e  164 (861)
T d2bpta1          91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE  164 (861)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999988399889999999999999997677676388999999985699958999999999999998

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.0077  Score=36.09  Aligned_cols=26  Identities=4%  Similarity=-0.067  Sum_probs=11.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             86068999999999976996300011
Q 003722          256 GASKYVVLCNIQVFAKALPHLFVPHY  281 (800)
Q Consensus       256 ~eiqyvvL~~I~~l~~~~P~lf~~~l  281 (800)
                      ++++-.++..+..++..+|..|.+|+
T Consensus       238 ~~~~~~~~~~l~~i~~~~~~~~~~~l  263 (861)
T d2bpta1         238 IEVQAAAFGCLCKIMSKYYTFMKPYM  263 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999887789999999

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.01  Score=35.20  Aligned_cols=32  Identities=13%  Similarity=0.241  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf             989999987327-88606899999999997699
Q 003722          243 RIVKPLLFILRS-SGASKYVVLCNIQVFAKALP  274 (800)
Q Consensus       243 ~~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~P  274 (800)
                      .++..++..+.. ++.+++.++..+..++...|
T Consensus       408 ~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T d1qgra_         408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             999999986157860899999988999999813

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.013  Score=34.36  Aligned_cols=19  Identities=5%  Similarity=0.034  Sum_probs=6.8

Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q ss_conf             3899900569999999997
Q 003722           21 ARDPSVFVRKCAANALPKL   39 (800)
Q Consensus        21 l~D~sPYVRK~AA~AI~Kl   39 (800)
                      +...++.++..|+.++.|+
T Consensus        85 ~~s~~~~~~~~a~~~~r~~  103 (503)
T d1wa5b_          85 LNSDDMQEQLSATVKFRQI  103 (503)
T ss_dssp             HSCSSHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHH
T ss_conf             6499999999999999999

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.014  Score=33.93  Aligned_cols=56  Identities=16%  Similarity=0.084  Sum_probs=23.9

Q ss_pred             CCHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             9005699999999974027024----2888999999881289920799999999985978
Q 003722           25 SVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN   80 (800)
Q Consensus        25 sPYVRK~AA~AI~Kly~ldp~~----~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~   80 (800)
                      ++.||+.|+.++..+-...++.    .....++.+-.+|...++.+...|+.+|..+|.+
T Consensus        70 ~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~  129 (434)
T d1q1sc_          70 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD  129 (434)
T ss_dssp             GHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             889999999999998639855104766446315666403568799999999999988500

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.51  E-value=0.0053  Score=37.43  Aligned_cols=86  Identities=15%  Similarity=0.092  Sum_probs=46.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             99998513899900569999999997402702428889999998812899207999999999859786212169999999
Q 003722           14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLC   93 (800)
Q Consensus        14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~~~~Lih~~yr~Lc   93 (800)
                      +.++.+++.|.+|+||..|+.++.++.  ++     ..++.+..+|.|.++.|..+|+.++.++.+.+      ....|.
T Consensus        24 ~~~L~~~l~d~~~~vR~~a~~~L~~~~--~~-----~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~~~------~~~~L~   90 (111)
T d1te4a_          24 FEPLLESLSNEDWRIRGAAAWIIGNFQ--DE-----RAVEPLIKLLEDDSGFVRSGAARSLEQIGGER------VRAAME   90 (111)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGC--SH-----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHH------HHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCC--HH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC------HHHHHH
T ss_conf             999999974998789999999987610--12-----32799873302303379999999999867611------499999


Q ss_pred             HHCCCCCHHHHHHHHHHHH
Q ss_conf             7489999214999999999
Q 003722           94 QILPDVEEWGQILLIEILL  112 (800)
Q Consensus        94 ~~L~d~dEWgQi~iL~lL~  112 (800)
                      .++.+-+++-+-..+..|-
T Consensus        91 ~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          91 KLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHTTSCCTHHHHHHHHHGG
T ss_pred             HHHCCCCHHHHHHHHHHHH
T ss_conf             9882998999999999987

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.027  Score=31.69  Aligned_cols=244  Identities=11%  Similarity=0.007  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999963110048--8959999999999816997--------8899989999987327-88606899999999997699
Q 003722          206 VKLLLQCTSPLLWS--HNSAVVLAAAGVHWIMSPK--------EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP  274 (800)
Q Consensus       206 l~lLL~~~~pLLqS--~NsAVVlaaa~l~~~l~p~--------~~l~~~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~P  274 (800)
                      ...++..+...+.+  .+..|..++++++..+...        .........+..++.+ +++++-.++..+..++...|
T Consensus       169 ~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~  248 (458)
T d1ibrb_         169 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  248 (458)
T ss_dssp             HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999998615456799999999999999886132456677777767668877259989999999999999998719


Q ss_pred             CCCCCCCCCCEE------CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
Q ss_conf             630001131130------358956789999999984059887999999999833048------82289999999999996
Q 003722          275 HLFVPHYEDFFV------SSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDP------DRRFAADTVAAIGLCAR  342 (800)
Q Consensus       275 ~lf~~~l~~Ffv------~~~Dp~~Ik~lKLeIL~~L~~e~Nv~~IL~EL~~Yv~~~------D~~f~~~aI~aIg~lA~  342 (800)
                      ..|.+|+...+.      ..++...++...++.+..++...  ..+..+........      ...+....         
T Consensus       249 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  317 (458)
T d1ibrb_         249 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE--MDLAIEASEAAEQGRPPEHTSKFYAKGA---------  317 (458)
T ss_dssp             GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH--HHHHHHHCCTTCSSSCSSCCCCCHHHHH---------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf             99998887789999999843545999999999999989988--9999850367876418999999999988---------


Q ss_pred             HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             29721799999999998832102665678998722476-8999999987099644-999999998631037034799777
Q 003722          343 KLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPSCH-EKVIIQLFRSLDSIKVPEARVMII  420 (800)
Q Consensus       343 k~p~~a~~~L~~Ll~LL~~~~~~~~~~~~~~~~~vv~E-~I~vi~~Li~~~p~~~-~~~i~~L~~~ld~i~~p~Akasii  420 (800)
                           ....+..+...+...    . .....+.+.+.. +...+..+....++.. ..++..+.+.+.+ .++..|.+.+
T Consensus       318 -----~~~l~~~l~~~~~~~----~-~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s-~~~~~r~aal  386 (458)
T d1ibrb_         318 -----LQYLVPILTQTLTKQ----D-ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-PDWRYRDAAV  386 (458)
T ss_dssp             -----HHHHHHHHHHHTTCC----C-SSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC-SSHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHCC----H-HHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_conf             -----998726677640001----0-2101122339999999999998755175566789999998569-9989999999


Q ss_pred             HHHCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             5423556788--87721089999998863103709999999999999976257
Q 003722          421 WMVGEYSSVG--VKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK  471 (800)
Q Consensus       421 WIlGEY~~~~--~~ip~i~~dvLr~l~~~F~~E~~~vKlqILta~aKl~~~~p  471 (800)
                      +.+|..+...  .......++++..+...+.++...||...+.+..++.-..|
T Consensus       387 ~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         387 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999997547767898899999999988489989999999999999999720

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.028  Score=31.62  Aligned_cols=88  Identities=13%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCEEC-CCC-CHHHHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHCCCHH
Q ss_conf             068999999999976996300011311303-589-56789999999984059887-------999999999833048822
Q 003722          258 SKYVVLCNIQVFAKALPHLFVPHYEDFFVS-SSD-SYQSKALKLEILSSIVTESS-------ISSVFKEFQDYIRDPDRR  328 (800)
Q Consensus       258 iqyvvL~~I~~l~~~~P~lf~~~l~~Ffv~-~~D-p~~Ik~lKLeIL~~L~~e~N-------v~~IL~EL~~Yv~~~D~~  328 (800)
                      ++..+...+..++...+..+.+.+..|+.. .++ ....|...+-.+..+.....       ...++..+..++.+.+..
T Consensus       344 ~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~  423 (876)
T d1qgra_         344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV  423 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99999999999998736665355678999860251378889999988766643229889899999999999861578608


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             89999999999996297
Q 003722          329 FAADTVAAIGLCARKLP  345 (800)
Q Consensus       329 f~~~aI~aIg~lA~k~p  345 (800)
                      ++..+..++|+++..++
T Consensus       424 vr~~a~~~l~~~~~~~~  440 (876)
T d1qgra_         424 VRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999988999999813

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.058  Score=29.06  Aligned_cols=255  Identities=11%  Similarity=0.080  Sum_probs=139.8

Q ss_pred             HHHHHHHHCCC-CCCHHHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC---CC-C
Q ss_conf             99999851389-9900569999999997402702-4--28889999998812899207999999999859786---21-2
Q 003722           13 VLVAVGKCARD-PSVFVRKCAANALPKLHELRQE-E--ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FT-L   84 (800)
Q Consensus        13 v~~aIkk~l~D-~sPYVRK~AA~AI~Kly~ldp~-~--~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~~---~~-L   84 (800)
                      ++..+.+.+.+ .++-+|+.|+.++..+..-.+. .  .....++.+-.+|.+.++.|...|+.++..+|-+.   -. +
T Consensus        60 ~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  139 (529)
T d1jdha_          60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV  139 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99999999847999999999999999995891669999987989999998579798999999999998651320113678


Q ss_pred             -HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             -1699999997489999214999999999633211366411222233220157875210000000113899997764123
Q 003722           85 -IGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSEL  163 (800)
Q Consensus        85 -ih~~yr~Lc~~L~d~dEWgQi~iL~lL~rY~r~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (800)
                       ....+..|+.+|..-++=.|......|...+....    +       .+                              
T Consensus       140 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~----~-------~~------------------------------  178 (529)
T d1jdha_         140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ----E-------SK------------------------------  178 (529)
T ss_dssp             HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH----H-------HH------------------------------
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----H-------HH------------------------------
T ss_conf             765881489998870576888888999988763004----7-------88------------------------------


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCH----
Q ss_conf             4321011002543211347775555666556644689887469999996311004-88959999999999816997----
Q 003722          164 VNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLW-SHNSAVVLAAAGVHWIMSPK----  238 (800)
Q Consensus       164 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~Dl~lLL~~~~pLLq-S~NsAVVlaaa~l~~~l~p~----  238 (800)
                      ..+...                                      -.+..+..+++ +....+...++.++..++-.    
T Consensus       179 ~~~~~~--------------------------------------~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~  220 (529)
T d1jdha_         179 LIILAS--------------------------------------GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK  220 (529)
T ss_dssp             HHHHHT--------------------------------------THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHH
T ss_pred             HHHHHC--------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             888760--------------------------------------563689999986104899999999875110133233


Q ss_pred             HHH--HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCE-ECCCCCHHHHHHHHHHHHHHCCCC--C
Q ss_conf             889--9989999987327-8860689999999999769963000--113113-035895678999999998405988--7
Q 003722          239 EDV--KRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVP--HYEDFF-VSSSDSYQSKALKLEILSSIVTES--S  310 (800)
Q Consensus       239 ~~l--~~~v~pLi~LL~s-~~eiqyvvL~~I~~l~~~~P~lf~~--~l~~Ff-v~~~Dp~~Ik~lKLeIL~~L~~e~--N  310 (800)
                      ..+  ...+.+|+.++.+ +.+++..++..+..+.......+..  -+..+. ...+++..++...+.+|..|+..+  |
T Consensus       221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~  300 (529)
T d1jdha_         221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN  300 (529)
T ss_dssp             HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf             04565433346999862540155530156777504321102566401014454124542889999999887501220378


Q ss_pred             HHHHH-----HHHHHHHH--CCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999-----99998330--48822899999999999962972
Q 003722          311 ISSVF-----KEFQDYIR--DPDRRFAADTVAAIGLCARKLPK  346 (800)
Q Consensus       311 v~~IL-----~EL~~Yv~--~~D~~f~~~aI~aIg~lA~k~p~  346 (800)
                      ...+.     .-|...+.  ....+....++.+++.++...+.
T Consensus       301 ~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~  343 (529)
T d1jdha_         301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE  343 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHC
T ss_conf             8888875007899999984001113788999885002200000

>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: Alpha-adaptin ear subdomain-like
domain: Beta2-adaptin AP2 ear domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.035  Score=30.85  Aligned_cols=56  Identities=20%  Similarity=0.311  Sum_probs=48.8

Q ss_pred             CCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCEECEEEEECCC
Q ss_conf             74335740010245688980499973178746899607999997846987400038620333
Q 003722          723 GRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEES  784 (800)
Q Consensus       723 ~~~~~~k~~~ll~~~~g~gl~~~y~f~r~~~~~~~~~v~v~~~~~N~s~~~~~~i~~~~~~~  784 (800)
                      ++|++|| ..||....|+||+|..+|.|+-     .-+.+++.|||++..+|++..|..-+-
T Consensus         1 ~~~~~p~-~~~lp~~~g~GLeI~g~f~r~~-----g~i~l~l~itN~s~~~ls~faIQfNKN   56 (120)
T d1e42a1           1 GGYVAPK-AVWLPAVKAKGLEISGTFTHRQ-----GHIYMEMNFTNKALQHMTDFAIQFNKN   56 (120)
T ss_dssp             CCCCCCC-EEEECGGGTTTEEEEEEEEEET-----TEEEEEEEEEECSSSCBCCCEEEECCB
T ss_pred             CCCCCCE-EEEEECCCCCCEEEEEEEEEEC-----CEEEEEEEEECCCCCCCCHHEEEECCC
T ss_conf             9756860-3871631489679999999719-----999999999617878141213897066

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.53  E-value=0.078  Score=27.99  Aligned_cols=81  Identities=20%  Similarity=0.177  Sum_probs=55.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             38999005699999999974027024288899999988128992079999999998597862121699999997489999
Q 003722           21 ARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVE  100 (800)
Q Consensus        21 l~D~sPYVRK~AA~AI~Kly~ldp~~~~~~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~~~~Lih~~yr~Lc~~L~d~d  100 (800)
                      +.|.+|+||+.|+.++.++   .+ ..   +..+ ..+|.|.++.|-..|+.++-+++...      ....|...|.+-+
T Consensus         1 L~D~~~~VR~~A~~aL~~~---~~-~~---~~~L-~~~l~d~~~~vR~~a~~~L~~~~~~~------~~~~L~~~l~d~~   66 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM---GD-EA---FEPL-LESLSNEDWRIRGAAAWIIGNFQDER------AVEPLIKLLEDDS   66 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC---SS-TT---HHHH-HHGGGCSCHHHHHHHHHHHGGGCSHH------HHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHHHHHHHH---CH-HH---HHHH-HHHHCCCCHHHHHHHHHHHHHCCHHH------HHHHHHHHHCCCH
T ss_conf             9895999999999999873---87-89---9999-99974998789999999987610123------2799873302303


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             214999999999633
Q 003722          101 EWGQILLIEILLRYV  115 (800)
Q Consensus       101 EWgQi~iL~lL~rY~  115 (800)
                      +|-+...+..|.+..
T Consensus        67 ~~VR~~a~~aL~~i~   81 (111)
T d1te4a_          67 GFVRSGAARSLEQIG   81 (111)
T ss_dssp             THHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             379999999999867

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.3  Score=23.35  Aligned_cols=88  Identities=14%  Similarity=-0.008  Sum_probs=46.6

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             79977754235567888772108999999886310370999999999999997625-79883799999999999871299
Q 003722          415 ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCA-KGGDMWTITRLFSYLLELAECDL  493 (800)
Q Consensus       415 AkasiiWIlGEY~~~~~~ip~i~~dvLr~l~~~F~~E~~~vKlqILta~aKl~~~~-p~e~~~~i~~l~qyvLela~~D~  493 (800)
                      .+.+....++..+....  ..+.+.++..+...+..+...+|...+.+..-+.-.. +....+.+..++..++.. ..|.
T Consensus       343 ~~~~a~~~l~~l~~~~~--~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~-l~d~  419 (458)
T d1ibrb_         343 PCKAAGVCLMLLATCCE--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL-MKDP  419 (458)
T ss_dssp             HHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG-GGCS
T ss_pred             HHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HCCC
T ss_conf             99999999999987551--75566789999998569998999999999999997547767898899999999988-4899


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             957986899999
Q 003722          494 NYDVRDRARFFK  505 (800)
Q Consensus       494 d~DVRDRAr~y~  505 (800)
                      ++.||..|..-.
T Consensus       420 ~~~VR~~a~~~l  431 (458)
T d1ibrb_         420 SVVVRDTAAWTV  431 (458)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             899999999999

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.21  E-value=0.69  Score=20.42  Aligned_cols=91  Identities=10%  Similarity=0.101  Sum_probs=37.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHH-----HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH-
Q ss_conf             88228999999999999629721799-----999999998832102665678998722476899999998709964499-
Q 003722          325 PDRRFAADTVAAIGLCARKLPKMANT-----CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-  398 (800)
Q Consensus       325 ~D~~f~~~aI~aIg~lA~k~p~~a~~-----~L~~Ll~LL~~~~~~~~~~~~~~~~~vv~E~I~vi~~Li~~~p~~~~~-  398 (800)
                      .+..++..++.+++.++...+.....     .+..|++++...           +..+...++..+..++..+|..... 
T Consensus       114 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~-----------~~~~~~~a~~~L~~l~~~~~~~~~~~  182 (264)
T d1xqra1         114 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-----------VQKLKVKSAFLLQNLLVGHPEHKGTL  182 (264)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-----------CHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             9899999999999987424402678998720126889988058-----------65788999999999874457788888


Q ss_pred             ----HHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf             ----99999986310370347997775423556
Q 003722          399 ----VIIQLFRSLDSIKVPEARVMIIWMVGEYS  427 (800)
Q Consensus       399 ----~i~~L~~~ld~i~~p~AkasiiWIlGEY~  427 (800)
                          ++..|+..+.+ .++..+...+|.|+.-+
T Consensus       183 ~~~~~v~~L~~lL~~-~~~~~~~~a~~aL~~L~  214 (264)
T d1xqra1         183 CSMGMVQQLVALVRT-EHSPFHEHVLGALCSLV  214 (264)
T ss_dssp             HHTTHHHHHHHHHTS-CCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
T ss_conf             876468999999739-99899999999999998

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.92  E-value=0.78  Score=19.97  Aligned_cols=102  Identities=15%  Similarity=-0.004  Sum_probs=70.3

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC---CH
Q ss_conf             999985138999005699999999974027024288-----8999999881289920799999999985978621---21
Q 003722           14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITS-----AIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT---LI   85 (800)
Q Consensus        14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldp~~~~~-----~L~~il~~LL~D~~p~VvgaAi~Al~eIcP~~~~---Li   85 (800)
                      ++.+-+.+.+.+|-||..||.+|.++-.-++ +.+.     ..++.|-.||.+.++.|..+|+.++..++.+.-+   .+
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             8999998579999999999999999984999-999999988859999998779998999999999999974998889999


Q ss_pred             HH--HHHHHHHHCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf             69--9999997489-9992149999999996332
Q 003722           86 GR--NYRNLCQILP-DVEEWGQILLIEILLRYVV  116 (800)
Q Consensus        86 h~--~yr~Lc~~L~-d~dEWgQi~iL~lL~rY~r  116 (800)
                      ..  ....|++.+. ..++..+.....+|...+.
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             9879828999998433738899999999999986

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.75  E-value=0.87  Score=19.60  Aligned_cols=117  Identities=16%  Similarity=0.169  Sum_probs=53.6

Q ss_pred             HHCCCCCHHHHHHHHHHHHHCCC--HH---HH--HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf             10048895999999999981699--78---89--9989999987327--8860689999999999769963000113113
Q 003722          215 PLLWSHNSAVVLAAAGVHWIMSP--KE---DV--KRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYEDFF  285 (800)
Q Consensus       215 pLLqS~NsAVVlaaa~l~~~l~p--~~---~l--~~~v~pLi~LL~s--~~eiqyvvL~~I~~l~~~~P~lf~~~l~~Ff  285 (800)
                      .+|.|.++.|...|+.++..++.  +.   .+  ..++.+|+.++.+  +++++.-++..+..++...+.....    | 
T Consensus        66 ~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~----~-  140 (264)
T d1xqra1          66 RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ----F-  140 (264)
T ss_dssp             TTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH----H-
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH----H-
T ss_conf             98379999999999999999998888888999972763799999604998999999999999874244026789----9-


Q ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH-----HHHHHHHHHH
Q ss_conf             03589567899999999840598879999999998330488228999999999999629721799-----9999999988
Q 003722          286 VSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANT-----CVEGLLALIR  360 (800)
Q Consensus       286 v~~~Dp~~Ik~lKLeIL~~L~~e~Nv~~IL~EL~~Yv~~~D~~f~~~aI~aIg~lA~k~p~~a~~-----~L~~Ll~LL~  360 (800)
                                          ...    ..+.-|...+.+.+..++..+..+|+.++...+.....     .+..|+.+++
T Consensus       141 --------------------~~~----~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~  196 (264)
T d1xqra1         141 --------------------LRL----DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR  196 (264)
T ss_dssp             --------------------HHT----THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT
T ss_pred             --------------------HHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             --------------------872----01268899880586578899999999987445778888887646899999973