Citrus Sinensis ID: 003725
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 800 | 2.2.26 [Sep-21-2011] | |||||||
| O81028 | 799 | Pentatricopeptide repeat- | yes | no | 0.871 | 0.872 | 0.417 | 1e-145 | |
| Q9LMH5 | 883 | Putative pentatricopeptid | no | no | 0.91 | 0.824 | 0.369 | 1e-125 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.72 | 0.790 | 0.266 | 1e-65 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.71 | 0.760 | 0.268 | 3e-64 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.601 | 0.608 | 0.292 | 5e-63 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.748 | 0.614 | 0.254 | 2e-62 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.896 | 0.783 | 0.256 | 6e-61 | |
| Q9LN69 | 904 | Putative pentatricopeptid | no | no | 0.891 | 0.788 | 0.263 | 1e-59 | |
| Q9M302 | 659 | Pentatricopeptide repeat- | no | no | 0.733 | 0.890 | 0.266 | 2e-59 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.78 | 0.827 | 0.248 | 3e-59 |
| >sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 305/731 (41%), Positives = 429/731 (58%), Gaps = 34/731 (4%)
Query: 80 LDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDL 139
L+S R DP AL+F LK G NV+ YA +VRIL G KL+S+L EL+ K +
Sbjct: 63 LNSTRDDPNLALSFLRQLKEHGVSPNVNAYATLVRILTTWGLDIKLDSVLVELI-KNEER 121
Query: 140 NFEVIDLFEALSKEG-----SNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSK 194
F V+DL E + ++ S V RVS A+VKAY S MFD+A +VLFQ+ R V
Sbjct: 122 GFTVMDLIEVIGEQAEEKKRSFVLIRVSGALVKAYVSLGMFDEATDVLFQSKRLDCVVDI 181
Query: 195 FTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNE 254
CNF MN++ + G++ M++ L++++K +G N++TY IV+KALC+ EEA +L E
Sbjct: 182 KACNFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKGNLEEAAMLLIE 241
Query: 255 MNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN----GIPLNAFAYTAVIREFC 310
Y T I GLC G + L+L+ + G L A V+R FC
Sbjct: 242 NESV------FGYKTFINGLCVTGETEKAVALILELIDRKYLAGDDLRA-VLGMVVRGFC 294
Query: 311 QNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-Y 369
++ AESV++ M+++ D Y A+I YCK N+ +AL +M G+K N
Sbjct: 295 NEMKMKAAESVIIEMEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCV 354
Query: 370 VVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEM 429
+VS+IL+C C+M EA++KFKEF+ M IFLD+VCYNV DAL KLG VEEA +L EM
Sbjct: 355 IVSLILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEM 414
Query: 430 EGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSV 489
+ R IVPDV NYTT+IDGY L+GK+VDA+ L +M G PD+ YNVL GLA+ G
Sbjct: 415 KDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHE 474
Query: 490 RDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDG 549
+ L+ + MK +G KPN +T+++IIEGLC + +VKEA FF L++KC EN ++ V G
Sbjct: 475 EEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFF-SSLEQKCPENKASFVKG 533
Query: 550 YCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPS 609
YCEA ++A++ F+ L + +R KL +L IEGY KA +L M +P
Sbjct: 534 YCEAGLSKKAYKAFVRLE---YPLRKSVYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPG 590
Query: 610 KTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFK 669
++ K+IGA C ++ A +FD + GLIPDL +YT++IH +C+LN L++A ++F+
Sbjct: 591 RSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFE 650
Query: 670 DMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPD 729
DMK RGIKPDVV YT+L D Y K++ + +++ AS+ L E
Sbjct: 651 DMKQRGIKPDVVTYTVLLDRYLKLDPEHHETC--SVQGEVGKRKASEVLREFS------- 701
Query: 730 VMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPTKK 789
G+ D VCYTVLI R C NNL A +FD MID GLEP++V Y L+ K
Sbjct: 702 ---AAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKG 758
Query: 790 DVDKYLSLFAE 800
+D ++L E
Sbjct: 759 YIDMAVTLVTE 769
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800 OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 286/774 (36%), Positives = 435/774 (56%), Gaps = 46/774 (5%)
Query: 53 SHSQYIWSGSEEEDSSECNSTSEVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAI 112
SHS+ + G+ + + E N V+ L+S + DP AL+F + ++ +V YA +
Sbjct: 38 SHSEQVKEGTFDYKALELNDIG-VLRVLNSMKDDPYLALSFLKRIEGNVTLPSVQAYATV 96
Query: 113 VRILCYCGRQKKLESLLRELVQKMND-LNFEVIDLFEALSK-EGSNVFY-RVSDAMVKAY 169
+RI+C G KKL++ L ELV++ ++ F V+DL +A+ + E S V RVS A+VKAY
Sbjct: 97 IRIVCGWGLDKKLDTFLFELVRRGDEGRGFSVMDLLKAIGEMEQSLVLLIRVSTALVKAY 156
Query: 170 CSERMFDQALNVLFQTDRP-GFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLN 228
+ MFD+A+++ F+ G NF +++++ G DMV+ + E++ +G +
Sbjct: 157 ANLDMFDEAIDIFFRAYYSLGRAPDIKALNFLISRMIASGRSDMVVGFFWEIERLGLDAD 216
Query: 229 QFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLL 288
TY +V++AL + EE +L+ + + Y I+GLC N D+ Y LL
Sbjct: 217 AHTYVLVVQALWRNDDKEELEKLLSRLLISETRNPCVFYLNFIEGLCLNQMTDIAYFLLQ 276
Query: 289 KWSENGIPLN----AFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGY 344
+ I ++ AY V+R C R+ +AESV+L M++ + PD YVYSA+I G+
Sbjct: 277 PLRDANILVDKSDLGIAYRKVVRGLCYEMRIEDAESVVLDMEKHGIDPDVYVYSAIIEGH 336
Query: 345 CKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQ 403
K NI KA+ + +M + N +VS IL+C CQMG SEA FKEF+ I LD+
Sbjct: 337 RKNMNIPKAVDVFNKMLKKRKRINCVIVSSILQCYCQMGNFSEAYDLFKEFRETNISLDR 396
Query: 404 VCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKK 463
VCYNV DAL KLG+VEEA++LF EM G+ I PDV NYTT+I G L+GK DA L +
Sbjct: 397 VCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIE 456
Query: 464 MREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGR 523
M G PDI YNVLA GLA G ++A + LK M+ +GVKP +THNM+IEGL +G
Sbjct: 457 MDGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGE 516
Query: 524 VKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLT 583
+ +A AF+ + L+ K EN ++MV G+C A L+ AF+ F+ L F + L T
Sbjct: 517 LDKAEAFY-ESLEHKSRENDASMVKGFCAAGCLDHAFERFIRLE---FPLPKSVYFTLFT 572
Query: 584 NLLIE-GYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLI 642
+L E Y +KA LLD M KL +P K+ Y K+IGA C ++ A + F+ L ++
Sbjct: 573 SLCAEKDYISKAQDLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKKIV 632
Query: 643 PDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSS- 701
PDL +YT++I+ +C+LN ++A +F+DMK R +KPDVV Y++L ++ +++ + +
Sbjct: 633 PDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYSVLLNSDPELDMKREMEAF 692
Query: 702 ---P----HTLRSNE-----EVVDASDFLEEMKEMEISPDV------------------M 731
P +T+ N ++ ++MK EI PDV M
Sbjct: 693 DVIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLKNKPERNLSREM 752
Query: 732 LGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGC 785
++PD YTVLI C +L +A +FD+MI+ G++P+ Y AL+ C
Sbjct: 753 KAFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACC 806
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 165/620 (26%), Positives = 292/620 (47%), Gaps = 44/620 (7%)
Query: 102 FRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEA-LSKEGSNVFYR 160
F+H + +A++ IL GR +S L ++++ E+++ ++ S GSN
Sbjct: 109 FKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSN--DS 166
Query: 161 VSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEM 220
V D +++ Y R +A GF S CN + L++ G V++ +Y+E+
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226
Query: 221 KSVGFSLNQFTYDIVIKALCKLARFE---------------------------------- 246
G +N +T +I++ ALCK + E
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLM 286
Query: 247 -EAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAV 305
EAF+++N M G + + Y+T+I GLC++G+ + ++ + +G+ ++ Y ++
Sbjct: 287 EEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL 346
Query: 306 IREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIG- 364
+ E C+ +VE E V M+ V PD +S+++S + + GN+ KAL + G
Sbjct: 347 LMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGL 406
Query: 365 IKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVK 424
I N + +++++ C+ G S A+ E G +D V YN I+ LCK + EA K
Sbjct: 407 IPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADK 466
Query: 425 LFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLA 484
LFNEM R + PD T +IDG+ G L +A+ LF+KM+E + D+ YN L G
Sbjct: 467 LFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFG 526
Query: 485 QYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENY- 543
+ G + A + M + + P I++++++ LC+ G + EA +D+ + +
Sbjct: 527 KVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVM 586
Query: 544 --SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM 601
++M+ GYC + + + F + GF+ S L+ + E +KAF L+ M
Sbjct: 587 ICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKM 646
Query: 602 LKLDAK--PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659
+ P TY+ ++ C ++K A V + G+ PD +YT +I+GF +
Sbjct: 647 EEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQD 706
Query: 660 CLREACNIFKDMKLRGIKPD 679
L EA I +M RG PD
Sbjct: 707 NLTEAFRIHDEMLQRGFSPD 726
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 161/599 (26%), Positives = 295/599 (49%), Gaps = 31/599 (5%)
Query: 161 VSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGE-VDMVLVLYEE 219
V D +VK+Y + D+AL+++ GF+ + N ++ ++ + +++E
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 220 MKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGR 279
M S N FTY+I+I+ C + A + ++M G + Y+T+I G C+ +
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 280 LDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSA 339
+D G+ LL + G+ N +Y VI C+ R+ E VL M + + D+ Y+
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 315
Query: 340 LISGYCKCGNIIKALSLHGEMTSIGIKTNYVV-SVILKCLCQMGKTSEAIKKFKEFKSMG 398
LI GYCK GN +AL +H EM G+ + + + ++ +C+ G + A++ + + G
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 399 IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAI 458
+ ++ Y ++D + G + EA ++ EM P V Y +I+G+ + GK+ DAI
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 459 GLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGL 518
+ + M+E G PD+ +Y+ + G + V +AL + M ++G+KP+ IT++ +I+G
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 519 CTSGRVKEARAFFDDDLKEKCLEN---YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRS 575
C R KEA +++ L+ + Y+A+++ YC LE+A Q + ++G L
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 576 ESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYD---------------KVIGAL 620
+ L+ L + +A +LL + ++ PS TY +I
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGF 615
Query: 621 CLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV 680
C+ G + A QVF+ + PD +Y ++IHG C+ +R+A ++K+M +K
Sbjct: 616 CMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM----VKSGF 671
Query: 681 VLYTILCDAYSK-INKRG-----SSSSPHTLRSNE-EVVDASDFLEEMKEMEISPDVML 732
+L+T+ A K ++K G +S H LRS E + + L E+ E + DV+L
Sbjct: 672 LLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVL 730
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/489 (29%), Positives = 255/489 (52%), Gaps = 8/489 (1%)
Query: 206 KCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFD-VLNEMNKAGVTLHG 264
+ G +D+ + GF ++ + ++K LC R +A D VL M + G +
Sbjct: 99 RAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNV 158
Query: 265 HNYSTIIQGLCENGRLDVGYDLLLKWSEN---GIPLNAFAYTAVIREFCQNSRLVEAESV 321
+Y+ +++GLC+ R +LL +++ G P + +YT VI F + +A S
Sbjct: 159 FSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 218
Query: 322 LLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVV-SVILKCLCQ 380
M + PD Y+++I+ CK + KA+ + M G+ + + + IL C
Sbjct: 219 YHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 278
Query: 381 MGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVAN 440
G+ EAI K+ +S G+ D V Y+++MD LCK G EA K+F+ M R + P++
Sbjct: 279 SGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITT 338
Query: 441 YTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMK 500
Y T++ GY +G LV+ GL M G PD +++L A+ G V A+ M+
Sbjct: 339 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMR 398
Query: 501 KQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN---YSAMVDGYCEANHLE 557
+QG+ PN +T+ +I LC SGRV++A +F+ + E Y++++ G C N E
Sbjct: 399 QQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Query: 558 EAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVI 617
A + + + RG + + ++ + EG ++ KL + M+++ KP+ TY+ +I
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Query: 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIK 677
CLAGK+ A ++ + GL P+ ++Y+ LI+G+CK++ + +A +FK+M+ G+
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVS 578
Query: 678 PDVVLYTIL 686
PD++ Y I+
Sbjct: 579 PDIITYNII 587
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 174/684 (25%), Positives = 313/684 (45%), Gaps = 85/684 (12%)
Query: 93 FFELLKA---RGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEV---IDL 146
F+++ K R +V TY ++ C G + + +L + ++ V + L
Sbjct: 205 FWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKL 264
Query: 147 FEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLK 206
E++ +G D ++ C + + A ++L + D G T + ++ LLK
Sbjct: 265 KESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLK 324
Query: 207 CGEVDMVLVLYEEMKSVGFSLNQFTYDI-------------------------------- 234
D L EM S G ++ + YD
Sbjct: 325 GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA 384
Query: 235 ---VIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWS 291
+I+ C+ + +++L EM K + + + Y T+++G+C +G LD Y+++ +
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI 444
Query: 292 ENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNII 351
+G N YT +I+ F QNSR +A VL MK+ + PD + Y++LI G K +
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMD 504
Query: 352 KALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIM 410
+A S EM G+K N + + + + + A K KE + G+ ++V ++
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564
Query: 411 DALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHK 470
+ CK G+V EA + M + I+ D YT +++G K+ DA +F++MR G
Sbjct: 565 NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIA 624
Query: 471 PDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAF 530
PD+ +Y VL G ++ G+++ A M ++G+ PNVI +NM++ G C SG +++A+
Sbjct: 625 PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL 684
Query: 531 FDDDLKEKCLE----NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRS-------ESCC 579
D++ K L Y ++DGYC++ L EAF+ F + +G + S + CC
Sbjct: 685 L-DEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743
Query: 580 KL---LTNLLIEGYNNKA---------------FKLLDTMLKLD-------------AKP 608
+L + I G N K FK T LK + KP
Sbjct: 744 RLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803
Query: 609 SKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIF 668
+ TY+ +I LC G ++ A ++F + L+P +I+YT L++G+ K+ E +F
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 669 KDMKLRGIKPDVVLYTILCDAYSK 692
+ GI+PD ++Y+++ +A+ K
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLK 887
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 193/751 (25%), Positives = 336/751 (44%), Gaps = 34/751 (4%)
Query: 59 WSGSEEEDSSECNSTSEVVNKLDSFRKDPGAALTFFELLKARG-FRHNVHTYAAIVRILC 117
W S S + V+ L S DP AL F + ++H+V++YA+++ +L
Sbjct: 75 WHKSPSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLI 134
Query: 118 ---YCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSK-EGSNVFYRV----SDAMVKAY 169
Y G K+ L+ + + D + V+DL ++K E + Y++ + ++ +
Sbjct: 135 NNGYVGVVFKIRLLMIKSCDSVGDALY-VLDLCRKMNKDERFELKYKLIIGCYNTLLNSL 193
Query: 170 CSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQ 229
+ D+ V + + +T N +N K G V+ ++ G +
Sbjct: 194 ARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDF 253
Query: 230 FTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLK 289
FTY +I C+ + AF V NEM G + Y+ +I GLC R+D DL +K
Sbjct: 254 FTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVK 313
Query: 290 WSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN 349
++ YT +I+ C + R EA +++ M++ + P+ + Y+ LI C
Sbjct: 314 MKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCK 373
Query: 350 IIKALSLHGEMTSIGIKTNYVV-SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNV 408
KA L G+M G+ N + + ++ C+ G +A+ + +S + + YN
Sbjct: 374 FEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNE 433
Query: 409 IMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMG 468
++ CK V +A+ + N+M R+++PDV Y ++IDG G A L M + G
Sbjct: 434 LIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 469 HKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEAR 528
PD Y + L + V +A D ++++GV PNV+ + +I+G C +G+V EA
Sbjct: 493 LVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAH 552
Query: 529 AFFDDDLKEKCLEN---YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNL 585
+ L + CL N ++A++ G C L+EA + + G + L+ L
Sbjct: 553 LMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRL 612
Query: 586 LIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDL 645
L +G + A+ ML KP TY I C G++ A + + +G+ PDL
Sbjct: 613 LKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDL 672
Query: 646 ISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPD-----VVLYTILCDAYSKINKRGSSS 700
+Y+ LI G+ L A ++ K M+ G +P ++ +L Y K ++GS
Sbjct: 673 FTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGK--QKGSEP 730
Query: 701 SPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDAL 760
+ + E + LE+M E ++P+ Y LI +C NL A
Sbjct: 731 ELCAMSNMMEFDTVVELLEKMVEHSVTPNAK----------SYEKLILGICEVGNLRVAE 780
Query: 761 IVFDEMI-DRGLEPNIVIYKALL-CGCPTKK 789
VFD M + G+ P+ +++ ALL C C KK
Sbjct: 781 KVFDHMQRNEGISPSELVFNALLSCCCKLKK 811
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 197/748 (26%), Positives = 353/748 (47%), Gaps = 35/748 (4%)
Query: 73 TSEVVNK-LDSFRKDPGAALTFFELL-KARGFRHNVHTYAAIVRILCYCGRQKKLESLLR 130
+ E++N L R +P A L F L K + FR + Y +V IL ++ +S L
Sbjct: 69 SDELLNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYLC 128
Query: 131 ELVQKMNDLNF----EVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTD 186
ELV +N F E++ +F+ S + V D ++K Y + + AL+V
Sbjct: 129 ELVA-LNHSGFVVWGELVRVFKEFSFSPT-----VFDMILKVYAEKGLVKNALHVFDNMG 182
Query: 187 RPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFE 246
G + S +CN ++ L++ GE + L +Y++M S S + FT IV+ A C+ +
Sbjct: 183 NYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVD 242
Query: 247 EAFDVLNEMNKA-GVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAV 305
+A E + G+ L+ Y+++I G G ++ +L SE G+ N YT++
Sbjct: 243 KAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSL 302
Query: 306 IREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGI 365
I+ +C+ + EAE V +K+ ++ D+++Y L+ GYC+ G I A+ +H M IG+
Sbjct: 303 IKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGV 362
Query: 366 KTNYVV-SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVK 424
+TN + + ++ C+ G+ EA + F + D YN ++D C+ G V+EA+K
Sbjct: 363 RTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALK 422
Query: 425 LFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLA 484
L ++M +++VP V Y ++ GY G D + L+K M + G D + + L L
Sbjct: 423 LCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALF 482
Query: 485 QYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC---LE 541
+ G +A+ + + +G+ + IT N++I GLC +V EA+ D+ +C ++
Sbjct: 483 KLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQ 542
Query: 542 NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM 601
Y A+ GY + +L+EAF + ++G E L++ + NK L+ +
Sbjct: 543 TYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIEL 602
Query: 602 LKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCL 661
P+ TY +I C G I A+ + G+ ++ + + + +L+ +
Sbjct: 603 RARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKI 662
Query: 662 REACNIFK-----DMKLRG---IKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVD 713
EAC + + D+ L G +K + C KI + +S+P L +V
Sbjct: 663 DEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVY 722
Query: 714 --------ASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDE 765
+ LE+ +++ D++ PD YT+LI ++ A + DE
Sbjct: 723 NVAIAGLCKAGKLEDARKL--FSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDE 780
Query: 766 MIDRGLEPNIVIYKALLCGCPTKKDVDK 793
M +G+ PNIV Y AL+ G +VD+
Sbjct: 781 MALKGIIPNIVTYNALIKGLCKLGNVDR 808
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 168/630 (26%), Positives = 301/630 (47%), Gaps = 43/630 (6%)
Query: 75 EVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLREL-V 133
+VV +L P A F + + F+H T+ ++R L G+ ++ LL+++ +
Sbjct: 45 DVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKL 104
Query: 134 QKMN---DLNFEVIDLFE--ALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRP 188
Q + DL VI ++ L++ +FYR+ + S ++++ L+ L +R
Sbjct: 105 QGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDP--SVKIYNHVLDTLLGENR- 161
Query: 189 GFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEA 248
+ M+ ++Y +MK GF N FTY++++KALCK + + A
Sbjct: 162 ---------------------IQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGA 200
Query: 249 FDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIRE 308
+L EM+ G +Y+T+I +CE G + G +L +E P+ + Y A+I
Sbjct: 201 KKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGREL----AERFEPVVS-VYNALING 255
Query: 309 FCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN 368
C+ A ++ M + ++P+ YS LI+ C G I A S +M G N
Sbjct: 256 LCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPN 315
Query: 369 -YVVSVILKCLCQMGKTSEAIKKFKE-FKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426
Y +S ++K G T +A+ + + + G+ + V YN ++ C G + +AV +F
Sbjct: 316 IYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVF 375
Query: 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQY 486
+ ME P++ Y ++I+G+ RG L A+ ++ KM G P++ Y + L ++
Sbjct: 376 SHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRH 435
Query: 487 GSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDD-DLKEKCLEN--- 542
++A ++ M K+ P+V T N I+GLC +GR+ A F + + +C N
Sbjct: 436 SKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVT 495
Query: 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTML 602
Y+ ++DG +AN +EEA+ + RG S + LL G A +L+ M+
Sbjct: 496 YNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMM 555
Query: 603 KLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLT--RHGLIPDLISYTMLIHGFCKLNC 660
P + T + +I A C GK + A Q+ D ++ R PD+ISYT +I G C+ NC
Sbjct: 556 VDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNC 615
Query: 661 LREACNIFKDMKLRGIKPDVVLYTILCDAY 690
+ + + M GI P + +++L + +
Sbjct: 616 REDGVILLERMISAGIVPSIATWSVLINCF 645
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 177/711 (24%), Positives = 319/711 (44%), Gaps = 87/711 (12%)
Query: 73 TSEVVNKLDSFRKDP--GAALTFFELL-KARGFRHNVHTYAAIVRILCYCGRQKKLESLL 129
+S V LDS R P AAL F L K F Y IL GR + +
Sbjct: 47 SSTDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYE---EILLRLGRSGSFDDM- 102
Query: 130 RELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVL-FQTDRP 188
+++++ M E+ G++ F ++++Y + D+ L+V+ + D
Sbjct: 103 KKILEDMKSSRCEM----------GTSTFL----ILIESYAQFELQDEILSVVDWMIDEF 148
Query: 189 GFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEA 248
G N +N L+ + +V + + +M G + T++++IKALC+ + A
Sbjct: 149 GLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPA 208
Query: 249 FDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIRE 308
+L +M G+ ++T++QG E G LD + + E G + + ++
Sbjct: 209 ILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHG 268
Query: 309 FCQNSRLVEAESVLLRM-KQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKT 367
FC+ R+ +A + + M Q PD+Y ++ L++G CK G++ A+ + M G
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 368 N-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426
+ Y + ++ LC++G+ EA++ + + + V YN ++ LCK +VEEA +L
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQY 486
+ + I+PDV + ++I G L A+ LF++MR G +PD YN+L L
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448
Query: 487 GSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN---Y 543
G + +AL+ LK M+ G +VIT+N +I+G C + + +EA FD+ N Y
Sbjct: 449 GKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTY 508
Query: 544 SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLK 603
+ ++DG C++ +E+A Q L+D M+
Sbjct: 509 NTLIDGLCKSRRVEDAAQ-----------------------------------LMDQMIM 533
Query: 604 LDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663
KP K TY+ ++ C G IK A + +T +G PD+++Y LI G CK +
Sbjct: 534 EGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEV 593
Query: 664 ACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKE 723
A + + ++++GI + AY+ + + L + +A + EM E
Sbjct: 594 ASKLLRSIQMKGI-------NLTPHAYNPVIQ--------GLFRKRKTTEAINLFREMLE 638
Query: 724 MEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLV-DALIVFDEMIDRGLEP 773
+P PD V Y ++ LC + +A+ E++++G P
Sbjct: 639 QNEAP---------PDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVP 680
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 800 | ||||||
| 255546727 | 809 | pentatricopeptide repeat-containing prot | 0.968 | 0.957 | 0.481 | 0.0 | |
| 225464790 | 817 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.953 | 0.473 | 0.0 | |
| 255569835 | 913 | pentatricopeptide repeat-containing prot | 0.892 | 0.782 | 0.448 | 1e-177 | |
| 356513749 | 819 | PREDICTED: pentatricopeptide repeat-cont | 0.892 | 0.871 | 0.433 | 1e-171 | |
| 296087527 | 727 | unnamed protein product [Vitis vinifera] | 0.837 | 0.921 | 0.428 | 1e-166 | |
| 224076898 | 800 | predicted protein [Populus trichocarpa] | 0.893 | 0.893 | 0.422 | 1e-163 | |
| 449458001 | 920 | PREDICTED: pentatricopeptide repeat-cont | 0.901 | 0.783 | 0.408 | 1e-154 | |
| 449505420 | 795 | PREDICTED: pentatricopeptide repeat-cont | 0.883 | 0.889 | 0.412 | 1e-154 | |
| 357463937 | 946 | Pentatricopeptide repeat-containing prot | 0.932 | 0.788 | 0.395 | 1e-154 | |
| 357502007 | 738 | Pentatricopeptide repeat-containing prot | 0.82 | 0.888 | 0.397 | 1e-144 |
| >gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/805 (48%), Positives = 546/805 (67%), Gaps = 30/805 (3%)
Query: 1 MWVSAIKLNSLRHFIKPVQCIRCRSFSSLPQLPVSSHFQYISSDSEEGEDSSSHSQYIWS 60
MWVS+IKL S R +IK V IR + S+L +HF Y EE + ++H Q +
Sbjct: 1 MWVSSIKLFSCRKYIKHVNFIRLYTVSAL------AHFNY---PIEEEQTINTHYQNPVT 51
Query: 61 GSEEEDSSECNSTSEVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCG 120
E + T++VV L++ R +P A ++F LK G+ H+ +TYAAIVRILC+ G
Sbjct: 52 NHLFEIN-----TAKVVITLNNLRNEPSLAFSYFNQLKESGYSHDPYTYAAIVRILCFWG 106
Query: 121 RQKKLESLLRELVQKMNDLNFEVIDLFEAL----SKEGSNVFYRVSDAMVKAYCSERMFD 176
+KL+S+L E+++K +L+F +++LFEAL + E +V +VSDA++K + MFD
Sbjct: 107 WSRKLDSILMEIIKKDGNLDFGIVNLFEALGDGIANESFSVLVQVSDALIKVCVASGMFD 166
Query: 177 QALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVI 236
QA +VL QT GF +CNF MN+L++ +VDM + +Y ++K+ G + N +TY I I
Sbjct: 167 QAFDVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAI 226
Query: 237 KALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIP 296
K C+ EA DV +M ++GVT + +Y+T I+GLC +GR D+G+ +L IP
Sbjct: 227 KGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIP 286
Query: 297 LNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSL 356
++ FAYT VIR FC +L EAES+L M++ PD YVY ALISGYC GN++KAL+L
Sbjct: 287 MDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALAL 346
Query: 357 HGEMTSIGIKTNYVV-SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCK 415
H EM S G+KTN V+ S IL+ L QMG SE +FKEFK MGIF D+ CYNV+MDALCK
Sbjct: 347 HDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCK 406
Query: 416 LGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKA 475
LG+VEEAV+L EM+G+++VPD+ NYTTVI GY L+GK+VDA+ ++++M+++GHKPDI
Sbjct: 407 LGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVT 466
Query: 476 YNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDL 535
YNVLA G ++ G ++AL L YM+ QGVKP+ +THNMIIEGLC G+V +A+AFF D+L
Sbjct: 467 YNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFF-DNL 525
Query: 536 KEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAF 595
+EKCLENYSAMV+GYCEANH+ +AF + LS++G +++ S KLL NL EG + KA
Sbjct: 526 EEKCLENYSAMVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKAL 585
Query: 596 KLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGF 655
LL+TM+ L+ P+ Y KVIGAL AG+++ A VF+ L GL PD+I+YT++I+G+
Sbjct: 586 CLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGY 645
Query: 656 CKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDAS 715
C++N ++EA ++ DMK RGI+PDV+ YT+L + SKI+ R SSSS ++S E ++D S
Sbjct: 646 CRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPS 705
Query: 716 DFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNI 775
EMK+M+I PDV +CYTVLI + C TNN+ DA+ +F+EMIDRGL P+
Sbjct: 706 ALWSEMKDMDIKPDV----------ICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDT 755
Query: 776 VIYKALLCGCPTKKDVDKYLSLFAE 800
V Y ALL G ++ K + LF E
Sbjct: 756 VTYTALLSGYCNVGNIKKAVVLFDE 780
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/809 (47%), Positives = 531/809 (65%), Gaps = 30/809 (3%)
Query: 1 MWVSAIKLNSLRHFIKPVQCIRCRSFSSLPQLPVSSHFQYISSDSEEGEDSSSHSQYIWS 60
MWVS+ + S R FI VQ R S L L ++ + + + Y +S
Sbjct: 1 MWVSSTRWVSCRKFITHVQLTRFNSVWGLAHLSPAAQYPI----------AEEQAVYTYS 50
Query: 61 GSEEEDSSECNSTSEVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCG 120
D +TS VV + + +P A +FF LK GF+HNV TYAA++R+LC
Sbjct: 51 KDSVGDRFIDLNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWR 110
Query: 121 RQKKLESLLRELV-QKMNDLNFEVIDLFEALSKEG-------SNVFYRVSDAMVKAYCSE 172
++KL+SLL E+V K + L F++ LF+ L + G S+V V D +VKAY
Sbjct: 111 LERKLQSLLSEIVGSKESVLGFDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRV 170
Query: 173 RMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTY 232
MFD+A++ LFQT R GFV +CNF MN+L++ G++DM + +Y +K +G + N +TY
Sbjct: 171 GMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTY 230
Query: 233 DIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSE 292
I IKALC+ FEEA DV EM +AGV + ST I+GLC + R D+GY+ L
Sbjct: 231 GIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRA 290
Query: 293 NGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIK 352
P++ FAYTAVIR FC +L EAE V + M + PD Y+Y ALI YCK GN+++
Sbjct: 291 ANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQ 350
Query: 353 ALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMD 411
A++LH +M S GIKTN +VS IL+CLC+MG SE + +FKEF+ GIFLD+V YN+++D
Sbjct: 351 AVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVD 410
Query: 412 ALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP 471
ALCKLG+VEEAV+L NEM+GR++ DV +YTT+I GY L+GKLVDA +F++M+E G +P
Sbjct: 411 ALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEP 470
Query: 472 DIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFF 531
DI YN+L G ++ G ++AL+ L + QG+KPN THN IIEGLC +G+VKEA AF
Sbjct: 471 DIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFL 530
Query: 532 DDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYN 591
+ L++KCLENYSAMVDGYC+AN +A++ F LS++G L++ +SC KLL++L +EG
Sbjct: 531 NT-LEDKCLENYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEY 589
Query: 592 NKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTML 651
+KA LL+ ML LD +P++ Y K+IGA C G +K A VFD L G+ PD+I+YTM+
Sbjct: 590 DKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMM 649
Query: 652 IHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEV 711
I+G+C++NCLREA +IF DMK RGIKPDV+ YT++ D +SK+N + + S + S EE
Sbjct: 650 INGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEK 709
Query: 712 VDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGL 771
+DAS F EMKEM G++PD VCYTVLI C TNNL DA+ ++DEMI RGL
Sbjct: 710 MDASPFWSEMKEM----------GIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGL 759
Query: 772 EPNIVIYKALLCGCPTKKDVDKYLSLFAE 800
+P+IV Y ALL C ++ D+D+ ++L E
Sbjct: 760 QPDIVTYTALLSSCCSRGDMDRAITLVNE 788
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 332/741 (44%), Positives = 475/741 (64%), Gaps = 27/741 (3%)
Query: 75 EVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQ 134
+VV+ L + + P +AL+FF LK GF+H++ TYAAI+RILCY G K+L S+ +++
Sbjct: 68 KVVDILYNLKNQPISALSFFNQLKDSGFKHDISTYAAIIRILCYWGLHKQLRSIFLDIIY 127
Query: 135 ---KMNDLNFEVIDLFEALS--------KEGSNVFYRVSDAMVKAYCSERMFDQALNVLF 183
ND FE+ + LS K+ S +V DA+VKAY S MFD A++VLF
Sbjct: 128 VSCNDNDTPFEISHFLDTLSDGFVDVDSKKQSLFMSKVYDALVKAYVSVGMFDDAIDVLF 187
Query: 184 QTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLA 243
Q R FV F CNF MN L+K ++DM L +Y+++K +G S N +TY IVIKALC
Sbjct: 188 QMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCING 247
Query: 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYT 303
EEA V+ EM ++G+T G Y+ I+GLC N D+GY +L W IPL+ +AYT
Sbjct: 248 SLEEAMYVIKEMEESGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYT 307
Query: 304 AVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI 363
+R FC + +AESVL M++ + PD + Y+ALI +CK GN++KA + EM S
Sbjct: 308 VAVRGFCNELKFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSK 367
Query: 364 GIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEA 422
G+K N +V IL CLC++G SE + +F +FKS+G+FLD V YN ++DALCKLG++EEA
Sbjct: 368 GVKVNCVIVGSILHCLCELGMHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEA 427
Query: 423 VKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARG 482
+ L +EM+ +QI DV +YTT+I+GY +G +VDA +F++MRE G + D+ Y+VL G
Sbjct: 428 ITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLVSG 487
Query: 483 LAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN 542
+ G +AL+ L YM+ Q +KPN IT+N+++E LC G+VKEA A F + +++K L+N
Sbjct: 488 FCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKVKEAEAVF-NSIEDKSLDN 546
Query: 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTML 602
Y AM++GYC+ANH A + F LS +G + RS C LL NL EG N+ LL+TML
Sbjct: 547 YFAMINGYCKANHTAGAAKLFFRLSVKGHVKRS-CCYNLLKNLCEEGDNDGILMLLETML 605
Query: 603 KLDAKPSKTTYDKVIGALCLAG---KIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659
L+ +PSK Y K+ +LC AG ++ A VFD L + G PDLI+YT++I +C++N
Sbjct: 606 NLNVEPSKFIYGKLFTSLCRAGGAAGMRKAQSVFDMLLKRGWTPDLIAYTIMITSYCRMN 665
Query: 660 CLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLE 719
CL+EA ++F DMK RGIKPD+V +T+L D + K + + S+ + NE++ DA
Sbjct: 666 CLKEAVDLFHDMKQRGIKPDLVTFTVLLDGHHKAHIKKVYSAANAKGGNEDIFDALAIWT 725
Query: 720 EMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYK 779
EMK+ EI PDV+ YTVLI C ++L DA+ VFDEMI+RGLEP+I+ Y
Sbjct: 726 EMKDTEIKPDVIF----------YTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYT 775
Query: 780 ALLCGCPTKKDVDKYLSLFAE 800
ALL GC + DVD+ ++L +
Sbjct: 776 ALLSGCCQRGDVDRAVNLLDQ 796
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513749|ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 320/739 (43%), Positives = 468/739 (63%), Gaps = 25/739 (3%)
Query: 72 STSEVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRE 131
ST +V+ L +P AL+FF L+ GF H + TYAAI++IL + Q++L++L
Sbjct: 66 STFDVLQTLHHLHNNPSHALSFFTHLRHTGFSHTISTYAAIIKILSFWNLQRQLDTLFLH 125
Query: 132 LVQKMNDLNFEVI-----DLFEALSKEGSNVFY--RVSDAMVKAYCSERMFDQALNVLFQ 184
L+ + + + LF+ + N ++ R + VK S MFD+A++ LFQ
Sbjct: 126 LINRDHPPLPFPLLNLFETLFQDFNTSHKNNYFLLRAFNGFVKTCVSLNMFDKAIDFLFQ 185
Query: 185 TDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLAR 244
T R G + TCNF N+L++ GEVD L +YE++K GF N +TY IVIKALCK
Sbjct: 186 TRRRGILPDVLTCNFLFNRLVEHGEVDKALAVYEQLKRFGFIPNCYTYAIVIKALCKKGD 245
Query: 245 FEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTA 304
++ V EM + GV H + ++ I+GLC N R D+GY++L + + PL +AYTA
Sbjct: 246 LKQPLCVFEEMERVGVIPHSYCFAAYIEGLCNNHRSDLGYEVLQAFRKGNAPLEVYAYTA 305
Query: 305 VIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIG 364
V+R FC +L EA+ V M++ V PD YVYS+LI GYCK N+++AL+LH EM S G
Sbjct: 306 VVRGFCNEMKLDEAQGVFDDMERQGVVPDVYVYSSLIHGYCKSHNLLRALALHDEMISRG 365
Query: 365 IKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAV 423
+KTN VVS IL CL +MG T E + +FKE K G+FLD V YN++ DALC LG+VE+AV
Sbjct: 366 VKTNCVVVSCILHCLGEMGMTLEVVDQFKELKESGMFLDGVAYNIVFDALCMLGKVEDAV 425
Query: 424 KLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGL 483
++ EM+ +++ DV +YTT+I+GY L+G LV A +FK+M+E G KPDI YNVLA GL
Sbjct: 426 EMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNVLAAGL 485
Query: 484 AQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENY 543
++ G R+ + L +M+ QG+KPN TH MIIEGLC+ G+V EA +F + L++K +E Y
Sbjct: 486 SRNGHARETVKLLDFMESQGMKPNSTTHKMIIEGLCSGGKVLEAEVYF-NSLEDKNIEIY 544
Query: 544 SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLK 603
SAMV+GYCE + ++++++ F+ L +G + + SC KLL+ L + G KA KLLD ML
Sbjct: 545 SAMVNGYCETDLVKKSYEVFLKLLNQGDMAKKASCFKLLSKLCMTGDIEKAVKLLDRMLL 604
Query: 604 LDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663
+ +PSK Y K++ ALC AG +K A +FD G PD+++YT++I+ +C++NCL+E
Sbjct: 605 SNVEPSKIMYSKILAALCQAGDMKNARTLFDVFVHRGFTPDVVTYTIMINSYCRMNCLQE 664
Query: 664 ACNIFKDMKLRGIKPDVVLYTILCDAYSK--INKRGSSSSPHTLRSNEEVVDASDFLEEM 721
A ++F+DMK RGIKPDV+ +T+L D K + KR SS H R + S L +M
Sbjct: 665 AHDLFQDMKRRGIKPDVITFTVLLDGSLKEYLGKRFSS---HGKRKTTSLY-VSTILRDM 720
Query: 722 KEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKAL 781
++M+I+PDV VCYTVL+ T+N A+ +FD+MI+ GLEP+ + Y AL
Sbjct: 721 EQMKINPDV----------VCYTVLMDGHMKTDNFQQAVSLFDKMIESGLEPDTITYTAL 770
Query: 782 LCGCPTKKDVDKYLSLFAE 800
+ G + V+K ++L E
Sbjct: 771 VSGLCNRGHVEKAVTLLNE 789
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 325/759 (42%), Positives = 450/759 (59%), Gaps = 89/759 (11%)
Query: 1 MWVSAIKLNSLRHFIKPVQCIRCRSFSSLPQLPVSSHFQYISSDSEEGEDSSSHSQYIWS 60
MWVS+ + S R FI VQ R S L L ++ + + + Y +S
Sbjct: 1 MWVSSTRWVSCRKFITHVQLTRFNSVWGLAHLSPAAQYPI----------AEEQAVYTYS 50
Query: 61 GSEEEDSSECNSTSEVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCG 120
D +TS VV + + +P A +FF LK GF+HNV TYAA++R+LC
Sbjct: 51 KDSVGDRFIDLNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWR 110
Query: 121 RQKKLESLLRELV-QKMNDLNFEVIDLFEALSKEG-------SNVFYRVSDAMVKAYCSE 172
++KL+SLL E+V K + L F++ LF+ L + G S+V V D +VKAY
Sbjct: 111 LERKLQSLLSEIVGSKESVLGFDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRV 170
Query: 173 RMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTY 232
MFD+A++ LFQT R GFV +CNF MN+L++ G++DM + +Y +K +G + N +TY
Sbjct: 171 GMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTY 230
Query: 233 DIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSE 292
I IKALC+ FEEA DV EM +AGV + ST I+GLC + R D+GY+ L
Sbjct: 231 GIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRA 290
Query: 293 NGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIK 352
P++ FAYTAVIR FC +L EAE V + M + PD Y+Y ALI YCK GN+++
Sbjct: 291 ANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQ 350
Query: 353 ALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDA 412
A++LH +M S GIKTN V +FKEF+ GIFLD+V YN+++DA
Sbjct: 351 AVALHNDMVSNGIKTNLV------------------DQFKEFRDSGIFLDEVLYNIVVDA 392
Query: 413 LCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPD 472
LCKLG+VEEAV+L NEM+GR++ DV +YTT+I GY L+GKLVDA +F++M+E G +PD
Sbjct: 393 LCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPD 452
Query: 473 IKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFD 532
I YN+L G ++ G ++AL+ L + QG+KPN THN IIEGLC +G+VKEA AF
Sbjct: 453 IVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFL- 511
Query: 533 DDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNN 592
+ L++KCLENYSAMVDGYC+AN +A++ F LS++G L
Sbjct: 512 NTLEDKCLENYSAMVDGYCKANFTRKAYELFSRLSKQGIL-------------------- 551
Query: 593 KAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLI 652
ML LD +P++ Y K+IGA C G +K A VFD L G+ PD+I+YTM+I
Sbjct: 552 -------RMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMI 604
Query: 653 HGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVV 712
+G+C++NCLREA +IF DMK RGIKPDV+ YT++ D +SK N +
Sbjct: 605 NGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNN---------------LQ 649
Query: 713 DASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLC 751
DA + +E M+ +GL+PD V YT L+ C
Sbjct: 650 DAINLYDE----------MIARGLQPDIVTYTALLPGKC 678
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224076898|ref|XP_002305039.1| predicted protein [Populus trichocarpa] gi|222848003|gb|EEE85550.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 318/753 (42%), Positives = 459/753 (60%), Gaps = 38/753 (5%)
Query: 62 SEEEDSSECNSTSEVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGR 121
++++D + + ++V+ L + + P A + F LK ++ YAAI+RILC+ G
Sbjct: 55 AKDDDQQQPLQSHKIVDTLYNLKNQPHLAFSIFSHLK----NPDIPAYAAIIRILCHWGL 110
Query: 122 QKKLESLLRELVQKMNDL-NFEVIDLFEALS---------------KEGSNVFYRVSDAM 165
K L S+ L Q ND +F++ L + LS K S+ +V DA+
Sbjct: 111 HKMLHSIFLHLHQNNNDFTSFDISHLLDTLSLPHHIDIDLEKEDTVKHRSSFLIQVYDAL 170
Query: 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGF 225
VK+Y + M D+A+N LFQ R GF+ FT N+ MN+L+ G+VD L +Y+++KS+G
Sbjct: 171 VKSYVTAGMLDEAINALFQIKRRGFLPHIFTFNYLMNKLIANGKVDAALAIYKQLKSLGL 230
Query: 226 SLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYD 285
+ N +TY I+IKA C+ EA +V EM GV + + Y+T I+GLC N R D GY
Sbjct: 231 NPNDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVIPNAYAYTTYIEGLCANQRSDFGYQ 290
Query: 286 LLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYC 345
+L W E IP++ +AY AVIR FC ++ AE VL M++ + D YS LI GYC
Sbjct: 291 VLQAWKEGNIPIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARCYSELIRGYC 350
Query: 346 KCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQV 404
K G++ KAL+LH +M S GIKTN +VS IL+ C+ G S+ +++FK FK + IFLD+V
Sbjct: 351 KAGDLSKALALHNDMESKGIKTNCVIVSTILQYFCEKGMHSQVVEEFKRFKDLRIFLDEV 410
Query: 405 CYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKM 464
YN+++DALCKL +V++AV L +EM+G+Q+ D+ +YTT+I+GY GKLVDA +F++M
Sbjct: 411 SYNIVVDALCKLEKVDQAVALLDEMKGKQMDMDIMHYTTLINGYCHVGKLVDAFRVFEEM 470
Query: 465 REMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRV 524
G +PD+ +N+L ++ G +AL +YMK Q +KPN ITHN++IEGLC G+V
Sbjct: 471 EGKGLEPDVVTFNILLAAFSRRGLANEALKLYEYMKSQDLKPNAITHNVMIEGLCIGGKV 530
Query: 525 KEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTN 584
EA AFF ++++K ++NY AM+ GYCEA H E+A + F LS+RG LM KLL
Sbjct: 531 TEAEAFF-CNMEDKSIDNYGAMITGYCEAKHTEKASELFFELSERGLLMDRGYIYKLLEK 589
Query: 585 LLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPD 644
L EG ++A LL TML L+ +PSK Y KVI A AG ++ A VFD L + GL PD
Sbjct: 590 LCEEGEKDRALWLLKTMLDLNMEPSKDMYGKVITACYRAGDMRNAEAVFDILRKSGLTPD 649
Query: 645 LISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHT 704
+ +YT +I+ C+ N L EA N+F+DMK RGIKPD+V +T+L D + K S
Sbjct: 650 IFTYTTMINVCCRQNRLSEARNLFQDMKHRGIKPDLVTFTVLLDGHLK-----RVHSEAF 704
Query: 705 LRSNEEV-VDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVF 763
R +EV + AS+ +EM+ EI PDV +CYT LI C + L DA+ ++
Sbjct: 705 ARKRKEVNLAASNIWKEMQNTEIRPDV----------ICYTALIDGHCKVDRLEDAIGLY 754
Query: 764 DEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLS 796
DEM+ RG+EP+ ALL GC + DVD L+
Sbjct: 755 DEMMYRGVEPDRATCTALLSGCRNRGDVDMVLT 787
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458001|ref|XP_004146736.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 467/754 (61%), Gaps = 33/754 (4%)
Query: 58 IWSGSEEEDSSECNSTS--------EVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTY 109
I+S S++E S+ +TS +VV L+S R++P A +FF L+ RGF+HN+ TY
Sbjct: 36 IFSHSDDEQSTSSFNTSLNVQCKPSKVVQVLESLRREPKIAFSFFCELEERGFQHNISTY 95
Query: 110 AAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNV---FYRVSDAMV 166
AA++RILC G +KLE+L L+ + F+V+DL E+L+ +G V F RV DA++
Sbjct: 96 AALIRILCSWGLGRKLETLFLNLIGS-KKVEFDVLDLIESLN-QGCVVDASFIRVYDALI 153
Query: 167 KAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFS 226
KAY S +FD +++LF+ R GFV FTCN+ +N+L++ G+++M LV+YE++K G
Sbjct: 154 KAYVSVNLFDSVVDLLFRLGRKGFVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRFGCQ 213
Query: 227 LNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDL 286
N +TY VIK LCK+ + E+A D+ EM+ G+ + + I+ LC + GY L
Sbjct: 214 PNDYTYATVIKGLCKIGKMEKAIDIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSGYQL 273
Query: 287 LLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCK 346
L W P++ +AYT VIR FC ++ EAESV L M+ V PD Y LI+GYCK
Sbjct: 274 LQAWRAELFPIDTYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCK 333
Query: 347 CGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVC 405
N+ KALSLH M S GIK+N +VS IL+C +M SE + +FK F+ G+FLD V
Sbjct: 334 KLNLQKALSLHSLMLSKGIKSNCVIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLDNVV 393
Query: 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465
YN+++ ALC+LG++EEA++L EM RQI DV +YTT+I G +GK+ +A+ +F+ ++
Sbjct: 394 YNIVVHALCELGKLEEAIELLEEMTSRQIQMDVMHYTTMIKGLFAQGKIHEAMMMFENLK 453
Query: 466 EMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVK 525
+ G +PD Y+VLA G ++ G V D L YM++ G++ + ++IIE LC G+VK
Sbjct: 454 KNGVEPDSITYSVLAAGFSRNGLVSKVQDLLDYMEEHGLRKDPKMPDLIIENLCIGGKVK 513
Query: 526 EARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNL 585
EA F + L+ K ++NY+AM++GYC A+ + A++ F+ LS+ G +R S +L++ L
Sbjct: 514 EATEIF-NSLEVKTVDNYAAMINGYCAASDTKSAYKLFVNLSKEGIFIRRSSLVRLVSRL 572
Query: 586 LIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDL 645
+E + +A +++ + ++ + + Y+KVI +LC +K A +FD L R GLIPDL
Sbjct: 573 CMENSSFRAIEVMKQLPVMNVEAKEIVYNKVIASLCRVKNMKMAQCLFDCLVRAGLIPDL 632
Query: 646 ISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTL 705
I+YTM+I+G+CK+N LREA + DM+ RG +PD+ +YT+L D K + + SS
Sbjct: 633 ITYTMMINGYCKINYLREAYELLCDMRNRGREPDIFVYTVLLDGGFKTSLQKCSSV---- 688
Query: 706 RSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDE 765
E+ S EMK+M+I+PDV V YTVLI C NNL DA ++F+E
Sbjct: 689 ----EIALTSSIFNEMKDMKITPDV----------VYYTVLIDGYCKMNNLNDAFVLFEE 734
Query: 766 MIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLFA 799
M+D+G+E + V Y ALL C +K +LF+
Sbjct: 735 MVDQGIEADAVTYTALLSSCCRNGYKEKAQTLFS 768
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505420|ref|XP_004162464.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 305/740 (41%), Positives = 461/740 (62%), Gaps = 33/740 (4%)
Query: 58 IWSGSEEEDSSECNSTS--------EVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTY 109
I+S S++E S+ +TS +VV L+S R++P A +FF L+ RGF+HN+ TY
Sbjct: 36 IFSHSDDEQSTSSFNTSLNVQCKPSKVVQVLESLRREPKIAFSFFCELEERGFQHNISTY 95
Query: 110 AAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNV---FYRVSDAMV 166
AA++RILC G +KLE+L L+ + F+V+DL E+L+ +G V F RV DA++
Sbjct: 96 AALIRILCSWGLGRKLETLFLNLIGS-KKVEFDVLDLIESLN-QGCVVDASFIRVYDALI 153
Query: 167 KAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFS 226
KAY S +FD +++LF+ R GFV FTCN+ +N+L++ G+++M LV+YE++K G
Sbjct: 154 KAYVSVNLFDSVVDLLFRLGRKGFVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRFGCQ 213
Query: 227 LNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDL 286
N +TY VIK LCK+ + E+A D+ EM+ G+ + + I+ LC + GY L
Sbjct: 214 PNDYTYATVIKGLCKIGKMEKAIDIFEEMSGYGMVPNAFACAAYIEALCTHDCSTSGYQL 273
Query: 287 LLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCK 346
L W P++ +AYT VIR FC ++ EAESV L M+ V PD Y LI+GYCK
Sbjct: 274 LQAWRAELFPIDTYAYTVVIRGFCDEMKIDEAESVFLDMENYGVVPDAQTYGVLINGYCK 333
Query: 347 CGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVC 405
N+ KALSLH M S GIK+N +VS IL+C +M SE + +FK F+ G+FLD V
Sbjct: 334 KLNLQKALSLHSLMLSKGIKSNCVIVSFILQCFLRMQMYSEVVNQFKVFQGKGVFLDNVV 393
Query: 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465
YN+++ ALC+LG++EEA++L EM RQI DV +YTT+I G +GK+ +A+ +F+ ++
Sbjct: 394 YNIVVHALCELGKLEEAIELLEEMTSRQIQMDVMHYTTMIKGLFAQGKIHEAMMMFENLK 453
Query: 466 EMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVK 525
+ G +PD Y+VLA G ++ G V D L YM++ G++ + ++IIE LC G+VK
Sbjct: 454 KNGVEPDSITYSVLAAGFSRNGLVSKVQDLLDYMEEHGLRKDPKMPDLIIENLCIGGKVK 513
Query: 526 EARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNL 585
EA F + L+ K ++NY+AM++GYC A+ + A++ F+ LS+ G +R S +L++ L
Sbjct: 514 EATEIF-NSLEVKTVDNYAAMINGYCAASDTKSAYKLFVNLSKEGIFIRRSSLVRLVSRL 572
Query: 586 LIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDL 645
+E + +A +++ + ++ + + Y+KVI +LC +K A +FD L R GLIPDL
Sbjct: 573 CMENSSFRAIEVMKQLPVMNVEAKEIVYNKVIASLCRVKNMKMAQCLFDCLVRAGLIPDL 632
Query: 646 ISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTL 705
I+YTM+I+G+CK+N LREA + DM+ RG +PD+ +YT+L D K + + SS
Sbjct: 633 ITYTMMINGYCKINYLREAYELLCDMRNRGREPDIFVYTVLLDGGFKTSLQKCSSV---- 688
Query: 706 RSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDE 765
E+ S EMK+M+I+PDV V YTVLI C NNL DA ++F+E
Sbjct: 689 ----EIALTSSIFNEMKDMKITPDV----------VYYTVLIDGYCKMNNLNDAFVLFEE 734
Query: 766 MIDRGLEPNIVIYKALLCGC 785
M+D+G+E + V Y ALL C
Sbjct: 735 MVDQGIEADAVTYTALLSSC 754
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463937|ref|XP_003602250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355491298|gb|AES72501.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 319/807 (39%), Positives = 464/807 (57%), Gaps = 61/807 (7%)
Query: 8 LNSLRHFIKPVQCIRCRSFSSLPQLPVSSHFQYISSDSEEGEDSSSHSQYIWSGSEEEDS 67
N HF+ P + SFS + ++ F++ SS + + S+S + + S
Sbjct: 6 FNFPSHFLLP---LFKNSFSKTKTIH-NTKFRF-SSSTALAQSSTSETHFT---KPSNSS 57
Query: 68 SECNSTSEVVNKLDSFRKDPGAALTFF-ELLKARGFRHNVHTYAAIVRILCYCGRQKKLE 126
S +TS+++ KL +R +P AL+ F EL GF HN+ TY AI+RILCY ++L+
Sbjct: 58 SFHPNTSQILQKLHLYRNNPSLALSHFSELKNQHGFSHNIQTYVAIIRILCYWNLNRRLD 117
Query: 127 SLLRELV---QKMNDLNFEVIDLFEALSKEGSNV------FYRVSDAMVKAYCSERMFDQ 177
SL R+++ K N L FE+ DLFE L EG NV R VKA MFD
Sbjct: 118 SLFRDIIISHSKQNPL-FEIHDLFEKLL-EGVNVKDKNHYLLRAFVGFVKACVGLNMFDD 175
Query: 178 ALNVLF--QTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIV 235
A++ +F Q R G + + F CNF +N+L+KC +V+M +++ +KS+G N TY I+
Sbjct: 176 AIDFMFMFQIRRFGILPNIFACNFLINRLVKCDQVNMAFEIFDRIKSLGLCPNHHTYAII 235
Query: 236 IKAL-CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG 294
IKAL K ++A V +EM +AGVT + + Y+ I+GLC N + D+GYDLL EN
Sbjct: 236 IKALGTKGGDLKQASGVFDEMKEAGVTPNSYCYAAYIEGLCNNHQSDLGYDLLRALRENN 295
Query: 295 IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKAL 354
P++ +AYTAVIR FC +L +A V M+ R+ PD +VYS+LI GYCK +++KAL
Sbjct: 296 APIDVYAYTAVIRGFCNEMKLDKAMQVFYDMEWQRLVPDCHVYSSLICGYCKTHDLVKAL 355
Query: 355 SLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDAL 413
L+ +M GIKTN +VS IL C +MG+ S + FKE K G+FLD V YN++ D+L
Sbjct: 356 DLYEDMILKGIKTNCVIVSCILHCFAEMGEDSRVVDTFKEVKQSGVFLDGVAYNIVFDSL 415
Query: 414 CKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI 473
KLG+++E + +++ I D+ +YTT I GY L+GK A +FK+M E G KPD+
Sbjct: 416 FKLGKMDEVAGMLEDLKSMHIDFDIKHYTTFIKGYCLQGKPDKAYIIFKEMEEKGFKPDV 475
Query: 474 KAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDD 533
AYNVLA GL V +A+D L YM QGVKPN TH +IIEG C+ G+++EA +F +
Sbjct: 476 VAYNVLAAGLCGNRHVSEAMDLLNYMDSQGVKPNSTTHKIIIEGFCSEGKIEEAEGYF-N 534
Query: 534 DLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNK 593
+K++ +E Y+AMV GYCEA+ +E++++ F LS RG + SC K L
Sbjct: 535 SMKDESVEIYTAMVSGYCEADLIEKSYELFHELSNRGDTAQESSCLKQL----------- 583
Query: 594 AFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIH 653
SK Y KV+ LC G ++ A +FDF G PD+++YT++I
Sbjct: 584 ---------------SKVLYSKVLAELCQKGNMQRARSLFDFFLGRGFTPDVVTYTIMIK 628
Query: 654 GFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVD 713
+C +NCL+EA ++F+DMK RGIKPDV+ YT+L D SK + S + + D
Sbjct: 629 SYCTMNCLQEAHDLFQDMKSRGIKPDVITYTVLLDGKSKQARSKEHFSSQHGKGKDAPYD 688
Query: 714 ASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEP 773
S +MK+ E+SPDV V YTVLI +N DA+ +F+E++ RGLEP
Sbjct: 689 VSTIWRDMKDREVSPDV----------VIYTVLIDGHIKVDNFEDAIRLFNEVMKRGLEP 738
Query: 774 NIVIYKALLCGCPTKKDVDKYLSLFAE 800
+ V Y AL G + + ++L+ E
Sbjct: 739 DNVTYTALFSGLLNSGNSEIAVTLYNE 765
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula] gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 287/722 (39%), Positives = 433/722 (59%), Gaps = 66/722 (9%)
Query: 72 STSEVVNKLDSFRKDPGAALTFFELLKAR-GFRHNVHTYAAIVRILCYCGRQKKLESLLR 130
+T +++ KL ++ +P A ++F LK + GF HN+ TY +I+RILCY +KL+SL
Sbjct: 60 NTFKILQKLYLYQNNPSLAYSYFTQLKNQHGFSHNIQTYTSIIRILCYYNLDRKLDSLFL 119
Query: 131 ELV-QKMNDLNFEVIDLFEALSKEGSNV-----FYRVSDAMVKAYCSERMFDQALNVLFQ 184
+++ D FE+ LF++L + ++V + + VKA S+ MF +A++ L Q
Sbjct: 120 DIIDHSKQDPCFEINVLFDSLFEGVNDVNEDHYLFNAFNGFVKACVSQNMFVEAIDFLLQ 179
Query: 185 TDRPGFVWSK-FTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLA 243
T + + + NF +N+L+K EVDM L L+ KS G N++TY IVIKALCK
Sbjct: 180 TRKNVVILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKALCKKG 239
Query: 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYT 303
+E V +EM +AGV + Y+T I+GLC+N R D+GY +L + ++ +AYT
Sbjct: 240 DWENVVRVFDEMKEAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRNAHVHKYAYT 299
Query: 304 AVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI 363
AVIR FC ++L EAESV L M++ + PD YVY AL+ GYC N KAL+++ M S
Sbjct: 300 AVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMISR 359
Query: 364 GIKTNYVV-SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEA 422
GIKTN V+ S IL CL +MG+ E + F+EFK G+F+D+ YN++ DALCKLG+V++A
Sbjct: 360 GIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDA 419
Query: 423 VKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARG 482
V + +E++ Q+ D+ +YTT+I+GY L+GK ++A LFK+M E G KPD+ AYNVLA G
Sbjct: 420 VGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAG 479
Query: 483 LAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFD---DDLKEKC 539
+ + +A+D L YM+ QGV+PN TH +IIEGLC++G+V+EA FF+ + E
Sbjct: 480 FFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEIS 539
Query: 540 LENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLD 599
+E Y+A+V+GYCEA +E++ + +AF LL
Sbjct: 540 VEIYTALVNGYCEAALIEKSHEL-----------------------------KEAFILLR 570
Query: 600 TMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659
TML+++ KPSK Y K+ ALC G ++ AH +F+ G PD ++YT++I+G+CK N
Sbjct: 571 TMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTN 630
Query: 660 CLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLE 719
CL EA +FKDMK RGI PD V YTI+ + Y K+N LR +A + +
Sbjct: 631 CLPEAHELFKDMKERGITPDAVTYTIMINGYCKMN---------CLR------EAHELFK 675
Query: 720 EMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYK 779
+MKE +G++PD + YTV+I L + + A +++EMID G+ P + +
Sbjct: 676 DMKE----------RGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTPGATLKR 725
Query: 780 AL 781
+
Sbjct: 726 CI 727
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 800 | ||||||
| TAIR|locus:2039558 | 799 | AT2G26790 [Arabidopsis thalian | 0.896 | 0.897 | 0.419 | 1.3e-137 | |
| TAIR|locus:2014759 | 883 | FAC19 "AT1G13800" [Arabidopsis | 0.918 | 0.832 | 0.360 | 7.6e-112 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.901 | 0.794 | 0.255 | 5.1e-67 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.88 | 0.769 | 0.259 | 1.7e-63 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.698 | 0.766 | 0.276 | 1.2e-60 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.593 | 0.487 | 0.298 | 9.4e-60 | |
| TAIR|locus:2016427 | 904 | AT1G19290 [Arabidopsis thalian | 0.876 | 0.775 | 0.252 | 1.8e-59 | |
| TAIR|locus:2099458 | 659 | AT3G48810 "AT3G48810" [Arabido | 0.698 | 0.848 | 0.278 | 4e-58 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.795 | 0.843 | 0.263 | 6.6e-58 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.695 | 0.898 | 0.272 | 2.8e-57 |
| TAIR|locus:2039558 AT2G26790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
Identities = 317/755 (41%), Positives = 445/755 (58%)
Query: 60 SGSEEEDSSECNS---TSEVVNKL-DSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRI 115
S SE++ + N T + +L +S R DP AL+F LK G NV+ YA +VRI
Sbjct: 39 SDSEQQQVNHLNLSKLTQHGLQRLLNSTRDDPNLALSFLRQLKEHGVSPNVNAYATLVRI 98
Query: 116 LCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALS-----KEGSNVFYRVSDAMVKAYC 170
L G KL+S+L EL+ K + F V+DL E + K+ S V RVS A+VKAY
Sbjct: 99 LTTWGLDIKLDSVLVELI-KNEERGFTVMDLIEVIGEQAEEKKRSFVLIRVSGALVKAYV 157
Query: 171 SERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQF 230
S MFD+A +VLFQ+ R V CNF MN++ + G++ M++ L++++K +G N++
Sbjct: 158 SLGMFDEATDVLFQSKRLDCVVDIKACNFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEY 217
Query: 231 TYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKW 290
TY IV+KALC+ EEA +L E N++ + G Y T I GLC G + L+L+
Sbjct: 218 TYAIVVKALCRKGNLEEAAMLLIE-NES---VFG--YKTFINGLCVTGETEKAVALILEL 271
Query: 291 SEN----GIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCK 346
+ G L A V+R FC ++ AESV++ M+++ D Y A+I YCK
Sbjct: 272 IDRKYLAGDDLRA-VLGMVVRGFCNEMKMKAAESVIIEMEEIGFGLDVYACLAVIDRYCK 330
Query: 347 CGNIIKALSLHGEMTSIGIKTNYV-VSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVC 405
N+ +AL +M G+K N V VS+IL+C C+M EA++KFKEF+ M IFLD+VC
Sbjct: 331 NMNLPEALGFLDKMLGKGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMNIFLDRVC 390
Query: 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465
YNV DAL KLG VEEA +L EM+ R IVPDV NYTT+IDGY L+GK+VDA+ L +M
Sbjct: 391 YNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMI 450
Query: 466 EMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVK 525
G PD+ YNVL GLA+ G + L+ + MK +G KPN +T+++IIEGLC + +VK
Sbjct: 451 GNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVK 510
Query: 526 EARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNL 585
EA FF L++KC EN ++ V GYCEA ++A++ F+ L + +R KL +L
Sbjct: 511 EAEDFFSS-LEQKCPENKASFVKGYCEAGLSKKAYKAFVRLE---YPLRKSVYIKLFFSL 566
Query: 586 LIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDL 645
IEGY KA +L M +P ++ K+IGA C ++ A +FD + GLIPDL
Sbjct: 567 CIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDL 626
Query: 646 ISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTL 705
+YT++IH +C+LN L++A ++F+DMK RGIKPDVV YT+L D Y K++ H
Sbjct: 627 FTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKLDPEH-----HET 681
Query: 706 RSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDE 765
S + V E ++E + G GL D VCYTVLI R C NNL A +FD
Sbjct: 682 CSVQGEVGKRKASEVLREFSAA-----GIGL--DVVCYTVLIDRQCKMNNLEQAAELFDR 734
Query: 766 MIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLFAE 800
MID GLEP++V Y L+ K +D ++L E
Sbjct: 735 MIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTE 769
|
|
| TAIR|locus:2014759 FAC19 "AT1G13800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 274/761 (36%), Positives = 423/761 (55%)
Query: 35 SSHFQYIXXXXXXXXXXXXXXQYIWSGSEEEDSSECNSTSEVVNKLDSFRKDPGAALTFF 94
SS F Y+ + + G+ + + E N V+ L+S + DP AL+F
Sbjct: 21 SSRF-YVVPALARTNLTISHSEQVKEGTFDYKALELNDIG-VLRVLNSMKDDPYLALSFL 78
Query: 95 ELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMND-LNFEVIDLFEALSK- 152
+ ++ +V YA ++RI+C G KKL++ L ELV++ ++ F V+DL +A+ +
Sbjct: 79 KRIEGNVTLPSVQAYATVIRIVCGWGLDKKLDTFLFELVRRGDEGRGFSVMDLLKAIGEM 138
Query: 153 EGSNVFY-RVSDAMVKAYCSERMFDQALNVLFQTDRP-GFVWSKFTCNFFMNQLLKCGEV 210
E S V RVS A+VKAY + MFD+A+++ F+ G NF +++++ G
Sbjct: 139 EQSLVLLIRVSTALVKAYANLDMFDEAIDIFFRAYYSLGRAPDIKALNFLISRMIASGRS 198
Query: 211 DMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTI 270
DMV+ + E++ +G + TY +V++AL + EE +L+ + + Y
Sbjct: 199 DMVVGFFWEIERLGLDADAHTYVLVVQALWRNDDKEELEKLLSRLLISETRNPCVFYLNF 258
Query: 271 IQGLCENGRLDVGYDLLLKWSENGIPLN----AFAYTAVIREFCQNSRLVEAESVLLRMK 326
I+GLC N D+ Y LL + I ++ AY V+R C R+ +AESV+L M+
Sbjct: 259 IEGLCLNQMTDIAYFLLQPLRDANILVDKSDLGIAYRKVVRGLCYEMRIEDAESVVLDME 318
Query: 327 QLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYV-VSVILKCLCQMGKTS 385
+ + PD YVYSA+I G+ K NI KA+ + +M + N V VS IL+C CQMG S
Sbjct: 319 KHGIDPDVYVYSAIIEGHRKNMNIPKAVDVFNKMLKKRKRINCVIVSSILQCYCQMGNFS 378
Query: 386 EAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVI 445
EA FKEF+ I LD+VCYNV DAL KLG+VEEA++LF EM G+ I PDV NYTT+I
Sbjct: 379 EAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLI 438
Query: 446 DGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVK 505
G L+GK DA L +M G PDI YNVLA GLA G ++A + LK M+ +GVK
Sbjct: 439 GGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVK 498
Query: 506 PNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMT 565
P +THNM+IEGL +G + +A AF++ L+ K EN ++MV G+C A L+ AF+ F+
Sbjct: 499 PTYVTHNMVIEGLIDAGELDKAEAFYES-LEHKSRENDASMVKGFCAAGCLDHAFERFIR 557
Query: 566 LSQRGFLMRSESCCKLLTNLLIE-GYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAG 624
L F + L T+L E Y +KA LLD M KL +P K+ Y K+IGA C
Sbjct: 558 LE---FPLPKSVYFTLFTSLCAEKDYISKAQDLLDRMWKLGVEPEKSMYGKLIGAWCRVN 614
Query: 625 KIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYT 684
++ A + F+ L ++PDL +YT++I+ +C+LN ++A +F+DMK R +KPDVV Y+
Sbjct: 615 NVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYS 674
Query: 685 ILCDAYSKINKRGSSSSPHTLRS---NEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTV 741
+L ++ +++ + + + +++ L ++K++ M + + PD V
Sbjct: 675 VLLNSDPELDMKREMEAFDVIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVV 734
Query: 742 CYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALL 782
YTVL+ NL + FD ++P++ Y L+
Sbjct: 735 TYTVLLKNKP-ERNLSREMKAFD------VKPDVFYYTVLI 768
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 190/745 (25%), Positives = 351/745 (47%)
Query: 74 SEVVNKLDS-FRKDPGAALTFFELL-----KARGFRHNVHTYAAIVRILCYCGRQKKLES 127
S+V N L S + K ++ + F+LL ++R V + ++ + + L +
Sbjct: 138 SDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSA 197
Query: 128 LLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDR 187
LL LV K ++LF + G + ++++ C + +A ++ +
Sbjct: 198 LLHGLV-KFRHFGL-AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEA 255
Query: 188 PGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEE 247
G + N ++ L K +V + + +++ + TY ++ LCK+ FE
Sbjct: 256 TGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEI 315
Query: 248 AFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIR 307
++++EM + S++++GL + G+++ +L+ + + G+ N F Y A+I
Sbjct: 316 GLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALID 375
Query: 308 EFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKT 367
C+ + EAE + RM ++ + P+ YS LI +C+ G + ALS GEM G+K
Sbjct: 376 SLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKL 435
Query: 368 N-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426
+ Y + ++ C+ G S A E + + V Y +M C G++ +A++L+
Sbjct: 436 SVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495
Query: 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQY 486
+EM G+ I P + +TT++ G G + DA+ LF +M E KP+ YNV+ G +
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEE 555
Query: 487 GSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN---Y 543
G + A + LK M ++G+ P+ ++ +I GLC +G+ EA+ F D K C N Y
Sbjct: 556 GDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICY 615
Query: 544 SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAF-KLLDTML 602
+ ++ G+C LEEA + QRG + C +L + ++ + K F LL M
Sbjct: 616 TGLLHGFCREGKLEEALSVCQEMVQRGVDL-DLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674
Query: 603 KLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLR 662
KP Y +I A G K A ++D + G +P+ ++YT +I+G CK +
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734
Query: 663 EACNIFKDMKLRGIKPDVVLYTILCDAYSK--INKRGSSSSPHT----LRSNEEVVDA-- 714
EA + M+ P+ V Y D +K ++ + + + L +N +
Sbjct: 735 EAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLI 794
Query: 715 SDFLEEMKEMEISPDV--MLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLE 772
F + + E S + M+G G+ PD + YT +I LC N++ A+ +++ M ++G+
Sbjct: 795 RGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIR 854
Query: 773 PNIVIYKALLCGCPTKKDVDKYLSL 797
P+ V Y L+ GC ++ K L
Sbjct: 855 PDRVAYNTLIHGCCVAGEMGKATEL 879
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.7e-63, P = 1.7e-63
Identities = 189/728 (25%), Positives = 331/728 (45%)
Query: 77 VNKLDSFRKDPGAALTFFELLKARG-FRHNVHTYAAIVRILC---YCGRQKKLESLLREL 132
V+ L S DP AL F + ++H+V++YA+++ +L Y G K+ L+ +
Sbjct: 93 VSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKS 152
Query: 133 VQKMNDLNFEVIDLFEALSK-EGSNVFYRVS----DAMVKAYCSERMFDQALNVLFQTDR 187
+ D + V+DL ++K E + Y++ + ++ + + D+ V +
Sbjct: 153 CDSVGDALY-VLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLE 211
Query: 188 PGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEE 247
+ +T N +N K G V+ ++ G + FTY +I C+ +
Sbjct: 212 DKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDS 271
Query: 248 AFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIR 307
AF V NEM G + Y+ +I GLC R+D DL +K ++ YT +I+
Sbjct: 272 AFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIK 331
Query: 308 EFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKT 367
C + R EA +++ M++ + P+ + Y+ LI C KA L G+M G+
Sbjct: 332 SLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP 391
Query: 368 NYVV-SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426
N + + ++ C+ G +A+ + +S + + YN ++ CK V +A+ +
Sbjct: 392 NVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVL 450
Query: 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQY 486
N+M R+++PDV Y ++IDG G A L M + G PD Y + L +
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKS 510
Query: 487 GSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN---Y 543
V +A D ++++GV PNV+ + +I+G C +G+V EA + L + CL N +
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570
Query: 544 SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLK 603
+A++ G C L+EA + + G + L+ LL +G + A+ ML
Sbjct: 571 NALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLS 630
Query: 604 LDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663
KP TY I C G++ A + + +G+ PDL +Y+ LI G+ L
Sbjct: 631 SGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNF 690
Query: 664 ACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKE 723
A ++ K M+ G +P + L ++ K G S E+ S+ +E
Sbjct: 691 AFDVLKRMRDTGCEPSQHTFLSLIKHLLEM-KYGKQKG-----SEPELCAMSNMMEFDTV 744
Query: 724 MEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI-DRGLEPNIVIYKALL 782
+E+ + M+ + P+ Y LI +C NL A VFD M + G+ P+ +++ ALL
Sbjct: 745 VELL-EKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALL 803
Query: 783 -CGCPTKK 789
C C KK
Sbjct: 804 SCCCKLKK 811
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 157/568 (27%), Positives = 274/568 (48%)
Query: 119 CGRQKKL-ESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQ 177
CG + + L+R VQ L E + F L +G V +A++ + +
Sbjct: 161 CGSNDSVFDLLIRTYVQARK-LR-EAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVEL 218
Query: 178 ALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIK 237
A V + R G + +T N +N L K G+++ V +++ G + TY+ +I
Sbjct: 219 AWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLIS 278
Query: 238 ALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPL 297
A EEAF+++N M G + + Y+T+I GLC++G+ + ++ + +G+
Sbjct: 279 AYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSP 338
Query: 298 NAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLH 357
++ Y +++ E C+ +VE E V M+ V PD +S+++S + + GN+ KAL
Sbjct: 339 DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYF 398
Query: 358 GEMTSIG-IKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKL 416
+ G I N + +++++ C+ G S A+ E G +D V YN I+ LCK
Sbjct: 399 NSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKR 458
Query: 417 GEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAY 476
+ EA KLFNEM R + PD T +IDG+ G L +A+ LF+KM+E + D+ Y
Sbjct: 459 KMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTY 518
Query: 477 NVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK 536
N L G + G + A + M + + P I++++++ LC+ G + EA +D+ +
Sbjct: 519 NTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMIS 578
Query: 537 EKCLENY---SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNK 593
+ ++M+ GYC + + + F + GF+ S L+ + E +K
Sbjct: 579 KNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSK 638
Query: 594 AFKLLDTMLKLDAK--PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTML 651
AF L+ M + P TY+ ++ C ++K A V + G+ PD +YT +
Sbjct: 639 AFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCM 698
Query: 652 IHGFCKLNCLREACNIFKDMKLRGIKPD 679
I+GF + L EA I +M RG PD
Sbjct: 699 INGFVSQDNLTEAFRIHDEMLQRGFSPD 726
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 9.4e-60, Sum P(2) = 9.4e-60
Identities = 145/486 (29%), Positives = 250/486 (51%)
Query: 216 LYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLC 275
L EMK ++ +TY V+K +C + A++++ EM +G + Y+T+I+
Sbjct: 404 LLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFL 463
Query: 276 ENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKY 335
+N R +L + E GI + F Y ++I + R+ EA S L+ M + + P+ +
Sbjct: 464 QNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAF 523
Query: 336 VYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSV-ILKCLCQMGKTSEAIKKFKEF 394
Y A ISGY + A EM G+ N V+ ++ C+ GK EA ++
Sbjct: 524 TYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSM 583
Query: 395 KSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKL 454
GI D Y V+M+ L K +V++A ++F EM G+ I PDV +Y +I+G+ G +
Sbjct: 584 VDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNM 643
Query: 455 VDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMI 514
A +F +M E G P++ YN+L G + G + A + L M +G+ PN +T+ I
Sbjct: 644 QKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTI 703
Query: 515 IEGLCTSGRVKEARAFFDD-DLKEKCLEN--YSAMVDGYCEANHLEEAFQFFMTLSQRGF 571
I+G C SG + EA FD+ LK ++ Y+ +VDG C N +E A F T +++G
Sbjct: 704 IDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKG- 761
Query: 572 LMRSESCCKLLTNLLIE-GYNNKAFKLLDTML--KLD--AKPSKTTYDKVIGALCLAGKI 626
S + L N + + G ++L+ ++ D KP+ TY+ +I LC G +
Sbjct: 762 CASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNL 821
Query: 627 KWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTIL 686
+ A ++F + L+P +I+YT L++G+ K+ E +F + GI+PD ++Y+++
Sbjct: 822 EAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVI 881
Query: 687 CDAYSK 692
+A+ K
Sbjct: 882 INAFLK 887
|
|
| TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 1.8e-59, P = 1.8e-59
Identities = 185/733 (25%), Positives = 342/733 (46%)
Query: 73 TSEVVNK-LDSFRKDPGAALTFFELL-KARGFRHNVHTYAAIVRILCYCGRQKKLESLLR 130
+ E++N L R +P A L F L K + FR + Y +V IL ++ +S L
Sbjct: 69 SDELLNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYLC 128
Query: 131 ELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGF 190
ELV +N F V + KE S V D ++K Y + + AL+V G
Sbjct: 129 ELVA-LNHSGFVVWGELVRVFKEFS-FSPTVFDMILKVYAEKGLVKNALHVFDNMGNYGR 186
Query: 191 VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFD 250
+ S +CN ++ L++ GE + L +Y++M S S + FT IV+ A C+ ++A
Sbjct: 187 IPSLLSCNSLLSNLVRKGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMV 246
Query: 251 VLNEMNKA-GVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREF 309
E + G+ L+ Y+++I G G ++ +L SE G+ N YT++I+ +
Sbjct: 247 FAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGY 306
Query: 310 CQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNY 369
C+ + EAE V +K+ ++ D+++Y L+ GYC+ G I A+ +H M IG++TN
Sbjct: 307 CKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNT 366
Query: 370 VV-SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNE 428
+ + ++ C+ G+ EA + F + D YN ++D C+ G V+EA+KL ++
Sbjct: 367 TICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQ 426
Query: 429 MEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGS 488
M +++VP V Y ++ GY G D + L+K M + G D + + L L + G
Sbjct: 427 MCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGD 486
Query: 489 VRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC---LENYSA 545
+A+ + + +G+ + IT N++I GLC +V EA+ D+ +C ++ Y A
Sbjct: 487 FNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQA 546
Query: 546 MVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLD 605
+ GY + +L+EAF + ++G E L++ + NK L+ +
Sbjct: 547 LSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARG 606
Query: 606 AKPSKTTYDKVIGALCLAGKIKWAHQV-FDFLTRHGLIPDLISYTMLIHGFCKLNCLREA 664
P+ TY +I C G I A+ F+ + + G+ ++ + + + +L+ + EA
Sbjct: 607 LTPTVATYGALITGWCNIGMIDKAYATCFEMIEK-GITLNVNICSKIANSLFRLDKIDEA 665
Query: 665 CNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEM 724
C + + +V + +L Y + K +S T +++ ++ + K++
Sbjct: 666 CLLLQK---------IVDFDLLLPGYQSL-KEFLEASATTCLKTQKIAESVEN-STPKKL 714
Query: 725 EISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCG 784
+ +++ + +C +L L L+ D I P+ Y L+ G
Sbjct: 715 LVPNNIVYNVAIAG--LCKA---GKLEDARKLFSDLLSSDRFI-----PDEYTYTILIHG 764
Query: 785 CPTKKDVDKYLSL 797
C D++K +L
Sbjct: 765 CAIAGDINKAFTL 777
|
|
| TAIR|locus:2099458 AT3G48810 "AT3G48810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 164/588 (27%), Positives = 289/588 (49%)
Query: 126 ESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAY-CSERMFDQALNVLFQ 184
+S+ + K L FEV+ A+ + +V Y + ++ + CSE +F ++V Q
Sbjct: 64 KSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQ 123
Query: 185 T---DRPGFVW---SKFTC-------NFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFT 231
+R ++ +F C N ++ LL + M+ ++Y +MK GF N FT
Sbjct: 124 VGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFT 183
Query: 232 YDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWS 291
Y++++KALCK + + A +L EM+ G +Y+T+I +CE G + G +L +
Sbjct: 184 YNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGREL----A 239
Query: 292 ENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNII 351
E P+ + Y A+I C+ A ++ M + ++P+ YS LI+ C G I
Sbjct: 240 ERFEPVVS-VYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIE 298
Query: 352 KALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEF-KSMGIFLDQVCYNVI 409
A S +M G N Y +S ++K G T +A+ + + + G+ + V YN +
Sbjct: 299 LAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTL 358
Query: 410 MDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGH 469
+ C G + +AV +F+ ME P++ Y ++I+G+ RG L A+ ++ KM G
Sbjct: 359 VQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGC 418
Query: 470 KPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARA 529
P++ Y + L ++ ++A ++ M K+ P+V T N I+GLC +GR+ A
Sbjct: 419 CPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEK 478
Query: 530 FFDD-DLKEKCLEN---YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNL 585
F + + +C N Y+ ++DG +AN +EEA+ + RG S + LL
Sbjct: 479 VFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGS 538
Query: 586 LIEGYNNKAFKLLDTMLKLDAK-PSKTTYDKVIGALCLAGKIKWAHQVFDFLT--RHGLI 642
G A +L+ M+ +D K P + T + +I A C GK + A Q+ D ++ R
Sbjct: 539 CNAGLPGIALQLVGKMM-VDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWR 597
Query: 643 PDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAY 690
PD+ISYT +I G C+ NC + + + M GI P + +++L + +
Sbjct: 598 PDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCF 645
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 180/684 (26%), Positives = 316/684 (46%)
Query: 67 SSECNSTSEVVNKLDSFRKDP--GAALTFFELL-KARGFRHNVHTYAAIVRILCYCGRQK 123
S+ +ST V LDS R P AAL F L K F Y IL GR
Sbjct: 43 SAALSSTD--VKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYE---EILLRLGRSG 97
Query: 124 KLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVL- 182
+ + +++++ M E+ G++ F ++++Y + D+ L+V+
Sbjct: 98 SFDDM-KKILEDMKSSRCEM----------GTSTFL----ILIESYAQFELQDEILSVVD 142
Query: 183 FQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKL 242
+ D G N +N L+ + +V + + +M G + T++++IKALC+
Sbjct: 143 WMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRA 202
Query: 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAY 302
+ A +L +M G+ ++T++QG E G LD + + E G + +
Sbjct: 203 HQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSV 262
Query: 303 TAVIREFCQNSRLVEAESVLLRMK-QLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMT 361
++ FC+ R+ +A + + M Q PD+Y ++ L++G CK G++ A+ + M
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVML 322
Query: 362 SIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVE 420
G + Y + ++ LC++G+ EA++ + + + V YN ++ LCK +VE
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382
Query: 421 EAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLA 480
EA +L + + I+PDV + ++I G L A+ LF++MR G +PD YN+L
Sbjct: 383 EATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLI 442
Query: 481 RGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCL 540
L G + +AL+ LK M+ G +VIT+N +I+G C + + +EA FD+
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVS 502
Query: 541 EN---YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKL 597
N Y+ ++DG C++ +E+A Q + G + LLT+ G KA +
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADI 562
Query: 598 LDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657
+ M +P TY +I LC AG+++ A ++ + G+ +Y +I G +
Sbjct: 563 VQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFR 622
Query: 658 LNCLREACNIFKDM-KLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASD 716
EA N+F++M + PD V Y I+ RG + +R +A D
Sbjct: 623 KRKTTEAINLFREMLEQNEAPPDAVSYRIVF--------RGLCNGGGPIR------EAVD 668
Query: 717 FLEEMKEMEISPDV----MLGQGL 736
FL E+ E P+ ML +GL
Sbjct: 669 FLVELLEKGFVPEFSSLYMLAEGL 692
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 156/573 (27%), Positives = 274/573 (47%)
Query: 132 LVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNV-------LFQ 184
++Q++ LN + + + L K G+++ + S K ER+ + +++ LF+
Sbjct: 1 MIQRLIPLNRKASNFTQILEK-GTSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDLFE 59
Query: 185 T---DRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK 241
+ RP + + N + + + + D+VL + M+ G + +T I+I C+
Sbjct: 60 SMIQSRP--LPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCR 117
Query: 242 LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFA 301
+ AF VL K G +ST++ G C GR+ L+ + E +
Sbjct: 118 KKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVT 177
Query: 302 YTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMT 361
+ +I C R+ EA ++ RM + PD+ Y +++ CK GN AL L +M
Sbjct: 178 VSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME 237
Query: 362 SIGIKTNYV-VSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVE 420
IK + V S+++ LC+ G +A+ F E + GI D V Y+ ++ LC G+ +
Sbjct: 238 ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWD 297
Query: 421 EAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLA 480
+ K+ EM GR I+PDV ++ +ID ++ GKL++A L+ +M G PD YN L
Sbjct: 298 DGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 357
Query: 481 RGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCL 540
G + + +A M +G +P+++T++++I C + RV + F + + +
Sbjct: 358 DGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLI 417
Query: 541 EN---YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKL 597
N Y+ +V G+C++ L A + F + RG + LL L G NKA ++
Sbjct: 418 PNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 477
Query: 598 LDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657
+ M K Y+ +I +C A K+ A +F L+ G+ PD+++Y ++I G CK
Sbjct: 478 FEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 537
Query: 658 LNCLREACNIFKDMKLRGIKPDVVLYTILCDAY 690
L EA +F+ MK G PD Y IL A+
Sbjct: 538 KGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O81028 | PP171_ARATH | No assigned EC number | 0.4172 | 0.8712 | 0.8723 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 800 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 2e-20
Identities = 140/596 (23%), Positives = 235/596 (39%), Gaps = 97/596 (16%)
Query: 265 HNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAES---- 320
H+ ++ ++ LC +G+L+ LL E +P++ AY A+ R C+ R VE S
Sbjct: 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCS 110
Query: 321 -VLLRMKQLRV-------------------------TPDKYVYS--ALISGYCKCGNIIK 352
L L V P++ ++S L+ GY K G +
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE 170
Query: 353 ALSLHGEMTSIGIKTN-YVVSVILKCLC------QMGKTSEA-IKKFKEFKSMGIFLDQV 404
AL L+ M G++ + Y +L+ C G+ A + +F G LD
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRT-CGGIPDLARGREVHAHVVRF------GFELDVD 223
Query: 405 CYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKM 464
N ++ K G+V A +F+ M R D ++ +I GY G+ ++ + LF M
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTM 279
Query: 465 REMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRV 524
RE+ PD+ + G R + Y+ K G +V N +I+ + G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 525 KEARAFFDDDLKEKCLENYSAMVDGYCEANHL-EEAFQFFMTLSQRGFLMRSESCCKLLT 583
EA F ++ K +++AM+ GY E N L ++A + + + Q + +L+
Sbjct: 340 GEAEKVF-SRMETKDAVSWTAMISGY-EKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGAL----CLAGKIKWAHQVFDFLTRH 639
G + KL +L + +Y V AL I A +VF +
Sbjct: 398 ACACLGDLDVGVKL----HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
Query: 640 GLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKIN--KRG 697
D+IS+T +I G N EA F+ M L +KP+ V A ++I G
Sbjct: 454 ----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG 508
Query: 698 SSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVML------GQ---------GLEPDTVC 742
H LR+ + FL P+ +L G+ E D V
Sbjct: 509 KEIHAHVLRTG---IGFDGFL---------PNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556
Query: 743 YTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLF 798
+ +L+ A+ +F+ M++ G+ P+ V + +LLC C V + L F
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 9e-20
Identities = 95/394 (24%), Positives = 156/394 (39%), Gaps = 57/394 (14%)
Query: 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAI-GLFKKM 464
+N++M +++ A+++ ++ + D YTT+I GK VDA+ +F +M
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK-VDAMFEVFHEM 498
Query: 465 REMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRV 524
G + ++ + L G A+ G V A M+ + VKP+ + N +I SG V
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 525 KEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTN 584
RAF D L E E + D H+ G LM+ +C
Sbjct: 559 --DRAF--DVLAEMKAETHPIDPD------HI-----------TVGALMK--ACAN---- 591
Query: 585 LLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPD 644
G ++A ++ + + + K + Y + + G +A ++D + + G+ PD
Sbjct: 592 ---AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 645 LISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHT 704
+ ++ L+ L +A I +D + +GIK V Y+ L A S
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA----------- 697
Query: 705 LRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFD 764
+ A + E++K + L P LI LC N L AL V
Sbjct: 698 ----KNWKKALELYEDIKSI----------KLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 765 EMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLF 798
EM GL PN + Y LL K D D L L
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 1e-19
Identities = 73/309 (23%), Positives = 136/309 (44%), Gaps = 29/309 (9%)
Query: 395 KSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKL 454
+ G+ D Y ++ K G+V+ ++F+EM + +V + +IDG G++
Sbjct: 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
Query: 455 VDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQG--VKPNVITHN 512
A G + MR KPD +N L Q G+V A D L MK + + P+ IT
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583
Query: 513 MIIEGLCTSGRVKEARAFF----DDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQ 568
+++ +G+V A+ + + ++K E Y+ V+ + + A + + +
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
Query: 569 RG------FLMRSESCCKLLTNLLIE-----GYNNKAFKLLDTMLKLDAKPSKTTYDKVI 617
+G F + L++ G +KAF++L K K +Y ++
Sbjct: 643 KGVKPDEVFF-----------SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIK 677
GA A K A ++++ + L P + + LI C+ N L +A + +MK G+
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 678 PDVVLYTIL 686
P+ + Y+IL
Sbjct: 752 PNTITYSIL 760
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 1e-18
Identities = 100/431 (23%), Positives = 180/431 (41%), Gaps = 18/431 (4%)
Query: 202 NQLLKCGEVDMVLVLYEEMKSVG-FSLNQFTYDIVIKALCKLAR-FEEAFDVLNEMNKAG 259
N+LL+ G + + L E+M+ G +++ + KA CK R +EAF +
Sbjct: 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKA-CKKQRAVKEAFRFAKLIRNP- 435
Query: 260 VTLHGHNYSTIIQGLCENGR-LDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEA 318
TL N ++ +C + + +D +L E G+ + YT +I C S V+A
Sbjct: 436 -TLSTFN---MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST-CAKSGKVDA 490
Query: 319 E-SVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKC 377
V M V + + + ALI G + G + KA +G M S +K + VV L
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 378 LC-QMGKTSEAIKKFKEFKSMG--IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQI 434
C Q G A E K+ I D + +M A G+V+ A +++ + I
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 435 VPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALD 494
YT ++ +G A+ ++ M++ G KPD ++ L G + A +
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 495 CLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK---CLENYSAMVDGYC 551
L+ +KQG+K ++++ ++ + K+A ++D K + +A++ C
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 552 EANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKT 611
E N L +A + + + G + + LL + + LL + KP+
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790
Query: 612 TYDKVIGALCL 622
+ G LCL
Sbjct: 791 MCRCITG-LCL 800
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-18
Identities = 82/394 (20%), Positives = 162/394 (41%), Gaps = 19/394 (4%)
Query: 142 EVIDLFEALSKEGS-NVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFF 200
E ++LFE L + DA+V+A + + V + + GF ++ N
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 201 MNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGV 260
+ +KCG + L++EM N ++ +I L + EAF + EM + G
Sbjct: 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 261 TLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAES 320
+ +++ G G L + G+ + F A+I + + + +A
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 321 VLLRMKQLRVTPDKYV--YSALISGYCKCGNIIKALSLHGEMTSIGIKT-NYVVSVILKC 377
V M P+K ++++++GY G +AL L+ EM G+ + S++++
Sbjct: 281 VFDGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 378 LCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPD 437
++ A + G LD V ++D K G +E+A +F+ M + ++
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI-- 392
Query: 438 VANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLK 497
++ +I GY G+ A+ +F++M G P+ + + G + +
Sbjct: 393 --SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 498 YMKK-QGVKPNVITHNMIIEGLCTSGRVKEARAF 530
M + +KP + + +IE L G + EA A
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 2e-14
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 402 DQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGY 448
D V YN ++D CK G+VEEA+KLFNEM+ R I P+V Y+ +IDG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-13
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 643 PDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692
PD+++Y LI G+CK + EA +F +MK RGIKP+V Y+IL D K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 4e-13
Identities = 63/281 (22%), Positives = 111/281 (39%), Gaps = 40/281 (14%)
Query: 396 SMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLV 455
S G DQ N ++ K G + +A +LF+EM R + ++ T+I G + G
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYR 206
Query: 456 DAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMII 515
+A LF++M E G + + + V+ R A GS R + K GV + +I
Sbjct: 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266
Query: 516 EGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRS 575
+ G +++AR FD + EK +++M+ GY
Sbjct: 267 DMYSKCGDIEDARCVFDG-MPEKTTVAWNSMLAGYA------------------------ 301
Query: 576 ESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDF 635
+ GY+ +A L M + T+ +I ++ A Q
Sbjct: 302 -----------LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350
Query: 636 LTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGI 676
L R G D+++ T L+ + K + +A N+F M + +
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-12
Identities = 78/386 (20%), Positives = 144/386 (37%), Gaps = 64/386 (16%)
Query: 433 QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMG-HKPDIKAYNVLARGLAQYGSVRD 491
QI + + I+ + G+ +A+ LF+ + Y+ L S+R
Sbjct: 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRC 141
Query: 492 ALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYC 551
+++ G +P+ N ++ G + +AR FD+ + E+ L ++ ++ G
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE-MPERNLASWGTIIGGLV 200
Query: 552 EANHLEEAFQFFMTLSQRG---------------------FLMRSESCCKLLTNL----- 585
+A + EAF F + + G + CC L T +
Sbjct: 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260
Query: 586 ----LIEGYNNKAFKLLDTMLKLDAKPSKTT--YDKVIGALCLAGKIKWAHQVFDFLTRH 639
LI+ Y+ K + D D P KTT ++ ++ L G + A ++ +
Sbjct: 261 VSCALIDMYS-KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 640 GLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSS 699
G+ D +++++I F +L L A + G D+V T L D YSK +
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR---- 375
Query: 700 SSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDA 759
+ DA + + M + + + LIA A
Sbjct: 376 -----------MEDARNVFDRMPRKNL--------------ISWNALIAGYGNHGRGTKA 410
Query: 760 LIVFDEMIDRGLEPNIVIYKALLCGC 785
+ +F+ MI G+ PN V + A+L C
Sbjct: 411 VEMFERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 471 PDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLC 519
PD+ YN L G + G V +AL MKK+G+KPNV T++++I+GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-11
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 436 PDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ 485
PDV Y T+IDGY +GK+ +A+ LF +M++ G KP++ Y++L GL +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-10
Identities = 114/569 (20%), Positives = 214/569 (37%), Gaps = 129/569 (22%)
Query: 195 FTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKA---LCKLAR------- 244
F+ N + K G D L LY M G + +T+ V++ + LAR
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212
Query: 245 -----FEEAFDVLNEMNKAGVTLHGH--------------------NYSTIIQGLCENGR 279
FE DV+N A +T++ +++ +I G ENG
Sbjct: 213 VVRFGFELDVDVVN----ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGE 268
Query: 280 LDVGYDLLLKWSENGIPLNAFAYTAVI------------RE---------------FCQN 312
G +L E + + T+VI RE C N
Sbjct: 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC-N 327
Query: 313 S---------RLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI 363
S EAE V RM+ T D ++A+ISGY K G KAL + M
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383
Query: 364 GIKTN--YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421
+ + + SV+ C C +G +K + + G+ V N +++ K +++
Sbjct: 384 NVSPDEITIASVLSACAC-LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLAR 481
A+++F+ + + DV ++T++I G L + +A+ F++M + KP+
Sbjct: 443 ALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALS 497
Query: 482 GLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLE 541
A+ G++ + ++ + G+ + N +++ GR+ A F+ EK +
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN--SHEKDVV 555
Query: 542 NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM 601
+++ ++ GY G + A +L + M
Sbjct: 556 SWNILLTGYVA-----------------------------------HGKGSMAVELFNRM 580
Query: 602 LKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLT-RHGLIPDLISYTMLIHGFCKLNC 660
++ P + T+ ++ A +G + + F + ++ + P+L Y ++ +
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 661 LREACNIFKDMKLRGIKPDVVLYTILCDA 689
L EA N M I PD ++ L +A
Sbjct: 641 LTEAYNFINKMP---ITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 298 NAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCK 346
+ Y +I +C+ ++ EA + MK+ + P+ Y YS LI G CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 195 FTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK 241
T N ++ K G+V+ L L+ EMK G N +TY I+I LCK
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 738 PDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGC 785
PD V Y LI C + +AL +F+EM RG++PN+ Y L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 5e-09
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 228 NQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLC 275
+ TY+ +I CK + EEA + NEM K G+ + + YS +I GLC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 2e-08
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 397 MGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEME 430
G+ D V YN ++D LC+ G V+EAV+L +EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 506 PNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN---YSAMVDGYC 551
P+V+T+N +I+G C G+V+EA F++ K N YS ++DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-08
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 502 QGVKPNVITHNMIIEGLCTSGRVKEARAFFDD 533
+G+KP+V+T+N +I+GLC +GRV EA D+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657
TY+ +I C GK++ A ++F+ + + G+ P++ +Y++LI G CK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 6e-08
Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 31/241 (12%)
Query: 214 LVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQG 273
L LYE++KS+ T + +I ALC+ + +A +VL+EM + G+ + YS ++
Sbjct: 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763
Query: 274 LCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD 333
DVG DLL + E+GI N + + LR +
Sbjct: 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-------------GLCLRRFE------ 804
Query: 334 KYVYSALISGYCKCGNI-IK------ALSLHGEMTSIGIK-TNYVVSVILKCLCQMGKTS 385
K G I+ AL ++ E S G T V+S +L CL
Sbjct: 805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL---QLPH 861
Query: 386 EAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVE-EAVKLFNEMEGRQIVPDVANYTTV 444
+A + + +++GI D + + + GE + A L E +VP V+ +
Sbjct: 862 DATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSP 921
Query: 445 I 445
I
Sbjct: 922 I 922
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 404 VCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDV 438
V YN ++D LCK G VEEA++LF EM+ R I PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 646 ISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV 680
++Y LI G CK + EA +FK+MK RGI+PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 332 PDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQ 380
PD Y+ LI GYCK G + +AL L EM GIK N Y S+++ LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 370 VVS--VILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCK 415
VV+ ++ C+ GK EA+K F E K GI + Y++++D LCK
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 640 GLIPDLISYTMLIHGFCKLNCLREACNIFKDMK 672
GL PD+++Y LI G C+ + EA + +M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 404 VCYNVIMDALCKLGEVEEAVKLFNEMEGRQI 434
V YN ++ CK G++EEA++LF EM+ + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 224 GFSLNQFTYDIVIKALCKLARFEEAFDVLNEM 255
G + TY+ +I LC+ R +EA ++L+EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 441 YTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI 473
Y T+IDG G++ +A+ LFK+M+E G +PD+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 335 YVYSALISGYCKCGNIIKALSLHGEMTSIGI 365
Y++LISGYCK G + +AL L EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (108), Expect = 3e-05
Identities = 36/195 (18%), Positives = 74/195 (37%), Gaps = 5/195 (2%)
Query: 374 ILKCLCQMGKTSEAIKKFKEFKSMGI-FLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGR 432
+ L ++G+ EA++ ++ + + + L LG+ EEA++L +
Sbjct: 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL 124
Query: 433 QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPD--IKAYNVLARGLAQYGSVR 490
PD+A + G +A+ L++K E+ + + +A L L G
Sbjct: 125 DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184
Query: 491 DALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDD--DLKEKCLENYSAMVD 548
+AL+ L+ K + + G+ +EA +++ +L E +
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244
Query: 549 GYCEANHLEEAFQFF 563
E EEA +
Sbjct: 245 LLLELGRYEEALEAL 259
|
Length = 291 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 63/324 (19%), Positives = 129/324 (39%), Gaps = 56/324 (17%)
Query: 164 AMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSV 223
AM+ Y + D+AL ++ + T ++ G++D+ + L+E +
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418
Query: 224 GFSLNQFTYDIVIKAL----CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGR 279
G +Y +V AL K ++A +V + + + V ++++II GL N R
Sbjct: 419 GL----ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNR 470
Query: 280 LDVGYDLLLKWSENGIPL--NAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVY 337
++ L+ + + + L N+ A + + L+ + + + + + D ++
Sbjct: 471 ---CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527
Query: 338 SALISGYCKCG-------------------NII-----------KALSLHGEMTSIGIKT 367
+AL+ Y +CG NI+ A+ L M G+
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587
Query: 368 NYVVSVILKCLCQMGKTSEAIKKFKEFKSM----GIFLDQVCYNVIMDALCKLGEVEEAV 423
+ V + L C C ++ + + F SM I + Y ++D L + G++ EA
Sbjct: 588 DEVTFISLLCAC--SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645
Query: 424 KLFNEMEGRQIVPDVANYTTVIDG 447
N+M I PD A + +++
Sbjct: 646 NFINKMP---ITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 8e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 330 VTPDKYVYSALISGYCKCGNIIKALSLHGEM 360
+ PD Y+ LI G C+ G + +A+ L EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 646 ISYTMLIHGFCKLNCLREACNIFKDMKLRGI 676
++Y LI G+CK L EA +FK+MK +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 25/74 (33%)
Query: 678 PDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLE 737
PDVV Y L D Y K K V +A EMK+ G++
Sbjct: 1 PDVVTYNTLIDGYCKKGK---------------VEEALKLFNEMKKR----------GIK 35
Query: 738 PDTVCYTVLIARLC 751
P+ Y++LI LC
Sbjct: 36 PNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 734 QGLEPDTVCYTVLIARLCYTNNLVDALIVFDEM 766
+GL+PD V Y LI LC + +A+ + DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 432 RQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465
+ + PDV Y T+IDG G++ +A+ L +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 230 FTYDIVIKALCKLARFEEAFDVLNEMNKAGV 260
TY+ +I LCK R EEA ++ EM + G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 404 VCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP 436
YN ++ AL K G+ + A+ + EM+ + P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 8e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 475 AYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNV 508
YN L GL + G V +AL+ K MK++G++P+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 441 YTTVIDGYILRGKLVDAIGLFKKMREMG 468
Y ++I GY GKL +A+ LFK+M+E G
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 230 FTYDIVIKALCKLARFEEAFDVLNEMNKAGV 260
TY+ +I CK + EEA ++ EM + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 476 YNVLARGLAQYGSVRDALDCLKYMKKQGVKP 506
YN L LA+ G AL L+ MK G+KP
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 230 FTYDIVIKALCKLARFEEAFDVLNEMNKAGVT 261
TY+ ++ AL K + A VL EM +G+
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 800 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.63 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.45 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.45 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.36 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.31 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.31 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.3 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.3 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.19 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.16 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.05 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.04 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.99 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.92 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.49 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.47 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.44 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.4 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.37 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.36 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.36 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.33 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.24 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.24 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.24 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.21 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.96 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.95 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.86 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.83 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.82 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.81 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.72 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.68 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.67 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.65 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.64 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.63 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.57 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.55 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.5 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.5 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.45 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.44 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.41 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.36 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.35 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.35 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.35 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.31 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.3 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.3 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.3 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.27 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.27 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.25 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.24 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.22 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.21 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.2 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.19 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.15 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.13 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.12 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.11 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.99 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.97 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.95 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.93 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.92 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.92 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.89 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.89 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.85 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.78 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.71 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.66 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.55 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.36 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.31 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.99 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.95 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.94 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.9 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.86 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.82 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.79 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.71 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.53 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.28 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.27 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.19 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.03 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.02 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.95 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.92 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.76 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.75 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.73 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.67 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.6 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.52 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.4 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.31 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.28 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.26 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.19 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.07 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.06 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.03 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.01 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.95 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.89 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.88 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.86 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.81 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.73 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.7 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.69 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.67 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.55 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.55 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.43 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.18 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.73 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.64 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.64 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.48 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.38 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.09 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.04 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.02 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.85 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.82 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.81 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.74 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.71 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.33 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.28 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.27 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.84 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.29 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.25 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.07 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.85 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.66 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.26 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.65 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.51 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.13 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.56 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.38 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.93 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.86 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.8 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.29 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.75 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.74 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.35 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.96 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.84 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.17 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.98 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.81 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 83.47 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 83.38 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.36 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.31 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.11 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.68 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 82.68 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.0 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.77 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.61 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.47 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.67 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.13 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-80 Score=709.74 Aligned_cols=631 Identities=19% Similarity=0.273 Sum_probs=597.5
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 003725 103 RHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVL 182 (800)
Q Consensus 103 ~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 182 (800)
.|+..+++.+++.|++.|++++|..++.+|.+. |..++..+|..++.+|...+.++.|..++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~------------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 109 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQEL------------------RVPVDEDAYVALFRLCEWKRAVEEGSRVC 109 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc------------------CCCCChhHHHHHHHHHhhCCCHHHHHHHH
Confidence 567888999999999999999999999988765 44567778999999999999999999999
Q ss_pred HHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 003725 183 FQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTL 262 (800)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (800)
..+.+.+..++...+|.++..|++.|+++.|..+|++|.. ||..+|+.+|.+|++.|++++|.++|++|...|+.|
T Consensus 110 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P 185 (857)
T PLN03077 110 SRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185 (857)
T ss_pred HHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999988889999999999999999999999999999974 789999999999999999999999999999999999
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003725 263 HGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALIS 342 (800)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 342 (800)
|..||+.++.+|+..++++.+.+++..+.+.|+.|+..+|+.++.+|++.|++++|.++|++|.. ||..+|+++|.
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~ 261 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMIS 261 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999974 78999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (800)
+|++.|++++|+++|++|...|+.|+ .+++.++.+|++.|+.+.+.+++..+.+.|..||..+|++|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKK 501 (800)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (800)
|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+
T Consensus 342 A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999974 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 003725 502 QGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKL 581 (800)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 581 (800)
.|+.|+..+++.++.+|++.|++++|.++|+ .+.+++..+|+.++.+|++.|+.++|+.+|++|.. +..||..++..+
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~-~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFH-NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHH-hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 9999999999999999999999999999999 67778888999999999999999999999999986 589999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 582 LTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCL 661 (800)
Q Consensus 582 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 661 (800)
+.+|++.|+.+.+.+++..+.+.|+.+|..++++++++|+++|++++|..+|+.+ .||..+||+||.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 47999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHH-HCCCCchhhhccCCCCCc
Q 003725 662 REACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMK-EMEISPDVMLGQGLEPDT 740 (800)
Q Consensus 662 ~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~~~~~~ 740 (800)
++|.++|++|.+.|+.||.+||+.++.+|++ .|..++|.++|+.|. ..++.| +.
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~---------------~g~v~ea~~~f~~M~~~~gi~P----------~~ 625 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSR---------------SGMVTQGLEYFHSMEEKYSITP----------NL 625 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhh---------------cChHHHHHHHHHHHHHHhCCCC----------ch
Confidence 9999999999999999999999999999998 456899999999998 567777 99
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccccCCCCHHHHHhhh
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLF 798 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 798 (800)
.+|++++++|++.|++++|.+++++| +++||..+|++|+++|...|+.+.|+...
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999999999999999999 58999999999999999999999876554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=680.60 Aligned_cols=651 Identities=17% Similarity=0.207 Sum_probs=578.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchH-----------
Q 003725 74 SEVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFE----------- 142 (800)
Q Consensus 74 ~~v~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~----------- 142 (800)
..++..+.+ .|++..|+.+|+.|.+.|+.|+..+|..+++.+.+.+....+..++..+++.....+..
T Consensus 55 n~~i~~l~~-~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 55 NSQLRALCS-HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 344444444 58999999999999999999999999999999999999999999999888775433221
Q ss_pred ------HHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHH
Q 003725 143 ------VIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVL 216 (800)
Q Consensus 143 ------~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 216 (800)
...+|+.|. .++..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.+++++.+.++++.+.++
T Consensus 134 ~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 134 FGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred CCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 122333332 3466789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 003725 217 YEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIP 296 (800)
Q Consensus 217 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 296 (800)
+..|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999986 478889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHH
Q 003725 297 LNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVIL 375 (800)
Q Consensus 297 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~ 375 (800)
||..+|+.++.++++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ++ .+|+.++
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 44 7899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 376 KCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLV 455 (800)
Q Consensus 376 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 455 (800)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 456 DAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDL 535 (800)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (800)
+|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +++||..|+..++.+|++.|.++.+.+++..++
T Consensus 442 ~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 442 KALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 99999999864 5888999999999999999999999999986 589999999999999999999999999999666
Q ss_pred hcc---CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003725 536 KEK---CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTT 612 (800)
Q Consensus 536 ~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 612 (800)
... +...+++|+++|++.|+.++|.++|+++ .+|..+|+.++.+|+..|+.++|+++|++|.+.|+.||..|
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 543 3445899999999999999999999887 46888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 003725 613 YDKVIGALCLAGKIKWAHQVFDFLT-RHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYS 691 (800)
Q Consensus 613 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~ 691 (800)
|+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++|+++|++.|++++|.+++++|. ++||..+|++|+.+|.
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACR 668 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999 68999999999999999999999999999999984 7999999999999997
Q ss_pred ccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 692 KINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGL 771 (800)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 771 (800)
. .++.+.++...+.+.+ +.|+ +...|..|.+.|+..|++++|.++.+.|.+.|+
T Consensus 669 ~---------------~~~~e~~e~~a~~l~~--l~p~---------~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 669 I---------------HRHVELGELAAQHIFE--LDPN---------SVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred H---------------cCChHHHHHHHHHHHh--hCCC---------CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 6 2345566666666554 4554 788899999999999999999999999999999
Q ss_pred CCCHH
Q 003725 772 EPNIV 776 (800)
Q Consensus 772 ~p~~~ 776 (800)
+++..
T Consensus 723 ~k~~g 727 (857)
T PLN03077 723 TVDPG 727 (857)
T ss_pred CCCCC
Confidence 88765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=590.89 Aligned_cols=543 Identities=17% Similarity=0.239 Sum_probs=483.8
Q ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHH
Q 003725 191 VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGF-SLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYST 269 (800)
Q Consensus 191 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (800)
.++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|.++++.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 45677888999999999999999999999998885 56788888999999999999999999998874 89999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 270 IIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN 349 (800)
Q Consensus 270 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (800)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 350 IIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKS--MGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (800)
+++|.++|++|...|+.|+ .+|+.++.+|++.|++++|.++|++|.. .++.||..+|+++|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999986 578999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKP 506 (800)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 506 (800)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.|++|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 003725 507 NVITHNMIIEGLCTSGRVKEARAFFDDDLK---EKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLT 583 (800)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 583 (800)
+..+|+.++.+|++.|++++|.++|+++.. .++...|+.||.+|++.|++++|.++|++|...|+.||..+|..++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999995544 23555699999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 663 (800)
+|++.|+.++|.+++++|.+.|+.||..+|+.++..|. +.+++|..+.+.+...+. .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHHH
Confidence 99999999999999999999999999999999987654 246666655544443210 111122344567
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchH
Q 003725 664 ACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCY 743 (800)
Q Consensus 664 A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 743 (800)
|..+|++|++.|+.||..||+.++.+++. .++...+..++++|...+..| +..+|
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~---------------~~~~~~~~~m~~~m~~~~~~~----------~~~~y 885 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQL---------------PHDATLRNRLIENLGISADSQ----------KQSNL 885 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcc---------------cccHHHHHHHHHHhccCCCCc----------chhhh
Confidence 99999999999999999999999955443 445667777777665544444 99999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 744 TVLIARLCYTNNLVDALIVFDEMIDRGLEPNIV 776 (800)
Q Consensus 744 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 776 (800)
++|++++++. .++|+.++++|.+.|+.|+..
T Consensus 886 ~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 886 STLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999998543 478999999999999999975
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-66 Score=581.47 Aligned_cols=543 Identities=17% Similarity=0.255 Sum_probs=496.8
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHH
Q 003725 104 HNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLF 183 (800)
Q Consensus 104 ~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 183 (800)
++...|..++..|++.|++++|..++++|..... ...+...+..++..|.+.|.+++|+.+|.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-----------------v~~~~v~~~~li~~~~~~g~~~eAl~lf~ 430 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-----------------LDMDKIYHAKFFKACKKQRAVKEAFRFAK 430 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-----------------CCchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4678899999999999999999999999877622 13355677889999999999999999999
Q ss_pred HccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 003725 184 QTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH 263 (800)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 263 (800)
.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 431 ~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 431 LIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred HcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 9975 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHH
Q 003725 264 GHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQ--LRVTPDKYVYSALI 341 (800)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li 341 (800)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++||
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 67899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVE 420 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (800)
.+|++.|++++|.++|+.|.+.|+.|+ .+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 421 EAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMK 500 (800)
Q Consensus 421 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (800)
+|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhc
Q 003725 501 KQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK---CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSES 577 (800)
Q Consensus 501 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 577 (800)
+.|+.||..+|+.++.+|++.|++++|.++|.++.... +...|+.++..+. +++++|.++.+.+..-+.
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~------ 818 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS------ 818 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc------
Confidence 99999999999999999999999999999999766654 3344888886554 246666665544432211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 578 CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657 (800)
Q Consensus 578 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 657 (800)
.......+..++|..+|++|++.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++|+++++
T Consensus 819 ----g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 819 ----GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred ----cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 1111223456789999999999999999999999999888999999999999999888889999999999999843
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH
Q 003725 658 LNCLREACNIFKDMKLRGIKPDVV 681 (800)
Q Consensus 658 ~g~~~~A~~~~~~m~~~g~~pd~~ 681 (800)
. .++|..+|++|...|+.|+..
T Consensus 895 ~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 895 Y--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred C--hHHHHHHHHHHHHcCCCCCcc
Confidence 2 478999999999999999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-60 Score=531.62 Aligned_cols=476 Identities=19% Similarity=0.300 Sum_probs=408.1
Q ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHH
Q 003725 191 VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVG-FSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYST 269 (800)
Q Consensus 191 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (800)
..+..+|+.++..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456688899999999999999999999987654 678888999999999988888889999988888888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 270 IIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN 349 (800)
Q Consensus 270 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (800)
++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 88888888888888888888864 57788888888888888888888888888888888888888888888877777
Q ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 350 IIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEM 429 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (800)
.+.+.+++..+. +.|..+|..+|++|+.+|++.|++++|.++|++|
T Consensus 240 ~~~~~~l~~~~~----------------------------------~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 240 ARAGQQLHCCVL----------------------------------KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHH----------------------------------HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 776666665554 4556678999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 430 EGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVI 509 (800)
Q Consensus 430 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 509 (800)
.. +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++|+..
T Consensus 286 ~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 286 PE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred CC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 65 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 003725 510 THNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEG 589 (800)
Q Consensus 510 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 589 (800)
+++.++.+|++.|++++|.++|+ .+..++..+|+.||.+|++.|+.++|+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~-~m~~~d~~t~n~lI~~y~~~G~~~~A~----------------------------- 411 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFD-RMPRKNLISWNALIAGYGNHGRGTKAV----------------------------- 411 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHH-hCCCCCeeeHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 99999999999999999999998 444444455555555555555555554
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 590 YNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR-HGLIPDLISYTMLIHGFCKLNCLREACNIF 668 (800)
Q Consensus 590 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 668 (800)
++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.|+++|++.|++++|.+++
T Consensus 412 ------~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 412 ------EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred ------HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 5555555556789999999999999999999999999999985 799999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHH
Q 003725 669 KDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIA 748 (800)
Q Consensus 669 ~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~ 748 (800)
++| ++.||..+|++|+.+|.. .|+.+.|...++++. ++.|+ +..+|+.|++
T Consensus 486 ~~~---~~~p~~~~~~~Ll~a~~~---------------~g~~~~a~~~~~~l~--~~~p~---------~~~~y~~L~~ 536 (697)
T PLN03081 486 RRA---PFKPTVNMWAALLTACRI---------------HKNLELGRLAAEKLY--GMGPE---------KLNNYVVLLN 536 (697)
T ss_pred HHC---CCCCCHHHHHHHHHHHHH---------------cCCcHHHHHHHHHHh--CCCCC---------CCcchHHHHH
Confidence 887 589999999999999988 455778888888776 34453 6789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 749 RLCYTNNLVDALIVFDEMIDRGLEP 773 (800)
Q Consensus 749 ~~~~~g~~~~A~~~~~~~~~~g~~p 773 (800)
+|++.|++++|.+++++|.+.|++.
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999999853
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=527.44 Aligned_cols=523 Identities=19% Similarity=0.295 Sum_probs=401.2
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 003725 103 RHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVL 182 (800)
Q Consensus 103 ~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 182 (800)
+.+..+|+.++..|++.|++++|..+++.|.... +..++..+|+.++.+|.+.++++.|.+++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~-----------------~~~~~~~t~~~ll~a~~~~~~~~~a~~l~ 146 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGC-----------------PFTLPASTYDALVEACIALKSIRCVKAVY 146 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456678888888888888888888888776441 12356678888888888888888888888
Q ss_pred HHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 003725 183 FQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTL 262 (800)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (800)
..|.+.|+.||..+||.++.+|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 147 ~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888888888888888888888888864 788888888888888888888888888888888888
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003725 263 HGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALIS 342 (800)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 342 (800)
+..+|+.++.++++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.||.
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~ 298 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLA 298 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888863 58888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (800)
+|++.|++++|.++|++|.+.|+.|+ .+++.++.+|++.|++++|.+++..+.+.|+.||..+|++|+.+|++.|++++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 88888888888888888888777777 67777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKK 501 (800)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (800)
|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+
T Consensus 379 A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 7777777753 466777777777777777777777777777777777777777777777777777777777777764
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 003725 502 -QGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCK 580 (800)
Q Consensus 502 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 580 (800)
.|+.|+..+|+.++.+|++.|++++|.++++
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~------------------------------------------------ 486 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIR------------------------------------------------ 486 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHH------------------------------------------------
Confidence 4677777777777777776666666665554
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003725 581 LLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNC 660 (800)
Q Consensus 581 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 660 (800)
+ .+..|+..+|++++.+|...|+++.|..+++.+.+.++. +..+|+.|+++|++.|+
T Consensus 487 -------------------~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 487 -------------------R---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGR 543 (697)
T ss_pred -------------------H---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCC
Confidence 1 134789999999999999999999999999998765443 57899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCch
Q 003725 661 LREACNIFKDMKLRGIKPDV-VLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPD 729 (800)
Q Consensus 661 ~~~A~~~~~~m~~~g~~pd~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 729 (800)
+++|.+++++|.+.|+.+.. .+|..+-.. .+..-.+. ...+...+-+.....+..+|.+.|..||
T Consensus 544 ~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~---~~~f~~~d-~~h~~~~~i~~~l~~l~~~~~~~gy~~~ 609 (697)
T PLN03081 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQ---DHSFFSGD-RLHPQSREIYQKLDELMKEISEYGYVAE 609 (697)
T ss_pred HHHHHHHHHHHHHcCCccCCCeeEEEECCe---EEEEccCC-CCCccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999986442 222111000 00000000 0112234446667778888888887774
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=376.06 Aligned_cols=681 Identities=14% Similarity=0.091 Sum_probs=538.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchH-------------
Q 003725 76 VVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFE------------- 142 (800)
Q Consensus 76 v~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~------------- 142 (800)
.+..++...|+++.|...|+.+.+.. +.+..++..++.++...|++++|...++.+++..+.....
T Consensus 198 ~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 33445555667777777777765432 2255666667777777777777777777766654432111
Q ss_pred ---HHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003725 143 ---VIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEE 219 (800)
Q Consensus 143 ---~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 219 (800)
....+....... +.....+..+...+...|++++|...|.++.+.. +.+...+..+...+.+.|++++|...++.
T Consensus 277 ~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 277 YEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred HHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 011111111111 1122344455666777888888888888877654 34566777788888888888888888888
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 003725 220 MKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNA 299 (800)
Q Consensus 220 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (800)
+.... +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +...
T Consensus 355 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 431 (899)
T TIGR02917 355 ALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELG 431 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-Ccch
Confidence 87654 3466778888888888888888888888887754 2356677778888888888888888888888764 3344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Q 003725 300 FAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLC 379 (800)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (800)
.....++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|...|+++.+..+.....+..+...+.
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 510 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 56667788888899999999999988865 34577888899999999999999999999998876655577888889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 380 QMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIG 459 (800)
Q Consensus 380 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (800)
..|++++|.+.++++....+. +..++..+...+.+.|+.++|..+++++...+. .+...+..++..|...|++++|..
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999877644 677888899999999999999999999987654 367788889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-
Q 003725 460 LFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK- 538 (800)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 538 (800)
+++.+.+.. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...+++.+...
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999998754 3477889999999999999999999999998774 5567788889999999999999999999665532
Q ss_pred -CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 539 -CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVI 617 (800)
Q Consensus 539 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 617 (800)
+...+..++..+...|++++|..+++.+.+.++. +...+..+...+...|++++|.+.++.+.... |+..++..++
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~ 743 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLH 743 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHH
Confidence 3445888999999999999999999999888754 66778888899999999999999999998875 4456777889
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCC
Q 003725 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRG 697 (800)
Q Consensus 618 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~ 697 (800)
.++...|++++|.+.++.+.+..+. +...+..++..|...|++++|.+.|+++.+.. +++...+..+...+..
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~----- 816 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE----- 816 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh-----
Confidence 9999999999999999999987655 88899999999999999999999999999863 4567777777777766
Q ss_pred CCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 698 SSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVI 777 (800)
Q Consensus 698 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 777 (800)
.++ .+|..+++++.+. .|+ +..++..++.+|...|++++|+++++++++.+. .+..+
T Consensus 817 ----------~~~-~~A~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~ 873 (899)
T TIGR02917 817 ----------LKD-PRALEYAEKALKL--APN---------IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAI 873 (899)
T ss_pred ----------cCc-HHHHHHHHHHHhh--CCC---------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHH
Confidence 333 5699999888764 343 778889999999999999999999999997653 38889
Q ss_pred HHHHHccccCCCCHHHHHhhhcC
Q 003725 778 YKALLCGCPTKKDVDKYLSLFAE 800 (800)
Q Consensus 778 ~~~l~~~~~~~g~~~~A~~~~~~ 800 (800)
+..++.++.+.|+.++|.+++++
T Consensus 874 ~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 874 RYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999998864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=366.41 Aligned_cols=678 Identities=13% Similarity=0.039 Sum_probs=331.5
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHH----------
Q 003725 77 VNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDL---------- 146 (800)
Q Consensus 77 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l---------- 146 (800)
+...+...++++.|...|+.+.+... .+...+..++.++...|++++|..++++++...+... ..+.+
T Consensus 131 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV-DALLLKGDLLLSLGN 208 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHhcCC
Confidence 34444445677777777777654322 2455666666677777777777777777666533211 11111
Q ss_pred -------HHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003725 147 -------FEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEE 219 (800)
Q Consensus 147 -------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 219 (800)
+..... ..+.+..++..++..+...|++++|...++.+.+... .+...+......+...|++++|...|++
T Consensus 209 ~~~A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (899)
T TIGR02917 209 IELALAAYRKAIA-LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQD 286 (899)
T ss_pred HHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 111100 1122344455555555555555555555555544321 1222222333334444555555555554
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 003725 220 MKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNA 299 (800)
Q Consensus 220 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 299 (800)
+.+.+. .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+.
T Consensus 287 ~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 363 (899)
T TIGR02917 287 ALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDP 363 (899)
T ss_pred HHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 443321 111222223333444445555555554444432 1223334444444445555555555555444432 3334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-----------
Q 003725 300 FAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN----------- 368 (800)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------- 368 (800)
..+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++.+....+...
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 444444555555555555555555544432 11333344444444444444444444444444333222
Q ss_pred -----------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 369 -----------------------YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKL 425 (800)
Q Consensus 369 -----------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 425 (800)
.++..+..++...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444444444444444444444444433222 233334444444444555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 426 FNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVK 505 (800)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 505 (800)
++.+...++. +..++..+...+.+.|++++|...+.++.+.+. .+...+..++..+...|++++|..+++.+.+.. +
T Consensus 522 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 5544443221 344444444455555555555555555444321 233444445555555555555555555554432 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 003725 506 PNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLT 583 (800)
Q Consensus 506 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 583 (800)
.+..++..+...+...|++++|...|++.+... ++..+..+...|.+.|++++|...|+++.+..+. +...+..++.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 677 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ 677 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 344455555555555555555555555333211 2223445555555555555555555555544322 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 663 (800)
.+...|+.++|.++++.+.+.. +.+...+..+...+...|++++|...++.+.+.++ +..++..++.++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHH
Confidence 5555555555555555555443 33444455555555555555555555555555432 22444455555555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchH
Q 003725 664 ACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCY 743 (800)
Q Consensus 664 A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 743 (800)
|.+.++++++.. +.+...+..+...|.. .|+.++|..+|+.+.+.. |+ +..++
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~---------------~g~~~~A~~~~~~~~~~~--p~---------~~~~~ 807 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLA---------------QKDYDKAIKHYRTVVKKA--PD---------NAVVL 807 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHH---------------CcCHHHHHHHHHHHHHhC--CC---------CHHHH
Confidence 666655555531 2233444444444443 345666777776666533 21 66667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccccCCCCHHHHHhhhc
Q 003725 744 TVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLFA 799 (800)
Q Consensus 744 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 799 (800)
+.++..+.+.|+ .+|+++++++.+. .+-+..++..+...+...|++++|.++|+
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777 6677777777643 12233445556666777777777777765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-27 Score=279.85 Aligned_cols=637 Identities=12% Similarity=0.025 Sum_probs=348.3
Q ss_pred HHHhccCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCc
Q 003725 79 KLDSFRKDPGAALTFFELLKARGFRHNV-HTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNV 157 (800)
Q Consensus 79 ~l~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 157 (800)
.+....++++.|.+.+..+... .|+. ..+..+++++.+.|+.++|...++++.+..|..... ..
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~-------------~~ 100 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAY-------------RS 100 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHH-------------HH
Confidence 4445567888888888877633 5566 556666777778888888888888887774432100 00
Q ss_pred hHH----------HHHHHHHHHHccCChHHHHHHHHHccCCCCccCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 003725 158 FYR----------VSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKF-TCNFFMNQLLKCGEVDMVLVLYEEMKSVGFS 226 (800)
Q Consensus 158 ~~~----------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 226 (800)
... ....+.+.+...|++++|++.|+.+.+.+ +++.. ............|+.++|...++++.+.. +
T Consensus 101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P 178 (1157)
T PRK11447 101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-P 178 (1157)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-C
Confidence 000 01233446777788888888888877654 23321 22222222234578888888888887653 3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--hhcH-----------------HHHHHHHHhcCChhHHHHHH
Q 003725 227 LNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH--GHNY-----------------STIIQGLCENGRLDVGYDLL 287 (800)
Q Consensus 227 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~-----------------~~li~~~~~~g~~~~a~~~~ 287 (800)
.+...+..+...+...|+.++|++.++++.+...... ...| ...+..+-.....+.|...+
T Consensus 179 ~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L 258 (1157)
T PRK11447 179 GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQL 258 (1157)
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHH
Confidence 3556677777777788888888888888765321000 0000 00011111111223333333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003725 288 LKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKT 367 (800)
Q Consensus 288 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 367 (800)
.........|... .......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..+..
T Consensus 259 ~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 259 AEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3333221112111 1223445556677777777777766643 2256666666777777777777777777766654432
Q ss_pred h--HHH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003725 368 N--YVV------------SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQ 433 (800)
Q Consensus 368 ~--~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (800)
. ..+ ......+.+.|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++.+..
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 111 11234455667777777777776665433 44555566666777777777777777766553
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 434 IVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHK--------PDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVK 505 (800)
Q Consensus 434 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 505 (800)
.. +...+..+...|. .++.++|..+++.+...... .....+..+...+...|++++|+..+++.++.. +
T Consensus 416 p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P 492 (1157)
T PRK11447 416 PG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-P 492 (1157)
T ss_pred CC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 22 3444555555543 34566666666554322100 001223444555666677777777777666653 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhc------
Q 003725 506 PNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSES------ 577 (800)
Q Consensus 506 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------ 577 (800)
.+...+..+...|.+.|++++|...+++.+... ++..+..+...+.+.++.++|+..++++......++...
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 345555666666667777777777776544322 222233344445566667777766666543322222111
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003725 578 ---CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHG 654 (800)
Q Consensus 578 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 654 (800)
+......+...|+.++|+++++. .+.+...+..+...+.+.|++++|...|+.+.+..+. +...+..++..
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~ 646 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEV 646 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 12234455566666666666651 1334445555666666666666666666666665444 55666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCC-chhhh
Q 003725 655 FCKLNCLREACNIFKDMKLRGIKPDVV-LYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEIS-PDVML 732 (800)
Q Consensus 655 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~ 732 (800)
|...|++++|++.++++.+. .|+.. .+..+...+.. .|+.++|.++++.+...... |.
T Consensus 647 ~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~---------------~g~~~eA~~~~~~al~~~~~~~~--- 706 (1157)
T PRK11447 647 DIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAA---------------LGDTAAAQRTFNRLIPQAKSQPP--- 706 (1157)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHh---------------CCCHHHHHHHHHHHhhhCccCCc---
Confidence 66666666666666665542 34322 22223333322 34466666666665542211 10
Q ss_pred ccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 733 GQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 733 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
...+...+..++..+...|++++|+..|++..
T Consensus 707 ---~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 707 ---SMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred ---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00012344455666666666666666666665
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-26 Score=272.36 Aligned_cols=614 Identities=12% Similarity=0.022 Sum_probs=430.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhc
Q 003725 75 EVVNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCY-CGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKE 153 (800)
Q Consensus 75 ~v~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (800)
.....+....|+.+.|...++.+.+.. |+...+......+.. .......... -.+... .....+....++.+...
T Consensus 66 ~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~-A~ll~~-~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 66 AARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQ-ARLLAT-TGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHH-HHHHHh-CCCHHHHHHHHHHHccC
Confidence 334566667899999999999987553 333233222222221 1111111111 111111 12234455666666443
Q ss_pred CCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH---
Q 003725 154 GSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQF--- 230 (800)
Q Consensus 154 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--- 230 (800)
..+................|++++|+..|+++.+.. +.+...+..+...+...|+.++|+..++++..... .+..
T Consensus 142 ~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~-~~~~aa~ 219 (1157)
T PRK11447 142 APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPA-GRDAAAQ 219 (1157)
T ss_pred CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-chHHHHH
Confidence 322211111111222234699999999999999875 44677889999999999999999999999976421 0111
Q ss_pred h-----------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003725 231 T-----------------YDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN 293 (800)
Q Consensus 231 ~-----------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 293 (800)
. +...+..+-.......|...++.+......|... .......+...|++++|...|++..+.
T Consensus 220 ~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 220 LWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 1111111112223445555665554432233322 124456678899999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHH
Q 003725 294 GIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTP-DKYVY------------SALISGYCKCGNIIKALSLHGEM 360 (800)
Q Consensus 294 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~------------~~li~~~~~~g~~~~A~~~~~~~ 360 (800)
. +.+..++..+...+.+.|++++|+..|++..+..... +...+ ......+.+.|++++|+..|+++
T Consensus 299 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 299 N-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4 5578899999999999999999999999998764221 11111 12245678899999999999999
Q ss_pred HHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----
Q 003725 361 TSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP---- 436 (800)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---- 436 (800)
....+....++..+..++...|++++|++.|+++.+..+. +...+..+...|. .++.++|..+++.+.......
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 9987666678888999999999999999999999987654 4556666777764 467899999988765432110
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 437 ----DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHN 512 (800)
Q Consensus 437 ----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 512 (800)
....+..+...+...|++++|+..|++.++..+. +...+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~ 533 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVY 533 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 0223455677888999999999999999987543 56778889999999999999999999998764 44566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccC-ccC------------HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHH
Q 003725 513 MIIEGLCTSGRVKEARAFFDDDLKEKC-LEN------------YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCC 579 (800)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 579 (800)
.+...+...++.++|...++. +.... ... +..+...+...|+.++|..+++. ...+...+.
T Consensus 534 a~al~l~~~~~~~~Al~~l~~-l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~ 607 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNT-LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHh-CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHH
Confidence 666677889999999999984 33221 111 23456778899999999999872 223556778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003725 580 KLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659 (800)
Q Consensus 580 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 659 (800)
.+...+...|+.++|++.++++++.. +.+...+..++..|...|++++|.+.++.+.+..+. +...+..+..++...|
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCC
Confidence 88899999999999999999999875 456778889999999999999999999988875443 6677888889999999
Q ss_pred CHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHH
Q 003725 660 CLREACNIFKDMKLRGIK-PD----VVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKE 723 (800)
Q Consensus 660 ~~~~A~~~~~~m~~~g~~-pd----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 723 (800)
++++|.++|++++...-. |. ...+..+...+ ...|+.++|.+.|+....
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~---------------~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE---------------AQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHh
Confidence 999999999999874211 11 12222333333 359999999999998864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-22 Score=221.79 Aligned_cols=217 Identities=12% Similarity=0.044 Sum_probs=160.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCC
Q 003725 77 VNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSN 156 (800)
Q Consensus 77 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (800)
...+....|+++.|+..|+.+.+.... +..++..+++++...|+.++|+..+++.++..+.
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~------------------ 110 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG------------------ 110 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc------------------
Confidence 345556669999999999999754323 5889999999999999999999999999888442
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHH--------HHHcCChhHHHHHHHHHHhCCCCCC
Q 003725 157 VFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQ--------LLKCGEVDMVLVLYEEMKSVGFSLN 228 (800)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~m~~~~~~~~ 228 (800)
+...+..+ ...+++++|..+|+++.... +-+..++..+... |.+.++...++. .......|+
T Consensus 111 -n~~~~~~L----a~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~ 180 (987)
T PRK09782 111 -DARLERSL----AAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPE 180 (987)
T ss_pred -cHHHHHHH----HHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCC
Confidence 22223333 22289999999999999875 3355666666665 666655555554 333223345
Q ss_pred HHhHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 229 QFTYDIV-IKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE-NGRLDVGYDLLLKWSENGIPLNAFAYTAVI 306 (800)
Q Consensus 229 ~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 306 (800)
..+.... .+.|.+.|++++|+++++++.+.+. .+..-...|...|.. .++ +.+..+++. ....+...+..++
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 5555555 8999999999999999999999873 355557777778887 366 777777553 2335788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 003725 307 REFCQNSRLVEAESVLLRMKQL 328 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~ 328 (800)
..|.+.|+.++|.++++++...
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCccc
Confidence 9999999999999999998754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-22 Score=222.66 Aligned_cols=217 Identities=11% Similarity=-0.054 Sum_probs=163.9
Q ss_pred HHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCH
Q 003725 115 ILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSK 194 (800)
Q Consensus 115 ~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 194 (800)
.+...|++++|...|+++++..|. +..++..|...|...|++++|+..+++..+.+ +-|.
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~-------------------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~ 112 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPD-------------------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDA 112 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccH
Confidence 334469999999999999988554 35577899999999999999999999999875 2345
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCcChhc
Q 003725 195 FTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKA--------LCKLARFEEAFDVLNEMNKAGVTLHGHN 266 (800)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 266 (800)
..+..+.. + +++++|..+++++.... +-+..++..+... |.+. ++|.+.++ .......|+..+
T Consensus 113 ~~~~~La~-i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~v 183 (987)
T PRK09782 113 RLERSLAA-I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKT 183 (987)
T ss_pred HHHHHHHH-h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHH
Confidence 55554422 2 99999999999998864 2345555555554 5554 66666665 333333444555
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003725 267 YSTI-IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ-NSRLVEAESVLLRMKQLRVTPDKYVYSALISGY 344 (800)
Q Consensus 267 ~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 344 (800)
.... ...|.+.|++++|++++.++.+.+ +.+......+...|.. .++ +++..+++. ....+...+..++..|
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~y 257 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATAL 257 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHH
Confidence 5555 899999999999999999999986 5566667778888887 466 888888654 2235888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 003725 345 CKCGNIIKALSLHGEMTSIGIK 366 (800)
Q Consensus 345 ~~~g~~~~A~~~~~~~~~~~~~ 366 (800)
.+.|+.++|..+++++......
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccC
Confidence 9999999999999998765443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-20 Score=195.47 Aligned_cols=644 Identities=12% Similarity=0.038 Sum_probs=403.6
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHcc-----------CC
Q 003725 106 VHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSE-----------RM 174 (800)
Q Consensus 106 ~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~ 174 (800)
..+|..++.-|...|..+++..+++..+......--++- .....+++.|...+... ..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~-----------~~~~~a~~~laay~s~~a~kek~~~~k~e~ 109 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVK-----------SDQMKALDILAAYYSQLAMKEKKKDEKDEL 109 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchH-----------HHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 468999999999999999999999987632111100000 00111222222222111 12
Q ss_pred hHHHHHHHHHccCCCCc-cCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 003725 175 FDQALNVLFQTDRPGFV-WSKFTCNFFMNQLLKCGE--VDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDV 251 (800)
Q Consensus 175 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 251 (800)
+..|...|...-+.... +........ .|...|. ++.|...|....+.. ++|+-.+---.......|++..|+.+
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~y 186 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKY 186 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHH
Confidence 23344444332221111 111111111 1222333 578888888877653 34444433333333457888899999
Q ss_pred HHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhC
Q 003725 252 LNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQN---SRLVEAESVLLRMKQL 328 (800)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 328 (800)
|..+...+..--+.....+..++.+.|+.+.|+..|.+..+.+ |.++.++..|...-... ..+..+..++...-..
T Consensus 187 yk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 187 YKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE 265 (1018)
T ss_pred HHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh
Confidence 9887664332222333445566778888888888888888875 33444444444333332 3355666666665544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 329 RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVC 405 (800)
Q Consensus 329 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 405 (800)
+ .-++...+.|...|.-.|+++.+..+...+........ ..+..+.+++...|++++|...|.+..+.....-...
T Consensus 266 n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 266 N-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred c-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 3 24667777888888888899988888888876553322 5678888888889999999888877766543322334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRG----KLVDAIGLFKKMREMGHKPDIKAYNVLAR 481 (800)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (800)
+--|...|.+.|+++.+...|+.+....+. +..+...|...|...+ ..+.|..++.+..+.- ..|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 445778888888999998888888776332 5566666666666654 4567777777776653 236677777776
Q ss_pred HHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCccC--------HHH
Q 003725 482 GLAQYGSVRDALDCLKYMK----KQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKE----KCLEN--------YSA 545 (800)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--------~~~ 545 (800)
.+... +...++.++..+. ..+-++.+...+.+...+...|.++.|...|.+.... .+.+. -..
T Consensus 423 l~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 66544 3333466665544 4455677788888888888888988888888865443 11111 223
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 546 MVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGK 625 (800)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 625 (800)
+...+-..++.+.|.+.|..+....+. -...+..++......+...+|...+...+..+ ..++..+..+...+.+...
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 455556677888888888888877543 22233333323334467788888888887654 4555566666777888888
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHh
Q 003725 626 IKWAHQVFDFLTRH-GLIPDLISYTMLIHGFCK------------LNCLREACNIFKDMKLRGIKPD-VVLYTILCDAYS 691 (800)
Q Consensus 626 ~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~ 691 (800)
+..|.+-|....+. ...+|..+.-.|.+.|.+ .+..++|+++|.+.+.. .|- ...-+-+-..++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhh
Confidence 88888877766642 222566666677775542 34577788888888764 333 222222222222
Q ss_pred ccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 692 KINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGL 771 (800)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 771 (800)
.+|.+.+|..+|....+.... +..+|-.++.+|...|.|-.|+++|+.....-.
T Consensus 658 ---------------~kg~~~~A~dIFsqVrEa~~~-----------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 658 ---------------EKGRFSEARDIFSQVREATSD-----------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred ---------------hccCchHHHHHHHHHHHHHhh-----------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888888888764332 566788888888888888888888888765533
Q ss_pred -CCCHHHHHHHHccccCCCCHHHHHhhh
Q 003725 772 -EPNIVIYKALLCGCPTKKDVDKYLSLF 798 (800)
Q Consensus 772 -~p~~~~~~~l~~~~~~~g~~~~A~~~~ 798 (800)
.-+..+...|..++...|.+.+|.+.+
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445556677888888888888887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-20 Score=190.26 Aligned_cols=571 Identities=12% Similarity=0.076 Sum_probs=421.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHH
Q 003725 87 PGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMV 166 (800)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll 166 (800)
.+.|...|..+.+.. ++|...+..-+++.-..|++..|..+|..++...+....+ +...+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD------------------~rIgig 206 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD------------------VRIGIG 206 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC------------------ccchhh
Confidence 478999999987542 3466666666677777899999999999988775543222 223344
Q ss_pred HHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 003725 167 KAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCG---EVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLA 243 (800)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 243 (800)
.++.+.|+.+.|+..|.+..+.+. .++.++-.|...-.... .+..+..++...-... ..|+...+.|.+.|.-.|
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKK 284 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcc
Confidence 666788999999999999998763 34444444443333333 3455666666654332 357788899999999999
Q ss_pred ChhHHHHHHHHHHhCCCC--cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003725 244 RFEEAFDVLNEMNKAGVT--LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESV 321 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 321 (800)
++..+..+.+.+...... .-...|-.+.++|-..|++++|..+|.+..+..-.--...+..+.+.+.+.|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 999999999988774311 233568889999999999999999999988864222255667889999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 003725 322 LLRMKQLRVTPDKYVYSALISGYCKCG----NIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFK-- 395 (800)
Q Consensus 322 ~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 395 (800)
|+.+.+.. +.+..+...|...|...+ ..++|..++.+..+..+.....|..+...+....-+.. +..|..+.
T Consensus 365 fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~ 442 (1018)
T KOG2002|consen 365 FEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDI 442 (1018)
T ss_pred HHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHH
Confidence 99998763 345677888888887775 67888888888888765555778777777766655544 66665543
Q ss_pred --HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 396 --SMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGR---QIVPDV------ANYTTVIDGYILRGKLVDAIGLFKKM 464 (800)
Q Consensus 396 --~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~ 464 (800)
..+-.+.+...|.+...+...|++++|...|+..... ...+|. .+--.+...+-..++.+.|.+.|..+
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4455577888999999999999999999999998765 122232 23334556666778999999999999
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--cc
Q 003725 465 REMGHKPD-IKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--LE 541 (800)
Q Consensus 465 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~ 541 (800)
.+. .|. +..|..++......+...+|...++...... ..++..+..+...+.+...+..|.+-|+..+.... .+
T Consensus 523 lke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 523 LKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 886 344 3456666544445678889999999988764 55666777778788888888888887774444332 23
Q ss_pred CHH--HHHHHHH------------ccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003725 542 NYS--AMVDGYC------------EANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAK 607 (800)
Q Consensus 542 ~~~--~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 607 (800)
+|. +|.+.|. ..+.+++|+.+|.+++..++. |...-+-+...++..|++++|..+|.+..+...
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~- 677 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS- 677 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-
Confidence 343 3333332 234578999999999988766 677778888889999999999999999988753
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003725 608 PSKTTYDKVIGALCLAGKIKWAHQVFDFLTR-HGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTI 685 (800)
Q Consensus 608 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 685 (800)
....+|..+.++|..+|++..|.++|+...+ .....+......|..++.+.|.+.+|.+.....+.....-..+-||.
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 3455788899999999999999999998774 55566888899999999999999999999888886532223344443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-21 Score=193.18 Aligned_cols=436 Identities=17% Similarity=0.111 Sum_probs=282.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh
Q 003725 197 CNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE 276 (800)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 276 (800)
...|.+-..+.|+++.|.+.-...-..+ +.+....-.+-..+.+..+++....--....+.. ..-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4566677777888888877665543332 2233344444455666666666555544444433 2345677778888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHH
Q 003725 277 NGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYS-ALISGYCKCGNIIKALS 355 (800)
Q Consensus 277 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~ 355 (800)
.|+++.|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+. .|+..... -+....-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 888888888888877763 445677777888888888888888887777764 45544432 33444555677777777
Q ss_pred HHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003725 356 LHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIV 435 (800)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (800)
.+.+.++..+....+|+.+...+-..|+.-.|+..|++..+.++.. ...|-.|...|...+.+++|+..+.+.....+.
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 7777776655444677777777777777777777777777665442 445666777777777777777777776654221
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003725 436 PDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPD-IKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMI 514 (800)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 514 (800)
....+..+...|..+|..+-|+..|++.++. .|+ ...|+.|..++-..|+..+|.+.+.+.+... +..+...+.|
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 3456666666777777777777777777665 343 4567777777777777777777777776653 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
...|...|.+++|..+|...+. -.+. -...++.+...|-+.|+.++|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--------------------------------v~p~-~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--------------------------------VFPE-FAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--------------------------------hChh-hhhhhhhHHHHHHhcccHHHH
Confidence 6667777777777666663333 2111 122344455555555555555
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 595 FKLLDTMLKLDAKPS-KTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
+..+++.++- .|+ ...|+.+...|-..|+.+.|.+.+.++...++. =....+.|...|-..|+..+|+.-|++.++
T Consensus 408 i~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 408 IMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 5555555542 343 335677777788888888888888877775443 356677788888888888888888888875
Q ss_pred cCCCCCH
Q 003725 674 RGIKPDV 680 (800)
Q Consensus 674 ~g~~pd~ 680 (800)
++||.
T Consensus 485 --lkPDf 489 (966)
T KOG4626|consen 485 --LKPDF 489 (966)
T ss_pred --cCCCC
Confidence 56663
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-22 Score=194.13 Aligned_cols=432 Identities=13% Similarity=0.074 Sum_probs=331.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 003725 161 VSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC 240 (800)
Q Consensus 161 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 240 (800)
....|..-..+.|++.+|.+.-...-..+ +.+....-.+-..+....+.+.....-....+. .+.-..+|..+.+.+-
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 35678888889999999999877666554 334444445556677777777766655444443 2345679999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 320 (800)
..|++++|+.+|+.+++.. +.....|..+..++...|+.+.|.+.|.+.++.+ |...-..+.+...+-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999999875 2367899999999999999999999999999873 3233344556666677999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 321 VLLRMKQLRVTP-DKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGI 399 (800)
Q Consensus 321 ~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 399 (800)
.|.+..+. .| =.+.|+.|...+-.+|+...|+..|++..+.++....+|..+...|...+.+++|+..|.+.....+
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 99888875 33 3567899999999999999999999999987666669999999999999999999999999887654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003725 400 FLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVL 479 (800)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (800)
. ....+..+...|...|.+|.|+..+++..+..+. -...|+.|..++-..|++.+|...|.+.+..... ...+.+.|
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NL 360 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNL 360 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 4 5667788888899999999999999999987433 4689999999999999999999999999887432 56789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--ccCHHHHHHHHHccCCHH
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--LENYSAMVDGYCEANHLE 557 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 557 (800)
...+...|.+++|..+|....+-. +.-....+.|...|-..|++++|+..+++.+.-+. .+.|+.+...|...|+.+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999999988752 33356677788888888888888888886555332 233666666666666666
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003725 558 EAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLK 603 (800)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 603 (800)
.|+..+.+.+..++. -...++.+...+-..|++.+|+.-+++.++
T Consensus 440 ~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 666666666655432 223344444444444444444444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-17 Score=169.08 Aligned_cols=653 Identities=11% Similarity=0.060 Sum_probs=433.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHc
Q 003725 106 VHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQT 185 (800)
Q Consensus 106 ~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 185 (800)
.......+..+-..|+.++|..++.+++++.+. +...|..|...|-++|+.+.+...+-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-------------------~~~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-------------------NPIAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-------------------chhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344445555666679999999999999998443 4567899999999999999999887666
Q ss_pred cCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChh
Q 003725 186 DRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGH 265 (800)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (800)
-..+ +.|...|..+.....+.|.++.|.-.|.+..+.. +++...+---+..|-+.|+...|.+-|.++.....+.+..
T Consensus 200 AHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e 277 (895)
T KOG2076|consen 200 AHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE 277 (895)
T ss_pred HhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH
Confidence 5554 4567899999999999999999999999999875 4555555566778889999999999999998865322222
Q ss_pred ----cHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---------
Q 003725 266 ----NYSTIIQGLCENGRLDVGYDLLLKWSENG-IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVT--------- 331 (800)
Q Consensus 266 ----~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------- 331 (800)
.-...++.+...++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+......
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 22334566777788899998888887732 2345567888899999999999999888887762212
Q ss_pred ------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHH
Q 003725 332 ------------------PDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKK 390 (800)
Q Consensus 332 ------------------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~ 390 (800)
++.... -++-++......+....+.......+..+. ..+..+..++.+.|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 222221 122233334444444444445555554444 6778899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 003725 391 FKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE---- 466 (800)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 466 (800)
|..+......-+...|-.+..+|...|.+++|.+.|+.++...+. +...-..|...+.+.|+.++|.+.+..+..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 999998876667888999999999999999999999999876433 455666777788899999999999988642
Q ss_pred ----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHh
Q 003725 467 ----MGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQG----------------------VKPNVITHNMIIEGLCT 520 (800)
Q Consensus 467 ----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~ 520 (800)
.+..|+..........+.+.|+.++-+.....|+... .+-.......++.+-.+
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k 595 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK 595 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence 2334555555666677778888877666555554321 11222233344444444
Q ss_pred cCCHHHHHHHHHHH-----Hh--ccCccC----HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-Chh----cHHHHHHH
Q 003725 521 SGRVKEARAFFDDD-----LK--EKCLEN----YSAMVDGYCEANHLEEAFQFFMTLSQRGFLM-RSE----SCCKLLTN 584 (800)
Q Consensus 521 ~g~~~~a~~~~~~~-----~~--~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~----~~~~l~~~ 584 (800)
.++.....+-.... .. .-.... +..++..+++.+++++|+.+...+......- +.. .-...+.+
T Consensus 596 ~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~ 675 (895)
T KOG2076|consen 596 ATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKA 675 (895)
T ss_pred cCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHH
Confidence 44432222221110 00 111111 3556778899999999999998888765321 222 22345567
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003725 585 LLIEGYNNKAFKLLDTMLKL-DAK--P-SKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNC 660 (800)
Q Consensus 585 ~~~~g~~~~A~~~~~~~~~~-~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 660 (800)
.+..+++..|.+.++.|+.. +.. | -...|+...+...+.|+-.-=.+.+..+......-+...+....+.....+.
T Consensus 676 s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s 755 (895)
T KOG2076|consen 676 SLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNAS 755 (895)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccc
Confidence 78889999999999999865 111 1 1224554555555555544444444444443333234444444555678899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCC
Q 003725 661 LREACNIFKDMKLRGIKPDVVLYTILCDAY-SKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPD 739 (800)
Q Consensus 661 ~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~ 739 (800)
+.-|+..+-+... ..||....+..+..- .+....+ .+....-.+.++..++..-.+....-+ .
T Consensus 756 ~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr-----~v~~Rh~~i~qG~afL~RY~~lR~~~~---------~ 819 (895)
T KOG2076|consen 756 FKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQR-----RVSNRHAQIAQGFAFLKRYKELRRCEE---------K 819 (895)
T ss_pred hHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHhhccHH---------H
Confidence 9999998887776 478865555443221 1100000 000111224445555544443211101 4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHccccCCCCHHHHHhhhcC
Q 003725 740 TVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN--------------IVIYKALLCGCPTKKDVDKYLSLFAE 800 (800)
Q Consensus 740 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 800 (800)
.+++-.++++|-..|-..-|+.+|++.+ ++.|- ...|| |.-.|.++|++..|..++++
T Consensus 820 QEa~YNigRayh~~gl~~LA~~YYekvL--~~~p~~~~~~~~d~~dLrkeAA~N-L~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 820 QEAFYNIGRAYHQIGLVHLAVSYYEKVL--EVSPKDVTDPKEDNYDLRKEAAYN-LHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHh--CCCccccccccCCcccHHHHHHhh-hhhhhccCCcHHHHHHHHHh
Confidence 5567789999999999999999999999 45432 22455 44589999999999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-18 Score=188.81 Aligned_cols=256 Identities=15% Similarity=0.101 Sum_probs=193.8
Q ss_pred cCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHH
Q 003725 486 YGSVRDALDCLKYMKKQG-V-KPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQ 561 (800)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 561 (800)
.+++++|...++...+.+ . +.....+..+...+...|++++|...+++.+... ....|..+...+...|++++|..
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 466778888888777654 1 2234556667777777888888888888655432 23346777778888888888888
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003725 562 FFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGL 641 (800)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 641 (800)
.|+++.+.++. +...+..+...+...|++++|+..+++.++.. +.+...+..+..++.+.|++++|...|+...+..+
T Consensus 387 ~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 88888877544 56788888888999999999999999998875 44567788888999999999999999999988644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHH---HHH-HHhccCCCCCCCCCCcccCchhHHHHHH
Q 003725 642 IPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV-VLYTI---LCD-AYSKINKRGSSSSPHTLRSNEEVVDASD 716 (800)
Q Consensus 642 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~---ll~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 716 (800)
. +...|+.+..++...|++++|++.|++.++. .|+. .++.. ++. +... ....+++++|.+
T Consensus 465 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~------------~~~~~~~~eA~~ 529 (615)
T TIGR00990 465 E-APDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALAL------------FQWKQDFIEAEN 529 (615)
T ss_pred C-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHH------------HHHhhhHHHHHH
Confidence 4 6888999999999999999999999999874 4431 11111 111 1110 012467899999
Q ss_pred HHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 717 FLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDR 769 (800)
Q Consensus 717 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 769 (800)
++++..... |+ +..++..++.++...|++++|+++|++..+.
T Consensus 530 ~~~kAl~l~--p~---------~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 530 LCEKALIID--PE---------CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhcC--CC---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999887643 43 6678999999999999999999999999754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=191.55 Aligned_cols=301 Identities=14% Similarity=0.109 Sum_probs=198.3
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC---hhcHHHHHHHHHhcCC
Q 003725 203 QLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH---GHNYSTIIQGLCENGR 279 (800)
Q Consensus 203 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 279 (800)
.+...|+++.|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4455666666666666666543 23444666666666666677777766666665321111 2345666666666777
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 003725 280 LDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALS 355 (800)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~ 355 (800)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777666542 445566667777777777777777777776665422221 234455666667777777777
Q ss_pred HHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003725 356 LHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIV 435 (800)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (800)
.++++.+..+.....+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|++++|...++.+.+..
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 777776654433355666667777777777777777777665433334566777888888888888888888877653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 436 PDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ---YGSVRDALDCLKYMKKQGVKPNVI 509 (800)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 509 (800)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++.|.+.++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45556677778888888888888888887765 5777777777776664 457788888888888776666654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-17 Score=185.28 Aligned_cols=254 Identities=12% Similarity=0.028 Sum_probs=156.3
Q ss_pred CCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 417 GEVEEAVKLFNEMEGRQ-IVP-DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALD 494 (800)
Q Consensus 417 g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 494 (800)
+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..|++.++.... +...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666665442 112 2344555555566666666666666666554211 24455555566666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 003725 495 CLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFL 572 (800)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 572 (800)
.++.+.+.. +.+..++..+...+...|++++|...|++.+... +...+..+...+.+.|++++|+..|++.....+.
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 666665543 3345556666666666666666666666444322 2222555566666667777777777766655432
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003725 573 MRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKT------TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLI 646 (800)
Q Consensus 573 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 646 (800)
+...+..+...+...|++++|++.+++.++.....+.. .++..+..+...|++++|..+++++.+.++. +..
T Consensus 466 -~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~ 543 (615)
T TIGR00990 466 -APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDI 543 (615)
T ss_pred -ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHH
Confidence 45566677777777777777777777777653221111 1122222334468999999999988876544 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
.+..++..+.+.|++++|++.|++..+.
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7888899999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-19 Score=186.54 Aligned_cols=302 Identities=12% Similarity=0.084 Sum_probs=253.5
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhc
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLN---QFTYDIVIKALCKL 242 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 242 (800)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567799999999999999875 34677899999999999999999999999987532221 24678889999999
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLN----AFAYTAVIREFCQNSRLVEA 318 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 318 (800)
|++++|.++|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998764 35678899999999999999999999999988753322 22456778888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 319 ESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSM 397 (800)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 397 (800)
...|+++.+.. +.+...+..++..+.+.|++++|.++++++...++... .++..++.++...|+.++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 33566888899999999999999999999998765544 67788999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 003725 398 GIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYIL---RGKLVDAIGLFKKMREMGHKPDIK 474 (800)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 474 (800)
. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5 44556688999999999999999999998876 5788899988887775 568999999999999877666554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-17 Score=179.44 Aligned_cols=331 Identities=14% Similarity=0.074 Sum_probs=232.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 003725 163 DAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKL 242 (800)
Q Consensus 163 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 242 (800)
..++..+.+.|++++|+.+++....... -+..++..++.+....|+++.|...|+++.... +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 4456677778888888888888776643 345555666667777888888888888887753 34556777777888888
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (800)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888887753 2356677778888888888888888888776653 2333344333 3467788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 003725 323 LRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSE----AIKKFKEFKSMG 398 (800)
Q Consensus 323 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~ 398 (800)
+.+.+....++...+..+...+...|++++|...++++....+.....+..+...+...|++++ |...+++..+..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 8877654333444555556777788888888888888877665555667777777777887775 677777777665
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 003725 399 IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI-KAYN 477 (800)
Q Consensus 399 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 477 (800)
+. +...+..+...+...|++++|...+++.....+. +...+..+...+.+.|++++|...|+++...+ |+. ..+.
T Consensus 281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 43 5667777777777778888888887777765433 45566667777777788888887777777653 333 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 478 VLARGLAQYGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (800)
.+..++...|+.++|...|+...+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455667777777787777777665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-16 Score=178.81 Aligned_cols=422 Identities=11% Similarity=0.009 Sum_probs=263.1
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 227 LNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVI 306 (800)
Q Consensus 227 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 306 (800)
.+..-..-.+......|+.++|++++....... ..+...+..+...+...|++++|.+++++..+.. |.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344445555666667788888888887776522 3344567777777888888888888888877763 45566677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHH
Q 003725 307 REFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSE 386 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 386 (800)
..+...|++++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+..+.....+..+..++...+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 77788888888888888877652 23444 77777777788888888888888877766655555556666667777777
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHH
Q 003725 387 AIKKFKEFKSMGIFLDQ------VCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKL---VDA 457 (800)
Q Consensus 387 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A 457 (800)
|++.++.+.. .|+. .....++......+ ....+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHH
Confidence 7776665443 1210 00011111111000 0111122 445
Q ss_pred HHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 458 IGLFKKMREM-GHKPDIK-AY----NVLARGLAQYGSVRDALDCLKYMKKQGVK-PNVITHNMIIEGLCTSGRVKEARAF 530 (800)
Q Consensus 458 ~~~~~~~~~~-~~~p~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~ 530 (800)
+..++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence 5555555432 1111111 00 01122334445666666666665554321 211 112234455566666666666
Q ss_pred HHHHHhccCc------cCHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCCh---hcHHHHHHHHHhcCC
Q 003725 531 FDDDLKEKCL------ENYSAMVDGYCEANHLEEAFQFFMTLSQRGF-----------LMRS---ESCCKLLTNLLIEGY 590 (800)
Q Consensus 531 ~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~ 590 (800)
|++.+..... .....+..++.+.|++++|..+++++....+ .|+. ..+..+...+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 6643332211 1133444455666666666666666665432 1222 234566778888999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 591 NNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKD 670 (800)
Q Consensus 591 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 670 (800)
.++|++.+++++... +.+...+..++..+...|++++|++.++++.+..+. +...+..++..+.+.|++++|..++++
T Consensus 375 ~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 375 LPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998765 556778888999999999999999999999986544 577777888889999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHH
Q 003725 671 MKLRGIKPDVVLYTILCDAY 690 (800)
Q Consensus 671 m~~~g~~pd~~~~~~ll~~~ 690 (800)
+++. .|+......+-..+
T Consensus 453 ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 453 VVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHh--CCCCHHHHHHHHHH
Confidence 9984 78776665555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-16 Score=176.37 Aligned_cols=358 Identities=14% Similarity=0.069 Sum_probs=231.7
Q ss_pred HccCChHHHHHHHHHccCCCC--ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH
Q 003725 170 CSERMFDQALNVLFQTDRPGF--VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEE 247 (800)
Q Consensus 170 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 247 (800)
.++.+++.---+|....+.-- .-+..-...++..+.+.|+.+.|+.+++...... +-+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 345666665555555443210 1112223345566777788888888887777653 2334455555566667788888
Q ss_pred HHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003725 248 AFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQ 327 (800)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (800)
|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 888888877754 2345667777777778888888888888777753 44566777777778888888888887777765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003725 328 LRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCY 406 (800)
Q Consensus 328 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 406 (800)
.... +...+..+ ..+...|++++|...++.+......++ .....+..++.+.|++++|+..++++....+. +...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 4322 22233222 336677888888887777766544333 34444556677777777777777777766543 45666
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003725 407 NVIMDALCKLGEVEE----AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARG 482 (800)
Q Consensus 407 ~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 482 (800)
..+...+...|++++ |...+++..+..+. +...+..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 667777777777764 67777777765433 5667777777777777777777777777765432 45556667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003725 483 LAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK 536 (800)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (800)
+.+.|++++|...++.+.+.+ +.+...+..+..++...|+.++|...|++.+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777777653 22223333345567777777777777775444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-16 Score=175.91 Aligned_cols=432 Identities=11% Similarity=0.041 Sum_probs=269.4
Q ss_pred HHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003725 179 LNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKA 258 (800)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 258 (800)
+..+++ .+.+ ..+..-..-.+.+....|+.++|+.++.+..... +.+...+..+...+.+.|++++|.++|++.++.
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555 2222 3455555666788899999999999999997632 355667899999999999999999999999886
Q ss_pred CCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003725 259 GVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYS 338 (800)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 338 (800)
. +.+...+..++..+...|++++|...++++.+.. +.+.. +..+...+...|+.++|...++++.+... .+...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 4 3356778888899999999999999999999873 55667 88899999999999999999999998742 3556667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-------HHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-CCCCC
Q 003725 339 ALISGYCKCGNIIKALSLHGEMTSIGIKTNY-------VVSVILKCLCQ-----MGKT---SEAIKKFKEFKSM-GIFLD 402 (800)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~ 402 (800)
.+...+...|..++|++.++.... .|+. .....+..... .+++ ++|++.++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 788888899999999999987664 2210 11112222211 1122 4455555555533 11111
Q ss_pred HH-HHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CH
Q 003725 403 QV-CYN----VIMDALCKLGEVEEAVKLFNEMEGRQIV-PDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP---DI 473 (800)
Q Consensus 403 ~~-~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~ 473 (800)
.. .+. ..+.++...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 111 1122334445556666666655554321 221 11113445555555666666555554432110 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHcc
Q 003725 474 KAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEA 553 (800)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (800)
.....+..++...|++++|..+++.+.+.. ++....+.. .....+. .....+..+...+...
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~------~~~~p~~-----------~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGS------PTSIPND-----------DWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCC------CCCCCCc-----------hHHHHHHHHHHHHHHc
Confidence 233344444555555555555555555431 111000000 0000000 0000123455566677
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 554 NHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVF 633 (800)
Q Consensus 554 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 633 (800)
|++++|+++++++....+. +...+..+...+...|++++|++.++++++.. +.+...+...+..+...|++++|...+
T Consensus 373 g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7777777777777766544 46677777778888888888888888887765 334555666666788888899999988
Q ss_pred HHHHHCCC
Q 003725 634 DFLTRHGL 641 (800)
Q Consensus 634 ~~~~~~~~ 641 (800)
+.+++..+
T Consensus 451 ~~ll~~~P 458 (765)
T PRK10049 451 DDVVAREP 458 (765)
T ss_pred HHHHHhCC
Confidence 88887533
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-13 Score=134.17 Aligned_cols=604 Identities=11% Similarity=-0.015 Sum_probs=282.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHH
Q 003725 86 DPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAM 165 (800)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 165 (800)
+..+|..++..+.+.+.. ++..|-+-++.=-..|.+..|..+..+-.+..+. +.++|..-
T Consensus 266 DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr-------------------SeDvWLea 325 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPR-------------------SEDVWLEA 325 (913)
T ss_pred HHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc-------------------hHHHHHHH
Confidence 556788888887766544 4556666666666677888887777665554221 22222222
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARF 245 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 245 (800)
++ ..-.+.|..+.-...+.. +.++..|--..+. ..+...=.++++...+. ++.++..|-.. ....+.
T Consensus 326 iR----Lhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~ 392 (913)
T KOG0495|consen 326 IR----LHPPDVAKTVVANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEP 392 (913)
T ss_pred Hh----cCChHHHHHHHHHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccCh
Confidence 21 122333333333333221 1122222111111 11111222333333332 12222222222 222333
Q ss_pred hHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003725 246 EEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRM 325 (800)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (800)
+.|.-++....+.- +.+. -|.-++.+..-|+.|..++....+. ++.+..+|.+-...--.+|+.+...+++++-
T Consensus 393 ~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 393 EDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444444444321 1111 2223334444455555555555543 3444445544444444455555554444432
Q ss_pred H----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 326 K----QLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMG 398 (800)
Q Consensus 326 ~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 398 (800)
. ..|+..+...|..=...+-+.|..--+..+....+..|+... .+|..-...|.+.+.++-|..+|....+--
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 2 234444555554444455555555555555555555544433 444555555555555555555555444332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003725 399 IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNV 478 (800)
Q Consensus 399 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 478 (800)
+. +...|......--..|..++...+|++....- +-....|-.....+-..|++..|..++....+.... +...|..
T Consensus 547 p~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwla 623 (913)
T KOG0495|consen 547 PC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLA 623 (913)
T ss_pred cc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 21 33444444444444455555555555555431 113333444444444555555555555555544322 4444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--ccCHHHHHHHHHccCCH
Q 003725 479 LARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--LENYSAMVDGYCEANHL 556 (800)
Q Consensus 479 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 556 (800)
-+.....+..++.|..+|.+.... .|+..+|.--+...--.++.++|.+++++.++.-. ...|..+.+.+-+.++.
T Consensus 624 avKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence 555555555555555555554443 33433443333333344555555555554444321 11244444455555555
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003725 557 EEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFL 636 (800)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 636 (800)
+.|.+.|..-.+.-+. ....|..+...--+.|.+-+|..++++..-.+ +.+...|...|.+-.+.|+.+.|..++.++
T Consensus 702 e~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555544432222111 12223333333344455555555555554444 345555666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHH
Q 003725 637 TRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASD 716 (800)
Q Consensus 637 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 716 (800)
++.-+. +-..|.--|....+.++-..+...+++ +.-|.....++...+-. ...++.|.+
T Consensus 780 LQecp~-sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~---------------e~k~~kar~ 838 (913)
T KOG0495|consen 780 LQECPS-SGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWS---------------EKKIEKARE 838 (913)
T ss_pred HHhCCc-cchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHH---------------HHHHHHHHH
Confidence 654222 445555555555555553333333333 23343333333333322 445666666
Q ss_pred HHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 717 FLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 717 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
.|......+ || +..+|..+...+...|.-++-.+++.+..
T Consensus 839 Wf~Ravk~d--~d---------~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 839 WFERAVKKD--PD---------NGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHccC--Cc---------cchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 666655433 32 56667777777777777777777777665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-15 Score=163.15 Aligned_cols=451 Identities=14% Similarity=0.082 Sum_probs=226.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 268 STIIQGLCENGRLDVGYDLLLKWSENGIPLN-AFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCK 346 (800)
Q Consensus 268 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 346 (800)
-.-+-...+.|+++.|++.|++..+.. +.+ ...+ .++..+...|+.++|+.++++.... -.........+...|..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Confidence 333444567777788888877777763 222 1233 6777777777777887777777621 11223333334556777
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (800)
.|++++|+++++++.+..+....++..++..+...++.++|++.++++..... +...+..++..+...++..+|++.+
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchHHHHHHHH
Confidence 77777777777777777666555555666777777777777777777666533 3333433333333344554577777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKP 506 (800)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 506 (800)
+++.+.++. +...+..+...+.+.|-...|.++..+-.+. +. ...+..|-. +.+.+..+ .+..+
T Consensus 193 ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l~~--------~~~a~~vr----~a~~~ 256 (822)
T PRK14574 193 SEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQLER--------DAAAEQVR----MAVLP 256 (822)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHHHH--------HHHHHHHh----hcccc
Confidence 777766432 5566666666777777766666555543221 11 111111100 00000000 00000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCccC-------HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhc
Q 003725 507 NVITHNMIIEGLCTSGRVKEARAFFDDDLKE--KCLEN-------YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSES 577 (800)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 577 (800)
+..- - .+.--.+.|..-++..+.. +.++. ..-.+-++...|++.++++.|+.+...+......+
T Consensus 257 ~~~~----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 257 TRSE----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred cccc----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 0000 0 0000112222222211110 11110 11223344555556666666666655554444445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------
Q 003725 578 CCKLLTNLLIEGYNNKAFKLLDTMLKLDA-----KPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGL----------- 641 (800)
Q Consensus 578 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------- 641 (800)
...+..+|...+.+++|..+++.+..... .++......|..+|...+++++|..+++.+.+..+
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 55555666666666666666665544321 11222234555566666666666666666554211
Q ss_pred --CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHH
Q 003725 642 --IPDL-ISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPD-VVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDF 717 (800)
Q Consensus 642 --~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 717 (800)
.||- ..+..++..+.-.|++.+|++.++++... .|. ......+...+.. +|.+.+|++.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~---------------Rg~p~~A~~~ 472 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLA---------------RDLPRKAEQE 472 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh---------------cCCHHHHHHH
Confidence 1121 12233344455666666666666666543 333 2233333333332 4556666666
Q ss_pred HHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 718 LEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIV 776 (800)
Q Consensus 718 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 776 (800)
++..... .|+ +..+....+.++...|++++|..+.+.+.+ ..|+..
T Consensus 473 ~k~a~~l--~P~---------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 473 LKAVESL--APR---------SLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred HHHHhhh--CCc---------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence 6444432 333 555555666666666666666666666653 344444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-15 Score=161.85 Aligned_cols=203 Identities=14% Similarity=0.030 Sum_probs=114.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc
Q 003725 447 GYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQG-----VKPNVITHNMIIEGLCTS 521 (800)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 521 (800)
++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+.... .+++......|..+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 444455555555555555554433333344455555555555555555555554321 111222233444455555
Q ss_pred CCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCCh--h-cHHHHHHHHHh
Q 003725 522 GRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGF-----------LMRS--E-SCCKLLTNLLI 587 (800)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~--~-~~~~l~~~~~~ 587 (800)
+++++|..+++ ++.+..+ .|++ . ....++..+..
T Consensus 381 e~~~~A~~~l~--------------------------------~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 381 EQLDKAYQFAV--------------------------------NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred ccHHHHHHHHH--------------------------------HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 55555555555 3333111 1121 1 22334555667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 588 EGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNI 667 (800)
Q Consensus 588 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 667 (800)
.|+..+|.+.++.+.... +-|......+.+.+...|.+..|+..++.+....+. +..+....+.++...|++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 777777777777776654 566667777777777777788777777666655444 566666777777777778887777
Q ss_pred HHHHHHcCCCCCHHHHHH
Q 003725 668 FKDMKLRGIKPDVVLYTI 685 (800)
Q Consensus 668 ~~~m~~~g~~pd~~~~~~ 685 (800)
.+.+.+. .|+......
T Consensus 507 ~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 507 TDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHhh--CCCchhHHH
Confidence 7777653 555544433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-14 Score=147.33 Aligned_cols=603 Identities=13% Similarity=0.067 Sum_probs=398.8
Q ss_pred HHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 003725 167 KAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFE 246 (800)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 246 (800)
.....+|++++|..++.++++.+ +.+..+|..|...|-..|+.+++...+--..... +.|...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33445599999999999999986 5678899999999999999999999887665543 446678999999999999999
Q ss_pred HHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCChHHHHHHH
Q 003725 247 EAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYT----AVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~ 322 (800)
+|.-.|.++++.. +++...+-.-+..|-+.|+...|.+-|.++.....+.+..-+. .+++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999876 3466666666778889999999999999999975322322222 3455666777779999998
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------------------------chHHHHHH
Q 003725 323 LRMKQL-RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIK---------------------------TNYVVSVI 374 (800)
Q Consensus 323 ~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~l 374 (800)
+..... +-.-+...++.++..+.+...++.|......+...... ++.....+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 887763 22335567888899999999999999988887762111 11111233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003725 375 LKCLCQMGKTSEAIKKFKEFKSMG--IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRG 452 (800)
Q Consensus 375 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 452 (800)
.-++......+....+...+.+.. +.-+...|.-+..+|...|.+.+|+.+|..+......-+...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 444555555555555555566555 444567788899999999999999999999998866667789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 453 KLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMK--------KQGVKPNVITHNMIIEGLCTSGRV 524 (800)
Q Consensus 453 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~ 524 (800)
.+++|...|...+...+. +...--+|...+.+.|+.++|.+.+..+. ..+..|+..........+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999886432 55566777788899999999999999854 234566666666677778888888
Q ss_pred HHHHHHHHHHHhcc-------------------------CccCHHHHHHHHHccCCHHHHHHH------HHHHHHcCCCC
Q 003725 525 KEARAFFDDDLKEK-------------------------CLENYSAMVDGYCEANHLEEAFQF------FMTLSQRGFLM 573 (800)
Q Consensus 525 ~~a~~~~~~~~~~~-------------------------~~~~~~~l~~~~~~~g~~~~A~~~------~~~~~~~~~~~ 573 (800)
++-..+...++... .......++.+-.+.++......- +......+...
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 77544333111100 000122333333333332221111 11111222222
Q ss_pred Ch--hcHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC--
Q 003725 574 RS--ESCCKLLTNLLIEGYNNKAFKLLDTMLKLDA--KPSK---TTYDKVIGALCLAGKIKWAHQVFDFLTRH-GLIP-- 643 (800)
Q Consensus 574 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-- 643 (800)
+. ..+..++.++++.+.+++|..+...+..... .++. ..-...+.+.+..+++..|...+..+... +...
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 22 2456677788999999999999999887632 2222 12234456777899999999999888853 2111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHH
Q 003725 644 -DLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMK 722 (800)
Q Consensus 644 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 722 (800)
-...||...+...+.|+-.-=.+++..+... .|+......++.|.. +...+.+..|.+.+-..-
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~-------------~~~~~s~~~Al~~y~ra~ 767 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHN-------------LFVNASFKHALQEYMRAF 767 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechh-------------HhhccchHHHHHHHHHHH
Confidence 3455665666666666655555555554432 333322233333322 234566777887654433
Q ss_pred HCCCCchhhhccCCCCCcchHHHHHHHHHh--cC--------CHHHHHHHHHHHHHCCCC--CCHHHHHHHHccccCCCC
Q 003725 723 EMEISPDVMLGQGLEPDTVCYTVLIARLCY--TN--------NLVDALIVFDEMIDRGLE--PNIVIYKALLCGCPTKKD 790 (800)
Q Consensus 723 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~--~g--------~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~ 790 (800)
...|| ++.+--+++-++.. .+ -.-..+.++.+..+.... -....|| ++.+|...|-
T Consensus 768 --~~~pd---------~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YN-igRayh~~gl 835 (895)
T KOG2076|consen 768 --RQNPD---------SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYN-IGRAYHQIGL 835 (895)
T ss_pred --HhCCC---------CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHHHHHHccc
Confidence 33442 23222233333221 11 123455566555543221 2344444 8899999999
Q ss_pred HHHHHhhhcC
Q 003725 791 VDKYLSLFAE 800 (800)
Q Consensus 791 ~~~A~~~~~~ 800 (800)
+--|..+|++
T Consensus 836 ~~LA~~YYek 845 (895)
T KOG2076|consen 836 VHLAVSYYEK 845 (895)
T ss_pred HHHHHHHHHH
Confidence 9999888764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-11 Score=122.67 Aligned_cols=492 Identities=12% Similarity=0.024 Sum_probs=383.5
Q ss_pred HHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003725 178 ALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNK 257 (800)
Q Consensus 178 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 257 (800)
=.++++..++.- +.++..|. +-....+.+.|.-++....+. ++.+...| -+|.+..-|+.|..++....+
T Consensus 365 K~RVlRKALe~i-P~sv~LWK----aAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEHI-PRSVRLWK----AAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHhC-CchHHHHH----HHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555542 33444443 344556666688888888764 23333433 456677788999999998877
Q ss_pred CCCCcChhcHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 003725 258 AGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKW----SENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD 333 (800)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 333 (800)
. ++-+..+|.+-...--.+|+.+....++.+- ...|+..+...|..=...+-..|..-.+..+.......|+.-.
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 5 4557788888888788889988888776654 4468888888888888888889999999999999888876543
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003725 334 --KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMD 411 (800)
Q Consensus 334 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 411 (800)
..||..-...|.+.+.++-|..+|...++..+.....|......--..|..++...+|+++...-+. ....|.....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ak 592 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAK 592 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHH
Confidence 3578888889999999999999999998876666688888888888899999999999999887544 4566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 412 ALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRD 491 (800)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 491 (800)
.+-..|++..|..++....+.+.. +...|-.-+.....+..++.|..+|.+.... .|+...|.--+....-.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 888899999999999999887654 7788888889999999999999999998765 5677778777777777899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCccCHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 003725 492 ALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK--EKCLENYSAMVDGYCEANHLEEAFQFFMTLSQR 569 (800)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (800)
|++++++.++. ++.-...|-.+.+.+.+.++++.|.+.|..-++ ..+++.|..+...--+.|.+.+|..++++..-+
T Consensus 670 A~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 670 ALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 99999998886 455577888888899999999999999984333 224555888888888999999999999999988
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 570 GFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYT 649 (800)
Q Consensus 570 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 649 (800)
++. +...|...++.-.+.|+.+.|..+..+++..- +.+...|.--|....+.++-.+..+.+.+. ..|+...-
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVll 821 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLL 821 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHH
Confidence 877 78889999999999999999999999988753 556667777777776666655555555443 23777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC
Q 003725 650 MLIHGFCKLNCLREACNIFKDMKLRGIKPD-VVLYTILCDAYSKIN 694 (800)
Q Consensus 650 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~ll~~~~~~~ 694 (800)
.+...+....++++|.+.|.+.++. .|| -.+|..+..-....|
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhC
Confidence 8888888899999999999999875 455 456666666666544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-14 Score=132.50 Aligned_cols=179 Identities=17% Similarity=0.223 Sum_probs=99.1
Q ss_pred HccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHH--HcCChhHH-HHHHHHHHhCC-------------------CCC
Q 003725 170 CSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLL--KCGEVDMV-LVLYEEMKSVG-------------------FSL 227 (800)
Q Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~m~~~~-------------------~~~ 227 (800)
..+|.+.++.-+|+.|...|...+...-..|+..-+ ...++.-| ++.|-.|.+.| .+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PK 205 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPK 205 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCC
Confidence 345777777777777777776666666555544322 22222111 22333333322 123
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003725 228 NQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIR 307 (800)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 307 (800)
+..||.+||.++|+-...+.|.++|++......+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 445666666666666666666666666655545556666666655433221 1455666666666666666666666
Q ss_pred HHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 308 EFCQNSRLVE----AESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIK 352 (800)
Q Consensus 308 ~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 352 (800)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 6666665543 33455566666666666666666666666555543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-14 Score=136.74 Aligned_cols=474 Identities=14% Similarity=0.085 Sum_probs=285.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcChhcH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 003725 235 VIKALCKLARFEEAFDVLNEMNKAGVTLHGHNY-STIIQGLCENGRLDVGYDLLLKWSENGIPLN----AFAYTAVIREF 309 (800)
Q Consensus 235 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~ 309 (800)
|...|..+....+|+..|+-+.+..+-||.... ..+...+.+...+.+|+++++.....-...+ ....+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 444455556667777777766665555554332 2344556667777777777776665411111 22344455556
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-H--------HHHHHHHHHHh
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-Y--------VVSVILKCLCQ 380 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~--------~~~~l~~~~~~ 380 (800)
.+.|++++|..-|+...+. .|+..+-..|+-++...|+-++..+.|.+|+.....++ . .-..++.-..+
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 7778888888888777764 46776666666666677788888888887765433222 0 01111111111
Q ss_pred cCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003725 381 MGK-----------TSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYI 449 (800)
Q Consensus 381 ~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 449 (800)
... .++++-.--++..--+.|+-. .| .+-+++.++.-.-..+. ...--.-...|.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la--~dlei~ka~~~l 430 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELA--IDLEINKAGELL 430 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhh--hhhhhhHHHHHH
Confidence 110 111111111111111111100 00 01112221111100000 000011123467
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 450 LRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGL-AQ-YGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEA 527 (800)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 527 (800)
++|+++.|+++++-+.+..-+.-...-+.|-..+ .+ -.++..|.++-+..+... .-++.....-.......|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHH
Confidence 7888888888887776553322222223332222 22 235666766666655432 22333332223334456888888
Q ss_pred HHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003725 528 RAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLD 605 (800)
Q Consensus 528 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 605 (800)
.+++++.+... +......+.-.+-..|+.++|+++|-++...- ..+..++..+...|-...+...|++++-+....
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 88888666544 23334444555677888899998887765432 225677788888888899999999999887654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003725 606 AKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTI 685 (800)
Q Consensus 606 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 685 (800)
++.|+.+.+.|...|-+.|+-..|.+++-.--+. +..+..+...|...|....-+++|+.+|++..- +.|+..-|-.
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwql 664 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQL 664 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHH
Confidence 4678888999999999999999998877655443 445888888888888999999999999998764 7999999999
Q ss_pred HHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCC
Q 003725 686 LCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNN 755 (800)
Q Consensus 686 ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~ 755 (800)
++.+|.+ ..|++..|..+++.....- | .|..+.--|++.+...|.
T Consensus 665 miasc~r--------------rsgnyqka~d~yk~~hrkf--p---------edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFR--------------RSGNYQKAFDLYKDIHRKF--P---------EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHH--------------hcccHHHHHHHHHHHHHhC--c---------cchHHHHHHHHHhccccc
Confidence 9999987 5788999999998876532 2 277888888888777774
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-13 Score=126.97 Aligned_cols=312 Identities=18% Similarity=0.218 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cCChh-HHHHHHHHHHhCC-----------
Q 003725 194 KFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK--LARFE-EAFDVLNEMNKAG----------- 259 (800)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~-~A~~~~~~~~~~~----------- 259 (800)
+++=|.|+. +...|.++.+.-+|+.|.+.|++.+...-..|++.-+- ..++- .-++.|-.|.+.|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 345556555 46788999999999999988877666655555443332 22211 1122333333322
Q ss_pred --------CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003725 260 --------VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVT 331 (800)
Q Consensus 260 --------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 331 (800)
.+....++..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 12345677888888888878888888888777766677777888777664332 226777778777778
Q ss_pred CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC-
Q 003725 332 PDKYVYSALISGYCKCGNIIK----ALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSE-AIKKFKEFKS----MGIF- 400 (800)
Q Consensus 332 p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~~~- 400 (800)
||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|. .+|..++..+++.++..+ +..++.++.. ....
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 888888888888888887665 4556677777777777 777777777777666533 3333333321 1111
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003725 401 ---LDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQ----IVPD---VANYTTVIDGYILRGKLVDAIGLFKKMREMGHK 470 (800)
Q Consensus 401 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (800)
-|...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....|+....+.-...|+.|.-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 234455666677777777777777666554321 2222 233455666667777777777777777666566
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 471 PDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVIT 510 (800)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (800)
|+..+...++++....|.++-.-+++.+++..|..-+...
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 6777777777777777777777777777776654333333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-13 Score=131.22 Aligned_cols=491 Identities=14% Similarity=0.068 Sum_probs=295.3
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHH-HHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHh
Q 003725 157 VFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTC-NFFMNQLLKCGEVDMVLVLYEEMKSVGFSLN----QFT 231 (800)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~ 231 (800)
.+..+...|...|....+..+|+..|+-+.+....|+.-.. ..+.+.+.+..++.+|+++|+-....-...+ +..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 34455666677777777777777777776665544444322 2344556666777777777765554311111 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH--------H
Q 003725 232 YDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAY--------T 303 (800)
Q Consensus 232 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~ 303 (800)
.+.+...+.+.|.+++|+..|+...+. .||..+--.|+-++..-|+-++..+.|.+|+..-..++..-| .
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 444444556677777777777766554 356555445555555566777777777776653222222111 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHhc
Q 003725 304 AVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN--YVVSVILKCLCQM 381 (800)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 381 (800)
.|+.-..+.. .++.|.+.+ ..+-++++-.-.+++..-+.|+ ..+..-+..+-..
T Consensus 357 ~ll~eai~nd-------~lk~~ek~~-----------------ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s 412 (840)
T KOG2003|consen 357 NLLNEAIKND-------HLKNMEKEN-----------------KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKAS 412 (840)
T ss_pred HHHHHHHhhH-------HHHHHHHhh-----------------hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHh
Confidence 1111111111 111221110 0112222222222332222333 1111111111111
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hh-cCCHHHHHH
Q 003725 382 GKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGY-IL-RGKLVDAIG 459 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~-~g~~~~A~~ 459 (800)
...+-|.+ ... + -..-|.+.|+++.|+++++-..+++-+.-...-+.|-..+ .+ -.++.+|..
T Consensus 413 ~~~~la~d-------------lei-~-ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 413 QHAELAID-------------LEI-N-KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhhhhhhh-------------hhh-h-HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 11111111 111 1 1234678899999999999888764333333333333322 22 335777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--Hhc
Q 003725 460 LFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDD--LKE 537 (800)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~ 537 (800)
+-+..+...- -+......-.......|+++.|.+.+++.+...-......| .+.-.+.+.|++++|.+.|-+. +-.
T Consensus 478 yad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 478 YADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 7776654321 13333333333344578999999999999866422222222 2333567889999999998732 223
Q ss_pred cCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 538 KCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVI 617 (800)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 617 (800)
.+......+...|.-..+...|++++.+.... +..|+..++.+...|-+.|+...|.+.+-.--+ -++.+..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHH
Confidence 45555777888899999999999999877654 333778899999999999999999987765543 2467888888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 003725 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGF-CKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINK 695 (800)
Q Consensus 618 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~ 695 (800)
.-|....-.++|..+|++..- +.|+..-|..|+..| .+.|++.+|.++|++.-.+ ++-|.....-|+.-|..+|.
T Consensus 634 ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 889999999999999998765 679999998888755 5889999999999998875 67788888888888887664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-11 Score=116.75 Aligned_cols=438 Identities=11% Similarity=0.026 Sum_probs=317.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHH
Q 003725 105 NVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQ 184 (800)
Q Consensus 105 ~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 184 (800)
+...|-.....=-.++...+|.++++.++... ..+...|...+..-.+.+.+..|..++++
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-------------------~r~itLWlkYae~Emknk~vNhARNv~dR 132 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-------------------YRNITLWLKYAEFEMKNKQVNHARNVWDR 132 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-------------------cccchHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 45566666666666888899999999887652 12344677788888888999999999988
Q ss_pred ccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCh
Q 003725 185 TDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHG 264 (800)
Q Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (800)
....=...|. .|-..+.+=-..|++..|.++|+.-.+ ..|+...|.+.|+.=.+-+.++.|..+|+...- +.|++
T Consensus 133 Avt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v 207 (677)
T KOG1915|consen 133 AVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKV 207 (677)
T ss_pred HHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccH
Confidence 7765322232 344444555667999999999999887 579999999999999999999999999998875 35899
Q ss_pred hcHHHHHHHHHhcCChhHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 003725 265 HNYSTIIQGLCENGRLDVGYDLLLKWSEN-G-IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD--KYVYSAL 340 (800)
Q Consensus 265 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l 340 (800)
.+|.-.+.--.+.|....|..+++...+. | -..+...+.+....-.++..++.|.-+|+-.... ++.+ ...|..+
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKY 286 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHH
Confidence 99998888888999999999999988774 2 1122344555555556677888999898887764 2222 4455555
Q ss_pred HHHHHhcCCHHHHHHH--------HHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHH---
Q 003725 341 ISGYCKCGNIIKALSL--------HGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVC-YNV--- 408 (800)
Q Consensus 341 i~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~--- 408 (800)
...--+-|+.....+. ++.+...++-.-.+|...++.-...|+.+...+.|++....-++..... |.-
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHH
Confidence 5555556665444332 4555555554447888888888888999999999998887644322211 111
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003725 409 -----IMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGY----ILRGKLVDAIGLFKKMREMGHKPDIKAYNVL 479 (800)
Q Consensus 409 -----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (800)
.+-.-....+++.+.++++...+. ++....||..+--.| .++.++..|.+++...+ |.-|-..+|...
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~Y 443 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGY 443 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHH
Confidence 111123467888899999888873 444455665554333 46788888988888776 456788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccC----HHHHHHHHHccCC
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN----YSAMVDGYCEANH 555 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~l~~~~~~~g~ 555 (800)
|..-.+.+.++.+..++++.++.+ |-+..++......-...|+.+.|..+|+-++.++..+. |.+.|+.-...|.
T Consensus 444 IelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 888888999999999999998876 56677777777777788999999999986666664443 6677777778889
Q ss_pred HHHHHHHHHHHHHcCC
Q 003725 556 LEEAFQFFMTLSQRGF 571 (800)
Q Consensus 556 ~~~A~~~~~~~~~~~~ 571 (800)
+++|..+|+++++...
T Consensus 523 ~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998887754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-13 Score=130.96 Aligned_cols=413 Identities=14% Similarity=0.096 Sum_probs=263.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC
Q 003725 304 AVIREFCQNSRLVEAESVLLRMKQLRVTPD-KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG 382 (800)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 382 (800)
...+-|.+.|.+++|+++|...++. .|| ++-|.....+|...|+|+++.+-..+.++.++.-..++..-..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 3445567788888888888888875 466 6777778888888888888888777777665554466677777777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHh-C--CCCCCHHHHHHHHHHHHhc
Q 003725 383 KTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF--------NEMEG-R--QIVPDVANYTTVIDGYILR 451 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~-~--~~~~~~~~~~~li~~~~~~ 451 (800)
+.++|+.=. |...+..++....-.-.+.+++ ++-.+ . .+.|+.....+....+...
T Consensus 198 ~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 198 KFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred cHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 887776422 2222222222222222222222 22222 1 1334444333333322211
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCC---CC------HHHHH
Q 003725 452 ------GKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ-YGSVRDALDCLKYMKKQ---GVK---PN------VITHN 512 (800)
Q Consensus 452 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~---~~~---~~------~~~~~ 512 (800)
...+++-..+....+ ..+.. ...+..|...+.+-... ... .| ..++.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred ccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 000111111100000 00000 01122222222221110 000 01 11222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 003725 513 MIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGY 590 (800)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (800)
.-...+.-.|+.-.|..-|+..+... .+..|-.+..+|...++.++-...|.+....++. ++.+|..-.....-.++
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHH
Confidence 22223445788889999999666543 2333888889999999999999999999998877 88899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 591 NNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKD 670 (800)
Q Consensus 591 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 670 (800)
+++|+.-|++.+... +-+...|..+..+..+.+.++++...|++..++ +...+..|+....++...+++++|.+.|+.
T Consensus 410 ~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 999999999999876 456667888888888999999999999999876 444788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHH
Q 003725 671 MKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARL 750 (800)
Q Consensus 671 m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~ 750 (800)
.++ +.|+......-+.-+.+ ..+..++-.+++..|.+++++..+...+ ....|.+|+...
T Consensus 488 ai~--LE~~~~~~~v~~~plV~-------Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-----------ce~A~~tlaq~~ 547 (606)
T KOG0547|consen 488 AIE--LEPREHLIIVNAAPLVH-------KALLVLQWKEDINQAENLLRKAIELDPK-----------CEQAYETLAQFE 547 (606)
T ss_pred HHh--hccccccccccchhhhh-------hhHhhhchhhhHHHHHHHHHHHHccCch-----------HHHHHHHHHHHH
Confidence 987 45552111000000000 0111223458899999999988764433 667899999999
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003725 751 CYTNNLVDALIVFDEMID 768 (800)
Q Consensus 751 ~~~g~~~~A~~~~~~~~~ 768 (800)
...|+.++|+++|++...
T Consensus 548 lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 548 LQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998763
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-10 Score=113.47 Aligned_cols=386 Identities=10% Similarity=0.042 Sum_probs=208.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 276 ENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALS 355 (800)
Q Consensus 276 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 355 (800)
..|++..|.++|+.+.+- .|+..+|.+.|..-.+-..++.|..+++...- +.|++.+|.-....--+.|+...|..
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 344444444444444442 44444455555444444445555555544443 23444444444444444455544544
Q ss_pred HHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH-------
Q 003725 356 LHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFL-DQVCYNVIMDALCKLGEVEEAVK------- 424 (800)
Q Consensus 356 ~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~------- 424 (800)
+|+...+.-.... ..+......-.++..++.|.-+|+-....-+.- ....|..+...--+.|+.....+
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 4444433211110 222333333333444455555554444332211 12233333332223333322221
Q ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHH--------HHhcCCHHHHH
Q 003725 425 -LFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI--KAYNVLARG--------LAQYGSVRDAL 493 (800)
Q Consensus 425 -~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~--------~~~~g~~~~a~ 493 (800)
-++.+++.++ -|-.+|--.+..--..|+.+...++|+..+.. ++|-. ..|...|.. -....+.+.+.
T Consensus 309 ~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1333344332 25666666666666667777777777777654 23311 122222211 12356777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhccCcc--CHHHHHHHHHccCCHHHHHHHHHHHH
Q 003725 494 DCLKYMKKQGVKPNVITHNMIIEGLC----TSGRVKEARAFFDDDLKEKCLE--NYSAMVDGYCEANHLEEAFQFFMTLS 567 (800)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (800)
++++..++. +|....|+.-+--+|+ ++.++..|.+++...+. .++. .+...|..-.+.++++....+|.+.+
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG-~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG-KCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777764 4555566655544443 45777778777774333 3332 36666777777788888888888888
Q ss_pred HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003725 568 QRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLD-AKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLI 646 (800)
Q Consensus 568 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 646 (800)
+-++. +..+|......-...|+.+.|..+|.-++... .......|.+.|+--...|.+++|..+++++++.. +-..
T Consensus 465 e~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~k 541 (677)
T KOG1915|consen 465 EFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVK 541 (677)
T ss_pred hcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccch
Confidence 77665 66677777777777888888888888877643 22233456666666677889999999999888752 2334
Q ss_pred HHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 003725 647 SYTMLIHGFC-----KLN-----------CLREACNIFKDMK 672 (800)
Q Consensus 647 ~~~~li~~~~-----~~g-----------~~~~A~~~~~~m~ 672 (800)
+|.++...-. +.| ....|..+|++..
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 6666654332 333 5667777777765
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-12 Score=131.42 Aligned_cols=585 Identities=13% Similarity=0.059 Sum_probs=319.0
Q ss_pred CchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHH
Q 003725 139 LNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYE 218 (800)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (800)
..|.+.+++..+...|..|+..+|..+|..||..|+.+.|- +|.-|.-...+.....++.++.+....++.+.+.
T Consensus 5 ~kf~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 5 VKFFPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred cccCcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----
Confidence 34556678888888899999999999999999999999999 8888888777778889999999999988877665
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhH---HHHHHHHHH----hCCCCcChhcHHH---------------HHHHHHh
Q 003725 219 EMKSVGFSLNQFTYDIVIKALCKLARFEE---AFDVLNEMN----KAGVTLHGHNYST---------------IIQGLCE 276 (800)
Q Consensus 219 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~----~~~~~~~~~~~~~---------------li~~~~~ 276 (800)
.|-..||..|..+|.+.|++.- ..+.++.+. ..|+- ....+.. .+....-
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 5888999999999999998754 333222222 12221 1111111 1222222
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 277 NGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSL 356 (800)
Q Consensus 277 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 356 (800)
.|-++.+++++..+...... . .+..+++-... .....+++........-.|+..+|..+++.-...|+.+.|..+
T Consensus 152 eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHhhCCccccc-c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 33334444433332221100 0 11111222221 1223333443333322258999999999999999999999999
Q ss_pred HHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003725 357 HGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIV 435 (800)
Q Consensus 357 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (800)
+.+|.+.|++.. .-|-.++-+ .++..-+..+++-|.+.|+.|+..|+...+..+..+|....+....+.- ..
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~----hg 299 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA----HG 299 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh----hh
Confidence 999999998877 333333333 7888888899999999999999999998888887766532221111110 00
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC-C
Q 003725 436 PDVANYTTVIDGYILRGKLVD-----AIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQG--VKP-N 507 (800)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~-----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-~ 507 (800)
.....+..+..+.....+.+. ....+.+..-.|+.....+|..... ...+|..++..++-..+..-- ..+ +
T Consensus 300 ~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~ 378 (1088)
T KOG4318|consen 300 FTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQN 378 (1088)
T ss_pred hhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcch
Confidence 112222333322111111111 1222222222344433444443333 333677777777777665321 111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH--HHHhcc-CccCHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-------C
Q 003725 508 VITHNMIIEGLCTSGRVKEARAFFD--DDLKEK-CLENYSAMVDGYCEANHLEEAFQFFMTLSQR----GFL-------M 573 (800)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-------~ 573 (800)
...+..++.-|.+.-+..-...++. +.+... +....-.+..... .-+...+++.+..+... ... +
T Consensus 379 V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ 457 (1088)
T KOG4318|consen 379 VDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHL 457 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence 3344444444433221111111111 111110 0000001111111 11222222222222111 111 1
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHH
Q 003725 574 RSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR--HGLIPDLISYTML 651 (800)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l 651 (800)
-...-+.++..++..-+..++...-+.....-+ ...|..|++-++.....+.|..+.++... ..+..|..-+..+
T Consensus 458 irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 458 IRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 112334455566666555555544444333221 14678888888888889999888887764 3344567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCch
Q 003725 652 IHGFCKLNCLREACNIFKDMKLRGI-KPD-VVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPD 729 (800)
Q Consensus 652 i~~~~~~g~~~~A~~~~~~m~~~g~-~pd-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 729 (800)
.+.+.+.+...++..+++++.+.-. .|+ ..++--++++..- .+..+...++++-+...|+..
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~---------------agqqe~Lkkl~d~lvslgl~e- 598 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAP---------------AGQQEKLKKLADILVSLGLSE- 598 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhh---------------ccCHHHHHHHHHHHHHhhhhh-
Confidence 8889999999999999988886422 222 2223333333332 344555555555555544432
Q ss_pred hhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHc
Q 003725 730 VMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLC 783 (800)
Q Consensus 730 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 783 (800)
+ .-++....+.++...|++..+...+. ++|.+.....+.+
T Consensus 599 ---------t----gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcr 638 (1088)
T KOG4318|consen 599 ---------T----GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCR 638 (1088)
T ss_pred ---------c----ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHH
Confidence 1 12233344555556666655554432 4555544444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-12 Score=130.86 Aligned_cols=546 Identities=13% Similarity=0.086 Sum_probs=269.8
Q ss_pred HccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 003725 184 QTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH 263 (800)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 263 (800)
.+...|+.|+..+|..++..|+..|+++.|- +|.-|.-+..+.+...|+.++.+..+.++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3444556666666666666666666666666 6666655545555556666666666666655554 455
Q ss_pred hhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Q 003725 264 GHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMK-QLRVTPDKYVYSALIS 342 (800)
Q Consensus 264 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~ 342 (800)
..+|..|..+|...||+.. ++..++ -...+...+...|--..-..++..+. ..+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 6666666666666666554 222221 01112222333333333333332221 1122233332 233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQM-GKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (800)
.....|-++.+++++..+..........+ +++-+... ..+++-....+...+ .++..+|..++.+-...|+++.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh
Confidence 34445566666666655543322222111 12222222 223333333333332 4788888888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH-------
Q 003725 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALD------- 494 (800)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~------- 494 (800)
|..++.+|.++|++.+.+-|..|+-+ .++...+..++.-|.+.|+.|+..|+...+-.+..+|....+..
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg 299 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHG 299 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhh
Confidence 88888888888888888777777766 67777888888888888888888888777766666443221111
Q ss_pred ----HHHHHHH-------------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc------C
Q 003725 495 ----CLKYMKK-------------------------QGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK------C 539 (800)
Q Consensus 495 ----~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~ 539 (800)
++..|.. .|+.....+|...+.. .-.|+-++.+.+-....... +
T Consensus 300 ~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~ 378 (1088)
T KOG4318|consen 300 FTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQN 378 (1088)
T ss_pred hhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcch
Confidence 0001100 0111111111111111 11344444443333111110 1
Q ss_pred ccCHHHHHHHHHccCCHHHHHHHHH--HHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC------
Q 003725 540 LENYSAMVDGYCEANHLEEAFQFFM--TLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKL----DAK------ 607 (800)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~------ 607 (800)
+..|..++.-|.+.-+..-...++. +.++... +....-.+...+.. -+...+..-+...... ...
T Consensus 379 V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l--~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 379 VDAFGALLRQYFRRIERHICSRIYYAGQGLSLNL--NSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--chhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhhh
Confidence 1113333332222111110001100 1111100 00000001111100 0111111111111110 000
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHH
Q 003725 608 -PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRG--IKPDVVLYT 684 (800)
Q Consensus 608 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~ 684 (800)
+-...-+.++-.|+..-+..+++..-+.....-+. ..|..||+.++...+.+.|..+.++..... +..|..-+.
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~ 532 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMT 532 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHH
Confidence 11122345566666666666666555555443222 678888988888899999998888875321 223444455
Q ss_pred HHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHH-CCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003725 685 ILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKE-MEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVF 763 (800)
Q Consensus 685 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 763 (800)
.+.+...+ -+....+..+++++++ ....|. ...+.--+.+.....|..+.-.+++
T Consensus 533 ~l~dLL~r---------------~~~l~dl~tiL~e~ks~a~n~~~---------~a~~~f~~lns~a~agqqe~Lkkl~ 588 (1088)
T KOG4318|consen 533 SLQDLLQR---------------LAILYDLSTILYEDKSSAENEPL---------VAIILFPLLNSGAPAGQQEKLKKLA 588 (1088)
T ss_pred HHHHHHHH---------------hHHHHHHHHHHhhhhHHhhCCch---------HHHHHHHHHhhhhhccCHHHHHHHH
Confidence 55555544 3346677778877775 222221 1233444556666677777666776
Q ss_pred HHHHHCCCCCCHHHHHHHHccccCCCCHHHHHhhhc
Q 003725 764 DEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLFA 799 (800)
Q Consensus 764 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 799 (800)
+-+...|+.-+ .-+.......++...|.+.++
T Consensus 589 d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 589 DILVSLGLSET----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHhhhhhc----ccceEEEeeccchhhhhhcch
Confidence 66665565442 334455667777777777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-11 Score=123.05 Aligned_cols=282 Identities=13% Similarity=0.069 Sum_probs=178.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003725 437 DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIE 516 (800)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 516 (800)
+......-.+-+...+++.+..++++.+.+.. +++...+..-|..+...|+..+-..+-.++++. .|-.+.+|.++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 55555566667778888888888888887763 335555555566777888887777777777776 3666778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHh--ccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 517 GLCTSGRVKEARAFFDDDLK--EKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
.|...|+..+|.++|.+... ..-.+.|-.+...|.-.|+.+.|+..|....+.-.. ....+..+.-
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgm----------- 388 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGM----------- 388 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHH-----------
Confidence 88888888888888885332 223445888888888888888888777665543111 1111222222
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 595 FKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
-|.+.++++.|.++|..+....+. |+...+-+.-.....+.+.+|..+|+..+..
T Consensus 389 ------------------------ey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 389 ------------------------EYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred ------------------------HHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 344555555555555555544333 4455555554445555555555555554411
Q ss_pred --CCCC----CHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHH
Q 003725 675 --GIKP----DVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIA 748 (800)
Q Consensus 675 --g~~p----d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~ 748 (800)
.+.+ -..+++.|-.+|.+ .+.+++|...++........ +..++.+++-
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rk---------------l~~~~eAI~~~q~aL~l~~k-----------~~~~~asig~ 497 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRK---------------LNKYEEAIDYYQKALLLSPK-----------DASTHASIGY 497 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHH---------------HhhHHHHHHHHHHHHHcCCC-----------chhHHHHHHH
Confidence 0111 11223333333333 23355555555555543333 8888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccc
Q 003725 749 RLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGC 785 (800)
Q Consensus 749 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 785 (800)
+|...|+++.|++.|++.+ .+.||..+...+++.+
T Consensus 498 iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999999999999999998 7899998888777644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-12 Score=132.55 Aligned_cols=223 Identities=14% Similarity=0.098 Sum_probs=115.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHH
Q 003725 410 MDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI-------KAYNVLARG 482 (800)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~ 482 (800)
...+...|+++.|...++++.+.++. +......+...|.+.|++++|..++..+.+.+..++. .+|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34555555566666655555554432 4455555555555556666666555555554433111 112222222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHH
Q 003725 483 LAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQF 562 (800)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 562 (800)
.....+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+++.++. ....-..++.+.
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~------------ 304 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPR------------ 304 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhh------------
Confidence 22233334444444443322 2334555555555555555555555555533331 111111112222
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003725 563 FMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLI 642 (800)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 642 (800)
+..++.+++++..+...+.. +.|+..+..+...|...|++++|.+.|+.+.+. .
T Consensus 305 -----------------------l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~ 358 (398)
T PRK10747 305 -----------------------LKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--R 358 (398)
T ss_pred -----------------------ccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 23344555555555554443 344555666777777777777777777777763 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 643 PDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 643 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
|+...+..+..++.+.|+.++|.+++++-+.
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666777777777777777777776653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-10 Score=109.92 Aligned_cols=325 Identities=13% Similarity=0.108 Sum_probs=139.2
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cChhcHHHH
Q 003725 192 WSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVT-LHGHNYSTI 270 (800)
Q Consensus 192 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 270 (800)
.|...+-....++.+.|..+.|...|.+....- +-.=..|..|... .-+.+.+ ......+.. .+.-.--.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~----~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEIL----SILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHH----HHHHhcCcccchHHHHHHH
Confidence 344444455556666777777777777665431 2222223222222 1122222 111111111 011111123
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVT--PDKYVYSALISGYCKCG 348 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g 348 (800)
..++-.....+++++-.+.....|++-+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++.. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 3444455566666666666666666555555555555555666677777777777665210 134445443322 211
Q ss_pred CHHHHHHHHHHH-HHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 349 NIIKALSLHGEM-TSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFN 427 (800)
Q Consensus 349 ~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (800)
+- .+.++.+- ...+---..+...+.+.|.-.++.++|...|++..+.++. ....|+.+..-|....+...|.+-++
T Consensus 312 ~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 11111111 1100000123333444444444444444444444443332 23334444444444444444444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 428 EMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPN 507 (800)
Q Consensus 428 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (800)
..++-++. |-..|-.|..+|.-.+...-|+-.|++..+..+ -|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 44443322 444444444444444444444444444443311 134444444444444444444444444444433 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 508 VITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
...+..|...|.+.++.++|...|+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444444444444444444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-11 Score=129.66 Aligned_cols=85 Identities=18% Similarity=0.031 Sum_probs=63.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 588 EGYNNKAFKLLDTMLKLDAKPSK--TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREAC 665 (800)
Q Consensus 588 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 665 (800)
.++.+.+.+.++...+.. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.
T Consensus 312 ~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 355666677777766553 3344 5667888888999999999999986444445678888888899999999999999
Q ss_pred HHHHHHHH
Q 003725 666 NIFKDMKL 673 (800)
Q Consensus 666 ~~~~~m~~ 673 (800)
+++++.+.
T Consensus 391 ~~~~~~l~ 398 (409)
T TIGR00540 391 AMRQDSLG 398 (409)
T ss_pred HHHHHHHH
Confidence 99988654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-11 Score=126.10 Aligned_cols=281 Identities=12% Similarity=0.025 Sum_probs=135.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHH--HHHHHHHhcCChhHH
Q 003725 207 CGEVDMVLVLYEEMKSVGFSLNQFT-YDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYS--TIIQGLCENGRLDVG 283 (800)
Q Consensus 207 ~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a 283 (800)
.|+++.|.+.+....+.. +++.. |........+.|+++.|.+.++++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 467776666665544431 12222 222233335667777777777766653 23332222 234556666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 003725 284 YDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKY-------VYSALISGYCKCGNIIKALSL 356 (800)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~ 356 (800)
.+.++++.+.+ |-++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777766664 4456666666677777777777777777776654432221 122222222223333333334
Q ss_pred HHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003725 357 HGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP 436 (800)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 436 (800)
++.+.+.-.........+...+...|+.++|.+.+++..+.. ++... .++.+.+..++.+++.+..+...+..+.
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 333332211111344444444444555555555444444421 12211 1122222334555555555555444322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 437 DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 499 (800)
|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|..++++-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444555555555555555555555443 344444445555555555555555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-11 Score=127.39 Aligned_cols=292 Identities=13% Similarity=0.014 Sum_probs=222.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 344 YCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAV 423 (800)
Q Consensus 344 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 423 (800)
....|+++.|.+.+.+..+....|...+.....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34689999999999998887666656667778888899999999999999877654433334444578888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH---HHHhcCCHHHHHHHHHHH
Q 003725 424 KLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNV-LAR---GLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~---~~~~~g~~~~a~~~~~~~ 499 (800)
..++.+.+..+. +...+..+...+...|++++|.+++..+.+.+.. +...+.. -.. .....+..+.+.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999988644 6788889999999999999999999999988754 3333321 112 223333444444555555
Q ss_pred HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccC----HHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 003725 500 KKQGV---KPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN----YSAMVDGYCEANHLEEAFQFFMTLSQRGFL 572 (800)
Q Consensus 500 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 572 (800)
.+... +.+...+..+...+...|+.++|.+.+++.++...... .....-.....++.+.+.+.+++..+..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 55421 23788888999999999999999999997776432222 122222334567889999999888877654
Q ss_pred CCh--hcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003725 573 MRS--ESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR 638 (800)
Q Consensus 573 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 638 (800)
++ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 332 -~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 -KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 667789999999999999999999644444578988899999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-11 Score=115.27 Aligned_cols=221 Identities=13% Similarity=0.032 Sum_probs=165.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 448 YILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEA 527 (800)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 527 (800)
+.-.|+.-.|...|+..+.....++. .|--+...|....+.++....|.+..+.+ +.++.+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44567888888888888877544333 26666677888888888888888888876 55677787778888888888899
Q ss_pred HHHHHHHHhccC--ccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003725 528 RAFFDDDLKEKC--LENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLD 605 (800)
Q Consensus 528 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 605 (800)
..-|++.+.-.. .-.|-.+.-+..+.++++++...|++..++-+. -+..++.....+...++++.|.+.|+..++..
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 888885444332 222555555566788889999999888887544 67788888899999999999999999888763
Q ss_pred CC-------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 606 AK-------PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 606 ~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.. +.+.+...++-.- -.+++..|..++.++.+.++. ....|.+|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 1222222222222 348999999999999998777 667899999999999999999999999764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-10 Score=112.34 Aligned_cols=506 Identities=13% Similarity=0.037 Sum_probs=280.6
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 003725 158 FYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIK 237 (800)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 237 (800)
+..-+..+++-+..+.++..|.-+-++....+ .++..--.+++++.-.|+++.|..+...-.-. ..|.........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 33445666666667777777777777766554 33444455777777788887777766554321 346667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003725 238 ALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVE 317 (800)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 317 (800)
.+.+..++++|..++..... .-+...|-.-=. ...-..+.+.+.. +.......+-.-...|......++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~~~~------~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAGEDL------MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCcccccc------cccchhceeeeeeehhhhhccHHH
Confidence 77788888888887763210 000000000000 0000000000000 000011111111223333444555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ch-HHHHHHHHHH-HhcCCHHHHHHHH
Q 003725 318 AESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIK----TN-YVVSVILKCL-CQMGKTSEAIKKF 391 (800)
Q Consensus 318 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~-~~~~~l~~~~-~~~g~~~~a~~~~ 391 (800)
|...|.+.... |...+..+...-.. ..-.+.+.++.+...... .+ .....+.... ++.-+. +....-
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~ 232 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRN 232 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccC
Confidence 55555555432 33333322211110 011111111111111100 00 0000000000 000000 000000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003725 392 KEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP 471 (800)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (800)
.+..-.+..-+......-.+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+.- +.
T Consensus 233 ~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~ 310 (611)
T KOG1173|consen 233 EDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PS 310 (611)
T ss_pred chhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CC
Confidence 000001122234444444555666677777777777776653 2344455555566777777666666666666542 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCccCHHHHHHH
Q 003725 472 DIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK--EKCLENYSAMVDG 549 (800)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 549 (800)
...+|-++.--|...|+..+|.++|.+....+ +.-...|..+...|.-.|..++|...+..+.+ .++.-.+..+.--
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME 389 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 45667777777777777777777777665443 12234566666777777777777777663333 2333334445556
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhc
Q 003725 550 YCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKL----D--AKPSKTTYDKVIGALCLA 623 (800)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~ 623 (800)
|.+.+...-|.+.|.+.....+. |+...+.+.-.....+.+.+|..+|+..+.. + ..--..+++.|+.+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 67777777777777777665543 5666666666666677777887777776622 1 011344688999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 624 GKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 624 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
+.+++|+..+++.+...+. +..++.++.-.|...|+++.|.+.|.+.+- +.||..+...++..+..
T Consensus 469 ~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999999999999987666 999999999999999999999999999984 79999888877776554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-11 Score=111.24 Aligned_cols=285 Identities=13% Similarity=0.116 Sum_probs=157.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCh------hcHHHHHHHHHhcCChh
Q 003725 208 GEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHG------HNYSTIIQGLCENGRLD 281 (800)
Q Consensus 208 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~ 281 (800)
++.++|...|-+|.+.. +-+..+.-+|.+.|-+.|..+.|+++.+.+.++ ||. .....|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44555555555555421 122233344555555555555555555555442 221 12333444455556666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 003725 282 VGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALSLH 357 (800)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~ 357 (800)
.|.++|..+.+.+ .--..+...|+..|-...+|++|+++-+++.+.+..+.. ..|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 6666666555543 223345555666666666666666666666655433322 12444455555566677777777
Q ss_pred HHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003725 358 GEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPD 437 (800)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 437 (800)
.+..+.+.+...+-..+.+.....|++..|++.++...+.++..-..+...|..+|...|+.++....+..+.+... .
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 77666655555555566666667777777777777776666555555666777777777777777777777766532 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 003725 438 VANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ---YGSVRDALDCLKYMKK 501 (800)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 501 (800)
...-..+........-.+.|...+.+-+.. +|+...+..++..... .|...+.+..++.|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 223333333333333445555555544443 5777777777765543 2344555555555553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-14 Score=140.79 Aligned_cols=257 Identities=17% Similarity=0.167 Sum_probs=55.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCC
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVG-FSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGR 279 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 279 (800)
...+.+.|++++|++++++..... .+.|...|..+.......+++++|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553322211 1122222233333333445555555555555443321 33334444443 34455
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 280 LDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLR-VTPDKYVYSALISGYCKCGNIIKALSLHG 358 (800)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 358 (800)
+++|.++++...+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555544443332 1233344444444555555555555555544321 12344444444455555555555555555
Q ss_pred HHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003725 359 EMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDV 438 (800)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 438 (800)
+..+..+....+...++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.++++....+.. |.
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~ 248 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DP 248 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--H
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-cc
Confidence 5544433333333333333333444443333333333222 112233334444444444444444444444432211 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 439 ANYTTVIDGYILRGKLVDAIGLFKK 463 (800)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~ 463 (800)
.....+..++...|+.++|..+..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4444444444444444444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-08 Score=98.78 Aligned_cols=328 Identities=10% Similarity=0.017 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-----CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---H
Q 003725 333 DKYVYSALISGYCKCGNIIKALSLHGEMTSI-GI-----KTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLD---Q 403 (800)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~ 403 (800)
++..|..-+.. ..|+..+-...+.+.... ++ .|...|..+.+.|-..|+++.|..+|++..+-...-- .
T Consensus 348 nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 348 NVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred cHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 44444443332 344555555555555432 11 1124555566666666666666666666555433211 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 404 VCYNVIMDALCKLGEVEEAVKLFNEMEGR-----------QIVP------DVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
.+|.....+-.+..+++.|+++++....- +.++ +...|...++.--..|-++....+|+.+++
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444445555555666666665554321 0011 233445555555556777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhccCccC
Q 003725 467 MGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNV-ITHNMIIEGLCT---SGRVKEARAFFDDDLKEKCLEN 542 (800)
Q Consensus 467 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 542 (800)
..+. ++.........+-.+.-++++.+++++=+..--.|+. ..|+..+.-+.+ ..+++.|..+|++.+. .+++.
T Consensus 506 Lria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 506 LRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 6543 2222222222334455567777777654444223332 233333333322 2456777777776555 33332
Q ss_pred -HHHHHHHH----HccCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---H
Q 003725 543 -YSAMVDGY----CEANHLEEAFQFFMTLSQRGFLM-RSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTT---Y 613 (800)
Q Consensus 543 -~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~ 613 (800)
-..+.-.| -+.|....|++++++....-... ....|+..+.-....=-+..-..+|++.++. -|+... .
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mc 661 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHH
Confidence 22222222 24466777777777754432111 1123444444333333344455667776665 244332 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 614 DKVIGALCLAGKIKWAHQVFDFLTR-HGLIPDLISYTMLIHGFCKLNCLREACN 666 (800)
Q Consensus 614 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~ 666 (800)
......-++.|.++.|+.++....+ .++..+...|.+.=..-.+.|+-+...+
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 3344556788999999999988776 4566678889888887889999443333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-09 Score=106.35 Aligned_cols=290 Identities=14% Similarity=0.075 Sum_probs=173.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 003725 236 IKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGI--PLNAFAYTAVIREFCQNS 313 (800)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g 313 (800)
..++-.....+++.+-.+.....|+..+...-+....+.....|+|+|..+|+++.+.+. -.|..+|+.++-.--...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 344445556666666666666666655555555555555566677777777777766531 123455555543322211
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 314 RLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKE 393 (800)
Q Consensus 314 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 393 (800)
+ +.++.+-...=-+--+.|...+.+-|+-.++.++|...|+...+.++....+|+.+..-|....+...|++.++.
T Consensus 314 k----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 314 K----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 111111111000123345556666666667777777777777776666667777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 394 FKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI 473 (800)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 473 (800)
..+..+. |-..|-.|..+|.-.+...-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|......|-. +.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 7665543 6666677777777777777777777776665332 6677777777777777777777777777665422 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 474 KAYNVLARGLAQYGSVRDALDCLKYMKKQ----G-VKP-NVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
..+..|.+.+-+.++.++|...+.+-++. | +.| .......|...+.+.+++++|..+..
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 66777777777777777777766665542 2 122 12223334555666777777766555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-09 Score=110.96 Aligned_cols=489 Identities=10% Similarity=0.004 Sum_probs=292.1
Q ss_pred HHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHH---HHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 003725 168 AYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQ---LLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLAR 244 (800)
Q Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 244 (800)
.+...+..++++.-+......+...+..++-.+-.. |...|+.+++ ++-......+-|....+.+++...
T Consensus 236 Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm----- 308 (799)
T KOG4162|consen 236 LWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM----- 308 (799)
T ss_pred HhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH-----
Confidence 344556777777777777766666555555444332 3344555555 222222211222222222211111
Q ss_pred hhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003725 245 FEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLR 324 (800)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (800)
-.+.++....+.-+...|..+.-++...|+++.+-+.|++....- .-....|+.+.-.+...|.-..|..+++.
T Consensus 309 -----~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 309 -----LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred -----HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 122233333345577778888888888888888888888877642 23456778888888888888888888887
Q ss_pred HHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHC--C---CCchHHHHHHHHHHHhc-----------CCHHH
Q 003725 325 MKQLRVTPDKYVYSALI-SGYC-KCGNIIKALSLHGEMTSI--G---IKTNYVVSVILKCLCQM-----------GKTSE 386 (800)
Q Consensus 325 m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~-----------g~~~~ 386 (800)
-....-.|+..+--.++ ..|. +-+..++++++-.+.... + .-+...+..+.-+|... ....+
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 76553334333333333 3332 346677777766666552 1 11223333333333321 12445
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 387 AIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
+++.+++..+.+..-....|. +.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+....
T Consensus 463 slqale~av~~d~~dp~~if~-lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFY-LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 677777777665442222222 3334667778888888888888876566888888888888888888888888887765
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHHH
Q 003725 467 MGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQ---------------------G-------VKPNVITHNMIIEGL 518 (800)
Q Consensus 467 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~ 518 (800)
.-.. |......-+..-..-++.++++.....+... | ......++..+..-.
T Consensus 542 E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 542 EFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred Hhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 3110 1111111111112234444444443333211 0 000111222111111
Q ss_pred HhcCCHHHHHHHHHHHHhccCcc--------CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 003725 519 CTSGRVKEARAFFDDDLKEKCLE--------NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGY 590 (800)
Q Consensus 519 ~~~g~~~~a~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (800)
...+........+...-....+. .|......+.+.+..++|...+.+.....+. ....|......+...|.
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHh
Confidence 10000000000000000001111 1667778888999999999888888776533 56677777788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 591 NNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQ--VFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIF 668 (800)
Q Consensus 591 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 668 (800)
.++|.+.|...+..+ +.++.+..++..++...|+..-|.. ++..+.+.++. +...|-.+...+-+.|+.++|.+.|
T Consensus 700 ~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHH
Confidence 999999999998876 4456678899999999999888888 99999998887 9999999999999999999999999
Q ss_pred HHHHHc
Q 003725 669 KDMKLR 674 (800)
Q Consensus 669 ~~m~~~ 674 (800)
....+.
T Consensus 778 ~aa~qL 783 (799)
T KOG4162|consen 778 QAALQL 783 (799)
T ss_pred HHHHhh
Confidence 988763
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=137.91 Aligned_cols=260 Identities=15% Similarity=0.164 Sum_probs=80.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003725 234 IVIKALCKLARFEEAFDVLNEMNKAG-VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQN 312 (800)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 312 (800)
.+...+.+.|++++|+++++...... ...+...|..+.......++++.|.+.++++...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45667777888888888885544332 23344555556666667778888888888877764 2255566666666 577
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ch-HHHHHHHHHHHhcCCHHHHHHH
Q 003725 313 SRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIK-TN-YVVSVILKCLCQMGKTSEAIKK 390 (800)
Q Consensus 313 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~~~~a~~~ 390 (800)
+++++|.++++..-+. .++...+..++..+...++++++.++++.+...... .+ ..+......+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7778887777665543 245566666777777777777777777776643322 22 4555666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003725 391 FKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHK 470 (800)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (800)
+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..|++..+...
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p- 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP- 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence 6666665443 45555666666666666666666666655442 22444555666666666666666666666655432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 471 PDIKAYNVLARGLAQYGSVRDALDCLKYMK 500 (800)
Q Consensus 471 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (800)
.|......+..++...|+.++|..+..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 255556666666666666666666655543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-11 Score=109.75 Aligned_cols=272 Identities=13% Similarity=0.091 Sum_probs=200.3
Q ss_pred cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCChHHH
Q 003725 242 LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG-IPL--NAFAYTAVIREFCQNSRLVEA 318 (800)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A 318 (800)
.++.++|+++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+++.+.+.++- .+- ...+...|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578899999999998854 2355667788899999999999999999988752 111 123456677888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 319 ESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN-----YVVSVILKCLCQMGKTSEAIKKFKE 393 (800)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~ 393 (800)
+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+. ..+..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988754 23455677888999999999999999998888776654 4556666667777888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 394 FKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI 473 (800)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 473 (800)
..+.+.. .+..--.+.+.+...|+++.|++.++.+.+.++.--..+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8776544 2333345667788888888888888888887655445667778888888888888888888887763 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 474 KAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCT 520 (800)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (800)
..-..+........-.+.|..++.+-+.+ +|+...+..++..-..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 33444444444455566666666666555 6888888888876544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=125.89 Aligned_cols=286 Identities=15% Similarity=0.120 Sum_probs=186.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcChhcHHHHHHHHHhcCChhHHHH-
Q 003725 209 EVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAG--VTLHGHNYSTIIQGLCENGRLDVGYD- 285 (800)
Q Consensus 209 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~- 285 (800)
+..+|...|..+... +..+......+.++|...+++++|+++|+.+.+.. ..-+..+|.+.+..+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777775443 22333455566777777777777777777776642 12245566666554322 11222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 286 LLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTP-DKYVYSALISGYCKCGNIIKALSLHGEMTSIG 364 (800)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (800)
+-+.+.+. -+..+.+|.++..+|.-.++.+.|++.|++..+. .| ...+|+.+.+-+.....+|+|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22333333 2456677777777777777778888777777764 34 56777777777777777777777777776655
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 365 IKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTV 444 (800)
Q Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 444 (800)
+..-.+|.-+...|.+.++.+.|.-.|+++.+.++. +.+....+...+-+.|+.|+|+++++++...+.. |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 544477777777777777777777777777766554 4555566666777777777777777777766544 44444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 445 IDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVK 505 (800)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 505 (800)
+..+...+++++|+..++++.+.-+ -+...|..+...|.+.|+.+.|+.-|..+.+...+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 5666667777777777777776522 24556667777777777777777777777765433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-08 Score=104.92 Aligned_cols=536 Identities=13% Similarity=0.126 Sum_probs=290.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHH
Q 003725 197 CNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYD----IVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQ 272 (800)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 272 (800)
+-.+.+.+.+.|-...|++.+.++... +..+..-+ -.+..|.-.-.++++.+.+..|...++..|..+...+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566777888888888888877766431 11111100 112234445567888888888888888888888777777
Q ss_pred HHHhcCChhHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH------------HhCC
Q 003725 273 GLCENGRLDVGYDLLLKWSEN-----------GIPLNAFAYTAVIREFCQNSRLVEAESVLLRM------------KQLR 329 (800)
Q Consensus 273 ~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~~ 329 (800)
-|+..=-.+...++|+..... ++..|+.+....|.+.|+.|++.+.+++.++- ++..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 777766667777777766542 24566777778889999999998888776542 1111
Q ss_pred ---------------CCCCHHHHH------HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHH------------HHH
Q 003725 330 ---------------VTPDKYVYS------ALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSV------------ILK 376 (800)
Q Consensus 330 ---------------~~p~~~~~~------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------l~~ 376 (800)
..+|.+.|. ..|..|...=++.+.-.+...+...+...+.+-+. +..
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 111221110 11222332222222222222222222222211122 222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHH---HHHH------HHhCCC------------
Q 003725 377 CLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGE-VEEAVK---LFNE------MEGRQI------------ 434 (800)
Q Consensus 377 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~------~~~~~~------------ 434 (800)
-.-+.++..-....++.....|.. |..++|+|...|...++ ++.-++ .++. ..++++
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 223444455555566666677776 78888998888887664 322111 1111 111110
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 435 -------VPDVANYTTVIDGYILRGKLVDAI-----------GLFKKMREMGH--KPDIKAYNVLARGLAQYGSVRDALD 494 (800)
Q Consensus 435 -------~~~~~~~~~li~~~~~~g~~~~A~-----------~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~ 494 (800)
.-....|......+.+..+.+-=. .+.++..+.++ ..|+...+.-+.+++..+-..+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 001122333333333443332211 22333333322 1255556666777888888888888
Q ss_pred HHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcC--
Q 003725 495 CLKYMKKQG--VKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRG-- 570 (800)
Q Consensus 495 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 570 (800)
+++++.-.. +..+...-+.|+-...+ .+.....++.+ .+..-+.+ .+.......+-+++|..+|++....+
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~-rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYIN-RLDNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHH-HhccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 888776322 11122222333322222 23333444444 22222111 22333444455555655555431110
Q ss_pred -------------------CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 571 -------------------FLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQ 631 (800)
Q Consensus 571 -------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 631 (800)
-.-.+..|+.+..+-.+.|.+.+|++-|-+. .|+..|.-++....+.|.+++-.+
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 0113455666666666666666666655432 355566667777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhH
Q 003725 632 VFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEV 711 (800)
Q Consensus 632 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 711 (800)
++..++++.-.|.+. +.||-+|++.++..+-.+++ .-|++.....+-+-|.. ++.+
T Consensus 1155 yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~---------------~~~y 1210 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFE---------------EKMY 1210 (1666)
T ss_pred HHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhh---------------hhhh
Confidence 766666554444443 35666667766666544332 24565555555555544 4556
Q ss_pred HHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccccCCCCH
Q 003725 712 VDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPTKKDV 791 (800)
Q Consensus 712 ~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 791 (800)
+.|.-++. +...|.-|...+...|.++.|.+.-+++- +..||..+--+|...+.+
T Consensus 1211 ~aAkl~y~-------------------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1211 EAAKLLYS-------------------NVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHHHHH-------------------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhh
Confidence 67776665 55668888888999999999988766653 566887777777777766
Q ss_pred HHHH
Q 003725 792 DKYL 795 (800)
Q Consensus 792 ~~A~ 795 (800)
..|.
T Consensus 1266 rlAQ 1269 (1666)
T KOG0985|consen 1266 RLAQ 1269 (1666)
T ss_pred hHHH
Confidence 6653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.8e-10 Score=103.04 Aligned_cols=405 Identities=11% Similarity=0.059 Sum_probs=229.2
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARF 245 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 245 (800)
+.-+...+++..|+.+++--...+......+-..+...+...|++++|+..+.-+.+.. .++...+..+...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44456668899999988876655433333445567778899999999999999887654 46666666676666678999
Q ss_pred hHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003725 246 EEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRM 325 (800)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (800)
.+|..+-+... .++-....|.....+.|+-++-..+.+.+... ..--.+|.......-++.+|++++..+
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988866532 24445556666677888888877777766553 233344555555566789999999998
Q ss_pred HhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 326 KQLRVTPDKYVYSA-LISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQV 404 (800)
Q Consensus 326 ~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 404 (800)
...+ |+-...+. +.-+|.+..-++-+.++++-....-+..+.+.+..+....+.=.-..|..-.+.+...+-..
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 8642 44444443 34567788888888888888777654444444444443333323333333344444332211
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003725 405 CYNVIMDALCKL-----GEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVL 479 (800)
Q Consensus 405 ~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 479 (800)
| -.+.-.++. ++-+.|++++-.+.+. .| ..--.|+-.|.+++++.+|..+.+++.-. .|-......+
T Consensus 253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgv 324 (557)
T KOG3785|consen 253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGV 324 (557)
T ss_pred -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHH
Confidence 1 112222322 2346777777766654 22 23345666788888888888887766421 2333322222
Q ss_pred HHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcc---CccCHHHHHH
Q 003725 480 ARGLAQYG-------SVRDALDCLKYMKKQGVKPNVIT-HNMIIEGLCTSGRVKEARAFFDDDLKEK---CLENYSAMVD 548 (800)
Q Consensus 480 ~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~l~~ 548 (800)
. +...| ....|.+.|...-..+..-|... -.++..++.-.-++++...+++ .++.- +..--..+.+
T Consensus 325 v--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yln-Si~sYF~NdD~Fn~N~AQ 401 (557)
T KOG3785|consen 325 V--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLN-SIESYFTNDDDFNLNLAQ 401 (557)
T ss_pred H--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcchhhhHHHH
Confidence 2 22222 34455555555544443333211 1233344444455666666555 33321 1111223455
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 003725 549 GYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKL 597 (800)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 597 (800)
+++..|.+.+|.++|-++....+.-+......+.++|...+.++-|.++
T Consensus 402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 5666666666666665554433332222223333444455555544443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-11 Score=124.83 Aligned_cols=287 Identities=13% Similarity=0.092 Sum_probs=229.5
Q ss_pred ChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhHHHHH
Q 003725 174 MFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGF--SLNQFTYDIVIKALCKLARFEEAFDV 251 (800)
Q Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 251 (800)
+.++|+..|..+...- .-..+....+..+|...+++++|.++|+.+.+... ..+..+|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 5678999999955543 23346777889999999999999999999986531 13677888887766442 22222
Q ss_pred H-HHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003725 252 L-NEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRV 330 (800)
Q Consensus 252 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 330 (800)
+ +.+.+.. +..+.+|..+..+|.-+++.+.|++.|++..+.+ +-...+|+.+..-+.....++.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 2 3333332 3467899999999999999999999999999975 447789999999999999999999999998863
Q ss_pred CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 331 TPDKY---VYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYN 407 (800)
Q Consensus 331 ~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 407 (800)
|.. .|-.|.-.|.+.++++.|.-.|++..+.++........+...+.+.|+.++|+.+++++...... |+..--
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 444 45556788999999999999999999998888899999999999999999999999999988766 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 408 VIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI 473 (800)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 473 (800)
.-+..+...+++++|+..++++++.- +-+...|..+...|.+.|+.+.|+.-|.-+.+..+++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 45666777899999999999998862 225677888889999999999999999998887655443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-10 Score=108.05 Aligned_cols=291 Identities=15% Similarity=0.090 Sum_probs=162.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (800)
.|+|.+|.++..+-.+.+..|...+.....+.-+.|+.+.+-.++.+..+....++...+-+........|++..|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555555555544444455555555555555555555555554433334444445555555556666666555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 427 NEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPD-------IKAYNVLARGLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 427 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 499 (800)
+.+.+.+.. ..........+|.+.|++.....++.++.+.|.-.+ ..+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555554433 445555555666666666666666666655554332 234555555555555555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHH
Q 003725 500 KKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCC 579 (800)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 579 (800)
.+. .+.++....+++.-+..+|+.++|.++..+.++.. ..+. .
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--------------------------------~D~~----L 298 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--------------------------------WDPR----L 298 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------------------------------cChh----H
Confidence 433 24445555555666666666666666666444433 2211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003725 580 KLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659 (800)
Q Consensus 580 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 659 (800)
...-.+..-++...-++..+.-.+.. +.++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|
T Consensus 299 ~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 299 CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLG 375 (400)
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcC
Confidence 11112223344444444444444332 34446677788888888888888888886665 3567888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCC
Q 003725 660 CLREACNIFKDMKLRGIKP 678 (800)
Q Consensus 660 ~~~~A~~~~~~m~~~g~~p 678 (800)
+..+|.+.+++.+..-..|
T Consensus 376 ~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 376 EPEEAEQVRREALLLTRQP 394 (400)
T ss_pred ChHHHHHHHHHHHHHhcCC
Confidence 8888888877766433333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-09 Score=98.04 Aligned_cols=452 Identities=11% Similarity=0.039 Sum_probs=259.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCCh
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRL 280 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 280 (800)
+.-+....++..|..+++--...+-+-...+-..+..++...|++++|...|..+.+.. .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44566677888888888766544322222233334455668899999999998887754 56777777787777788888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 281 DVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEM 360 (800)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 360 (800)
.+|..+.....+ ++-.-..+.....+.++-++-..+.+.+.. ...--.+|.......-.+++|++++...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888877654333 344444555666667776666665555543 1223334455544555788999999988
Q ss_pred HHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003725 361 TSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVAN 440 (800)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 440 (800)
...+...-..-..+.-+|.+..-++-+.++++-....-+. ++..-|.......+.=+-..|++-.+++...+-. .
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~--- 252 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E--- 252 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---
Confidence 8765443333344556777888888888887776654322 3444444443333332223344444444332111 0
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 441 YTTVIDGYILR-----GKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMII 515 (800)
Q Consensus 441 ~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 515 (800)
| ..+.-+++. ..-+.|++++-.+.+. -| .+-..|+-.+.+.++.++|..+.+++. |.++.-|..-.
T Consensus 253 ~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKg 323 (557)
T KOG3785|consen 253 Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKG 323 (557)
T ss_pred c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHH
Confidence 1 122223332 2346677776666543 22 233345556778888888888777653 22222222111
Q ss_pred HHHHhc-------CCHHHHHHHHHHHHhcc-----CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 003725 516 EGLCTS-------GRVKEARAFFDDDLKEK-----CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLT 583 (800)
Q Consensus 516 ~~~~~~-------g~~~~a~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 583 (800)
-.+... ..+.-|..+|. ...+. .++.-..+...+.-..++++++-.+..+..- +.-|......+..
T Consensus 324 vv~aalGQe~gSreHlKiAqqffq-lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQ 401 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQ-LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQ 401 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHH-HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHH
Confidence 122222 23455666666 44322 2333566666666666777777666665543 2334445556777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLIS-YTMLIHGFCKLNCLR 662 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~ 662 (800)
+.+..|++.+|.++|-++....++.+..-...|.++|.+.|.++.|++++-.+- ...+..+ ...+.+.|.+.+.+-
T Consensus 402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887776554433333333455667778888877766554332 1122222 233445566777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH
Q 003725 663 EACNIFKDMKLRGIKPDVVLYT 684 (800)
Q Consensus 663 ~A~~~~~~m~~~g~~pd~~~~~ 684 (800)
-|.+.|+.+.. ..|+...|.
T Consensus 479 yaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 479 YAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHhhhHHHc--cCCCccccC
Confidence 77777776654 356655553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-07 Score=98.68 Aligned_cols=623 Identities=12% Similarity=0.091 Sum_probs=355.9
Q ss_pred ChHHHHHHHHhc-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCC-CchHHHHHHHH
Q 003725 72 STSEVVNKLDSF-RKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMND-LNFEVIDLFEA 149 (800)
Q Consensus 72 ~~~~v~~~l~~~-~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~ 149 (800)
.+++++..|... +-+|+.|++|...+.+.. +....++.+..++......+.+-+.+.+++..+.+ .+.--..+++-
T Consensus 509 yTPdymflLq~l~r~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~ 586 (1666)
T KOG0985|consen 509 YTPDYMFLLQQLKRSSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEM 586 (1666)
T ss_pred CCccHHHHHHHHHccChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHH
Confidence 455565555443 358999999998887542 24455677888888777788888888887766332 12222223322
Q ss_pred -----------HhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHH----HHHHHHHHcCChhHHH
Q 003725 150 -----------LSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCN----FFMNQLLKCGEVDMVL 214 (800)
Q Consensus 150 -----------~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~ 214 (800)
+-..+.. +..-+..+...|-++|-+++|++.|..+.... .....-+ --+..|.-.-.++.+.
T Consensus 587 NL~~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIK--R~vVhth~L~pEwLv~yFg~lsve~s~ 663 (1666)
T KOG0985|consen 587 NLVHAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIK--RVVVHTHLLNPEWLVNYFGSLSVEDSL 663 (1666)
T ss_pred HhccchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHH--HHHHHhccCCHHHHHHHHHhcCHHHHH
Confidence 2111111 11226678889999999999998887655321 1111111 1123445555778888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----------CCCcChhcHHHHHHHHHhcCChhHH
Q 003725 215 VLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKA-----------GVTLHGHNYSTIIQGLCENGRLDVG 283 (800)
Q Consensus 215 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a 283 (800)
+.+..|....+..|..+..-+..-|+..=..+..+++|+..... ++.-|+.+.--.|.+.|+.|++.+.
T Consensus 664 eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEv 743 (1666)
T KOG0985|consen 664 ECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEV 743 (1666)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHH
Confidence 88888887777777777777777777666666777777765432 2455666777788888888888877
Q ss_pred HHHHHHH------------HhC---------------CCCCCHHHHH------HHHHHH---------------------
Q 003725 284 YDLLLKW------------SEN---------------GIPLNAFAYT------AVIREF--------------------- 309 (800)
Q Consensus 284 ~~~~~~~------------~~~---------------~~~~~~~~~~------~li~~~--------------------- 309 (800)
.++.++- ++. |+.++...|. ..|..|
T Consensus 744 ERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC 823 (1666)
T KOG0985|consen 744 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC 823 (1666)
T ss_pred HHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC
Confidence 6653321 111 1111111110 011111
Q ss_pred -------------------------HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHH--------
Q 003725 310 -------------------------CQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN-IIKALS-------- 355 (800)
Q Consensus 310 -------------------------~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~-------- 355 (800)
-+.+++.--...++...+.|+. |..++++|...|...++ ++.-++
T Consensus 824 ~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~ 902 (1666)
T KOG0985|consen 824 SEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSK 902 (1666)
T ss_pred cHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhh
Confidence 1222333333455555666754 88899999888876654 222211
Q ss_pred HHHHH-HHCCCC--------------------chHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHHCCC--CC
Q 003725 356 LHGEM-TSIGIK--------------------TNYVVSVILKCLCQMGKTSEAI-----------KKFKEFKSMGI--FL 401 (800)
Q Consensus 356 ~~~~~-~~~~~~--------------------~~~~~~~l~~~~~~~g~~~~a~-----------~~~~~~~~~~~--~~ 401 (800)
+..+. .++++. .+..|....+.+....+.+--. .+.++....++ ..
T Consensus 903 vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~ 982 (1666)
T KOG0985|consen 903 VVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQ 982 (1666)
T ss_pred HHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccC
Confidence 11111 111110 1134445555555555544322 23344444433 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------
Q 003725 402 DQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQI--VPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGH---------- 469 (800)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------- 469 (800)
|+...+..+.++...+-..+-.++++++.-.+. .-+...-|.|+-...+. +.....++.+++-.-..
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 555666778888888888999999988864321 11122223333333322 22333333333322110
Q ss_pred -------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003725 470 -------------KPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK 536 (800)
Q Consensus 470 -------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 536 (800)
..+..+.+.|+. .-+..+.|.++-++. ..+.+|+.+..+-...|.+.+|++.| ++
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSy---ik 1129 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESY---IK 1129 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHH---Hh
Confidence 112333333332 123344443333322 24456777777777777777776654 34
Q ss_pred ccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 537 EKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKV 616 (800)
Q Consensus 537 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 616 (800)
..++.+|...++...+.|.+++-.+.+....++...|. .-..++-+|++.++..+-.+++. -|+..-...+
T Consensus 1130 adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA-------GPNVANIQQV 1200 (1666)
T ss_pred cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHH
Confidence 55666788888888888888887777766666554433 33466777777777665544433 4666667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCC
Q 003725 617 IGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKR 696 (800)
Q Consensus 617 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~ 696 (800)
.+-|...|.++.|.-++. ++..|..|...+...|.+..|...-++. .+..||.-+-.+|...+.
T Consensus 1201 Gdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E- 1264 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE- 1264 (1666)
T ss_pred hHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh-
Confidence 777888888887777665 4445777888888888888887766654 256788888888876221
Q ss_pred CCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 697 GSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 697 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
+.-| .|-...+.. ...-..-|+..|...|.++|-+.+++..+
T Consensus 1265 --------------FrlA-----QiCGL~iiv----------hadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1265 --------------FRLA-----QICGLNIIV----------HADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred --------------hhHH-----HhcCceEEE----------ehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 1111 111111111 33445567777778888888887777665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-10 Score=105.54 Aligned_cols=284 Identities=12% Similarity=0.042 Sum_probs=157.2
Q ss_pred cCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 003725 172 ERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDV 251 (800)
Q Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 251 (800)
.|+|..|.+...+..+.+..| ...|..-+.+--..|+.+.+-.++.+..+..-.++...+-...+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766655332 3344455556666777777777777776642234555566666667777777777777
Q ss_pred HHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 003725 252 LNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNA-------FAYTAVIREFCQNSRLVEAESVLLR 324 (800)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 324 (800)
++++.+.+ +.+........+.|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 335666777777777777777777777777776644333 2455555554444444443344444
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 325 MKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQV 404 (800)
Q Consensus 325 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 404 (800)
.... ...++..-.+++.-+...|+.++|.++.++..+.+.++. -...-.+.+.++.+.-++..++..+..+. ++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Chh
Confidence 4322 223444455556666666666666666666665555444 11122233344444444444443333222 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 405 CYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKM 464 (800)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 464 (800)
.+.+|...|.+.+.|.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|..++++.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4444555555555555555555544433 344555555555555555555555544444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-08 Score=101.49 Aligned_cols=130 Identities=13% Similarity=0.081 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVV-LYTILCDAY 690 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~ 690 (800)
.|......+.+.++.++|...+.++....+. ....|......+...|+.++|.+.|...+. +.|+.+ ...++...+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 4556677788999999999999888875433 667777777888999999999999999986 678755 556666777
Q ss_pred hccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 691 SKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
...|. ....+..-++.++.+.+.. +...|-.++..+-+.|+.++|.+.|+-..+
T Consensus 729 le~G~-------------~~la~~~~~L~dalr~dp~-----------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 729 LELGS-------------PRLAEKRSLLSDALRLDPL-----------NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhCC-------------cchHHHHHHHHHHHhhCCC-----------CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 66542 2344444588888876554 999999999999999999999999998875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-08 Score=100.89 Aligned_cols=422 Identities=14% Similarity=0.115 Sum_probs=195.6
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (800)
+++...+++.+.+++. ..-...+.....-.++..|+-++|..........+ .-+.+.|..+.-.+....++++|.+.|
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4444444444444442 12223333333333444444444444444444332 223344444444444444455555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 003725 323 LRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMG-IFL 401 (800)
Q Consensus 323 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 401 (800)
......+ +.|...+.-+.-.-+..++++.....-....+..+.....|..++.++.-.|+...|..+++...+.. ..|
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 5544432 12333344333334444444444444444444332222444444444444455555555554444332 122
Q ss_pred CHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003725 402 DQVCYNVIM------DALCKLGEVEEAVKLFNEMEGRQIVPDV-ANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIK 474 (800)
Q Consensus 402 ~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 474 (800)
+...|.... ....+.|..++|.+.+..-... +. |. ..-.+-...+.+.+++++|..++..++.. .||..
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 333222111 1233455555555555544322 11 22 12222334455666666666666666654 34444
Q ss_pred HHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhccCccCHHHHHHHHH
Q 003725 475 AYNVLARGLA-QYGSVRDAL-DCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKE-ARAFFDDDLKEKCLENYSAMVDGYC 551 (800)
Q Consensus 475 ~~~~l~~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~l~~~~~ 551 (800)
.|...+..+. +-.+.-++. .+|...-+. .|.......+--......++.+ ..+++...+..+.+..+..+...|-
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 4444333332 222222222 334333322 2211111111111111122222 2222332333333444444444443
Q ss_pred ccCCHHHHHHHHHHHH----HcCC----------CCChh--cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHH
Q 003725 552 EANHLEEAFQFFMTLS----QRGF----------LMRSE--SCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKT-TYD 614 (800)
Q Consensus 552 ~~g~~~~A~~~~~~~~----~~~~----------~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 614 (800)
.....+-..++...+. ..|. .|... ++..+...+-..|+++.|..+++.++.. .|+.+ .|.
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~ 409 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYL 409 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHH
Confidence 3222221111111111 1110 22322 3344566677888999999998888764 34433 455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003725 615 KVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGI 676 (800)
Q Consensus 615 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 676 (800)
.=.+.+.+.|+++.|...+++..+.+.. |...-.--+.-..++++.++|.++.......|.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5567888899999999999988876443 555444555666788899999998888887764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-08 Score=102.29 Aligned_cols=162 Identities=9% Similarity=-0.020 Sum_probs=82.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 003725 162 SDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK 241 (800)
Q Consensus 162 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 241 (800)
|...++.| ..+++...++..+.+.+ +++....+.....-.+...|+-++|......-...++ .+.+-|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhh
Confidence 33444433 33556666665555555 2233344444444445555666666655555544322 233345544444444
Q ss_pred cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003725 242 LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESV 321 (800)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 321 (800)
..++++|++.|..+...+ +.|...+.-+.-.-.+.|+++.....-..+.+.. +.....|..+..++.-.|++..|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655544 2345555555555555555555555554444431 22334455555555555666666666
Q ss_pred HHHHHhC
Q 003725 322 LLRMKQL 328 (800)
Q Consensus 322 ~~~m~~~ 328 (800)
+++..+.
T Consensus 166 l~ef~~t 172 (700)
T KOG1156|consen 166 LEEFEKT 172 (700)
T ss_pred HHHHHHh
Confidence 5555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-11 Score=108.29 Aligned_cols=237 Identities=14% Similarity=0.083 Sum_probs=201.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003725 437 DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIE 516 (800)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 516 (800)
|-.--+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..|-++|.+..++..|+.++.+-.+. ++.+........+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3344467889999999999999999988876 577888999999999999999999999998886 4555555566778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 517 GLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 517 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
.+...++.++|.++++..++.. +++....+...|.-.++++.|+..|+++++-|.. ++..|..+.-+|...+++|-+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 8888999999999999766643 4555777778888899999999999999999987 889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 595 FKLLDTMLKLDAKPSK--TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMK 672 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 672 (800)
+.-|++.+.....|+. .+|-.+.......||+..|.+.|...+..+.. ....+|.|.-.-.+.|+.++|..+++...
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999999877555553 35777888888999999999999999987666 77889999888899999999999999988
Q ss_pred HcCCCCCH
Q 003725 673 LRGIKPDV 680 (800)
Q Consensus 673 ~~g~~pd~ 680 (800)
+ +.|+.
T Consensus 457 s--~~P~m 462 (478)
T KOG1129|consen 457 S--VMPDM 462 (478)
T ss_pred h--hCccc
Confidence 6 46764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-08 Score=104.59 Aligned_cols=292 Identities=15% Similarity=0.161 Sum_probs=206.3
Q ss_pred HHHHHHccCChHHHHHHHHHccCCCCccC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhc
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRPGFVWS-KFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYD-IVIKALCKL 242 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~ 242 (800)
....+...|++++|++.+..-... .+| ..........+.+.|+.++|..++..+.+++ |+...|. .+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 344567789999999999875543 344 4456677889999999999999999999875 5555554 444444222
Q ss_pred -----CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 003725 243 -----ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLD-VGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLV 316 (800)
Q Consensus 243 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 316 (800)
...+...++|+++...- |.......+.-.+.....+. .+..++..+...|+| .+|+.+-..|.......
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 25677788888887653 44444333333333322333 344566777778854 35666666666555555
Q ss_pred HHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHh
Q 003725 317 EAESVLLRMKQL----R----------VTPDK--YVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQ 380 (800)
Q Consensus 317 ~A~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (800)
-..+++...... + -+|.. .++..+...|...|++++|++++++.++..+.....+..-.+.+-+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 555666555422 1 12333 3446667888899999999999999999876666888999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHhcC
Q 003725 381 MGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVAN------Y--TTVIDGYILRG 452 (800)
Q Consensus 381 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~g 452 (800)
.|++.+|.+.++.....+.. |..+-+-.+..+.+.|++++|.+++......+..|-... | .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988766 777777888889999999999999999877654332221 1 33456888999
Q ss_pred CHHHHHHHHHHHHH
Q 003725 453 KLVDAIGLFKKMRE 466 (800)
Q Consensus 453 ~~~~A~~~~~~~~~ 466 (800)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999888777654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.1e-08 Score=102.29 Aligned_cols=567 Identities=11% Similarity=-0.016 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH--HhHHHHH
Q 003725 159 YRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQ--FTYDIVI 236 (800)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li 236 (800)
..+|..|...|+...+..+|.+.|+...+.+ ..+..++....+.|++..+++.|..+.-...+.. +--. ..|..+.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcc
Confidence 4578889999998889999999999998876 4577888999999999999999999843332221 1111 1233344
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 003725 237 KALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLV 316 (800)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 316 (800)
-.|.+.++..+|+.-|+...+.. +.|...|..+..+|.+.|++..|.++|.++.... |.+...-.-.....+..|.+.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHH
Confidence 55677889999999999988865 3377899999999999999999999999888764 223333333444567789999
Q ss_pred HHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCch-HHHHHHHHHHHhcC
Q 003725 317 EAESVLLRMKQL------RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI-------GIKTN-YVVSVILKCLCQMG 382 (800)
Q Consensus 317 ~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g 382 (800)
+|+..+..+... +-.--..++..+...+...|-..+|.+.+++.++. ....+ ..|..+..
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd------ 721 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD------ 721 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH------
Confidence 999988877642 11112234444444444555555555555554331 11111 22222211
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------
Q 003725 383 KTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEV---E---EAVKLFNEMEGRQIVPDVANYTTVIDGYIL------ 450 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~------ 450 (800)
|..+|.... .. .|+.....++..-.-+.+.. | -+.+.+-.-.+ ...+..+|..++..|.+
T Consensus 722 ----ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 722 ----ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred ----HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcC
Confidence 222222222 00 11221111111111122211 1 01111111111 11134445555544443
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 451 --RGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEAR 528 (800)
Q Consensus 451 --~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 528 (800)
..+...|+..+++.++.. ..+..+|+.|.-. ...|++.-+.-.|-+-.... +....+|..+.-.+.+..+++.|.
T Consensus 794 et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhh
Confidence 122346677777766542 2256666666544 44456655555554444432 445566666666677778888888
Q ss_pred HHHHHHHhccCccC---HHHHHHHHHccCCHHHHHHHHHHH--H--HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 529 AFFDDDLKEKCLEN---YSAMVDGYCEANHLEEAFQFFMTL--S--QRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM 601 (800)
Q Consensus 529 ~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 601 (800)
..|. +...-+|.. |..........|+.-++..+|.-- . ..|-.++...+.........+|+.++-+...+.+
T Consensus 871 ~af~-~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFS-SVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHH-hhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 8887 554443333 554444455667777777666541 1 2233334444444444455556655544333332
Q ss_pred HhC---------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHH----HHHHHHHhcCCHHHHHHH
Q 003725 602 LKL---------DAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR-HGLIPDLISYT----MLIHGFCKLNCLREACNI 667 (800)
Q Consensus 602 ~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~----~li~~~~~~g~~~~A~~~ 667 (800)
-.. +.+.+...|...+...-+.+.+..|.....++.. ....-|...|+ .+.+.++..|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 211 3344555666666666677777777666665442 00112344444 334455666777766554
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHC-CCCchhhhccCCCCCcchHHHH
Q 003725 668 FKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEM-EISPDVMLGQGLEPDTVCYTVL 746 (800)
Q Consensus 668 ~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~l 746 (800)
+..... ..|......-+..+. .+++.++.+.|++.... +.+.+ -.+..+.+
T Consensus 1030 ~~~~~~---evdEdi~gt~l~lFf----------------kndf~~sl~~fe~aLsis~se~d---------~vvLl~kv 1081 (1238)
T KOG1127|consen 1030 SWKEWM---EVDEDIRGTDLTLFF----------------KNDFFSSLEFFEQALSISNSESD---------KVVLLCKV 1081 (1238)
T ss_pred hcccch---hHHHHHhhhhHHHHH----------------HhHHHHHHHHHHHHhhhcccccc---------hhhhhHHH
Confidence 433221 122222222222222 35677788888777652 11211 23455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 747 IARLCYTNNLVDALIVFDEMIDRGLEPNIV 776 (800)
Q Consensus 747 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 776 (800)
+.+....|.-+.|..++-+.... -+|+..
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~~l-s~~~~~ 1110 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVKSL-SKVQAS 1110 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHHHh-Cccchh
Confidence 77777778888888777666543 244443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-07 Score=92.97 Aligned_cols=579 Identities=13% Similarity=0.096 Sum_probs=307.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHH
Q 003725 84 RKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSD 163 (800)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (800)
.|+.+.|.+-..-++ +-.+|..+++.+.+..+.+-|.--+-.|-... +... +..-...+.... .
T Consensus 741 iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR---gaRA---lR~a~q~~~e~e----a 804 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR---GARA---LRRAQQNGEEDE----A 804 (1416)
T ss_pred eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh---hHHH---HHHHHhCCcchh----h
Confidence 455566655444443 45688899999988888877766665553321 1111 111111111111 1
Q ss_pred HHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 003725 164 AMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLA 243 (800)
Q Consensus 164 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 243 (800)
.+...-...|++++|..+|.+..+.+ .|=..|-..|.+++|.++.+.-.+. .=..||..-..-+-..+
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARR 872 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhc
Confidence 22223346689999999998877643 3344567789999999887754332 12346666666667788
Q ss_pred ChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003725 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLL 323 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (800)
+.+.|++.|++... +--.++..|.. +.....++.+.+. +...|.-....+-..|+.+.|+.+|.
T Consensus 873 Di~~AleyyEK~~~----hafev~rmL~e------~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGV----HAFEVFRMLKE------YPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred cHHHHHHHHHhcCC----hHHHHHHHHHh------ChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHH
Confidence 89999999887432 11112221111 2222222222222 34556666666677888888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 003725 324 RMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMG----- 398 (800)
Q Consensus 324 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 398 (800)
..+. |-++++..|-.|+.++|-++-++-.. ..+...+.+.|-..|++.+|..+|.+.....
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~esgd-----~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEESGD-----KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhccc-----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 56677888888888888888765322 1556677888888888888888887654211
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHc
Q 003725 399 ---IFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKK--------MREM 467 (800)
Q Consensus 399 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~ 467 (800)
-..+...+|.. ......+.-.|-++|++.-. -+...+..|.+.|.+.+|+++--+ ++..
T Consensus 1003 cKEnd~~d~L~nla--l~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1003 CKENDMKDRLANLA--LMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHhcCHHHHHHHHH--hhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 00111112211 11112233344445544321 012234457777877777765321 1222
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccC-cc--
Q 003725 468 --GHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK-EKC-LE-- 541 (800)
Q Consensus 468 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~-- 541 (800)
....|+...+.-..-++...+++.|..++-..++. ...+ .+|+..++.-..++-+ ++. .++ ..
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Al-qlC~~~nv~vtee~aE-~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGAL-QLCKNRNVRVTEEFAE-LMTPTKDDMPNE 1141 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHH-HHHhcCCCchhHHHHH-hcCcCcCCCccH
Confidence 22346666777777777778888888777665532 1122 2344444444444444 332 221 11
Q ss_pred -----CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHH-------------HHHHHHHh
Q 003725 542 -----NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAF-------------KLLDTMLK 603 (800)
Q Consensus 542 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-------------~~~~~~~~ 603 (800)
....+...+.++|.+..|-+-|.+.-.+ ...++++.+.|+.++-. -.-..+..
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQt 1212 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQT 1212 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhh
Confidence 1556777788888888887777554322 23355666666654411 01111222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003725 604 LDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLY 683 (800)
Q Consensus 604 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 683 (800)
.+.+.++.+...++.-|.+..-++.--.+++..... .+..|..+-. ..|-.++|.+.+.++..++ -....+
T Consensus 1213 lDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~--~~~t~l 1283 (1416)
T KOG3617|consen 1213 LDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKN--MSTTGL 1283 (1416)
T ss_pred cccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhc--chHHHH
Confidence 345566666666665555554444444444433322 1222222111 1344556666666655432 112223
Q ss_pred HHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 003725 684 TILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVF 763 (800)
Q Consensus 684 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 763 (800)
+.|-.-.+..-..-. .... -.++..+...-...|.+..+.| .+.+-...|..||..|....+|..|-..+
T Consensus 1284 ~~Lq~~~a~vk~~l~--~~q~--~~eD~~~~i~qc~~lleep~ld------~~Ir~~~~~a~lie~~v~~k~y~~AyRal 1353 (1416)
T KOG3617|consen 1284 DALQEDLAKVKVQLR--KLQI--MKEDAADGIRQCTTLLEEPILD------DIIRCTRLFALLIEDHVSRKNYKPAYRAL 1353 (1416)
T ss_pred HHHHHHHHHHHHHHH--HHHH--hhhhHHHHHHHHHHHhhCcCCC------CcchhHHHHHHHHHHHHhhhhccHHHHHH
Confidence 333222222000000 0000 0112223333333333333222 23335568999999999999999999999
Q ss_pred HHHHHC
Q 003725 764 DEMIDR 769 (800)
Q Consensus 764 ~~~~~~ 769 (800)
++|..+
T Consensus 1354 ~el~~k 1359 (1416)
T KOG3617|consen 1354 TELQKK 1359 (1416)
T ss_pred HHHhhc
Confidence 999865
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=106.86 Aligned_cols=231 Identities=11% Similarity=0.006 Sum_probs=178.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 003725 163 DAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKL 242 (800)
Q Consensus 163 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 242 (800)
..+.++|.+.|.+.+|.+.|+..++. .|.+.+|..|.++|.+..+.+.|+.++.+-.+. ++-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46788899999999999999888776 467788888999999999999999999988765 334444445577788888
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (800)
++.++|.++|+...+.. ..++.....+...|.-.++.+.|+.+++++.+.|. .++..|+.+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988865 44677777778888888899999999999998884 47778888888888888888888888
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 323 LRMKQLRVTPD--KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMG 398 (800)
Q Consensus 323 ~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 398 (800)
++....--.|+ ...|-.+.......||+..|.+.|+-....+......++.+.-.-.+.|++++|..+++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88776543343 34566667777777888888888887777665555666666666667777777777776665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.4e-08 Score=96.63 Aligned_cols=439 Identities=14% Similarity=0.108 Sum_probs=241.5
Q ss_pred HHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHH--HHHHHH--
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDI--VIKALC-- 240 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~-- 240 (800)
=+..+...|++++|.+...++...+ +-+..++..-+.++++.+++++|+.+.+.-.. ..+++. +=++||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 3556778899999999999999876 45667777778889999999999955543221 112222 345666
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPL-NAFAYTAVIREFCQNSRLVEAE 319 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 319 (800)
+.+..++|+..++-.. ..+..+...-...+.+.|++++|+.+++.+.+.+... +...-..++..-. .-.+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH
Confidence 7899999999998322 1234467777888999999999999999998875321 1111122221111 01111
Q ss_pred HHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCC-------CCc--------hHHHHHHHHHHHhc
Q 003725 320 SVLLRMKQLRVTPDKYVYSAL---ISGYCKCGNIIKALSLHGEMTSIG-------IKT--------NYVVSVILKCLCQM 381 (800)
Q Consensus 320 ~~~~~m~~~~~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~-------~~~--------~~~~~~l~~~~~~~ 381 (800)
+ +......| ..+|..+ ...++..|++.+|+++++...+.+ -.. +.+-..+..++-..
T Consensus 163 -~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 -L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred -H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 22222233 2234333 455678899999999998883221 111 13344566677788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCH-H-HHHHHHHHHHhCCC----------CCCHHHH-HHH
Q 003725 382 GKTSEAIKKFKEFKSMGIFLDQ----VCYNVIMDALCKLGEV-E-EAVKLFNEMEGRQI----------VPDVANY-TTV 444 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~-~-~A~~~~~~~~~~~~----------~~~~~~~-~~l 444 (800)
|+.++|..++....+..+. |. ..-|.|+.+ ....++ + .++..++....... .-..... +.+
T Consensus 238 Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred cchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877653 32 222333322 111111 1 12222222211100 0011111 222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003725 445 IDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ--YGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSG 522 (800)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 522 (800)
+..| .+.-+.+.++-...... .| ...+.+++..+.+ ......+..++...-+....-...+....+......|
T Consensus 316 L~l~--tnk~~q~r~~~a~lp~~--~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 316 LALF--TNKMDQVRELSASLPGM--SP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHH--hhhHHHHHHHHHhCCcc--Cc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 2222 33445555544433321 23 3344445444332 2346777788777766532223455666677788899
Q ss_pred CHHHHHHHHH--------HHHhcc-CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCChh----cHHHHHHHHHh
Q 003725 523 RVKEARAFFD--------DDLKEK-CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGF--LMRSE----SCCKLLTNLLI 587 (800)
Q Consensus 523 ~~~~a~~~~~--------~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~----~~~~l~~~~~~ 587 (800)
+++.|.+++. ....-. .+....++...|.+.++-+.|..++.+....-. .+... .+......-.+
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 9999999888 222222 233366777777787777777777666543210 01111 12222222334
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003725 588 EGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQV 632 (800)
Q Consensus 588 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 632 (800)
.|+.++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+
T Consensus 471 ~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred cCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 455555555555555543 34444455555554432 33444333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-07 Score=94.33 Aligned_cols=450 Identities=14% Similarity=0.111 Sum_probs=243.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc
Q 003725 198 NFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 198 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (800)
-+=++.+...|++++|.+....+...+ +.+...+..-+.++.+.+.+++|+.+.+.-... ..+..-+..=+.+..+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 334667788899999999999998875 456667777777889999999999666543211 11111112234445578
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 278 GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTP-DKYVYSALISGYCKCGNIIKALSL 356 (800)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 356 (800)
+..|+|+..++-.. +.+..+...-.+.+.+.|++++|..+|+.+.+.+..- |...-..++.+- - +...
T Consensus 93 nk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a---~l~~ 161 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----A---ALQV 161 (652)
T ss_pred ccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----H---hhhH
Confidence 99999998887222 2234466667788889999999999999998764321 111111111111 0 1111
Q ss_pred HHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CC-CCHH-----HHHHHHHHHHhcCCH
Q 003725 357 HGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMG--------IF-LDQV-----CYNVIMDALCKLGEV 419 (800)
Q Consensus 357 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~-~~~~-----~~~~li~~~~~~g~~ 419 (800)
..+......|. ..+....-.+...|++.+|+++++.....+ .. -+.. +-.-+.-++-..|+.
T Consensus 162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 01222222333 334444556667889999999888773211 00 0000 111233345566777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCH-H-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 420 EEAVKLFNEMEGRQIVPDVANYTTVIDGYIL---RGKL-V-DAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALD 494 (800)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~-~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 494 (800)
++|..++....+.++. |..+.....+-+.. ..++ + .++..++..... ..+.+..
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~--------------------l~~~~l~ 299 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK--------------------LAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHH--------------------hHHHHHH
Confidence 7777777777666443 43322222211111 1111 1 111111111100 0000000
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccC-HHHHHHHHH--ccCCHHHHHHHHHHHHHcCC
Q 003725 495 CLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN-YSAMVDGYC--EANHLEEAFQFFMTLSQRGF 571 (800)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~ 571 (800)
-+..-... ....-+.++..| .+..+.+.++.. .+....+.. +..++.... +...+.+|.+++...-+..+
T Consensus 300 ~Ls~~qk~----~i~~N~~lL~l~--tnk~~q~r~~~a-~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 300 KLSKKQKQ----AIYRNNALLALF--TNKMDQVRELSA-SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHH----HHHHHHHHHHHH--hhhHHHHHHHHH-hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 00000000 000011222222 233344444433 333222222 233332222 22245666666666655554
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC
Q 003725 572 LMRSESCCKLLTNLLIEGYNNKAFKLLD--------TMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRH--GL 641 (800)
Q Consensus 572 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 641 (800)
.-...+....+...+..|+++.|++++. .+.+.+..|. +...+...+.+.++-+.|..++...... .-
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ 450 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 4334455566667778888888888888 5555544444 4556777888888888888888877741 11
Q ss_pred CCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 003725 642 IPDLISYTML----IHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKI 693 (800)
Q Consensus 642 ~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 693 (800)
.+......++ ...-.+.|+-++|..+++++.+.. .+|..+..-++.+|+.+
T Consensus 451 ~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 451 QTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred cccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 2222333333 333457799999999999999853 67888899999999884
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-06 Score=87.35 Aligned_cols=465 Identities=15% Similarity=0.138 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHH
Q 003725 196 TCNFFMNQLLKCGEVDMVLVLYEEMKSV-GFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGL 274 (800)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 274 (800)
.|-.-+..+.++|++-.-...|+..... .+......|...++..-..+-.+.+..+|+..++. ++..-...|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4444555556666666666666655432 12222335555555555556666666666665542 222345555555
Q ss_pred HhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 003725 275 CENGRLDVGYDLLLKWSENG------IPLNAFAYTAVIREFCQNSRLV---EAESVLLRMKQLRVTPDK--YVYSALISG 343 (800)
Q Consensus 275 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~--~~~~~li~~ 343 (800)
+..+++++|.+.+..+.... .+.+-..|.-+.+...+..+.- ....+++.+... -+|. ..|.+|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 66666666666655554321 1333444555544444433322 122333333321 2332 345666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC--
Q 003725 344 YCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG----------------------KTSEAIKKFKEFKSMGI-- 399 (800)
Q Consensus 344 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~a~~~~~~~~~~~~-- 399 (800)
|.+.|.+++|.++|++....-... .-|..+..+|.+-. +++-.+.-|+.+.....
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tv-rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTV-RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheeh-hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 666666666666666655432111 11222222222111 11112222222222210
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 400 ---------FLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP------DVANYTTVIDGYILRGKLVDAIGLFKKM 464 (800)
Q Consensus 400 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 464 (800)
+-++..|..-+. +..|+..+-...+.+.... +.| -...|..+.+.|-..|+.+.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 011222221111 1233444444444444432 111 1233444555555555555555555555
Q ss_pred HHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCcc
Q 003725 465 REMGHKPD---IKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLE 541 (800)
Q Consensus 465 ~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 541 (800)
.+-..+-- ..+|..-...-.+..+++.|+.+++..... |.... ..+...+...++. ++ +++.
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~r-lh------rSlk 478 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQAR-LH------RSLK 478 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHHH-HH------HhHH
Confidence 44322110 122333333333444555555544444322 11100 0111111111100 00 0111
Q ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 003725 542 NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKT-TYDKVIGAL 620 (800)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~ 620 (800)
.|...++.--..|-++....+|+++.+..+. ++.........+-.+..++++.+++++-+..-..|+.. .|+..+.-+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 2555555555666777777777777766554 44444455555556666777777777665554344433 344444433
Q ss_pred Hh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 003725 621 CL---AGKIKWAHQVFDFLTRHGLIPDLISYTMLIH--GFCKLNCLREACNIFKDMKLRGIKPDV--VLYTILCD 688 (800)
Q Consensus 621 ~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~ll~ 688 (800)
.+ ...++.|+.+|+++++ |..|...-+-.|+. .--+.|....|++++++.... +++.. ..|++.|.
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 32 2356777777777777 33343222222221 112456677777777776543 34332 24555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-07 Score=98.95 Aligned_cols=297 Identities=14% Similarity=0.077 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHH
Q 003725 196 TCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLC 275 (800)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 275 (800)
..-....++...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++ .|..-|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHh
Confidence 3344456778999999999999886553 333455666788889999999999999999999872 34555555555553
Q ss_pred hc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 276 EN-----GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRL-VEAESVLLRMKQLRVTPDKYVYSALISGYCKCGN 349 (800)
Q Consensus 276 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 349 (800)
.. .+.+...++++++.+.- |...+...+.-.+.....+ ..+..++..+...|+++ +++.|-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 22 25667788888887752 3322222222122221122 34556777777888653 45555566665555
Q ss_pred HHHHHHHHHHHHHCC-------------CC-ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003725 350 IIKALSLHGEMTSIG-------------IK-TN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDA 412 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~-------------~~-~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 412 (800)
.+-..+++......- .. |. .++..+...|-..|++++|++.+++..+..+. .+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 555555555554321 11 22 34466677777888999999998888887644 36677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H----HH--HHHHHHHH
Q 003725 413 LCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI--K----AY--NVLARGLA 484 (800)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~----~~--~~l~~~~~ 484 (800)
+-+.|++++|.+.++.....+.. |...-+..+..+.++|++++|.+++....+.+..|-. . .| .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 88889999999988888877655 6777777788888889999998888888766543321 1 12 33456777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003725 485 QYGSVRDALDCLKYMKK 501 (800)
Q Consensus 485 ~~g~~~~a~~~~~~~~~ 501 (800)
+.|++..|++.|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888777766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9e-07 Score=94.62 Aligned_cols=159 Identities=11% Similarity=-0.027 Sum_probs=78.2
Q ss_pred HHHHHhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCC
Q 003725 77 VNKLDSFRKDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSN 156 (800)
Q Consensus 77 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (800)
++.+++-..+...|.+.|+.+....-. +...+..+...++....++.|..+....-+..+. .
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a-----------------~ 559 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-----------------F 559 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-----------------H
Confidence 333444333555666666666532111 5566667777777777777777664333222110 0
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HhHHHH
Q 003725 157 VFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQ-FTYDIV 235 (800)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~l 235 (800)
.-...|....-.|...++...|+..|+...+.+ +.|...|..++.+|.++|++..|.++|....... |+. ..---.
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~ 636 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKE 636 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHH
Confidence 011112223334455555666666666655554 3355556666666666666666666665554421 221 111111
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 003725 236 IKALCKLARFEEAFDVLNEMN 256 (800)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~ 256 (800)
....|..|.+.+|+..++...
T Consensus 637 A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 222344556666655555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-07 Score=92.30 Aligned_cols=547 Identities=17% Similarity=0.134 Sum_probs=288.1
Q ss_pred hCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHH
Q 003725 118 YCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTC 197 (800)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (800)
..+.|++|..+++.+..+. ..+.-|..+...|...|+++.|.++|-+.- .+
T Consensus 744 ~akew~kai~ildniqdqk--------------------~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~ 794 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--------------------TASGYYGEIADHYANKGDFEIAEELFTEAD---------LF 794 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--------------------cccccchHHHHHhccchhHHHHHHHHHhcc---------hh
Confidence 4566677776666654441 122346678888999999999999986543 34
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc
Q 003725 198 NFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 198 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (800)
+-.+.+|.+.|+|+.|.++-++... .+.....|..-..-+-+.|++.+|.++|-.+. .|+ ..|..|-+.
T Consensus 795 ~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~ 863 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKH 863 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhh
Confidence 5568889999999999998877643 34556677777777788899999998886543 243 346778888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 278 GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLH 357 (800)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 357 (800)
|..+..+++.++--..- -..|...+..-+-..|++..|+.-|-+.. -|.+-+++|-..+.|++|.++-
T Consensus 864 ~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 864 GLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred CcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 88888887776543221 23455666777778888888887775543 2455667777777777776664
Q ss_pred HHHHHC--------------CCCch-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 358 GEMTSI--------------GIKTN-------YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKL 416 (800)
Q Consensus 358 ~~~~~~--------------~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 416 (800)
+.--.. |-... ..+...+...+..+.++-|.++-+-..+... +. ....+...+-..
T Consensus 932 ktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~-~~--vhlk~a~~lede 1008 (1636)
T KOG3616|consen 932 KTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKM-GE--VHLKLAMFLEDE 1008 (1636)
T ss_pred hccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccC-cc--chhHHhhhhhhc
Confidence 321111 11000 0111122233344444444444433333221 11 112233445567
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcC-CHHHHHHHHHHH---------HHcCCCCCH--HHHHHH
Q 003725 417 GEVEEAVKLFNEMEGRQIVPDVANYTTVI-----DGYILRG-KLVDAIGLFKKM---------REMGHKPDI--KAYNVL 479 (800)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g-~~~~A~~~~~~~---------~~~~~~p~~--~~~~~l 479 (800)
|++++|-+.+-+..+.+. -..||...+ .-+.+.| ++++|..+|-.= -+. .-|+. ..|..-
T Consensus 1009 gk~edaskhyveaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~-h~~~~l~dv~tgq 1085 (1636)
T KOG3616|consen 1009 GKFEDASKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA-HCEDLLADVLTGQ 1085 (1636)
T ss_pred cchhhhhHhhHHHhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh-hChhhhHHHHhhh
Confidence 788888777777665421 111221110 1122333 344444433210 000 01111 123333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------c--cCcc
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLK----------------E--KCLE 541 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~--~~~~ 541 (800)
.+.....|++..|..++-+.. +|+. .+..|...+-+..|.++.+.-+. . ..+.
T Consensus 1086 ar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd 1156 (1636)
T KOG3616|consen 1086 ARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVD 1156 (1636)
T ss_pred hhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccH
Confidence 333444566666655443322 3442 23445555666666555442111 1 1233
Q ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 003725 542 NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPS--KTTYDKVIGA 619 (800)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 619 (800)
.+-.-..-.-+.|++.+|...+-++.+.... -..++..| .++|-++.-+. +.|+ .......+.+
T Consensus 1157 ~fvaqak~weq~gd~rkav~~~lkinrdst~-----nd~l~e~~-----~~kaadl~ikf----l~~d~nme~i~aa~~a 1222 (1636)
T KOG3616|consen 1157 GFVAQAKEWEQAGDWRKAVDALLKINRDSTD-----NDALAEHC-----TEKAADLSIKF----LMGDENMEVIGAAGGA 1222 (1636)
T ss_pred HHHHHHHHHHhcccHHHHHHHHhhhccCCCC-----cHHHHHHH-----HHHHHhhhhhh----cCCccchhhHHhcchh
Confidence 3445555566667777776666554322111 11111111 11121211111 1232 2444555556
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCC
Q 003725 620 LCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSS 699 (800)
Q Consensus 620 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~ 699 (800)
+...|..+.|.+++-..- .-...|+++|+...+.+|.++-+++. |...
T Consensus 1223 l~~~~~~e~aael~l~f~---------~~keaida~~~~eewakakqvake~~-----p~~~------------------ 1270 (1636)
T KOG3616|consen 1223 LDEAGCHEAAAELLLLFD---------LSKEAIDAFCEAEEWAKAKQVAKELD-----PEME------------------ 1270 (1636)
T ss_pred hhcccccHHHHHHHHHhh---------hHHHHHHHHHhHHHHHHHHHHHHHhC-----chhh------------------
Confidence 666777776666553221 12234677788888888887777652 3321
Q ss_pred CCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 700 SSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYK 779 (800)
Q Consensus 700 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 779 (800)
++..+.+++.....-+.|.+. + +-.-+-++.+...+.|++|++.-++ ..++|=-.-|.
T Consensus 1271 ------------~~idk~yke~lknegkl~eli------~-vdviaaidl~ien~qwdk~idtak~---qnykpil~kyv 1328 (1636)
T KOG3616|consen 1271 ------------DEIDKHYKEFLKNEGKLDELI------D-VDVIAAIDLMIENDQWDKAIDTAKK---QNYKPILDKYV 1328 (1636)
T ss_pred ------------HHHHHHHHHHHhccCcccccc------c-hhHHHHHHHHHhcccHHHHHHHHHh---cccHHHHHHHH
Confidence 123334444443222221110 1 1122456677777888877765433 35666655555
Q ss_pred HHHc-cccCCCCHHHHHhhhc
Q 003725 780 ALLC-GCPTKKDVDKYLSLFA 799 (800)
Q Consensus 780 ~l~~-~~~~~g~~~~A~~~~~ 799 (800)
++.. .+.+.|+..+|+.+++
T Consensus 1329 a~yaa~li~~~d~aq~lal~~ 1349 (1636)
T KOG3616|consen 1329 ALYAAHLIHEGDLAQALALLE 1349 (1636)
T ss_pred HHHHHHHHhcCcHHHHHHHHH
Confidence 5443 3467777777777664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-07 Score=86.44 Aligned_cols=399 Identities=15% Similarity=0.064 Sum_probs=240.8
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcC-Ch-hHHHHHHHHHHhCCCCCCHHhHHHH
Q 003725 158 FYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCG-EV-DMVLVLYEEMKSVGFSLNQFTYDIV 235 (800)
Q Consensus 158 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~-~~a~~~~~~m~~~~~~~~~~~~~~l 235 (800)
+.......+.+|-..++-+.|...+.+.....-. .--|.++.-+-+.| +. +.+...-+-+.+. | .... .
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~---p~inlMla~l~~~g~r~~~~vl~ykevvrec---p--~aL~-~ 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRS---PRINLMLARLQHHGSRHKEAVLAYKEVIREC---P--MALQ-V 166 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccc---hhHHHHHHHHHhccccccHHHHhhhHHHHhc---c--hHHH-H
Confidence 4556677888888889999999988777654322 23344444443333 22 2222222222221 1 1111 1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHH--hcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 003725 236 IKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLC--ENGRLDVGYDLLLKWSEN-GIPLNAFAYTAVIREFCQN 312 (800)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 312 (800)
|.+..+.+ +..+...=..|-...+.|+..+...-+.+++ -.++...|...+-.+... -++-|+.....+...+...
T Consensus 167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 11221111 1111111112222233444444444444443 345555555544444332 2566778888888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 313 SRLVEAESVLLRMKQLRVTPDKY-VYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKF 391 (800)
Q Consensus 313 g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 391 (800)
|+..+|+..|+..... .|+.. ......-.+...|+++....+...+....-.....|..-+.......+++.|+.+-
T Consensus 246 Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred cCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 9999999999888764 23322 22223334567788888877777776554333344555555566677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003725 392 KEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP 471 (800)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (800)
++....... +...|-.-...+...+++++|.-.|+......+ -+...|.-|+.+|...|++.+|.-+-+...+. +..
T Consensus 324 eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 324 EKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 877766443 344454445567778888888888888776532 26788888999999888888888776665443 223
Q ss_pred CHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CccCHHHHHH
Q 003725 472 DIKAYNVLA-RGLA-QYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEK-CLENYSAMVD 548 (800)
Q Consensus 472 ~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~l~~ 548 (800)
+..+.+.+. ..|. ...--++|.++++...+.. |.-......+.+.+...|..++++.++++.+... +....+.|.+
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGD 479 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHH
Confidence 555555542 2222 2333467888888777653 2234556677777888888888888888766644 4444778888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC
Q 003725 549 GYCEANHLEEAFQFFMTLSQRGFL 572 (800)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~~~~~ 572 (800)
.+...+.+++|++.|...+..++.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcc
Confidence 888888888888888887776654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-09 Score=114.37 Aligned_cols=150 Identities=13% Similarity=0.049 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 315 LVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEF 394 (800)
Q Consensus 315 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 394 (800)
+++|...+++..+.. +.+...+..+...+...|++++|...+++..+.++....++..+..++...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555555555442 1234444444455555555555555555555544443344445555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 395 KSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
.+..+.. ...+..++..+...|++++|...++++.....+-+...+..+...+...|++++|...+.++..
T Consensus 399 l~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 399 LKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 5544331 1122222333444555555555555554432111333344455555555555555555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-09 Score=117.22 Aligned_cols=266 Identities=14% Similarity=0.048 Sum_probs=178.4
Q ss_pred cCHHHHHHHHHHHH-----HcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---------cCChhHHHHHHHHHHh
Q 003725 192 WSKFTCNFFMNQLL-----KCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK---------LARFEEAFDVLNEMNK 257 (800)
Q Consensus 192 ~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~ 257 (800)
.+..+|...+.+.. ..+.+++|...|++..+.. +.+...|..+..++.. .+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555432 1245788888888888753 2234455555554432 2447889999988888
Q ss_pred CCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 003725 258 AGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVY 337 (800)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 337 (800)
.+ +.+...+..+...+...|++++|...++++.+.+ |.+...+..+...+...|++++|...+++..+.... +...+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 65 2366778888888888899999999999988875 556778888888888999999999999998886432 22233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 338 SALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKL 416 (800)
Q Consensus 338 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 416 (800)
..++..+...|++++|...++++.....+.. ..+..+..++...|+.++|...+.++...... +....+.+...|+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhcc
Confidence 3344456668889999999888876643222 56677788888899999999998887655332 344556666677777
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 417 GEVEEAVKLFNEMEGR-QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 417 g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
| +.|...++.+.+. ...+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 7 4777777776543 111222222 33445556676666655 777665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-09 Score=103.56 Aligned_cols=199 Identities=11% Similarity=0.054 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 003725 159 YRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKA 238 (800)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 238 (800)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4556666677777777777777777666543 2345566666667777777777777777666543 2344555566666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003725 239 LCKLARFEEAFDVLNEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVE 317 (800)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 317 (800)
+...|++++|.+.++........ .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66677777777777666653211 123344555555666666666666666665542 3344455556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 318 AESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMT 361 (800)
Q Consensus 318 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 361 (800)
|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666665554 22344444455555555566666655555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-11 Score=84.07 Aligned_cols=50 Identities=48% Similarity=0.895 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 643 PDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 643 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-09 Score=102.36 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHH
Q 003725 194 KFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQG 273 (800)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 273 (800)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444555555555555555555555554432 2233444445555555555555555555554432 1123334444444
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 003725 274 LCENGRLDVGYDLLLKWSE 292 (800)
Q Consensus 274 ~~~~g~~~~a~~~~~~~~~ 292 (800)
+...|++++|.+.+++..+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 4444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-09 Score=108.41 Aligned_cols=243 Identities=16% Similarity=0.141 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C
Q 003725 405 CYNVIMDALCKLGEVEEAVKLFNEMEGR-----Q-IVPDVA-NYTTVIDGYILRGKLVDAIGLFKKMREM-----GHK-P 471 (800)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-p 471 (800)
+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++.+|..+|+++... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344555666666666666666655432 1 011221 2223445566666666666666665431 111 1
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCH
Q 003725 472 D-IKAYNVLARGLAQYGSVRDALDCLKYMKKQ-----GV-KPN-VITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENY 543 (800)
Q Consensus 472 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 543 (800)
. ..+++.|..+|.+.|++++|..+++...+. |. .|. ...++.+...++..+++++|..++.+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a--------- 351 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA--------- 351 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH---------
Confidence 1 234555555566666666655555544321 10 111 112333444455555555555555521
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHH
Q 003725 544 SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKL-----D--AKPSKTTYDKV 616 (800)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l 616 (800)
++++..........-..++..+...|...|++++|.+++++++.. + ..-....++.+
T Consensus 352 ----------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 352 ----------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ----------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 222221111111112345666777777777777777777776543 1 12224467788
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 617 IGALCLAGKIKWAHQVFDFLTR----HGLI-P-DLISYTMLIHGFCKLNCLREACNIFKDMK 672 (800)
Q Consensus 617 ~~~~~~~g~~~~A~~~~~~~~~----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 672 (800)
...|.+.+.+.+|.++|.+... .|+. | ...+|..|+..|.+.|++++|.++.+...
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8889999999999988887653 2322 1 35678899999999999999999988776
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-11 Score=83.59 Aligned_cols=50 Identities=36% Similarity=0.680 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHccccC
Q 003725 738 PDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPT 787 (800)
Q Consensus 738 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 787 (800)
||..+||+++++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 59999999999999999999999999999999999999999999999875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-08 Score=105.04 Aligned_cols=241 Identities=18% Similarity=0.193 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--
Q 003725 369 YVVSVILKCLCQMGKTSEAIKKFKEFKSM-----GI-FLDQV-CYNVIMDALCKLGEVEEAVKLFNEMEGR-----QI-- 434 (800)
Q Consensus 369 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-- 434 (800)
.+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++..- |.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444555555555555555555444322 11 11222 2334666777888888888888887542 21
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 003725 435 VPDVANYTTVIDGYILRGKLVDAIGLFKKMREM-----GHK-PDIK-AYNVLARGLAQYGSVRDALDCLKYMKKQ---GV 504 (800)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~ 504 (800)
+.-..+++.|...|.+.|++++|..+++...+. |.. |.+. .++.+...++..+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112356677777888899988888887776431 222 2222 3566777788889999999888876542 11
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----C------ccCHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003725 505 KP----NVITHNMIIEGLCTSGRVKEARAFFDDDLKEK----C------LENYSAMVDGYCEANHLEEAFQFFMTLSQRG 570 (800)
Q Consensus 505 ~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (800)
.+ -..+++.+...|.+.|++++|.+++++.+... . -..++.|...|.+.+++.+|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~--- 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK--- 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH---
Confidence 12 24567788888888888888888888544321 0 0114555555555555555555554422
Q ss_pred CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003725 571 FLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR 638 (800)
Q Consensus 571 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 638 (800)
.+. .....+.+....+|..|...|...|+++.|.++.+.+..
T Consensus 437 -------------------------~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 437 -------------------------DIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -------------------------HHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 112222234456799999999999999999999988773
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-06 Score=90.89 Aligned_cols=256 Identities=15% Similarity=0.144 Sum_probs=152.8
Q ss_pred HHHHHHH--HHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CC--------CCCH
Q 003725 161 VSDAMVK--AYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSV-GF--------SLNQ 229 (800)
Q Consensus 161 ~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~--------~~~~ 229 (800)
+...++. .|...|+.+.|++-.+.+.. ...|..+...+.+..+.|-|.-.+..|... |. .|+
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 3344443 36677999999888766543 458889999999999998888877777532 11 121
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003725 230 FTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREF 309 (800)
Q Consensus 230 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 309 (800)
.+-..+...-...|.+++|+.+|.+-.+ |..|=..|-..|.+++|+++-+.=-.-. -..||.....-+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYL 868 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHH
Confidence 2222223333467888888888887654 3344455667888888888765432221 124566666666
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIK 389 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 389 (800)
-..++.+.|++.|++... |--..+..|. .++.....+.+.+.+ ...|......+-..|+.+.|+.
T Consensus 869 ear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~~d-----~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRKRD-----ESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred HhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhccc-----hHHHHHHHHHHhcccchHHHHH
Confidence 777888888888876432 1111111111 112222222222221 1455556666666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 390 KFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465 (800)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (800)
+|...+. |-++++..|-.|+.++|-++-++-. |....-.+...|-..|++.+|...|.+..
T Consensus 934 ~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 934 FYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7765543 4455666666777777776655522 44555566677777777777777776553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-06 Score=83.39 Aligned_cols=292 Identities=14% Similarity=0.062 Sum_probs=149.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTN--YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVK 424 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (800)
.++...|...+-.+.....-++ .....+.+++...|+.++|+..|++....++. +........-.+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 3444444444443333332222 45555556666666666666666555543221 11111222223345566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 425 LFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGV 504 (800)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 504 (800)
+...+.... .-....|-.-.......++++.|+.+-.+.++.+.. +...|-.-...+...|+.++|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 665554431 012233333334444556677777777666654322 34444444556666777777777777666552
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 003725 505 KPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTN 584 (800)
Q Consensus 505 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (800)
|-+...|..|+.+|...|++.+|.-.-+..+..- +.-.+++.++-. ..
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~---------------~~sA~~LtL~g~-----------------~V 412 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF---------------QNSARSLTLFGT-----------------LV 412 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh---------------hcchhhhhhhcc-----------------ee
Confidence 4456677777777777777777765555322211 111111111100 01
Q ss_pred HH-hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 585 LL-IEGYNNKAFKLLDTMLKLDAKPSK-TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLR 662 (800)
Q Consensus 585 ~~-~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 662 (800)
+. ...--++|.++++..++.. |+. ...+.+...+...|..+.+..+++.... ..||....+.|.+.+...+.++
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHH
Confidence 11 1112355666666655442 332 2344555566666777777776666554 2356666677777777777777
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 003725 663 EACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 663 ~A~~~~~~m~~~g~~pd~ 680 (800)
+|++.|...+. +.|+.
T Consensus 489 ~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 489 KAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHh--cCccc
Confidence 77777766665 34543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-08 Score=90.83 Aligned_cols=430 Identities=11% Similarity=0.069 Sum_probs=232.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhc
Q 003725 302 YTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQM 381 (800)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (800)
+++++..+.+..++++|++++..-.+.. +.+....+.|..+|....++..|-..++++....+....--..-...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 5555666666667777777766665542 125556666667777777777777777777665444433333445566667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 382 GKTSEAIKKFKEFKSMGIFLDQVCYNVIMD--ALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIG 459 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (800)
+.+.+|+.+...+... ++...-..-+. .....+++..+..+.+.....| +..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7777777777666543 11111111111 1234567777777777765432 44555555556667888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 003725 460 LFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHN----MIIEGLCTSGRVKEARAFFDDDL 535 (800)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~ 535 (800)
-|+...+-+--.....|+.-+. ..+.|+.+.|+++..+++++|++..+..-. ..+++- ..|+. ..+.
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh---- 236 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLH---- 236 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHH----
Confidence 8888876544435666776554 446788888888888888887654332110 000000 00100 0000
Q ss_pred hccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003725 536 KEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRG-FLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYD 614 (800)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 614 (800)
.+.-...++.-...+.+.|+++.|.+.+.+|..+. ...|+.++..+.-.- ..+++-+..+-+.-++..+ +-...||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHH
Confidence 01111224444555677888888888888886543 345666766554322 2244455555555555554 34567888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 615 KVIGALCLAGKIKWAHQVFDFLTRHGLI-PDLISYTMLIHGFC-KLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 615 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
.++-.||+..-++.|-+++.+-...... .+...|+ |++++. -.-..++|.+-++.+...- .+...-.++--.-.+
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l--~~kLRklAi~vQe~r 391 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML--TEKLRKLAIQVQEAR 391 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 8888999998888888877643321111 1233333 333333 3345666665544443210 000000000000000
Q ss_pred cCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 693 INKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLE 772 (800)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 772 (800)
.. ..+..+..|.+-+++..+. -..+..+-.+.|++..++..+.+.|..-.+ +-
T Consensus 392 ~~-----------~dd~a~R~ai~~Yd~~LE~--------------YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve--fC 444 (459)
T KOG4340|consen 392 HN-----------RDDEAIRKAVNEYDETLEK--------------YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE--FC 444 (459)
T ss_pred hc-----------ccHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhccccccHHHHHHHHHHHh--hh
Confidence 00 0122333344444433332 112344567788899999999999998874 44
Q ss_pred CCHHHHH
Q 003725 773 PNIVIYK 779 (800)
Q Consensus 773 p~~~~~~ 779 (800)
.+..+|.
T Consensus 445 ~ehd~Wk 451 (459)
T KOG4340|consen 445 NDHDVWK 451 (459)
T ss_pred cccceee
Confidence 4555553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-06 Score=86.18 Aligned_cols=336 Identities=14% Similarity=0.111 Sum_probs=169.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 376 KCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLV 455 (800)
Q Consensus 376 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 455 (800)
..+...|+++.|+..|-+.. ..-..+.+.....+|.+|+.+++.+..... -..-|..+.+.|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 34445555665555543221 112234455566677777777777665532 2334566667777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 456 DAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDL 535 (800)
Q Consensus 456 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 535 (800)
.|.++|.+.- .++-.|..|.+.|+++.|.++-.+.. |.......|..-..-+-+.|++.+|++++- .+
T Consensus 783 ~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi-ti 850 (1636)
T KOG3616|consen 783 IAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI-TI 850 (1636)
T ss_pred HHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE-Ec
Confidence 7777775432 13445666777777777776655443 223334444444445566677777766654 22
Q ss_pred hccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003725 536 KEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDK 615 (800)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 615 (800)
..+ ..-|.+|-+.|..++.+++..+-... .-..+...+..-+-..|+...|...|-+.. -|.+
T Consensus 851 ~~p-----~~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~ka 913 (1636)
T KOG3616|consen 851 GEP-----DKAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKA 913 (1636)
T ss_pred cCc-----hHHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHH
Confidence 221 23455666666666666655443211 122344455555666666666665554432 1344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHhcc
Q 003725 616 VIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDM--KLRGIKPDVVLYTILCDAYSKI 693 (800)
Q Consensus 616 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~g~~pd~~~~~~ll~~~~~~ 693 (800)
.+++|-.++.+++|.++-+. .|-. |..-. ++..+++.=--+.|.+++++. ++.+ ++--+
T Consensus 914 avnmyk~s~lw~dayriakt---egg~-n~~k~--v~flwaksiggdaavkllnk~gll~~~-----------id~a~-- 974 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRIAKT---EGGA-NAEKH--VAFLWAKSIGGDAAVKLLNKHGLLEAA-----------IDFAA-- 974 (1636)
T ss_pred HHHHhhhhhhHHHHHHHHhc---cccc-cHHHH--HHHHHHHhhCcHHHHHHHHhhhhHHHH-----------hhhhh--
Confidence 45556556666555444321 1111 22211 112223332334455555442 1111 11111
Q ss_pred CCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 694 NKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEP 773 (800)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 773 (800)
.++.++-|..+-+-... .- ...+.--+.--+-..|++++|.+.+-+.++. ..
T Consensus 975 -------------d~~afd~afdlari~~k-~k------------~~~vhlk~a~~ledegk~edaskhyveaikl--nt 1026 (1636)
T KOG3616|consen 975 -------------DNCAFDFAFDLARIAAK-DK------------MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL--NT 1026 (1636)
T ss_pred -------------cccchhhHHHHHHHhhh-cc------------CccchhHHhhhhhhccchhhhhHhhHHHhhc--cc
Confidence 13344555554332221 11 2223334555677889999999998888743 33
Q ss_pred CHHHHHHHH-c----cccCCC-CHHHHHhhh
Q 003725 774 NIVIYKALL-C----GCPTKK-DVDKYLSLF 798 (800)
Q Consensus 774 ~~~~~~~l~-~----~~~~~g-~~~~A~~~~ 798 (800)
-..||-.-+ + -..+.| +.++|++.|
T Consensus 1027 ynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1027 YNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred ccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 344443222 1 123444 778888776
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-07 Score=90.78 Aligned_cols=405 Identities=12% Similarity=0.052 Sum_probs=255.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD-KYVYSALISGYCKCGN 349 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 349 (800)
..+.+..|+++.|..+|-+.+... ++|.+.|..-..+|.+.|++++|.+=-.+-.+. .|+ ...|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 356778999999999999999986 668999999999999999999998776666664 455 4678889999999999
Q ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHH---HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhc-------
Q 003725 350 IIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSE---AIKKFKEFKSM---GIFLDQVCYNVIMDALCKL------- 416 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~------- 416 (800)
+++|+.-|.+-++..+........+..++.......+ --.++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999999999988876666777777776621111000 00111111110 0001111233333222110
Q ss_pred ---CCHHHHHHHHHHHH-----hC-------CCCC----------------------CHHHHHHHHHHHHhcCCHHHHHH
Q 003725 417 ---GEVEEAVKLFNEME-----GR-------QIVP----------------------DVANYTTVIDGYILRGKLVDAIG 459 (800)
Q Consensus 417 ---g~~~~A~~~~~~~~-----~~-------~~~~----------------------~~~~~~~li~~~~~~g~~~~A~~ 459 (800)
.++..|...+.... .. +..| -..-...+.+...+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 01111111111100 00 0011 01123445566666677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCCHHHHHHHHH
Q 003725 460 LFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITH-------NMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.+....+.. -+..-++....++...|.+.++........+.|.. ...-+ ..+..+|.+.++++.++.+|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777777654 24445566666777777777777666666655522 11112 223335566677777777777
Q ss_pred HHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003725 533 DDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTT 612 (800)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 612 (800)
+.+.....+ +...+....++++.......-.++.. ..-...-...+.+.|++..|+..|.++++.. +.|...
T Consensus 323 kaLte~Rt~------~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~l 394 (539)
T KOG0548|consen 323 KALTEHRTP------DLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARL 394 (539)
T ss_pred HHhhhhcCH------HHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHH
Confidence 655443221 12223334455555444444333322 1222233567888999999999999999987 678889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 613 YDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 613 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
|....-+|.+.|.+..|+.-.+...+.++. ....|.-=..++.-..++++|++.|++.++. .|+..-+..-+.-|..
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 999999999999999999988888886444 4556666666777788999999999999874 6777766666666655
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-07 Score=93.27 Aligned_cols=95 Identities=17% Similarity=-0.049 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003725 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ 485 (800)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 485 (800)
|..+...|...|+.++|...|++..+.++. +...|+.+...+...|++++|...|++..+.... +..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 444444555555555555555555554332 4455555555555555555555555555544221 34445555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 003725 486 YGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 486 ~g~~~~a~~~~~~~~~~ 502 (800)
.|++++|.+.++...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-07 Score=82.30 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=8.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003725 445 IDGYILRGKLVDAIGLFKKMR 465 (800)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~~~ 465 (800)
.....+.|++..|...++...
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHhcccchHHHHHHHHHH
Confidence 333333344444443333333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-07 Score=81.29 Aligned_cols=194 Identities=12% Similarity=0.007 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 267 YSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCK 346 (800)
Q Consensus 267 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 346 (800)
...|.-+|...|++..|..-+++.++.+ |.+..+|..+...|.+.|+.+.|.+.|++..+.. +.+....|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3444455555555555555555555543 3344455555555555555555555555555432 1233444444445555
Q ss_pred cCCHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 347 CGNIIKALSLHGEMTSIGIKTN--YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVK 424 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (800)
.|.+++|...|++....-.-+. .++..+.-+..+.|+.+.|.+.|++..+.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 5555555555555544322221 45555555555555555555555555544433 22233444444555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 425 LFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKM 464 (800)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 464 (800)
.++.....+. ++..+.-..|..-...|+.+.+.+.=..+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555544433 34444444444444455544444443333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-05 Score=74.85 Aligned_cols=317 Identities=10% Similarity=0.049 Sum_probs=170.3
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHH-HH
Q 003725 157 VFYRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYD-IV 235 (800)
Q Consensus 157 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l 235 (800)
.++.-...+.+.+..+|++.+|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+....+. +||-..-. --
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344455678888889999999999999988764 234445555567889999999999999998874 57754322 23
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003725 236 IKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRL 315 (800)
Q Consensus 236 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 315 (800)
...+.++|.+++|..-|+.+++... +..+- ..+..+.--.++- ......+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~--s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEP--SNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCC--Ccchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCch
Confidence 4567789999999999999988653 21110 0011100000000 1111223333445555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 316 VEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFK 395 (800)
Q Consensus 316 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 395 (800)
..|+.....+.+.. +-|...|..-..+|...|++.+|+.-++...+........+..+...+...|+.+.++...++..
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55555555555532 23555555555566666666666655555555444444555555555556666666655555555
Q ss_pred HCCCCCCHHH-HH---HH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 003725 396 SMGIFLDQVC-YN---VI---------MDALCKLGEVEEAVKLFNEMEGRQIVPDVA---NYTTVIDGYILRGKLVDAIG 459 (800)
Q Consensus 396 ~~~~~~~~~~-~~---~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~ 459 (800)
+.+ ||... |. .| +......++|.++.+-.+...+..+.-... .+..+-.++...|++.+|+.
T Consensus 251 Kld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred ccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 443 22211 10 00 111223344444444444444432221111 12223334444555555555
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 460 LFKKMREMGHKP-DIKAYNVLARGLAQYGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 460 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (800)
.-.+.++. .| |..++.--..+|.-...++.|+.-|+...+.
T Consensus 329 qC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 329 QCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55555543 22 2444444455555555555555555555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-07 Score=91.24 Aligned_cols=150 Identities=13% Similarity=-0.020 Sum_probs=81.4
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHH
Q 003725 208 GEVDMVLVLYEEMKSVG-FSLN--QFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGY 284 (800)
Q Consensus 208 g~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 284 (800)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555321 1111 2345555556666666666666666666654 224556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 285 DLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMT 361 (800)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 361 (800)
+.|++..+.. +.+..+|..+...+...|++++|.+.|+...+.. |+..........+...+++++|...+++..
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666666543 3345556666666666666666666666666542 322211111122233455666666665433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-06 Score=86.26 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--HHHHHHHHHHHHhcCC
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIF-LD--QVCYNVIMDALCKLGE 418 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~ 418 (800)
..+...|++++|...+++..+..+.....+..+..++...|++++|...+++....... ++ ...|..+...+...|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 33444444444444444444433332233344444444444444444444444332211 11 1223344555555566
Q ss_pred HHHHHHHHHHHH
Q 003725 419 VEEAVKLFNEME 430 (800)
Q Consensus 419 ~~~A~~~~~~~~ 430 (800)
+++|..++++..
T Consensus 202 ~~~A~~~~~~~~ 213 (355)
T cd05804 202 YEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHh
Confidence 666666665553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=5e-06 Score=86.50 Aligned_cols=196 Identities=16% Similarity=0.035 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--cc----CHHHHHHHHH
Q 003725 478 VLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--LE----NYSAMVDGYC 551 (800)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~l~~~~~ 551 (800)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..++++.+.... +. .|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33344445555555555555555443 33344444445555555555555555554333211 11 1334455555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChh-cH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 003725 552 EANHLEEAFQFFMTLSQRGFLMRSE-SC-C--KLLTNLLIEGYNNKAFKL--LDTMLKLDA--KPSKTTYDKVIGALCLA 623 (800)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~-~--~l~~~~~~~g~~~~A~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~ 623 (800)
..|++++|..++++.......+... .. . .++.-+...|..+.+..+ +........ ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 5566666666665554322211111 00 0 122222333332222222 111111110 11112223456677889
Q ss_pred CChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 624 GKIKWAHQVFDFLTRHGLI--------PDLISYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 624 g~~~~A~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
|+.+.|...++.+...... ..+.......-++.+.|+.++|.+.+.+.+..
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999888752111 01222233334567899999999999998753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-05 Score=79.72 Aligned_cols=407 Identities=15% Similarity=0.120 Sum_probs=249.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-hhcHHHHHHHHHhcCC
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLH-GHNYSTIIQGLCENGR 279 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 279 (800)
.++.+..|+++.|...|-+.+... ++|-..|..-..+|+..|++++|++=-.+-++. .|+ ..-|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456678899999999999988765 457778888899999999999988877666664 354 3578888888888999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHH
Q 003725 280 LDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALI-----SGYCKCGNIIKAL 354 (800)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~ 354 (800)
+++|+..|.+-++.. +.|...++.+.+++... . .+.+.| .++..|..+. +.+...-.+..-+
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 999999999888874 66777888888877111 1 111111 1111111111 1111111111111
Q ss_pred HHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHH-HHHH------------HHHHHCCCCC-----------CHHHHH
Q 003725 355 SLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEA-IKKF------------KEFKSMGIFL-----------DQVCYN 407 (800)
Q Consensus 355 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a-~~~~------------~~~~~~~~~~-----------~~~~~~ 407 (800)
+.+ ..++..- .-...++.+.......+.- ...- .......... -..-..
T Consensus 153 ~~~----~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 153 EII----QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHh----hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 111 1110000 0001111111110000000 0000 0000000000 112245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HH
Q 003725 408 VIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNV-------LA 480 (800)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-------l~ 480 (800)
.+.++..+..+++.|.+.+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 56777778889999999999988765 36666777778899999988888777776665532 2223333 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccC---HHHHHHHHHccCCHH
Q 003725 481 RGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN---YSAMVDGYCEANHLE 557 (800)
Q Consensus 481 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 557 (800)
.++.+.++++.++..|.+.+..-..|+.. .+....+++.+..+. ....++.. ...-...+.+.|++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~-~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAER-KAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHHHHhccCHH
Confidence 35556778899999999877654443322 222333344333331 11111111 222366788899999
Q ss_pred HHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003725 558 EAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLT 637 (800)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 637 (800)
.|+..|.+++.+++. |...|.....+|.+.|.+..|++-.+..++.+ ++....|..=..++....++++|.+.|++.+
T Consensus 376 ~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999865 78899999999999999999999988888774 3344445555566667788999999999999
Q ss_pred HCCCC
Q 003725 638 RHGLI 642 (800)
Q Consensus 638 ~~~~~ 642 (800)
+.++.
T Consensus 454 e~dp~ 458 (539)
T KOG0548|consen 454 ELDPS 458 (539)
T ss_pred hcCch
Confidence 87533
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.3e-05 Score=72.15 Aligned_cols=332 Identities=14% Similarity=0.027 Sum_probs=197.8
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 003725 263 HGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVY-SALI 341 (800)
Q Consensus 263 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 341 (800)
++.-.-.+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+-..|+.=+..+.+. .||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34445566677777778888877777777653 223333334445667777777777777777764 4654322 2233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (800)
..+.+.|.++.|..-|+.++...+... ...++.+-+....+ .......+..+...|+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~--------------~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNG--------------LVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcc--------------hhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhh
Confidence 456777777777777777776654332 11111111110000 1112233445666788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKK 501 (800)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 501 (800)
|+.....+.+-.+- |+..|..-..+|...|++..|+.-++...+.... +..++.-+-..+...|+.+.++...++-++
T Consensus 174 ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 99999988876443 7888888888999999999998888877665433 566666677777888999888888888776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh---cH
Q 003725 502 QGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSE---SC 578 (800)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 578 (800)
. .||...... .|-+..++.+.++-.+ ...+.++|.++++..+...+..+..... .+
T Consensus 252 l--dpdHK~Cf~---~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 252 L--DPDHKLCFP---FYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred c--CcchhhHHH---HHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 5 566543321 2222222222211111 2233456666666666666655442222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003725 579 CKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGL 641 (800)
Q Consensus 579 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 641 (800)
..+-.++...|++.+|++...+.+... +.|..++.--..+|.-...++.|+.-|+.+.+.+.
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 334445555666777777777666543 23355565566666666677777777776666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-06 Score=76.63 Aligned_cols=314 Identities=12% Similarity=0.067 Sum_probs=185.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHH-HHHHHH
Q 003725 162 SDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDI-VIKALC 240 (800)
Q Consensus 162 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~ 240 (800)
+++.+..+.+..++.+|++++..-.+.+ +.+....+.|...|....++..|...++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666677789999999988777664 236777888888999999999999999998764 355544442 235566
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhc--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHN--YSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEA 318 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 318 (800)
+.+.+.+|+++...|... ++... ...-.....+.+|+..+..++++....| +..+.+...-...+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 788999999998887652 22222 2222223446788888888888877544 445555555666789999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHH-----HHHHHHHHhcCCHHHHHHHHHH
Q 003725 319 ESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVV-----SVILKCLCQMGKTSEAIKKFKE 393 (800)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~ 393 (800)
.+-|+...+.+--.....|+.-+ +..+.|+++.|+++..+++++|++...-+ ...+.+ ...|+. ..
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~---- 234 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LV---- 234 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HH----
Confidence 99999988775455566777554 44566899999999999988876532000 000000 000000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003725 394 FKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGR-QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPD 472 (800)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 472 (800)
|...+ -+..+|.-...+.+.|+++.|.+.+-.|..+ ....|+.|...+.-.- ..+++.+..+-+.-+++.++ -.
T Consensus 235 lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 235 LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 00000 1223444444455556666666665555432 1223444443332211 12334444444444444333 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 473 IKAYNVLARGLAQYGSVRDALDCLKY 498 (800)
Q Consensus 473 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 498 (800)
..||..++-.||++.-++.|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 44555555556666656555555544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.00019 Score=76.89 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=140.2
Q ss_pred ccCChHHHHHHHHHccCCCCccCHHHHHHHHH--HHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHH
Q 003725 171 SERMFDQALNVLFQTDRPGFVWSKFTCNFFMN--QLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEA 248 (800)
Q Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 248 (800)
..+++..|+....+..+.. |+... ...+. .+.+.|+.++|..+++.....+. .|..|...+-..|...|+.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 3467778888777766652 44322 22233 45788899999988888766543 3777888888888889999999
Q ss_pred HHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHH
Q 003725 249 FDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSR----------LVEA 318 (800)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A 318 (800)
..+|+..... .|+......+..+|.+.+++.+-.+.--++.+. .+-++..+=+++..+...-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999888775 467777777788888888777665555555443 34455555555555443211 2335
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 319 ESVLLRMKQLR-VTPDKYVYSALISGYCKCGNIIKALSLHGE-MTSIGIKTN-YVVSVILKCLCQMGKTSEAIKKFKEFK 395 (800)
Q Consensus 319 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 395 (800)
.+.++.+.+.+ ..-+..-...-...+-..|++++|.+++.. ..+.-...+ ...+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 56666666543 111222222223445567788888888743 333222222 444566677777788888887777777
Q ss_pred HCCCC
Q 003725 396 SMGIF 400 (800)
Q Consensus 396 ~~~~~ 400 (800)
..+..
T Consensus 254 ~k~~D 258 (932)
T KOG2053|consen 254 EKGND 258 (932)
T ss_pred HhCCc
Confidence 76643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-05 Score=90.72 Aligned_cols=332 Identities=12% Similarity=0.004 Sum_probs=178.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCC--C----CCC--HHHHHHHHHHHH
Q 003725 239 LCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG--I----PLN--AFAYTAVIREFC 310 (800)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~----~~~--~~~~~~li~~~~ 310 (800)
+...|+++.+..+++.+.......+..........+...|+++++..++....+.- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44456666666666554221111222233344444556677777777766654320 0 111 112222334445
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCch--HHHHHHHHHHHh
Q 003725 311 QNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALSLHGEMTSIG----IKTN--YVVSVILKCLCQ 380 (800)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~--~~~~~l~~~~~~ 380 (800)
..|++++|...+++....-...+. ...+.+...+...|++++|...+++..... .... .....+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677777777777776542111121 233455556667777777777777665321 1111 344455666777
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 003725 381 MGKTSEAIKKFKEFKSM----GIF--L-DQVCYNVIMDALCKLGEVEEAVKLFNEMEGR----QIVPDVANYTTVIDGYI 449 (800)
Q Consensus 381 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~ 449 (800)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 77777777777665432 211 1 1233444555666678888887777776432 11112334444556677
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHh
Q 003725 450 LRGKLVDAIGLFKKMREMG--HKPDIK--AY--NVLARGLAQYGSVRDALDCLKYMKKQGVKPNV---ITHNMIIEGLCT 520 (800)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 520 (800)
..|++++|...+.+..... ...... .. ...+..+...|+.+.|...+............ .....+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7788888877777764321 111110 11 11123344567777777777665432211111 113455666777
Q ss_pred cCCHHHHHHHHHHHHhcc---C-c----cCHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003725 521 SGRVKEARAFFDDDLKEK---C-L----ENYSAMVDGYCEANHLEEAFQFFMTLSQRG 570 (800)
Q Consensus 521 ~g~~~~a~~~~~~~~~~~---~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (800)
.|+.++|...+++.+... . . .....+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888888888887554421 1 1 124455667778888888888888887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-07 Score=89.19 Aligned_cols=252 Identities=17% Similarity=0.109 Sum_probs=127.2
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARF 245 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 245 (800)
++-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344566788888886665 333332334555666778888888876544 3443332 46665555554444333444
Q ss_pred hHHHHHHHHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003725 246 EEAFDVLNEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLR 324 (800)
Q Consensus 246 ~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (800)
+.++.-+++....... .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555544443333222 12222233334455567777777766532 2455566667777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 325 MKQLRVTPDKYVYSALISGYCK----CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIF 400 (800)
Q Consensus 325 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 400 (800)
|.+.+ .|. +...+..++.. .+.+.+|..+|+++.+. ..
T Consensus 157 ~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-----------------------------------~~ 198 (290)
T PF04733_consen 157 MQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-----------------------------------FG 198 (290)
T ss_dssp HHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-----------------------------------S-
T ss_pred HHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-----------------------------------cC
Confidence 76642 232 22233333221 22455555555555433 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 003725 401 LDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKL-VDAIGLFKKMREM 467 (800)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~ 467 (800)
+++.+.+.+..++...|++++|.+++.+....+.. +..+...++......|+. +.+.+++.++...
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 34455555555555556666666665555544332 444555555555555554 4444555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-06 Score=86.22 Aligned_cols=268 Identities=15% Similarity=0.074 Sum_probs=158.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 448 YILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEA 527 (800)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 527 (800)
+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 44566666666666666555332 55566666666666666666666666666653 44555666666666666666666
Q ss_pred HHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH-HhCCC
Q 003725 528 RAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM-LKLDA 606 (800)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 606 (800)
.+.+++.+..+....|..... ..++...- +-.++...+.. ..++|-++ ...+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~---~~~~~~~~----------~s~~~~~~l~~-------------i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAG---ENEDFENT----------KSFLDSSHLAH-------------IQELFLEAARQLPT 426 (579)
T ss_pred HHHHHHHHHhCccchhccccC---ccccccCC----------cCCCCHHHHHH-------------HHHHHHHHHHhCCC
Confidence 666665555432221111000 00000000 00112222221 12222222 23343
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHH
Q 003725 607 KPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVL-YTI 685 (800)
Q Consensus 607 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~ 685 (800)
.+|+.+...|.-.|--.|++++|.+.|+.++...+. |...||-|...++...+.++|++.|++.++ +.|.-+- ...
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN 503 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN 503 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh
Confidence 467777788888888999999999999999987666 888999999999999999999999999987 6887543 233
Q ss_pred HHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 003725 686 LCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIV 762 (800)
Q Consensus 686 ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 762 (800)
|-.+|.. .|.+.+|...|-..+.+.-.-. =-..+..++..+|.+|=.++.-.++.|-+.+.
T Consensus 504 lgIS~mN---------------lG~ykEA~~hlL~AL~mq~ks~-~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 504 LGISCMN---------------LGAYKEAVKHLLEALSMQRKSR-NHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhh---------------hhhHHHHHHHHHHHHHhhhccc-ccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 4445544 5668888888877664321100 00112222456777777777777776655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.5e-05 Score=91.24 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003725 580 KLLTNLLIEGYNNKAFKLLDTMLKL----DAKP-SKTTYDKVIGALCLAGKIKWAHQVFDFLTR 638 (800)
Q Consensus 580 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 638 (800)
.+..++...|+.++|...+++.... +... ...+...+..++...|+.++|...+.++.+
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555566666666666655442 1111 122344555566666777777766666665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.6e-07 Score=86.79 Aligned_cols=151 Identities=16% Similarity=0.152 Sum_probs=100.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcC
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDAL----CKLG 417 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g 417 (800)
..+...|++++|++++... ..-......+.++.+.++++.|.+.++.|.+.. .| .+...+..++ .-.+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 3444556666666655431 111444555666666666666666666666542 22 2333344433 3344
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 003725 418 EVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSV-RDALDCL 496 (800)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~ 496 (800)
.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+.. +..++..++......|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 789999999998765 5568899999999999999999999999998876543 677777788887888887 6778888
Q ss_pred HHHHHC
Q 003725 497 KYMKKQ 502 (800)
Q Consensus 497 ~~~~~~ 502 (800)
.++.+.
T Consensus 260 ~qL~~~ 265 (290)
T PF04733_consen 260 SQLKQS 265 (290)
T ss_dssp HHCHHH
T ss_pred HHHHHh
Confidence 888875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-08 Score=61.38 Aligned_cols=33 Identities=42% Similarity=0.729 Sum_probs=30.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 735 GLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 735 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
|+.||..+||+||++||+.|++++|+++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677799999999999999999999999999983
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.1e-06 Score=83.14 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHH
Q 003725 309 FCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAI 388 (800)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 388 (800)
+.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+.+..+..+....++..+.-.|...|.-.+|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 344555555555555555442 1244455555555555555555555555555544444455555555555555555555
Q ss_pred HHHHHHHHC
Q 003725 389 KKFKEFKSM 397 (800)
Q Consensus 389 ~~~~~~~~~ 397 (800)
+.+++....
T Consensus 374 ~~L~~Wi~~ 382 (579)
T KOG1125|consen 374 KMLDKWIRN 382 (579)
T ss_pred HHHHHHHHh
Confidence 555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.3e-05 Score=75.98 Aligned_cols=131 Identities=8% Similarity=-0.014 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhc---CC----HHHHHH
Q 003725 317 EAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQM---GK----TSEAIK 389 (800)
Q Consensus 317 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~ 389 (800)
++..+++.+.+.. +-+..+|+...-++...|+++++++.++++++.++....+|+....++.+. |. .++.++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 3444444444332 123444444444444445555555555555554444444444433333322 11 123444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 390 KFKEFKSMGIFLDQVCYNVIMDALCKL----GEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYIL 450 (800)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 450 (800)
...++....+. |...|+.+...+... +...+|.+.+.+....++. +......|++.|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 44444444332 445555555555442 2234455555555443322 44555555555553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.5e-05 Score=74.74 Aligned_cols=204 Identities=9% Similarity=0.041 Sum_probs=110.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH--HHHH
Q 003725 312 NSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCG-NIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKT--SEAI 388 (800)
Q Consensus 312 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~ 388 (800)
.++.++|+.+..++.+.. +-+..+|+.....+...| ++++++..++++...+++...+|.....++.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 345566666666666542 112334444444444445 456666666666666555555555554444444442 4556
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHH
Q 003725 389 KKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILR---GKL----VDAIGLF 461 (800)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~~~ 461 (800)
.+++++.+.... +..+|+....++...|+++++++.++++.+.++. +...|+.....+.+. |.. ++++...
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 666666655443 5556666666666666666777777776665544 555555555444333 222 3455555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 462 KKMREMGHKPDIKAYNVLARGLAQY----GSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCT 520 (800)
Q Consensus 462 ~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (800)
.+++...+. |...|+-+...+... +...+|...+.+..+.+ +.++..+..|++.|+.
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 555554332 555666666555542 23345666666655543 3345556666666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-05 Score=73.40 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=120.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
+..|...|+++.+....+...... ..+...++.+++...+++..+.++. +...|..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL---------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc---------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 345777787777654443111111 0122356778888888888887765 788899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 595 FKLLDTMLKLDAKPSKTTYDKVIGAL-CLAGK--IKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDM 671 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 671 (800)
...+++..+.. +.+...+..+..++ ...|+ .++|..+++++.+.++. +...+..+...+.+.|++++|+..|+++
T Consensus 93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999876 45677788888764 67777 59999999999998777 8889999999999999999999999999
Q ss_pred HHcCCCCCHHHH
Q 003725 672 KLRGIKPDVVLY 683 (800)
Q Consensus 672 ~~~g~~pd~~~~ 683 (800)
++. ..|+...+
T Consensus 171 L~l-~~~~~~r~ 181 (198)
T PRK10370 171 LDL-NSPRVNRT 181 (198)
T ss_pred Hhh-CCCCccHH
Confidence 986 45665443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=58.26 Aligned_cols=33 Identities=39% Similarity=0.869 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 639 HGLIPDLISYTMLIHGFCKLNCLREACNIFKDM 671 (800)
Q Consensus 639 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 671 (800)
+|+.||..+|++||++||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367888888888888888888888888888887
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-05 Score=80.99 Aligned_cols=221 Identities=10% Similarity=0.021 Sum_probs=162.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003725 435 VPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMI 514 (800)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 514 (800)
+|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+-.++ +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444556667777788888888877654 3555677778888888888888777763 7888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKA 594 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 594 (800)
.+......-+++|.++++..... .-..+.......++++++.+.|+.-.+.++- ...+|.....+..+.++.+.|
T Consensus 464 GDv~~d~s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHH
Confidence 77776666778888877733222 1111222223467888888888887776543 567788888888888999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 595 FKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.+.|...+... +.+...||.+-.+|.+.|+-.+|...+.++.+.+.. +...|...+....+.|.+++|++.+.++.+
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99888887654 445667999999999999999999999999987644 667787777778899999999999988874
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.8e-05 Score=82.84 Aligned_cols=225 Identities=13% Similarity=0.034 Sum_probs=110.4
Q ss_pred ChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHH
Q 003725 86 DPGAALTFFELLK-ARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDA 164 (800)
Q Consensus 86 ~~~~A~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (800)
.|..|..|-..++ .+| ++..|-..+......+..++|+++.++++...+...-+ ---.+|.+
T Consensus 1440 ~pesaeDferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee--------------EKLNiWiA 1502 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE--------------EKLNIWIA 1502 (1710)
T ss_pred CCcCHHHHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH--------------HHHHHHHH
Confidence 4445555444443 121 33444444444445566666666666665553221100 01234455
Q ss_pred HHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLAR 244 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 244 (800)
+++.-..-|.-+...++|+++.+.. .....|..|...|.+.+.+++|.++++.|.+. +......|...+..+.++++
T Consensus 1503 ~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1503 YLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH
Confidence 5555555555555555666555432 12334555566666666666666666666433 22344555566666666666
Q ss_pred hhHHHHHHHHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003725 245 FEEAFDVLNEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLL 323 (800)
Q Consensus 245 ~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (800)
-+.|..+++.+++.=.. -........+..-.+.|+.+.+..+|+..... .|-....|+..++.-.+.|+.+.+..+|+
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 56666666555543111 01222333333344455555555555555544 23344455555555555555555555555
Q ss_pred HHHhCCCC
Q 003725 324 RMKQLRVT 331 (800)
Q Consensus 324 ~m~~~~~~ 331 (800)
+....++.
T Consensus 1659 Rvi~l~l~ 1666 (1710)
T KOG1070|consen 1659 RVIELKLS 1666 (1710)
T ss_pred HHHhcCCC
Confidence 55554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0023 Score=64.84 Aligned_cols=176 Identities=13% Similarity=0.043 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 454 LVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKP-NVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 454 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.+.....++++......--..+|..+++...+....+.|..+|.++.+.+..+ +..+.+++++.+| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44444555554433222122345555555555666666666666666655555 4445555555443 345566666666
Q ss_pred HHHhcc-Ccc-CHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC---
Q 003725 533 DDLKEK-CLE-NYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMR--SESCCKLLTNLLIEGYNNKAFKLLDTMLKLD--- 605 (800)
Q Consensus 533 ~~~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 605 (800)
--++.- +.+ --...++.+...++-..|..+|++....+..++ ...|..++.--..-|+...++++-+++...-
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 434322 222 234455555666666666666666666633332 2456666666666677777776666655431
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHH
Q 003725 606 AKPSKTTYDKVIGALCLAGKIKWAH 630 (800)
Q Consensus 606 ~~~~~~~~~~l~~~~~~~g~~~~A~ 630 (800)
..+....-..+++.|.-.+.+..-.
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccH
Confidence 1111122234455565555544333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00012 Score=81.86 Aligned_cols=186 Identities=16% Similarity=0.014 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhc
Q 003725 302 YTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQM 381 (800)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (800)
|.++++.-..-|.-+...++|+++.+.. ..-..|..|...|.+.+.+++|.++++.|.+.--....+|...+..+.+.
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 3334433333344444444444444321 11223344444444444444444444444433222224444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 382 GKTSEAIKKFKEFKSMGIF-LDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGL 460 (800)
Q Consensus 382 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (800)
.+.+.|..++.++.+.-+. -......-.+..-.+.|+.+.+..+|+......++ -...|+..|+.-.+.|+.+.+..+
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHH
Confidence 4444444444444332111 01122223333344555555555555555544322 345555555555555555555555
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH
Q 003725 461 FKKMREMGHKPD--IKAYNVLARGLAQYGSVR 490 (800)
Q Consensus 461 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 490 (800)
|++....++.|- -..|...+..--..|+-+
T Consensus 1657 feRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1657 FERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 555555544432 223444444434444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-05 Score=79.45 Aligned_cols=239 Identities=13% Similarity=0.053 Sum_probs=186.1
Q ss_pred CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003725 260 VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSA 339 (800)
Q Consensus 260 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 339 (800)
.+|-...-..+...+.+.|-...|..+++++. .|..+|.+|+..|+..+|..+..+-.+. +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 45566667778888999999999999998654 5677899999999999999998888773 789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 340 LISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEV 419 (800)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 419 (800)
+.+.....--+++|.++.+..... +-..+.....+.++++++.+.|+.-.+...- -..+|-.+.-+..+.+++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhh
Confidence 999888888889999998776443 2233333344578999999999887766543 466787888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 420 EEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 499 (800)
..|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+.. +...|-..+-...+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999876433 5689999999999999999999999999988744 5555666666778999999999999988
Q ss_pred HHCCC-CCCHHHHHHHHHHH
Q 003725 500 KKQGV-KPNVITHNMIIEGL 518 (800)
Q Consensus 500 ~~~~~-~~~~~~~~~l~~~~ 518 (800)
.+... .-|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 75421 12444555555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-05 Score=72.36 Aligned_cols=128 Identities=9% Similarity=0.119 Sum_probs=80.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH-hccCCCCCCC
Q 003725 623 AGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV-VLYTILCDAY-SKINKRGSSS 700 (800)
Q Consensus 623 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~ll~~~-~~~~~~~~~~ 700 (800)
.++.+++...++...+.++. |...|..+...|...|++++|...|++.... .|+. ..+..+..++ ...|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g------ 122 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAG------ 122 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC------
Confidence 45556666666666655544 6667777777777777777777777776653 4433 3333333332 2211
Q ss_pred CCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003725 701 SPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIY 778 (800)
Q Consensus 701 ~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 778 (800)
....++|.+++++..+.+.. +..++..++..+.+.|++++|+..|+++.+. .+|+..-+
T Consensus 123 -------~~~~~~A~~~l~~al~~dP~-----------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 123 -------QHMTPQTREMIDKALALDAN-----------EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred -------CCCcHHHHHHHHHHHHhCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 11135677777766654433 7778888888999999999999999999864 45555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0058 Score=66.01 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=137.5
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCCh
Q 003725 203 QLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKAL--CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRL 280 (800)
Q Consensus 203 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 280 (800)
-....+++..|+.....+.+. .||. .|..+++++ .+.|+.++|..+++.....+.. |..|...+-.+|...|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 345677888888888888765 3554 344444544 4788899999888887665544 778888888888889999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------H
Q 003725 281 DVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCG-N---------I 350 (800)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~---------~ 350 (800)
++|..+++...+. -|+......+..+|.+.+.+.+-.+.=-++-+. .+.+...+=++++.+...- . .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999888876 455777777788888887776544443333332 2223343333444433221 1 1
Q ss_pred HHHHHHHHHHHHCCCCch--HHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 351 IKALSLHGEMTSIGIKTN--YVVSVILKCLCQMGKTSEAIKKF-KEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFN 427 (800)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (800)
.-|.+.++.+.+.+.+.. .-.......+...|++++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 234445555554441111 22333344455666777777776 333333333344444555666667777777777777
Q ss_pred HHHhCCC
Q 003725 428 EMEGRQI 434 (800)
Q Consensus 428 ~~~~~~~ 434 (800)
++..+|.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 7666643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-05 Score=69.16 Aligned_cols=116 Identities=9% Similarity=-0.089 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003725 561 QFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHG 640 (800)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 640 (800)
.++++.++.+ +..+......+...|++++|...++..+... +.+...+..+..++...|++++|...|+.+...+
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445554443 3345567788888999999999999988776 5677888899999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003725 641 LIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYT 684 (800)
Q Consensus 641 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 684 (800)
+. +...+..+..++.+.|++++|...|++.++ +.|+...+.
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 65 888899999999999999999999999987 467765554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.38 E-value=8e-05 Score=72.06 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---H
Q 003725 297 LNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD----KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---Y 369 (800)
Q Consensus 297 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 369 (800)
.....+..+...+...|++++|...|+++.+.. |+ ...+..+...+...|++++|...++++.+..+... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345667777777778888888888888777643 22 13556667777778888888888887776655433 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHC
Q 003725 370 VVSVILKCLCQM--------GKTSEAIKKFKEFKSM 397 (800)
Q Consensus 370 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~ 397 (800)
++..+..++.+. |+.++|.+.++++...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 344444444433 4445555555554443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00036 Score=64.00 Aligned_cols=217 Identities=15% Similarity=0.111 Sum_probs=118.8
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARF 245 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 245 (800)
++-+.-.|.+..++..-....... .+...--.+.++|...|++..... +++... .|.......+...+..-++-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 345555677877777655544332 344455556677888777654433 333221 23444444443333334443
Q ss_pred hHHH-HHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003725 246 EEAF-DVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLR 324 (800)
Q Consensus 246 ~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (800)
++-+ ++.+.+.......+......-...|+..|++++|++.+.... +......=+..+.+..+++-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 444555544434343444444556778888888888776521 233444445566777888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 325 MKQLRVTPDKYVYSALISGYCK----CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSM 397 (800)
Q Consensus 325 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 397 (800)
|.+. .+..|.+.|..++.+ .+.+..|.-+|++|.+.-.+...+.+-...++...|++++|..+++.....
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8874 356677766666654 345666666666666543333244444444444444444444444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00013 Score=81.06 Aligned_cols=241 Identities=9% Similarity=-0.002 Sum_probs=156.5
Q ss_pred CCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003725 364 GIKTN--YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANY 441 (800)
Q Consensus 364 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (800)
+..|. ..+..++..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+.+.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv---------------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL---------------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh----------------
Confidence 34444 78888888888889999999888876665433 233333344466666665554444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 442 TTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTS 521 (800)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (800)
.++.......++.-...+...|... .-+..++..+..+|-+.|+.++|..+++++++.. +-|+.+.+.+...|...
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 2233333334443333444444443 2245578889999999999999999999999987 77888999999999999
Q ss_pred CCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 522 GRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM 601 (800)
Q Consensus 522 g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 601 (800)
++++|.+++.+.+ ..|...+++..+.++|.++....+. +...+ ..+.+.+
T Consensus 164 -dL~KA~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~ki 213 (906)
T PRK14720 164 -DKEKAITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERKV 213 (906)
T ss_pred -hHHHHHHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHHH
Confidence 9999999988543 3367777888999999988877544 22222 2222333
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003725 602 LKL-DAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFC 656 (800)
Q Consensus 602 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 656 (800)
... +..--..++.-+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222 21222334444555666677777777777777776555 5555556666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0045 Score=62.85 Aligned_cols=422 Identities=11% Similarity=0.080 Sum_probs=229.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 226 SLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAV 305 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (800)
+-|+.+|..||+-+..+ .++++.+.++++... ++-....|..-|..-.+.++++....+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 46888999999877655 899999999998764 2335678888899989999999999999988776 3456666666
Q ss_pred HHHHHh-cCChHH----HHHHHHHHH-hCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCchH
Q 003725 306 IREFCQ-NSRLVE----AESVLLRMK-QLRVTPDK-YVYSALISG---------YCKCGNIIKALSLHGEMTSIGIKTNY 369 (800)
Q Consensus 306 i~~~~~-~g~~~~----A~~~~~~m~-~~~~~p~~-~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~ 369 (800)
+.--.+ .|+... ..+.|+-.. +.|+.+-. ..|+..+.- |..+.+++...+++.++...-+
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm---- 168 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM---- 168 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc----
Confidence 654433 233322 223333333 33433322 223333322 1222334445555555544322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHH--------
Q 003725 370 VVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEG--RQIVPDVA-------- 439 (800)
Q Consensus 370 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-------- 439 (800)
+++++..+-|...... .|..|-.-++. -+...+-.|.++++++.. +|......
T Consensus 169 ------------~nlEkLW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 169 ------------HNLEKLWKDYEAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred ------------ccHHHHHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 2222222222221111 11111111111 122234445555555432 12111111
Q ss_pred -------HHHHHHHHHHhcC------CH--HHHHHHHHHH-HHcCCCCCHHHH-HH----HHHHHHhcCC-------HHH
Q 003725 440 -------NYTTVIDGYILRG------KL--VDAIGLFKKM-REMGHKPDIKAY-NV----LARGLAQYGS-------VRD 491 (800)
Q Consensus 440 -------~~~~li~~~~~~g------~~--~~A~~~~~~~-~~~~~~p~~~~~-~~----l~~~~~~~g~-------~~~ 491 (800)
.|-.+|..=-.++ .. ....-.+++. .-.+..|+..-. .. .-+.+...|+ .++
T Consensus 232 ~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 1222222111111 00 0111111111 112222322110 00 1112222333 455
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhccC---ccCHHHHHHHHHccCCHHHHHHHHHH
Q 003725 492 ALDCLKYMKKQGVKPNVITHNMIIEGLCTS---GRVKEARAFFDDDLKEKC---LENYSAMVDGYCEANHLEEAFQFFMT 565 (800)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (800)
+..+++..++.-..-+..++..+...-... +..+.....+++.+...+ .-.|..+++.-.+..-...|..+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 666666555432222333333332211111 124445555554333222 22388889988899999999999999
Q ss_pred HHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003725 566 LSQRGFLM-RSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPD 644 (800)
Q Consensus 566 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 644 (800)
+.+.+..+ ...+.++++. |...++..-|..+|+--++.- ..++.--...++-+...++-+.|+.+|++....++.||
T Consensus 392 aR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 392 AREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 99988776 3333444444 555788999999999766542 34455556777888899999999999999998755554
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 645 --LISYTMLIHGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 645 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
...|..++.--..-|+...++++-+++...
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 578999999888999999999998887653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.6e-05 Score=71.50 Aligned_cols=186 Identities=10% Similarity=0.032 Sum_probs=116.6
Q ss_pred cChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HH
Q 003725 262 LHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNA---FAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDK--YV 336 (800)
Q Consensus 262 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~ 336 (800)
.....+..+...+...|++++|...++++.+.. +.+. .++..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 455677888888999999999999999998763 2222 46778888999999999999999999875322111 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003725 337 YSALISGYCKC--------GNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNV 408 (800)
Q Consensus 337 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 408 (800)
+..+..++... |++++|.+.++.+....+........+..... .... . ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 55555556554 78899999999998776554322211111100 0000 0 001123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 409 IMDALCKLGEVEEAVKLFNEMEGRQI--VPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
+...|.+.|++++|...++....... +.....+..+...+...|++++|...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666777777776666665421 11235566666666666666666666666554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=66.22 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003725 372 SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILR 451 (800)
Q Consensus 372 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 451 (800)
......+...|+-+....+..+...... .|....+..+....+.|++..|+..+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 3344445555555555555444332222 244455556777777777777777777776653 34777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 452 GKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFF 531 (800)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 531 (800)
|+++.|..-|.+..+.... +...++.|...+.-.|+.+.|..++......+ .-+..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777765322 45566777777777777777777777777664 335566666666777777777777766
Q ss_pred H
Q 003725 532 D 532 (800)
Q Consensus 532 ~ 532 (800)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 5
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00017 Score=66.22 Aligned_cols=153 Identities=16% Similarity=0.071 Sum_probs=68.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003725 272 QGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNII 351 (800)
Q Consensus 272 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 351 (800)
..+...|+-+....+....... .+.+.......+....+.|++.+|+..+++..... ++|...|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3333444444444444333222 12233333344444455555555555555544432 344555555555555555555
Q ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 352 KALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFN 427 (800)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (800)
.|..-|.+..+..+..+...+.+...+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++..
T Consensus 152 ~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555544443333344444444444444444444444444433322 23333334444444555555554443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00059 Score=62.70 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 003725 372 SVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYIL- 450 (800)
Q Consensus 372 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 450 (800)
......|++.|++++|++..+... +......=+..+.+..+++-|.+.++.|.+- -+..+.+-|..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKL 182 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHH
Confidence 334445566666666666655421 2222233344455666777777777777764 245566656655553
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 451 ---RGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEA 527 (800)
Q Consensus 451 ---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 527 (800)
.+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++....+. ..++.+...++.+-.-.|...++
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHH
Confidence 34577777778777653 45677777777777777888888888888777764 44566666555555555555444
Q ss_pred H
Q 003725 528 R 528 (800)
Q Consensus 528 ~ 528 (800)
.
T Consensus 261 ~ 261 (299)
T KOG3081|consen 261 T 261 (299)
T ss_pred H
Confidence 3
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00027 Score=78.58 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=137.6
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHH
Q 003725 192 WSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQF-TYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTI 270 (800)
Q Consensus 192 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 270 (800)
.+...+..|+..+...+++++|.++.++..+. .|+.. .|-.+.-.+.+.++.+++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 35678888999998999999999999877664 35543 333344456667776666555 2222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNI 350 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 350 (800)
......++.....+...+... .-+..++..+..+|-+.|+.++|..+++++.+.. +-|..+.+.+...|+.. ++
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred --hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 222223332222333333332 2345577778888888888888888888888876 44777788888888888 88
Q ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 351 IKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEME 430 (800)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (800)
++|.+++.+.... +...+++..+.+++.++....+. +. +.-..+.+.+.
T Consensus 166 ~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~-d~----------------d~f~~i~~ki~ 214 (906)
T PRK14720 166 EKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSD-DF----------------DFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcc-cc----------------hHHHHHHHHHH
Confidence 8888888776653 44555666666666666554322 11 11122222222
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003725 431 GR-QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLA 484 (800)
Q Consensus 431 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (800)
.. |..--..++-.+-..|-..++++++..+++.+++...+ |..+..-++..|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11 11112333444444455555566666666666554332 4444444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00038 Score=76.76 Aligned_cols=147 Identities=9% Similarity=0.005 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 331 TPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIM 410 (800)
Q Consensus 331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 410 (800)
..+...+..|.......|.+++|..+++...+..+....+...++.++.+.+++++|+..+++.....+. +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 4467788888888888888888888888888877766688888888888888888888888888877665 566677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003725 411 DALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLA 480 (800)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 480 (800)
.++.+.|++++|..+|+++...+.. +..++..+...+...|+.++|...|++..+.. .|....|+.++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8888888888888888888874332 56778888888888888888888888887652 23445555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00024 Score=71.15 Aligned_cols=83 Identities=17% Similarity=0.044 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 609 SKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCD 688 (800)
Q Consensus 609 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 688 (800)
|+.........+.+.|+.++|.+.++.++...+. ....+-.+..+|.+.|+..+|+..+++.... .+-|...|..|..
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAq 416 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQ 416 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHH
Confidence 3333444445555556666666666555554322 2444455555555666666666665555543 2444555555555
Q ss_pred HHhcc
Q 003725 689 AYSKI 693 (800)
Q Consensus 689 ~~~~~ 693 (800)
+|...
T Consensus 417 ay~~~ 421 (484)
T COG4783 417 AYAEL 421 (484)
T ss_pred HHHHh
Confidence 55553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.2e-05 Score=66.73 Aligned_cols=108 Identities=13% Similarity=0.002 Sum_probs=77.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCL 622 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 622 (800)
+..+...+...|++++|...|+.+...++. +...+..+..++...|++++|+..|++.++.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 444555666777777777777777766554 66677777777888888888888888887765 4566777778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003725 623 AGKIKWAHQVFDFLTRHGLIPDLISYTMLIH 653 (800)
Q Consensus 623 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 653 (800)
.|++++|...|+...+..+. +...|.....
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~ 134 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYA-DASWSEIRQN 134 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 88888888888888875444 4555544433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0016 Score=65.42 Aligned_cols=200 Identities=17% Similarity=0.111 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHhCC--CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 245 FEEAFDVLNEMNKAG--VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVL 322 (800)
Q Consensus 245 ~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (800)
+.++...-+.+...+ -.|+...+...+.+......-..+..++.+..+. -.........-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 344444444443322 1233444444444444333333333333333331 12233333444455677777888777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 323 LRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLD 402 (800)
Q Consensus 323 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 402 (800)
+.+...- +-|...+......+.+.++..+|.+.++.+....+........+..++.+.|+..+|+.+++......+. |
T Consensus 330 ~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-d 407 (484)
T COG4783 330 QPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-D 407 (484)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-C
Confidence 7776642 2344444555677777777888877777777765544466666777777777777777777777665544 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 403 QVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
+..|..|..+|...|+..++..-..+ .|...|++++|...+....+.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 77777777777777776666554443 344567777777777766554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0045 Score=64.58 Aligned_cols=215 Identities=16% Similarity=0.136 Sum_probs=141.3
Q ss_pred ChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHhcCC
Q 003725 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN-GIPL--------NAFAYTAVIREFCQNSR 314 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~ 314 (800)
.+++|.+..+. .|.+..|..+.......-.++.|...|-+...- |++. +...-.+-+.+ --|+
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~ 749 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGE 749 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcc
Confidence 34555555443 588889999988888888888887777655432 2211 11111122222 3588
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHH
Q 003725 315 LVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKF 391 (800)
Q Consensus 315 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~ 391 (800)
+++|+++|-+|.... ..|..+.+.|||-...++++.-.. +.... .++..+...+.....+++|.+.|
T Consensus 750 feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred hhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876542 236777888998887777654221 11111 68889999999999999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003725 392 KEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP 471 (800)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 471 (800)
..-... ...+.++.+..++++-+.+-..+.+ +....-.+..++...|.-++|.+.|-+... |
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p 881 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P 881 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC----c
Confidence 654321 2356777777777766665555433 556677788899999999999887755432 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 472 DIKAYNVLARGLAQYGSVRDALDCLKYM 499 (800)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 499 (800)
...+..|...+++.+|.++-+..
T Consensus 882 -----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 882 -----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 22456677888888888876654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00055 Score=75.52 Aligned_cols=235 Identities=14% Similarity=0.118 Sum_probs=165.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003725 228 NQFTYDIVIKALCKLARFEEAF-DVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVI 306 (800)
Q Consensus 228 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 306 (800)
++.....+=.+...-|..++|- +++.++.+ ++....+.....+++.-+..+.. ..+.++.++-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 3444444445556667776663 44444432 22333333333333333333333 3566789999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHH
Q 003725 307 REFCQNSRLVEAESVLLRMKQLRVTPD-KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTS 385 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 385 (800)
....+.|++++|+.+++...+. .|| ......++..+.+.+++++|+...++.....+........+..++.+.|+++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH
Confidence 9999999999999999999986 454 5567788899999999999999999999988887799999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 386 EAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465 (800)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (800)
+|..+|+++...+.. +..++..+..++.+.|+.++|...|+...+.. .+....|+..+. +...-..+++.+.
T Consensus 172 ~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 999999999985443 57888899999999999999999999998752 234455555443 3344455565553
Q ss_pred HcC----CCCCHHHHHHHHHHHHh
Q 003725 466 EMG----HKPDIKAYNVLARGLAQ 485 (800)
Q Consensus 466 ~~~----~~p~~~~~~~l~~~~~~ 485 (800)
-.+ ..........++.-+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 244 VEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred cccccCCCceeeeeHHHHHHHHhh
Confidence 332 22233445555554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.3e-05 Score=65.82 Aligned_cols=122 Identities=14% Similarity=0.031 Sum_probs=93.4
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003725 562 FFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGL 641 (800)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 641 (800)
.++++....+. +......+...+...|+.++|.+.++.+...+ +.+...+..+...+...|++++|..+++...+.++
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444333 33455667777888899999999998888765 45777888888999999999999999999888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 642 IPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCD 688 (800)
Q Consensus 642 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 688 (800)
. +...+..+..+|...|++++|...|++.++. .|+...+..+..
T Consensus 83 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 83 D-DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 4 6777888888999999999999999999874 677665544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0026 Score=58.19 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHccC---CC-CccCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCChh
Q 003725 173 RMFDQALNVLFQTDR---PG-FVWSKFT-CNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIV-IKALCKLARFE 246 (800)
Q Consensus 173 ~~~~~A~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~ 246 (800)
.+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++++..+ + |...-...+ .-.+--.|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 455555555555432 12 2233322 233333444455555555555555433 1 222111111 11122245555
Q ss_pred HHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003725 247 EAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMK 326 (800)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (800)
+|.++|+.+++.+ +.|..++.--+...-..|+--+|++-+.+..+. +..|..+|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 5555555555443 223344444444444444444444444444443 33444455555555555555555554444444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0027 Score=58.03 Aligned_cols=187 Identities=11% Similarity=0.083 Sum_probs=110.8
Q ss_pred CChhHHHHHHHHHH---hCC-CCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchH
Q 003725 85 KDPGAALTFFELLK---ARG-FRHNV-HTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFY 159 (800)
Q Consensus 85 ~~~~~A~~~f~~~~---~~~-~~~~~-~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (800)
+++++-++++..+. ..| ..++. ..|..++-+....|+..-|...+..+..+.+. +.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-------------------S~ 86 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-------------------SK 86 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-------------------Ch
Confidence 56777777777765 334 45554 33444444445567777777777666555321 12
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 003725 160 RVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKAL 239 (800)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 239 (800)
++-..-.-.+-..|++++|.++|+.+.+.+ +.|..++-.-+..+-..|+--+|++-+.+..+. +..|...|.-+...|
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIY 164 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 222222223334577777777777777765 456666666666666667666666666665544 456777777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcC---ChhHHHHHHHHHHhC
Q 003725 240 CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENG---RLDVGYDLLLKWSEN 293 (800)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 293 (800)
...|++++|.-.++++.-.. +.++..+..+...+.-.| +++.+.+++.+..+.
T Consensus 165 ~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 77777777777777776543 223344444444444333 444556666666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=7e-06 Score=51.42 Aligned_cols=35 Identities=43% Similarity=0.878 Sum_probs=33.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNI 775 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 775 (800)
.+||+++.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00039 Score=60.31 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR 465 (800)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 465 (800)
+..+...+...|++++|..+++.....+. .+...+..+...|...|++++|...|+...
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333344444444444443333321 123333333334444444444444444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00027 Score=71.75 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=97.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003725 544 SAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLA 623 (800)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (800)
..|+..+...++++.|+++++++.+.. +.....++..+...++..+|++++.+.++.. +.+...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677888888888887775 2345557777777788888888888888654 44666666677788999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 624 GKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 624 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
++++.|..+.+++.+..+. +..+|..|..+|.+.|++++|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999987555 778999999999999999999999998863
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=49.79 Aligned_cols=33 Identities=48% Similarity=0.902 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMKLRGIKPD 679 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 679 (800)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00082 Score=58.91 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 409 IMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFK 462 (800)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (800)
+...+...|++++|+..++..... ......+....+.|.+.|++++|...|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444445555555544432221 1122333334444445555555544444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.8e-05 Score=48.20 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEP 773 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 773 (800)
.+|+.++++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0013 Score=57.75 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=61.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHH
Q 003725 312 NSRLVEAESVLLRMKQLRVTPD---KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTS 385 (800)
Q Consensus 312 ~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 385 (800)
.++...+...++.+.+... .+ ....-.+...+...|++++|...|+.+......+. .+...+..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555321 11 12222334555566666666666666665553333 33444556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 386 EAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNE 428 (800)
Q Consensus 386 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (800)
+|+..++...... .....+....++|.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666665532222 2334455666677777777777777665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00059 Score=69.35 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 003725 513 MIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNN 592 (800)
Q Consensus 513 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 592 (800)
.|+..+...++++.|..+|+ .+...++.....++..+...++-.+|.+++++.+...+. +...+..-...+...++++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle-~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLE-KLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHH-HHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHH
Confidence 33444444556666666666 444444445555566666666666667766666655433 4555555666778888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003725 593 KAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR 638 (800)
Q Consensus 593 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 638 (800)
.|+++.+++.+.. +.+..+|..|..+|...|+++.|+..++.+.-
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888764 44556899999999999999999988887653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.2e-05 Score=47.89 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003725 646 ISYTMLIHGFCKLNCLREACNIFKDMKLRGIKP 678 (800)
Q Consensus 646 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 678 (800)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.066 Score=53.62 Aligned_cols=454 Identities=15% Similarity=0.152 Sum_probs=231.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHh
Q 003725 275 CENGRLDVGYDLLLKWSENGIPLNAF------AYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALIS--GYCK 346 (800)
Q Consensus 275 ~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~ 346 (800)
-+.+++.+|.++|.++.+.- ..++. .-+.++++|.. ++.+.....+....+. .| ...|-.|.. .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 46788889999998887752 22222 23445566553 3455555555555543 12 222333332 2356
Q ss_pred cCCHHHHHHHHHHHHHC--CCCch-------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 003725 347 CGNIIKALSLHGEMTSI--GIKTN-------------YVVSVILKCLCQMGKTSEAIKKFKEFKSM----GIFLDQVCYN 407 (800)
Q Consensus 347 ~g~~~~A~~~~~~~~~~--~~~~~-------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 407 (800)
.+.+.+|.+.+..-... +..+. ..-...+.++...|.+.++..+++++... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888887665544 22221 11134556677777777777777766543 3446677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003725 408 VIMDALCKLGEVEEAVKLFNEMEG---RQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLA 484 (800)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (800)
.++-.+.+. .|-++++ .++-|| |-.++..|.+.=..-++ -.-..+.|.......++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHH
Confidence 766555542 2222211 122222 22333333322111110 000112233333333333332
Q ss_pred hc--CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH-------HhccCccCHHHHHHHHHccC
Q 003725 485 QY--GSVRDALDCLKYMKKQGVKPNVI-THNMIIEGLCTSGRVKEARAFFDDD-------LKEKCLENYSAMVDGYCEAN 554 (800)
Q Consensus 485 ~~--g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~~l~~~~~~~g 554 (800)
-. .+..--.++++.....-+.|+.. +...+...+.+ +.+++..+.+.. +.+.-...+..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11122223333333334455533 33344444433 455555554421 12223344777788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHH-------HHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHH
Q 003725 555 HLEEAFQFFMTLSQRGFLMRSESCCK-------LLTNLL----IEGYNNKAFKLLDTMLKLDAKPSKTTYDKV---IGAL 620 (800)
Q Consensus 555 ~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~ 620 (800)
+..+|...+.-+.-.++.. ..-.. +-...+ ..-+...-+.+|+.....++.. ......| ..-+
T Consensus 313 ~T~~a~q~l~lL~~ldp~~--svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDPRI--SVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhcCCcc--hhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHH
Confidence 8888888877666544321 11111 111111 1122344456666665544321 1112222 2335
Q ss_pred HhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 621 CLAGK-IKWAHQVFDFLTRHGLIPDLISYTMLIH----GFCK---LNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 621 ~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
.+.|. -++|..+++.+.+.... |...-|.... .|.+ ...+.+-..+-+-+.+.|+.|-.+.=.-+.+-++.
T Consensus 390 W~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 56666 78889999888874322 5554444332 2221 12223333333344466777765544333333322
Q ss_pred cCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 693 INKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLE 772 (800)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 772 (800)
+.- +...|++.++.-.-..+.+ +.| .+.+|-.++-++....+++||.+++.+ ++
T Consensus 469 AEy---------Lysqgey~kc~~ys~WL~~--iaP----------S~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP 522 (549)
T PF07079_consen 469 AEY---------LYSQGEYHKCYLYSSWLTK--IAP----------SPQAYRLLGLCLMENKRYQEAWEYLQK-----LP 522 (549)
T ss_pred HHH---------HHhcccHHHHHHHHHHHHH--hCC----------cHHHHHHHHHHHHHHhhHHHHHHHHHh-----CC
Confidence 110 2345667777666555553 444 899999999999999999999999887 47
Q ss_pred CCHHHHHHHH
Q 003725 773 PNIVIYKALL 782 (800)
Q Consensus 773 p~~~~~~~l~ 782 (800)
|+..++++-+
T Consensus 523 ~n~~~~dskv 532 (549)
T PF07079_consen 523 PNERMRDSKV 532 (549)
T ss_pred CchhhHHHHH
Confidence 7777776544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.001 Score=68.11 Aligned_cols=88 Identities=10% Similarity=-0.012 Sum_probs=41.2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003725 549 GYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKW 628 (800)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 628 (800)
.+...|++++|+++|+++++.++. +...+..+..++...|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 344445555555555555544433 33344444444444455555555555444433 2233344444444444455555
Q ss_pred HHHHHHHHHH
Q 003725 629 AHQVFDFLTR 638 (800)
Q Consensus 629 A~~~~~~~~~ 638 (800)
|...|+.+.+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555544444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.019 Score=56.53 Aligned_cols=267 Identities=13% Similarity=0.074 Sum_probs=148.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHH
Q 003725 85 KDPGAALTFFELLKARGFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDA 164 (800)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (800)
.++..|+..+..+.+-.+. +..-|..-+..+...|+++++..-.+..++..+... .....
T Consensus 63 k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~-------------------k~~~r 122 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS-------------------KGQLR 122 (486)
T ss_pred hhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-------------------ccccc
Confidence 5678888888888755433 466666666666666777776655544333322111 11122
Q ss_pred HHHHHHccCChHHHHHH---------------HHHccCCCC-ccCHHHHHHH-HHHHHHcCChhHHHHHHHHHHhCCCCC
Q 003725 165 MVKAYCSERMFDQALNV---------------LFQTDRPGF-VWSKFTCNFF-MNQLLKCGEVDMVLVLYEEMKSVGFSL 227 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~---------------~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~~ 227 (800)
.-+++...++..+|... ++....... +|.-..+..+ ..++.-.|+++.|..+--.+++..
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--- 199 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--- 199 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---
Confidence 22222222333333222 222222211 2333333333 334566777777777776666542
Q ss_pred CHHhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 228 NQFTYDIVIKALC--KLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAV 305 (800)
Q Consensus 228 ~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (800)
....+...+++.| -.++.+.|...|++.+..+ |+...- +..-...+.++.+.+.|
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~s----------k~~~~~~k~le~~k~~g----------- 256 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKS----------KSASMMPKKLEVKKERG----------- 256 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhH----------HhHhhhHHHHHHHHhhh-----------
Confidence 2223333343333 4667777777777776654 332211 11111223334444443
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC
Q 003725 306 IREFCQNSRLVEAESVLLRMKQL---RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG 382 (800)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 382 (800)
.-..+.|.+..|.+.|.+.+.. ++.|+...|.....+..+.|+..+|+.-.+...+.+..--..+..-..++...+
T Consensus 257 -N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 -NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred -hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 3455788888888888887764 344556667666777778888888888887777654333355566666777778
Q ss_pred CHHHHHHHHHHHHHCC
Q 003725 383 KTSEAIKKFKEFKSMG 398 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~ 398 (800)
++++|.+-+++..+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888887776553
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.7e-05 Score=45.23 Aligned_cols=31 Identities=45% Similarity=0.775 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGL 771 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 771 (800)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.044 Score=54.09 Aligned_cols=92 Identities=9% Similarity=-0.021 Sum_probs=61.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC---CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003725 547 VDGYCEANHLEEAFQFFMTLSQRGF---LMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLA 623 (800)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 623 (800)
..-..+.|++..|.+.|.+.+..++ .++...|.....+..+.|+.++|+.--++.++.+. .=...|..-..++...
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~l 334 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLAL 334 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHH
Confidence 3445678889999999988876543 34455566666777888999999888888775430 0111233333455567
Q ss_pred CChHHHHHHHHHHHHC
Q 003725 624 GKIKWAHQVFDFLTRH 639 (800)
Q Consensus 624 g~~~~A~~~~~~~~~~ 639 (800)
+++++|.+-++...+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7888888888877764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00074 Score=63.49 Aligned_cols=104 Identities=16% Similarity=0.090 Sum_probs=85.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 663 (800)
-+.+.+++.+|+..|.++++.. +.|.+.|..-..+|++.|.++.|++-.+..+..++. -...|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4567788888888888888875 567777888888999999999999988888886554 56788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 003725 664 ACNIFKDMKLRGIKPDVVLYTILCDAYS 691 (800)
Q Consensus 664 A~~~~~~m~~~g~~pd~~~~~~ll~~~~ 691 (800)
|++.|++.++ +.|+..+|..-+..-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHHH
Confidence 9999999986 7899888866555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0094 Score=59.07 Aligned_cols=146 Identities=15% Similarity=0.186 Sum_probs=83.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHcc-CCHHHHHHHHHHHHHc----CC-CCChhcHHHHHHHHHhc
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEA-NHLEEAFQFFMTLSQR----GF-LMRSESCCKLLTNLLIE 588 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~ 588 (800)
+..|...|++..|-+.+. .+...|... |++++|++.|++..+. +. ..-...+..+...+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLK------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHH------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 345566666666655554 244555555 6667777666665532 10 00123455667778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-----HH-HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHh-
Q 003725 589 GYNNKAFKLLDTMLKLDAKPS-----KT-TYDKVIGALCLAGKIKWAHQVFDFLTRH--GLIPD--LISYTMLIHGFCK- 657 (800)
Q Consensus 589 g~~~~A~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~li~~~~~- 657 (800)
|++++|+++|++........+ .. .+...+-++...||+..|...++..... ++..+ ......|+.++-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 888888888888876533211 11 2233344666789999999999988753 33322 3445666766543
Q ss_pred -cCCHHHHHHHHHHHH
Q 003725 658 -LNCLREACNIFKDMK 672 (800)
Q Consensus 658 -~g~~~~A~~~~~~m~ 672 (800)
...+.+|+.-|+.+.
T Consensus 249 D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -CCCHHHHCHHHTTSS
T ss_pred CHHHHHHHHHHHcccC
Confidence 345777777777764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00091 Score=52.77 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=59.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHccCCCC-ccCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHhCCCCCCHHh
Q 003725 161 VSDAMVKAYCSERMFDQALNVLFQTDRPGF-VWSKFTCNFFMNQLLKCG--------EVDMVLVLYEEMKSVGFSLNQFT 231 (800)
Q Consensus 161 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~ 231 (800)
+....|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345566677777888888888888888888 788888888888877653 23345667777777777777777
Q ss_pred HHHHHHHHHh
Q 003725 232 YDIVIKALCK 241 (800)
Q Consensus 232 ~~~li~~~~~ 241 (800)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7777766654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0014 Score=52.49 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 578 CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657 (800)
Q Consensus 578 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 657 (800)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3445556666777777777777776654 334456667777788888888888888888775444 45677778888888
Q ss_pred cCCHHHHHHHHHHHHH
Q 003725 658 LNCLREACNIFKDMKL 673 (800)
Q Consensus 658 ~g~~~~A~~~~~~m~~ 673 (800)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888888765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00066 Score=69.24 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=84.8
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHHHccCCC--CccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHH
Q 003725 156 NVFYRVSDAMVKAYCSERMFDQALNVLFQTDRPG--FVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYD 233 (800)
Q Consensus 156 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 233 (800)
+++......++..+....+++.+..++.+.+... ...-..+..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3444555666777777777777777777766541 11123344577888888888888888887777788888888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc
Q 003725 234 IVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (800)
.|+..+.+.|++..|.++...|...+.-.+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888877776666555666666666665554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.092 Score=55.30 Aligned_cols=137 Identities=11% Similarity=0.053 Sum_probs=59.7
Q ss_pred HHHHHHccCChHHHHHHHHHccCC-CCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 003725 165 MVKAYCSERMFDQALNVLFQTDRP-GFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLA 243 (800)
Q Consensus 165 ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 243 (800)
.|..+.+.|+|-+..++++.--.. +...-..+++.+...+.....|++|.+.|..-.. . ...+.++.+..
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le 836 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLE 836 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHH
Confidence 344444455555555544331110 0011123455555555555555555555543211 1 12334444444
Q ss_pred ChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003725 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLL 323 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (800)
.+++-..+-..+ +-+....-.+...+.+.|.-++|.+.+-+. +.+ .+-+..|...+++.+|.++-+
T Consensus 837 ~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 837 LFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 444433333322 224444555566666666666555544321 111 123444555555666655544
Q ss_pred H
Q 003725 324 R 324 (800)
Q Consensus 324 ~ 324 (800)
.
T Consensus 903 ~ 903 (1189)
T KOG2041|consen 903 R 903 (1189)
T ss_pred h
Confidence 3
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0014 Score=66.98 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 407 NVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLAR 481 (800)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 481 (800)
.++++.|.+.|..++++.+++.=...|+-||..+++.|++.+.+.|++..|.++..+|...+...+..|+..-+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY 181 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 344555555555555555555544445555555555555555555555555555444443333333333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.6e-05 Score=44.54 Aligned_cols=30 Identities=43% Similarity=0.933 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMKLRGI 676 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 676 (800)
+|++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888887664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.029 Score=53.77 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 478 VLARGLAQYGSVRDALDCLKYMKKQ--GVKPNVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 478 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.+..-|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3445566677777777777777764 222334455566667777777777766655
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.14 Score=51.48 Aligned_cols=447 Identities=11% Similarity=0.126 Sum_probs=218.7
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHH--HHHh
Q 003725 205 LKCGEVDMVLVLYEEMKSVGFSLN------QFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQ--GLCE 276 (800)
Q Consensus 205 ~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 276 (800)
-+++++.+|..+|..+.+.. ..+ ...-+.++++|.. ++.+.....+....+.. | ...|-.+.. .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 34555555555555553221 111 1123345555554 34444444444444421 2 122222222 2346
Q ss_pred cCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHH
Q 003725 277 NGRLDVGYDLLLKWSEN--GIPL------------NAFAYTAVIREFCQNSRLVEAESVLLRMKQL----RVTPDKYVYS 338 (800)
Q Consensus 277 ~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~ 338 (800)
.+++++|.+.+..+.+. +..+ +-..=+..++++...|++.++..+++++... .+.-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67777777777666654 2111 1122245677788889999998888887653 3346777887
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 339 ALISGYCKCGNIIKALSLHGEMTS---IGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCK 415 (800)
Q Consensus 339 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 415 (800)
.++-.+.+. +|-++.+ ..+-|+ +..++-.|.+.=+. ++.-.-..+.|.......++....-
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd--yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD--YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH--HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHh
Confidence 766655542 2222221 122222 22222222221100 0000001122333333344433322
Q ss_pred c--CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCC
Q 003725 416 L--GEVEEAVKLFNEMEGRQIVPDVAN-YTTVIDGYILRGKLVDAIGLFKKMREMGHK----PDIKAYNVLARGLAQYGS 488 (800)
Q Consensus 416 ~--g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~ 488 (800)
. .+..--+++++.....-+.|+... ...++..+.. +.+++..+-+.+....+. -=..+|..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 122233444444444445555322 2233333333 334443333333221111 124567777888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhc----CCHHHHHHHHHHHHhccCccC---HHHH---HHHHH
Q 003725 489 VRDALDCLKYMKKQGVKPNVITHNMI-------IEGLCTS----GRVKEARAFFDDDLKEKCLEN---YSAM---VDGYC 551 (800)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~----g~~~~a~~~~~~~~~~~~~~~---~~~l---~~~~~ 551 (800)
...|.+.+.-+... .|+...-.-+ .+..+.. -+...-..+++ .+...+.+. ...| ..-+-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe-~~qs~DiDrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWE-EIQSYDIDRQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHH-HHHhhcccHHHHHHHHHHHHHHHH
Confidence 88888888777654 3433322111 1222211 11122222333 333333322 1122 22344
Q ss_pred ccCC-HHHHHHHHHHHHHcCCCCChhcHHH----HHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHH
Q 003725 552 EANH-LEEAFQFFMTLSQRGFLMRSESCCK----LLTNLLI---EGYNNKAFKLLDTMLKLDAKPSKT----TYDKVIGA 619 (800)
Q Consensus 552 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~ 619 (800)
+.|. -++|+++++.+.+-... |...-+. +-..|.+ .....+-+.+-+-+.+.|++|-.+ .-|.|.++
T Consensus 391 ~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 4554 78888888887764322 2222222 2222222 223444444444455667766433 33444433
Q ss_pred --HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003725 620 --LCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTI 685 (800)
Q Consensus 620 --~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 685 (800)
+...|++.++.-+-.-+.+ +.|++.+|..++-++....++++|..+++++ +|+..++++
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 4568999988766555555 6789999999999999999999999999985 666666544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0044 Score=52.21 Aligned_cols=98 Identities=15% Similarity=0.015 Sum_probs=68.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 003725 577 SCCKLLTNLLIEGYNNKAFKLLDTMLKLDAK--PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIP--DLISYTMLI 652 (800)
Q Consensus 577 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li 652 (800)
++...+..+...|++++|.+.++.++..... .....+..+..++.+.|+++.|...++.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666777777777777777654311 113455567788888888888888888887643331 245677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 003725 653 HGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 653 ~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
.++.+.|+.++|.+.++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 8888888999999998888875
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0031 Score=54.06 Aligned_cols=94 Identities=9% Similarity=-0.105 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003725 578 CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657 (800)
Q Consensus 578 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 657 (800)
...+...+...|++++|..+|+-+.... +-+..-|-.|.-++-..|++++|...|..+...++. |+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3344445566677777777777666544 344555667777777788888888888887776655 77777777888888
Q ss_pred cCCHHHHHHHHHHHHH
Q 003725 658 LNCLREACNIFKDMKL 673 (800)
Q Consensus 658 ~g~~~~A~~~~~~m~~ 673 (800)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888877765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00024 Score=55.32 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003725 588 EGYNNKAFKLLDTMLKLDAK-PSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACN 666 (800)
Q Consensus 588 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 666 (800)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666677777776665421 2344455577788888888888888877 322222 33444455777888888888888
Q ss_pred HHHH
Q 003725 667 IFKD 670 (800)
Q Consensus 667 ~~~~ 670 (800)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0055 Score=51.57 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=6.0
Q ss_pred HhcCChHHHHHHHHHH
Q 003725 310 CQNSRLVEAESVLLRM 325 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m 325 (800)
.+.|++++|.+.|+.+
T Consensus 13 ~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 13 LKAGDYADAIQAFQAF 28 (119)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.04 Score=54.64 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=9.2
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 003725 412 ALCKLGEVEEAVKLFNEMEG 431 (800)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~ 431 (800)
++...||+..|.+.+++...
T Consensus 205 ~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 205 CHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 33344555555555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0038 Score=60.99 Aligned_cols=282 Identities=17% Similarity=0.166 Sum_probs=153.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--HhC--C-CCCCHHHHHHHHH
Q 003725 376 KCLCQMGKTSEAIKKFKEFKSMGIFLDQ----VCYNVIMDALCKLGEVEEAVKLFNEM--EGR--Q-IVPDVANYTTVID 446 (800)
Q Consensus 376 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~--~~~--~-~~~~~~~~~~li~ 446 (800)
.-+|+.|+....+.+|+...+.|.. |. .+|..|.++|.-.+++++|+++...= ..+ | -.-...+-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888888888888887754 33 34666667777777888888765431 111 0 0112233344455
Q ss_pred HHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 447 GYILRGKLVDAIGLFKKM----REMGHK-PDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTS 521 (800)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~----~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (800)
.+--.|.+++|+..-.+- .+.|-+ ....++..+...|-..|+.-... .-.+.|-.+..+ .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev-----------~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEV-----------T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHH-----------H
Confidence 555566666665432221 222211 12233444444444333210000 000001011100 0
Q ss_pred CCHHHHHHHHHHHHhc--c------CccCHHHHHHHHHccCCHHHHHHHHHHHHH----cCC-CCChhcHHHHHHHHHhc
Q 003725 522 GRVKEARAFFDDDLKE--K------CLENYSAMVDGYCEANHLEEAFQFFMTLSQ----RGF-LMRSESCCKLLTNLLIE 588 (800)
Q Consensus 522 g~~~~a~~~~~~~~~~--~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~ 588 (800)
..++.|.++|.+.+.- + .-..|..|...|.-.|+++.|+..-+.-+. -|- ..-...+..+..+++-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 1133444454432221 0 112255566666666777777665433221 111 11223566777888888
Q ss_pred CCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhc
Q 003725 589 GYNNKAFKLLDTMLKLDAK-----PSKTTYDKVIGALCLAGKIKWAHQVFDFLTR-----HGLIPDLISYTMLIHGFCKL 658 (800)
Q Consensus 589 g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~li~~~~~~ 658 (800)
|+++.|.+.|+......++ ....+.-+|...|.-..++++|+.++.+-+. .+..-....+.+|.++|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 8888888888876543221 2233455778888888889999988875442 11222456788899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 003725 659 NCLREACNIFKDMKL 673 (800)
Q Consensus 659 g~~~~A~~~~~~m~~ 673 (800)
|..++|+.+.+.-++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999887766553
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=49.58 Aligned_cols=88 Identities=14% Similarity=0.233 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCC
Q 003725 648 YTMLIHGFCKLNCLREACNIFKDMKLRGI-KPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEI 726 (800)
Q Consensus 648 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 726 (800)
-...|.-+...|++.....+|+.++.+|+ -|...+|+.++.+..+-... .....++.-+.+..++.|...++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD-------~~~ie~kl~~LLtvYqDiL~~~l 100 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELD-------SEDIENKLTNLLTVYQDILSNKL 100 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcccc-------chhHHHHHHHHHHHHHHHHHhcc
Confidence 34455566667999999999999999999 89999999999888872211 11234567788889999988777
Q ss_pred CchhhhccCCCCCcchHHHHHHHHHh
Q 003725 727 SPDVMLGQGLEPDTVCYTVLIARLCY 752 (800)
Q Consensus 727 ~p~~~~~~~~~~~~~~~~~l~~~~~~ 752 (800)
+| +..+|+.++..+.+
T Consensus 101 KP----------~~etYnivl~~Llk 116 (120)
T PF08579_consen 101 KP----------NDETYNIVLGSLLK 116 (120)
T ss_pred CC----------cHHHHHHHHHHHHH
Confidence 77 99999999998865
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.18 Score=49.57 Aligned_cols=127 Identities=12% Similarity=0.101 Sum_probs=79.9
Q ss_pred HHHHHHHHH--HcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCcChhc--HHHH
Q 003725 197 CNFFMNQLL--KCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC--KLARFEEAFDVLNEMNKAGVTLHGHN--YSTI 270 (800)
Q Consensus 197 ~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l 270 (800)
|..|-.++. -.|+-..|.+.-.+..+. +..|......++.+-. -.|++++|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 356777777766655422 2345555555554433 468899999999988752 22211 2222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQL 328 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (800)
.-..-+.|+.+.|.++-+...+.- +.-...+.+++...|..|+++.|+++++.-...
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 223346788888888887777653 334567788888888899999998888876643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0062 Score=52.26 Aligned_cols=91 Identities=12% Similarity=-0.022 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 340 LISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEV 419 (800)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 419 (800)
+...+...|++++|..+|+.+...++.....|..+..++-..|++++|+..|.......+. |+..+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence 3444455566666666666655554444455555555555555555555555555555442 444555555556666666
Q ss_pred HHHHHHHHHHHh
Q 003725 420 EEAVKLFNEMEG 431 (800)
Q Consensus 420 ~~A~~~~~~~~~ 431 (800)
+.|.+.|+....
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0035 Score=50.11 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=6.4
Q ss_pred HHHHhcCCHHHHHHHHH
Q 003725 446 DGYILRGKLVDAIGLFK 462 (800)
Q Consensus 446 ~~~~~~g~~~~A~~~~~ 462 (800)
..+...|++++|...+.
T Consensus 76 ~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 76 LAYYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 33333333333333333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0031 Score=59.48 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=61.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003725 550 YCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWA 629 (800)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 629 (800)
..+.++|.+|+..|.+.++..+. |...|..-..+|.+.|.++.|++-.+..+..+ +.-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 44566777777777777776654 66666777777777777777777777776654 23345677777777777778777
Q ss_pred HHHHHHHHHCC
Q 003725 630 HQVFDFLTRHG 640 (800)
Q Consensus 630 ~~~~~~~~~~~ 640 (800)
.+.|++.++..
T Consensus 169 ~~aykKaLeld 179 (304)
T KOG0553|consen 169 IEAYKKALELD 179 (304)
T ss_pred HHHHHhhhccC
Confidence 77777777643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0051 Score=60.61 Aligned_cols=128 Identities=11% Similarity=0.094 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003725 231 TYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE-NGRLDVGYDLLLKWSENGIPLNAFAYTAVIREF 309 (800)
Q Consensus 231 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 309 (800)
+|..+++..-+.+..+.|..+|++.++.+ ..+..+|...+..-.. .++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444555555555555555555554322 1223333333333222 34444455555555543 334445555555555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALSLHGEMTS 362 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (800)
.+.|+.+.|..+|++.... .|.. ..|...+..-.+.|+++.+..+.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 1222 2455555555555555555555544443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.067 Score=51.30 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=98.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHh
Q 003725 305 VIREFCQNSRLVEAESVLLRMKQLRVTPDKYV---YSALISGYCKCGNIIKALSLHGEMTSIGIKTN-YVVSVILKCLCQ 380 (800)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 380 (800)
....+...|++++|.+.|+.+...-..+ ... .-.++.++.+.+++++|...+++..+..+..+ ..+.....+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444455677777777777766542211 111 12345666677777777777777776655443 333333332221
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003725 381 --MG---------------K---TSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVAN 440 (800)
Q Consensus 381 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 440 (800)
.+ + ..+|...|+++ +.-|=...-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l---------------i~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL---------------VRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHH---------------HHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 12233333333 33333333345555544444332 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 441 YTTVIDGYILRGKLVDAIGLFKKMREM--GHKPDIKAYNVLARGLAQYGSVRDALDCLKYMK 500 (800)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 500 (800)
--.+...|.+.|.+..|..-++.+++. +.+........++.++...|..++|......+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 224566788899999999999999875 222345567788889999999999888776554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00051 Score=53.49 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=8.6
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 003725 340 LISGYCKCGNIIKALSLHGE 359 (800)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~ 359 (800)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.017 Score=55.07 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHH
Q 003725 557 EEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAG---KIKWAHQVF 633 (800)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 633 (800)
+....-++.-+..++. |...|..|...|...|+.+.|...|.+..+.. .+++..+..+..++..+. ...++..+|
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3344444555555555 77888889999999999999999999888765 466777777777665443 357889999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 634 DFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCD 688 (800)
Q Consensus 634 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 688 (800)
++++..++. |+.....|...+...|++.+|...|+.|++. -|....+..++.
T Consensus 217 ~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 217 RQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 999988776 8888888999999999999999999999986 344445555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.008 Score=61.61 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=65.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 003725 515 IEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNN 592 (800)
Q Consensus 515 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 592 (800)
...+...|++++|.+.|++.+... +...|..+..+|.+.|++++|+..+++++..++. +...+..+..++...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 445667788888888888665533 3344777777788888888888888888776654 5566777777888888888
Q ss_pred HHHHHHHHHHhCC
Q 003725 593 KAFKLLDTMLKLD 605 (800)
Q Consensus 593 ~A~~~~~~~~~~~ 605 (800)
+|+..+++.++..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887754
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.018 Score=52.27 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 405 CYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKL 454 (800)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 454 (800)
.+..+...+.+.|++++|...+++....... +...+..+...+...|+.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCh
Confidence 3444455555555555555555555443221 333444444444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=49.13 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=46.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003725 621 CLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILC 687 (800)
Q Consensus 621 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll 687 (800)
...|++++|...|+.+.+..+. +...+..++.+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4667888888888888776555 7777777888888888888888888888764 66655555444
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.022 Score=51.63 Aligned_cols=83 Identities=17% Similarity=0.112 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Q 003725 301 AYTAVIREFCQNSRLVEAESVLLRMKQLRVTPD--KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCL 378 (800)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (800)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.....+.....+..+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444455555555555555555544321111 234444555555555555555555555544332223333344444
Q ss_pred HhcCC
Q 003725 379 CQMGK 383 (800)
Q Consensus 379 ~~~g~ 383 (800)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.07 Score=55.63 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=44.3
Q ss_pred cChhcHHHHHHHHHhcCChhHHHHHHH---------HHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCC
Q 003725 262 LHGHNYSTIIQGLCENGRLDVGYDLLL---------KWSENGIPLNAFAYTAVIREFCQNSR--LVEAESVLLRMKQLRV 330 (800)
Q Consensus 262 ~~~~~~~~li~~~~~~g~~~~a~~~~~---------~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 330 (800)
+-...+.+-+..|...|.+++|.++-. .+... ..+.-.++.-=.+|.+..+ +-+...-++++++.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 344445555666777888887765421 11100 0111222333334443333 2233334555666665
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 331 TPDKYVYSALISGYCKCGNIIKALSLHGE 359 (800)
Q Consensus 331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 359 (800)
.|+.... ...++-.|++.+|.++|.+
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 5665432 3445555666666666543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0042 Score=60.71 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=46.5
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHH--HHh--CCCC-cChhcHHHHHHH
Q 003725 203 QLLKCGEVDMVLVLYEEMKSVGFSLNQF----TYDIVIKALCKLARFEEAFDVLNE--MNK--AGVT-LHGHNYSTIIQG 273 (800)
Q Consensus 203 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~--~~~--~~~~-~~~~~~~~li~~ 273 (800)
-+++.|+......+|+...+.|. -|.. +|..|..+|.-.+++++|+++... ... .|-+ -...+...|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 47888888888888888887763 2332 455566666666777777766432 111 1111 122233444455
Q ss_pred HHhcCChhHHHH
Q 003725 274 LCENGRLDVGYD 285 (800)
Q Consensus 274 ~~~~g~~~~a~~ 285 (800)
+--.|.+++|..
T Consensus 105 lKv~G~fdeA~~ 116 (639)
T KOG1130|consen 105 LKVKGAFDEALT 116 (639)
T ss_pred hhhhcccchHHH
Confidence 555566666643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0077 Score=54.44 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 300 FAYTAVIREFCQNSRLVEAESVLLRMKQLRVTP--DKYVYSALISGYCKCGNIIKALSLHGEMTSI 363 (800)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (800)
..|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555566666666665555432111 1234555555556666666666666555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.013 Score=55.77 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=89.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCCCCCCCCCcccCchhH
Q 003725 633 FDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKP-DVVLYTILCDAYSKINKRGSSSSPHTLRSNEEV 711 (800)
Q Consensus 633 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 711 (800)
++.-...++. |...|..|..+|...|++..|..-|.+..+. .| +...+..+-.++..... ....
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~------------~~~t 209 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAG------------QQMT 209 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC------------Cccc
Confidence 3333445566 8899999999999999999999999998874 44 34455555555555322 2346
Q ss_pred HHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 712 VDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIVIYKALL 782 (800)
Q Consensus 712 ~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 782 (800)
.++.++|+++...+.. |..+...|...+...|++.+|+..|+.|.+. -|....++.++
T Consensus 210 a~a~~ll~~al~~D~~-----------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 210 AKARALLRQALALDPA-----------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHHhcCCc-----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 6788899988865544 8889999999999999999999999999964 44444444444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.12 Score=45.17 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cChhcHHHH
Q 003725 192 WSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVT-LHGHNYSTI 270 (800)
Q Consensus 192 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 270 (800)
|++.-.-.|...+.+.|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+.+.. .++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3334444455555555555555555555554333445555555555555555555555555555543210 122233444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAE 319 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 319 (800)
.+.+...|.+..|...|+..... -|+...-......+.+.|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 45555555555555555555543 223333222333344444444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.063 Score=49.58 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=78.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 003725 615 KVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKIN 694 (800)
Q Consensus 615 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~ 694 (800)
.++..+.-.|.+.-....+++..+.+..-++.....|++.-.+.|+.+.|...|++..+..-+.|..+++.++.--..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a-- 259 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA-- 259 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh--
Confidence 344444455556566666666666554445666666666666666666666666655544334444444443322111
Q ss_pred CCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 695 KRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN 774 (800)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 774 (800)
....+.+++.+|...+.++...+.. |+..-|+-.-++.-.|+..+|++.++.|++ +.|.
T Consensus 260 --------~i~lg~nn~a~a~r~~~~i~~~D~~-----------~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~ 318 (366)
T KOG2796|consen 260 --------FLHLGQNNFAEAHRFFTEILRMDPR-----------NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPR 318 (366)
T ss_pred --------hheecccchHHHHHHHhhccccCCC-----------chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCc
Confidence 0112344555565555555543333 555666666666666777777777777773 4555
Q ss_pred HHHHH
Q 003725 775 IVIYK 779 (800)
Q Consensus 775 ~~~~~ 779 (800)
..+.+
T Consensus 319 ~~l~e 323 (366)
T KOG2796|consen 319 HYLHE 323 (366)
T ss_pred cchhh
Confidence 55444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.027 Score=50.87 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003725 438 VANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP--DIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMII 515 (800)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 515 (800)
...|..+...+...|++++|...|++.......+ ...++..+...+...|+.++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666667777777777777776543222 12466667777777777777777777776552 33344444444
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 003725 516 EGLC-------TSGRVKEARAFFD 532 (800)
Q Consensus 516 ~~~~-------~~g~~~~a~~~~~ 532 (800)
..+. +.|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4444 4445554444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0021 Score=47.00 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=46.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003725 616 VIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPD 679 (800)
Q Consensus 616 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 679 (800)
+...+...|++++|...|+.+++..+. +...+..+..++...|++++|...|+++++. .|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL--DPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence 455677888888888888888876655 7777888888888888888888888888763 555
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.32 Score=47.93 Aligned_cols=311 Identities=16% Similarity=0.116 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHH
Q 003725 419 VEEAVKLFNEMEGRQIVPDVANYTTVIDGYIL--RGKLVDAIGLFKKMREMGHKPDIKAYNVLARGL--AQYGSVRDALD 494 (800)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~ 494 (800)
...+.+.|..-+. ..-|..|-.++.. .|+-..|.++-.+..+. +..|...+-.++.+- .-.|+++.|.+
T Consensus 69 P~t~~Ryfr~rKR------drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKR------DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHh------hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 3445555555442 2346666666554 57778888777665432 344666666666544 45799999999
Q ss_pred HHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 003725 495 CLKYMKKQGVKPNVIT--HNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRG 570 (800)
Q Consensus 495 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (800)
-|+.|.+. |.... +..|.-.-.+.|..+.|..+-++..... -...+...+...+..|+++.|+++.+.-....
T Consensus 142 kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 142 KFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 99999853 22221 2233333456799999988888544433 23347888999999999999999998877654
Q ss_pred CC-CChh--cHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 003725 571 FL-MRSE--SCCKLLTNL---LIEGYNNKAFKLLDTMLKLDAKPSKTTY-DKVIGALCLAGKIKWAHQVFDFLTRHGLIP 643 (800)
Q Consensus 571 ~~-~~~~--~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 643 (800)
+. ++.. .-..++.+- .-..+...|...-.+..+. .||...- ..-..++.+.|++.++-.+++.+-+..+.|
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 32 2211 111222211 1223455666666665554 4553322 233567888888888888888888876655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH-HHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHH
Q 003725 644 DLISYTMLIHGFCKLNCLREACNIFKDMKLR-GIKPDVV-LYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEM 721 (800)
Q Consensus 644 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 721 (800)
++. .+..+.+.|+.. +.-+++.... .++||.. +...+..+-.. .+++..|..--+..
T Consensus 297 ~ia----~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAld---------------a~e~~~ARa~Aeaa 355 (531)
T COG3898 297 DIA----LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALD---------------AGEFSAARAKAEAA 355 (531)
T ss_pred HHH----HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHh---------------ccchHHHHHHHHHH
Confidence 542 222345556533 3333332210 1456543 33333333333 23455555544433
Q ss_pred HHCCCCchhhhccCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC
Q 003725 722 KEMEISPDVMLGQGLEPDTVCYTVLIARLCYT-NNLVDALIVFDEMIDRGLEPN 774 (800)
Q Consensus 722 ~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~ 774 (800)
.. .. |....|..|.+.-... |+-.++...+-+.++....|+
T Consensus 356 ~r--~~----------pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 356 AR--EA----------PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hh--hC----------chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 32 23 3777888888777555 888888888888776544554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.071 Score=55.59 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=16.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 003725 653 HGFCKLNCLREACNIFKDMKLR 674 (800)
Q Consensus 653 ~~~~~~g~~~~A~~~~~~m~~~ 674 (800)
.+|.++|+..||..+++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 4567788888888888887654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.055 Score=50.53 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 342 SGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSM 397 (800)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 397 (800)
..+...|++++|...|+.+....+... .+...++.++.+.|+++.|...++++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455556666666655555433322 44445555555555555555555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0019 Score=47.93 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 003725 609 SKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN-CLREACNIFKDMKL 673 (800)
Q Consensus 609 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 673 (800)
+..+|..+...+...|++++|...|++.++.++. +...|..+..+|.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3556777788888888888888888888886655 6778888888888888 68888888888775
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.008 Score=59.25 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=37.9
Q ss_pred ChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 003725 244 RFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLN---AFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 320 (800)
+.+.|.++|+...+. +..+...|...+.-+...|+.+.|..+|++.... ++++ ...|...++.=.+.|+++.+.+
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333344444444433 2223344444444444444555555555544443 1211 2355556666566666666666
Q ss_pred HHHHHHh
Q 003725 321 VLLRMKQ 327 (800)
Q Consensus 321 ~~~~m~~ 327 (800)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.21 Score=43.71 Aligned_cols=133 Identities=13% Similarity=0.015 Sum_probs=95.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHH
Q 003725 226 SLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGI-PLNAFAYTA 304 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 304 (800)
.|++..-..|..++.+.|++.+|...|++....-+--|....-.+.++....+++..|...++.+.+... .-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4777777778888899999999999998887655556777778888888888899999888888877531 012334556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 305 VIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEM 360 (800)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 360 (800)
+.+.+...|++.+|+.-|+..... -|+...-......+.++|+..++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677888888888888888888875 455554444455666777666665544443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.049 Score=45.11 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=23.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 308 EFCQNSRLVEAESVLLRMKQLRVTPD--KYVYSALISGYCKCGNIIKALSLHGEMTS 362 (800)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (800)
++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443322 12233334444444444444444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.48 Score=47.36 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003725 197 CNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAG 259 (800)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 259 (800)
|..+...-...|+.+.|..+++. +|+..- =+..+.+.|+.+.| +.+..+.|
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg 53 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG 53 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC
Confidence 45566666677777777666542 444432 23444555665555 34444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.044 Score=45.41 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=55.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 003725 581 LLTNLLIEGYNNKAFKLLDTMLKLDAKPS--KTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIP--DLISYTMLIHGFC 656 (800)
Q Consensus 581 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~ 656 (800)
...++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+++......+.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566666677777776666654433 2345566677777888888888887777532220 1112222334566
Q ss_pred hcCCHHHHHHHHHHHH
Q 003725 657 KLNCLREACNIFKDMK 672 (800)
Q Consensus 657 ~~g~~~~A~~~~~~m~ 672 (800)
..|+.++|++.+-..+
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7788888887776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.076 Score=57.08 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC--------CHHHHHHHHHHHHH
Q 003725 330 VTPDKYVYSALISGYCK--CG---NIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG--------KTSEAIKKFKEFKS 396 (800)
Q Consensus 330 ~~p~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~ 396 (800)
.+.+...|...+++... .+ +.+.|..+|++..+..+....++..+..++.... +...+.+...+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 34566777777666432 22 3667777777777766555444444333332211 11222222222222
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 397 M-GIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 397 ~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
. ....+...|.++...+...|++++|...+++....+ |+...|..+...+...|+.++|...+.+....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1 112233455555444455566666666666666553 35556666666666666666666666666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.35 Score=44.91 Aligned_cols=144 Identities=12% Similarity=-0.031 Sum_probs=111.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HH
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDK-----VI 617 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~ 617 (800)
.+.++..+.-.|++.-....+.++++.+...++...+.+++.-.+.||.+.|...++...+..-..+..+++. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3556667777788888899999999988787888899999999999999999999998776543444444433 33
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003725 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDA 689 (800)
Q Consensus 618 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~ 689 (800)
..|.-++++..|...+.++...+.. |+...|.-.-+..-.|+..+|++.++.|+. +.|...+-++++-.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFN 328 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHH
Confidence 4566788999999999999887666 777777766667778999999999999997 47777666654433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.15 Score=47.62 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHH
Q 003725 340 LISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSE 386 (800)
Q Consensus 340 li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 386 (800)
+...|.+.|.+..|..-++.+++.-+... .+...++.++.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 45667778888888887777777655443 455666666666666553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.024 Score=51.21 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 003725 608 PSKTTYDKVIGALCL-----AGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKL----------------NCLREACN 666 (800)
Q Consensus 608 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~ 666 (800)
.+..+|..++..|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455566666666654 356666667777777777777888888887766432 24566899
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 667 IFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 667 ~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
++++|...|+-||..|+..+++.+++
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 99999999999999999999999987
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.023 Score=51.35 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=79.0
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHH
Q 003725 214 LVLYEEMKSVGFSLNQFTYDIVIKALCK-----LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLL 288 (800)
Q Consensus 214 ~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 288 (800)
...|+..... ..|..+|..++..|.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------- 103 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------- 103 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------
Confidence 4445544221 3577777777777764 35556666667777777777777777777776654 2221
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 003725 289 KWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNI-IKALSLHGEMT 361 (800)
Q Consensus 289 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 361 (800)
|.. .+.++..- .-.+-+-|++++++|...|+-||..++..+++.+.+.+.. .+..++.-.|.
T Consensus 104 --------p~n-~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 104 --------PRN-FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred --------ccc-HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 11111111 1223467889999999999999999999999998776653 33444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.069 Score=57.37 Aligned_cols=140 Identities=14% Similarity=-0.002 Sum_probs=81.2
Q ss_pred CCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCcC-hhcHHHHHHHHHhcC--------ChhHHHHHHHHH
Q 003725 225 FSLNQFTYDIVIKALCKL-----ARFEEAFDVLNEMNKAGVTLH-GHNYSTIIQGLCENG--------RLDVGYDLLLKW 290 (800)
Q Consensus 225 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g--------~~~~a~~~~~~~ 290 (800)
.+.|...|...+++.... +....|..+|++..+.. |+ ...|..+..++.... ++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345667777777665432 22567778888877754 33 344444444333221 122233333332
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch
Q 003725 291 SEN-GIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN 368 (800)
Q Consensus 291 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 368 (800)
... ..+.+..+|.++.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....++..+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 222 123345566666555666677777777777777654 5666777777777777777777777777766555433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.78 E-value=1.2 Score=48.85 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=86.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 003725 161 VSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC 240 (800)
Q Consensus 161 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 240 (800)
........+.+.|++++|...|-+.+..- .|+ .++.-|....++..-..+++.+.+.|+ .+...-..|+.+|.
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYi 442 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHH
Confidence 44455556667788888888876655432 222 235555666666666777777777775 35556667788888
Q ss_pred hcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 241 KLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 320 (800)
+.++.+.-.++.+.-. .|.. ..-....+..+.+.+-+++|..+-..... +......++ -..+++++|.+
T Consensus 443 Klkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~ 511 (933)
T KOG2114|consen 443 KLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALR 511 (933)
T ss_pred HhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHH
Confidence 8888777666655433 2211 11234455556666666666555444333 223333333 34567788877
Q ss_pred HHHHHH
Q 003725 321 VLLRMK 326 (800)
Q Consensus 321 ~~~~m~ 326 (800)
.+..+.
T Consensus 512 yi~slp 517 (933)
T KOG2114|consen 512 YISSLP 517 (933)
T ss_pred HHhcCC
Confidence 776653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.71 E-value=1.5 Score=49.08 Aligned_cols=197 Identities=12% Similarity=0.037 Sum_probs=96.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHHH--HHHHHhcCChHHHHHHHH--------HHHHCCCCCCHHHH
Q 003725 585 LLIEGYNNKAFKLLDTMLKLDA-KPS-----KTTYDKV--IGALCLAGKIKWAHQVFD--------FLTRHGLIPDLISY 648 (800)
Q Consensus 585 ~~~~g~~~~A~~~~~~~~~~~~-~~~-----~~~~~~l--~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~ 648 (800)
.+..+++..|...++.+.+..- .|+ ...+... +-.+...|+++.|...|. .....+...+...+
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 4456888888888888876421 111 1122222 223446799999999997 44455555454444
Q ss_pred HHH--HHHHHhcCC--HHH--HHHHHHHHHH---cCCCCCHHHHHHHH-HHHhccCCCCCCCCCCcccCchhHHHHHHHH
Q 003725 649 TML--IHGFCKLNC--LRE--ACNIFKDMKL---RGIKPDVVLYTILC-DAYSKINKRGSSSSPHTLRSNEEVVDASDFL 718 (800)
Q Consensus 649 ~~l--i~~~~~~g~--~~~--A~~~~~~m~~---~g~~pd~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 718 (800)
..+ +..+...+. ..+ +.++++++.. .....+..++..++ .++..... ......+..+.++.+..
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~ne~k~~l~~~L~~~ 524 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEP------FSSNEAKRHLQEALKMA 524 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCc------cccHHHHHHHHHHHHHH
Confidence 332 222222232 222 6666665543 11122334444443 33322110 00012233333344333
Q ss_pred HHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHc-----cccCCCC
Q 003725 719 EEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEP---NIVIYKALLC-----GCPTKKD 790 (800)
Q Consensus 719 ~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~-----~~~~~g~ 790 (800)
....+..- --..+++.|...+. .|+..|..+..........+. ....|..+.. .+...|+
T Consensus 525 --~~~~~n~~---------l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~ 592 (608)
T PF10345_consen 525 --NNKLGNSQ---------LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGD 592 (608)
T ss_pred --HHhhccch---------HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCc
Confidence 01111110 02234555555555 788888777766644322222 4456643333 4667799
Q ss_pred HHHHHhhhc
Q 003725 791 VDKYLSLFA 799 (800)
Q Consensus 791 ~~~A~~~~~ 799 (800)
.++|.+..+
T Consensus 593 ~~ka~~~~~ 601 (608)
T PF10345_consen 593 RDKAEEARQ 601 (608)
T ss_pred HHHHHHHHH
Confidence 999987654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=44.13 Aligned_cols=63 Identities=13% Similarity=-0.069 Sum_probs=48.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003725 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLY 683 (800)
Q Consensus 618 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 683 (800)
..|.+.+++++|.++++.+...++. +...|.....++.+.|++++|.+.|++.++. .|+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHH
Confidence 4677888888888888888877665 7777778888888888888888888888864 5655443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.56 E-value=1 Score=45.43 Aligned_cols=141 Identities=17% Similarity=0.161 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 003725 610 KTTYDKVIGALCLAGKIKWAHQVFDFLTRHG-LIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYT-ILC 687 (800)
Q Consensus 610 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~-~ll 687 (800)
..+|...+..-.+...++.|+.+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+--+.. -||...|. -.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777777788888999998888777 6677888888887554 57888888888775543 56655443 233
Q ss_pred HHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 688 DAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
.-+..+ ++-..|..+|+.....=... .-...|..+|..-.+.|+...|..+=++|.
T Consensus 474 ~fLi~i---------------nde~naraLFetsv~r~~~~---------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRI---------------NDEENARALFETSVERLEKT---------QLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHh---------------CcHHHHHHHHHHhHHHHHHh---------hhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 333332 23456777777544210000 024578888888888888888888877776
Q ss_pred HCCCCCCHHHHH
Q 003725 768 DRGLEPNIVIYK 779 (800)
Q Consensus 768 ~~g~~p~~~~~~ 779 (800)
+ +-|...+..
T Consensus 530 e--~~pQen~~e 539 (660)
T COG5107 530 E--LVPQENLIE 539 (660)
T ss_pred H--HcCcHhHHH
Confidence 4 345544333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0088 Score=44.16 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 416 LGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
.|++++|+++|+.+....+. +...+..+..+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444433222 333344444444444444444444444443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.012 Score=43.59 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 003725 336 VYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMG-KTSEAIKKFKEF 394 (800)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~ 394 (800)
.|..+...+...|++++|+..|++..+.++....++..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444433322234444444444444 344444444333
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.014 Score=42.57 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=18.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003725 344 YCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKE 393 (800)
Q Consensus 344 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 393 (800)
+...|++++|...|+++.+..+....++..+..++...|++++|...|++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444444444444333322223333333333333333333333333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.92 Score=42.59 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=28.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNV---ITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.+-|.+.|.+..|..-++.|++. .+-+. ..+..+..+|...|-.++|.+.-.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 44556666666666666666655 22222 233344455666666666655544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.2 Score=45.00 Aligned_cols=183 Identities=14% Similarity=0.032 Sum_probs=95.0
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHH
Q 003725 575 SESCCKLLTNLLIEGYNNKAFKLLDTMLKLD---AKPSKTTYDKVIGALCL---AGKIKWAHQVFDFLTRHGLIPDLISY 648 (800)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~ 648 (800)
..+...++-+|-...+++..+++++.+.... +.....+-...+-++.+ .|+.++|.+++..+....-.+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344445555555566666666666655431 11111111223334445 66667777766665544445566666
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHH
Q 003725 649 TMLIHGFCK---------LNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLE 719 (800)
Q Consensus 649 ~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 719 (800)
..++..|-. ....++|+..|.+.-+ +.||..+-..+..-....|... .......+....+.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~--------~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDF--------ETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcc--------cchHHHHHHHHHHH
Confidence 666665531 1237788888887765 3466544333222222222110 11112222222222
Q ss_pred HHH-HCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003725 720 EMK-EMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIV 776 (800)
Q Consensus 720 ~~~-~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 776 (800)
.+. +.|... -..+-.-+.++..+..-.|++++|.+..++|.+. .|+..
T Consensus 291 ~llg~kg~~~-------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 291 SLLGRKGSLE-------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred HHHHhhcccc-------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 222 222221 1225556678899999999999999999999854 45544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.24 Score=42.98 Aligned_cols=92 Identities=9% Similarity=-0.078 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003725 580 KLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN 659 (800)
Q Consensus 580 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 659 (800)
.....+...|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...|......+.. |+..+-.+..+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 33445667899999999998887665 345666788888888999999999999888765543 6666777888999999
Q ss_pred CHHHHHHHHHHHHH
Q 003725 660 CLREACNIFKDMKL 673 (800)
Q Consensus 660 ~~~~A~~~~~~m~~ 673 (800)
+.++|+..|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999886
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.1 Score=50.52 Aligned_cols=93 Identities=9% Similarity=-0.062 Sum_probs=62.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCH
Q 003725 586 LIEGYNNKAFKLLDTMLKLDAKPS--KTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLI--PDLISYTMLIHGFCKLNCL 661 (800)
Q Consensus 586 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~ 661 (800)
...|++++|+..|+.+++...... ...+-.+...|...|++++|...|+.+.+..+. .....+-.++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 345666677766766666532111 235567778888888888888888888863222 1344555567777888899
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 003725 662 REACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 662 ~~A~~~~~~m~~~g~~pd~ 680 (800)
++|.++|+++++. .|+.
T Consensus 234 ~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHHHHHHHH--CcCC
Confidence 9999999888875 5553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.072 Score=51.53 Aligned_cols=51 Identities=16% Similarity=0.006 Sum_probs=22.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPDK----YVYSALISGYCKCGNIIKALSLHGEMTS 362 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (800)
.+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+.+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445555555555444431 221 2333444444445555555555544443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.019 Score=43.77 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 611 TTYDKVIGALCLAGKIKWAHQVFDFLTR----HGLI-PD-LISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 611 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.+++.+...|...|++++|...|++..+ .|.. |+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4567778888888888888888887774 2211 22 55678888888899999999988888764
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=3.3 Score=45.57 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=69.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 274 LCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKA 353 (800)
Q Consensus 274 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 353 (800)
+.+.|++++|...+-+-+.. +.| ..+|.-|....++.+-..+++.+.+.|.. +...-..|+.+|.+.++.++-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 34556666665555444332 111 12344444444555555566666666543 333444566666666666665
Q ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 354 LSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEM 429 (800)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (800)
.+..+... .|.. -.-+...+..+.+.+-.++|..+-.+... ....... .+-..+++++|++.+..+
T Consensus 451 ~efI~~~~-~g~~-~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW-FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce-eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 55544332 1111 01234455556666666666655444332 1222222 233456777777777665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.55 Score=38.64 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGI 676 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 676 (800)
.....++.+...|.-+.-.++...+.+ +-.+++...-.+..+|.+.|+..+|.++++++-++|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555666667777766666666654 2345666666777777777777777777777777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.31 Score=42.34 Aligned_cols=90 Identities=14% Similarity=0.015 Sum_probs=66.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhh
Q 003725 652 IHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVM 731 (800)
Q Consensus 652 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 731 (800)
..-+...|++++|..+|+-+.. ..|...-|..=+.+|.. ..+.+++|...|.........
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q--------------~~k~y~~Ai~~Y~~A~~l~~~---- 103 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQ--------------LKKQFQKACDLYAVAFTLLKN---- 103 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcccC----
Confidence 3345678888888888888775 34544555555555555 367788888888766654433
Q ss_pred hccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 732 LGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 732 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
|+..+-..+.||...|+.++|...|+...+
T Consensus 104 -------dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 104 -------DYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -------CCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 777778899999999999999999999986
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.90 E-value=3.3 Score=44.89 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCH
Q 003725 477 NVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHL 556 (800)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (800)
+--+.-+...|+..+|.++-.+.+ -||...|-.-+.++...+++++-+++-+ ..+.|..|...+.++.+.|+.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk---skksPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK---SKKSPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh---ccCCCCCchhHHHHHHhcccH
Confidence 333444555566666666555543 4555555555566666666665544433 122244455555555555555
Q ss_pred HHHHHHHH
Q 003725 557 EEAFQFFM 564 (800)
Q Consensus 557 ~~A~~~~~ 564 (800)
++|.+.+.
T Consensus 761 ~EA~KYip 768 (829)
T KOG2280|consen 761 DEAKKYIP 768 (829)
T ss_pred HHHhhhhh
Confidence 55555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.86 E-value=2 Score=43.56 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 472 DIKAYNVLARGLAQYGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (800)
+-..+.+++.+..-.|+.+.|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555566666666666666666666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.42 Score=41.85 Aligned_cols=69 Identities=22% Similarity=0.443 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 003725 406 YNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMR-----EMGHKPDIKA 475 (800)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 475 (800)
...++..+...|++++|..+.+.+....+- |...|..+|.+|...|+...|.+.|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455555566666666666666555433 55566666666666666666666665552 2355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.6 Score=40.36 Aligned_cols=84 Identities=13% Similarity=-0.010 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003725 439 ANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGL 518 (800)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (800)
..|..-..+|....++++|...+.+..+. .. +...+-. ....++.|.-+.+++.+. +--...+.-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yE-nnrslfh------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YE-NNRSLFH------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HH-hcccHHH------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 44555556677777777777766665431 01 1111111 122334455555554432 11223344445566
Q ss_pred HhcCCHHHHHHHHH
Q 003725 519 CTSGRVKEARAFFD 532 (800)
Q Consensus 519 ~~~g~~~~a~~~~~ 532 (800)
..+|..+.|-..++
T Consensus 102 ~E~GspdtAAmale 115 (308)
T KOG1585|consen 102 VECGSPDTAAMALE 115 (308)
T ss_pred HHhCCcchHHHHHH
Confidence 66666666655555
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.071 Score=46.79 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMK-----LRGIKPDVVLY 683 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~pd~~~~ 683 (800)
....++..+...|+++.|....+.+....+- |...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455677788899999999999999887665 88889999999999999999999888875 35888886653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.1 Score=39.07 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHG 640 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 640 (800)
.+...+++++|.+.++.++..+ +.+...+.....++...|++++|...++...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3445555555555555555543 3344445555556666666666666666666543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.4 Score=50.37 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=47.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 413 LCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDA 492 (800)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 492 (800)
..+.|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+..+ |..|+-.+.-.|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 34455555555543332 2445566666666666666666655554432 33344445555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 493 LDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFD 532 (800)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 532 (800)
.++.+....+| -++....++.-.|++++..+++.
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555444 12333344444455555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.1 Score=39.65 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHc
Q 003725 106 VHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQT 185 (800)
Q Consensus 106 ~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 185 (800)
...|....-++-...++++|..-+.+..+-... ... .+-..+.++.|.-+.+++
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrs-------------------------lfhAAKayEqaamLake~ 84 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRS-------------------------LFHAAKAYEQAAMLAKEL 84 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-ccc-------------------------HHHHHHHHHHHHHHHHHH
Confidence 456666666676677777777766665533110 000 011112233333333333
Q ss_pred cCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---C--C
Q 003725 186 DRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKA---G--V 260 (800)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~--~ 260 (800)
.+.. .-+..|+.....|..+|..+.|-.-++..-+ ..++.+.++|+++|++...- + -
T Consensus 85 ~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~ 146 (308)
T KOG1585|consen 85 SKLS--EVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRD 146 (308)
T ss_pred HHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchH
Confidence 3221 1123345555666777766666555554422 11233444444444433221 0 0
Q ss_pred CcChhcHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCC
Q 003725 261 TLHGHNYSTIIQGLCENGRLDVGYDLLLKWSE----NGIPLN-AFAYTAVIREFCQNSRLVEAESVLLRMKQL---RVTP 332 (800)
Q Consensus 261 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p 332 (800)
.--...+..+.+++.+...+++|-..+.+-.. ..--++ -..|.+.|-.+....++..|++.++.--+. .-.-
T Consensus 147 ~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se 226 (308)
T KOG1585|consen 147 QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE 226 (308)
T ss_pred HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence 00112233344455555566655444332221 110111 123444455555566777777777764332 1223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 333 DKYVYSALISGYCKCGNIIKALSLH 357 (800)
Q Consensus 333 ~~~~~~~li~~~~~~g~~~~A~~~~ 357 (800)
|..+...|+.+| ..||.+++..++
T Consensus 227 d~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 227 DSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 455566666655 446666655554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.7 Score=39.62 Aligned_cols=178 Identities=18% Similarity=0.122 Sum_probs=92.3
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-hHHHHHHHHHHHhc----
Q 003725 309 FCQNSRLVEAESVLLRMKQLR--VTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKT-NYVVSVILKCLCQM---- 381 (800)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---- 381 (800)
-.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.++++.|+...++.....+.. +..+...+.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 345677777777777776542 11234455556666777777777777777776654443 34454444444421
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 382 ---GKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAI 458 (800)
Q Consensus 382 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 458 (800)
.+...+...+..+.+ ++.-|=...=...|..-+..+... =...=..+.+.|.+.|.+..|.
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHHH
Confidence 222222222222211 111111111112222222222110 0000123456788888888888
Q ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 459 GLFKKMREMGH--KPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQ 502 (800)
Q Consensus 459 ~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 502 (800)
.-+++|++.-. .-....+-.+..+|...|-.++|...-.-+...
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888887611 112345666777888888888887766655543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.27 E-value=3.7 Score=41.18 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=38.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHH
Q 003725 480 ARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEA 559 (800)
Q Consensus 480 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (800)
+.-+...|+...|.++-.+.. -|+..-|..-+.+++..+++++-.++.. ..++|..|..++.++.+.|+..+|
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~---skKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAK---SKKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHh---CCCCCCChHHHHHHHHHCCCHHHH
Confidence 344445555555555444332 3455555555555555555555554332 133444455555555555555555
Q ss_pred HHHHH
Q 003725 560 FQFFM 564 (800)
Q Consensus 560 ~~~~~ 564 (800)
..+..
T Consensus 257 ~~yI~ 261 (319)
T PF04840_consen 257 SKYIP 261 (319)
T ss_pred HHHHH
Confidence 54443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.8 Score=40.24 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=61.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003725 240 CKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAE 319 (800)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 319 (800)
...|++.+|..+|+....... -+...-..++.+|...|+.+.|..++..+....-.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 344555555555555544321 1233444455555555555555555554443311111111112223333333333333
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHhcC
Q 003725 320 SVLLRMKQLRVTP-DKYVYSALISGYCKCGNIIKALSLHGEMTSIGI--KTNYVVSVILKCLCQMG 382 (800)
Q Consensus 320 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 382 (800)
.+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+...+. ..+.+-..++..+.-.|
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333332 23 455555566666666666666666555544322 22244444444444444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.35 Score=48.27 Aligned_cols=98 Identities=8% Similarity=-0.077 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003725 610 KTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDA 689 (800)
Q Consensus 610 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~ 689 (800)
..+++.+.-+|.+.+++..|.+.-+..+..+.. |+-...--..+|...|+++.|+..|+++++ +.|+......=+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 345677888899999999999999998887655 777777778889999999999999999997 58888888777777
Q ss_pred HhccCCCCCCCCCCcccCchhHHHHHHHHHHHHH
Q 003725 690 YSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKE 723 (800)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 723 (800)
|.. ..+.......++|..|..
T Consensus 334 l~~-------------k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQ-------------KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHhh
Confidence 765 223444555777777764
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.06 E-value=7.5 Score=43.57 Aligned_cols=192 Identities=11% Similarity=0.107 Sum_probs=117.9
Q ss_pred ChhHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHH-hCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHH
Q 003725 86 DPGAALTFFELLK-ARGFRH--NVHTYAAIVRILC-YCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRV 161 (800)
Q Consensus 86 ~~~~A~~~f~~~~-~~~~~~--~~~~~~~~~~~l~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (800)
-...|++.++.+. +..++| +..++..+..+|. ...+.+.|+..+++.+......++.-+. ...
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k-------------~~~ 102 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK-------------FRC 102 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH-------------HHH
Confidence 3456888888887 444444 3577888899887 5889999999999886664332222111 123
Q ss_pred HHHHHHHHHccCChHHHHHHHHHccCC----CCccCHHHHHHH-HHHHHHcCChhHHHHHHHHHHhCC---CCCCHHhHH
Q 003725 162 SDAMVKAYCSERMFDQALNVLFQTDRP----GFVWSKFTCNFF-MNQLLKCGEVDMVLVLYEEMKSVG---FSLNQFTYD 233 (800)
Q Consensus 162 ~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~ 233 (800)
...+++.+.+.+... |...+++.++. +..+-...+..+ +..+...+++..|.+.++.+.... ..|-...+-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 335577777776666 88888775542 122223334444 333334479999999998886432 234455555
Q ss_pred HHHHHHH--hcCChhHHHHHHHHHHhCCC---------CcChhcHHHHHHHHH--hcCChhHHHHHHHHHH
Q 003725 234 IVIKALC--KLARFEEAFDVLNEMNKAGV---------TLHGHNYSTIIQGLC--ENGRLDVGYDLLLKWS 291 (800)
Q Consensus 234 ~li~~~~--~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 291 (800)
.++.+.. +.+..+++.+.++.+..... .|...+|..+++.++ ..|+++.+.+.+.++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555554 45667778787777643211 234566777777665 4677777766655554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.04 E-value=6 Score=42.40 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 003725 441 YTTVIDGYILRGKLVDAIGLFKKMREMG-HKPDI-----KAYNVLARGLAQ----YGSVRDALDCLKYMKKQGVKPNVIT 510 (800)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (800)
...++....-.|+-+.+++++.+..+.+ +.-.. -.|...+..++. ..+.+.|.+++..+.++ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3344444444555556655555544321 11111 122222222222 34567777888877766 445444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHhccC------ccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHH-
Q 003725 511 HN-MIIEGLCTSGRVKEARAFFDDDLKEKC------LENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLL- 582 (800)
Q Consensus 511 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~- 582 (800)
+. .-.+.+...|++++|.+.|++.+.... .-.+-.+...+.-..++++|.+.|..+.+.+-- +...|..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 43 333556667888888888885553221 111455666677788888888888888876433 233333333
Q ss_pred HHHHhcCCH-------HHHHHHHHHHHh
Q 003725 583 TNLLIEGYN-------NKAFKLLDTMLK 603 (800)
Q Consensus 583 ~~~~~~g~~-------~~A~~~~~~~~~ 603 (800)
.++...|+. ++|.+++.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 334455666 777777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.08 Score=40.28 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccCChHHHHHHHHHc
Q 003725 106 VHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQT 185 (800)
Q Consensus 106 ~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 185 (800)
..+|+.+..++...|++++|...+++.++.....+.+. +....++..+...|...|++++|++.+++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH------------PDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999999999999999876622221111 113567888999999999999999998875
Q ss_pred c
Q 003725 186 D 186 (800)
Q Consensus 186 ~ 186 (800)
.
T Consensus 73 l 73 (78)
T PF13424_consen 73 L 73 (78)
T ss_dssp H
T ss_pred H
Confidence 4
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.4 Score=40.23 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 403 QVCYNVIMDALCKLGEVEEAVKLFNEMEGR---------------QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
..++..++.++++.|+++....+++..-.- ...|+..+..+++.+|+.+|++..|+++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 456667777777777777777777654211 12344444444444444444444444444444322
Q ss_pred -CCCCCHHHHHHHHH
Q 003725 468 -GHKPDIKAYNVLAR 481 (800)
Q Consensus 468 -~~~p~~~~~~~l~~ 481 (800)
+++.+...|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 23333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.9 Score=43.29 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=31.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 615 KVIGALCLAGKIKWAHQVFDFLTRHGLI-PDLISYTMLIHGFCKLNCLREACNIFKDM 671 (800)
Q Consensus 615 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 671 (800)
.+..++.+.|+.++|.+.+.++.+..+. ........|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444455566666666666666542211 13344556666666666666666666664
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.92 E-value=3.4 Score=39.72 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=69.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEA 422 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (800)
.....|++.+|..+|............+...+..+|...|+.+.|..++..+....-.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666666666666666555555555566666666666666666665544322111111111122333333333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 003725 423 VKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM--GHKPDIKAYNVLARGLAQYG 487 (800)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 487 (800)
..+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..|+..+.--|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 3333333221 115555556666677777777777666655443 222 3333444444444333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.19 Score=51.34 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=61.9
Q ss_pred ChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003725 574 RSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSK----TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYT 649 (800)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 649 (800)
+...+..+..+|...|++++|+..+++.++.+ |+. .+|..+..+|...|++++|...++++.+.+ . ..|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHH
Confidence 34567778888888888888888888877764 332 347778888888888888888888887741 1 1222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 003725 650 MLIH--GFCKLNCLREACNIFKDMKLRGI 676 (800)
Q Consensus 650 ~li~--~~~~~g~~~~A~~~~~~m~~~g~ 676 (800)
.+.. .+....+.++..++++.+..-|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2111 11222344466666666666653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.7 Score=46.20 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=66.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003725 577 SCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFC 656 (800)
Q Consensus 577 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 656 (800)
++..+..++.+.+++.+|++.....+..+ ++|....-.-..+|...|+++.|+..|+++++..+. |...-+-++.+--
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 55666777777777777777777777766 456665556677888888888888888888876555 5555566666555
Q ss_pred hcCCHHH-HHHHHHHHHHc
Q 003725 657 KLNCLRE-ACNIFKDMKLR 674 (800)
Q Consensus 657 ~~g~~~~-A~~~~~~m~~~ 674 (800)
+...+.+ ..++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 5554443 46778888753
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.73 E-value=11 Score=43.68 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=20.3
Q ss_pred CCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHh
Q 003725 226 SLNQFTYDIVIKALCKLA--RFEEAFDVLNEMNK 257 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 257 (800)
.|+ .-...+|..|.+.+ .+++|++.......
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 355 44456778888876 67777777666654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.81 Score=38.84 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=45.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hc
Q 003725 583 TNLLIEGYNNKAFKLLDTMLKLDA--KPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFC--KL 658 (800)
Q Consensus 583 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~--~~ 658 (800)
....+.|++++|++.|+.+...-. +-....-..++.+|.+.|++++|...+++.++..+..--..|...+.+++ +.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 334444555555555555544311 11222334455566666666666666666655433322222333333322 11
Q ss_pred ---------------CCHHHHHHHHHHHHHcCCCCC
Q 003725 659 ---------------NCLREACNIFKDMKLRGIKPD 679 (800)
Q Consensus 659 ---------------g~~~~A~~~~~~m~~~g~~pd 679 (800)
+...+|..-|+++++. -|+
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~--yP~ 131 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR--YPN 131 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH--CcC
Confidence 1255677777777764 455
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.57 Score=44.36 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=35.9
Q ss_pred hcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHH
Q 003725 311 QNSRLVEAESVLLRMKQLRV--TPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTS 385 (800)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 385 (800)
+.|++.+|...|....+... .-....+-.|...+...|+++.|..+|..+.+.-++.+ ..+..+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34445555555555554310 01112233344555555555555555555544333222 33333334444444444
Q ss_pred HHHHHHHHHH
Q 003725 386 EAIKKFKEFK 395 (800)
Q Consensus 386 ~a~~~~~~~~ 395 (800)
+|...|+++.
T Consensus 233 ~A~atl~qv~ 242 (262)
T COG1729 233 EACATLQQVI 242 (262)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.52 E-value=2.3 Score=35.15 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=22.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003725 410 MDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMG 468 (800)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 468 (800)
+......|.-|.-.+++.++.+ +-.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444444444444444444432 112344444444444444444444444444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.40 E-value=8.6 Score=41.23 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHH------HHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCH
Q 003725 160 RVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKF------TCNFFMNQLLK----CGEVDMVLVLYEEMKSVGFSLNQ 229 (800)
Q Consensus 160 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~ 229 (800)
..+..++....=.|+-+.+++.+++..+.+-...+. .|+..+..++. ....+.|.++++.+.++ -|+.
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 345566666666777777777777766543222222 23333333322 34566777777777664 3565
Q ss_pred HhHHHHH-HHHHhcCChhHHHHHHHHHHhCC---CCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003725 230 FTYDIVI-KALCKLARFEEAFDVLNEMNKAG---VTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAV 305 (800)
Q Consensus 230 ~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (800)
..|...- +.+...|++++|++.|+...... .+.....+-.+.-.+...+++++|.+.|..+.+.. .-+...|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 5554332 44445777777777777654311 11223344445555666677777777777776642 1122233322
Q ss_pred HH-HHHhcCCh-------HHHHHHHHHHH
Q 003725 306 IR-EFCQNSRL-------VEAESVLLRMK 326 (800)
Q Consensus 306 i~-~~~~~g~~-------~~A~~~~~~m~ 326 (800)
.. ++...|+. ++|.++|.++.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 22 23345555 55666665554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.081 Score=32.84 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 742 CYTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 742 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
+|+.|+..|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999965
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.6 Score=44.24 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 003725 267 YSTIIQGLCENGRLDVGYDLLLKWSENG--IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLR--VTPDKYVYSALIS 342 (800)
Q Consensus 267 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~ 342 (800)
|+.-+. +.+.|++..|.+.|...++.. -.-...++..|..++...|++++|..+|..+.+.- .+.-+..+--|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 443333 455666777777777777752 12234456667777777777777777777776541 1112356666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCch
Q 003725 343 GYCKCGNIIKALSLHGEMTSIGIKTN 368 (800)
Q Consensus 343 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 368 (800)
...+.|+.++|..+|+++.+.-+..+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 77777777777777777777655443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.79 Score=38.49 Aligned_cols=49 Identities=2% Similarity=0.021 Sum_probs=25.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCcChhcHHHHHHHH
Q 003725 226 SLNQFTYDIVIKALCKLARFEEAFDVLNEMNK-AGVTLHGHNYSTIIQGL 274 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~ 274 (800)
.|+..+..+++.+|+.+|++..|.++++...+ .+++.+..+|..|+.-.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45555555555555555555555555555543 23444444555554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.26 E-value=3.1 Score=35.99 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=69.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 003725 163 DAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKL 242 (800)
Q Consensus 163 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 242 (800)
..++..+...+....+...++.+...+ ..+....+.++..|++.+. +.....+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 346666666677788888888777766 3566677778877776543 333333331 12334444566666666
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN-GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFC 310 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 310 (800)
+.++++.-++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777776665421 22233333333 5666666655431 14445555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.9 Score=47.78 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=40.3
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHH
Q 003725 204 LLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVG 283 (800)
Q Consensus 204 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 283 (800)
..-.|+++.+.++...-.-.. .-+....+.+++.+-+.|..+.|+++...-. .-.....+.|+++.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 344555555555554111000 0113335555555555666665555533211 111223344555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003725 284 YDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRM 325 (800)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (800)
.++.++ ..+...|..|.+...+.|+++-|++.|.+.
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 443321 123445555555555555555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.41 Score=44.94 Aligned_cols=103 Identities=11% Similarity=0.057 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHH-----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcH
Q 003725 193 SKFTCNFFMNQLLK-----CGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNY 267 (800)
Q Consensus 193 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 267 (800)
|-.+|...+..+.. .+.++-.-..++.|.+.|+..|..+|+.|+..+-+-.-.. ..+|+..-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F----------- 132 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVF----------- 132 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHH-----------
Confidence 44455554444433 2344555555667777777777777777776654422111 01111110
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003725 268 STIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSR 314 (800)
Q Consensus 268 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (800)
-.|- .+-+-+..++++|...|+.||..+-..|++++.+.+.
T Consensus 133 ----~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 ----LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ----hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 0000 1122345566666666666666666666666655443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.06 E-value=6.8 Score=38.79 Aligned_cols=151 Identities=12% Similarity=0.110 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC--
Q 003725 592 NKAFKLLDTMLKLDAKPSKTTYDKVIGALCL--AG----KIKWAHQVFDFLTRHGL---IPDLISYTMLIHGFCKLNC-- 660 (800)
Q Consensus 592 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~-- 660 (800)
++.+.+++.+.+.|+.-+..+|.+..-.... .. ...+|..+++.|.+..+ .++-..+..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455677777777777666665443322222 12 24567777777775321 1223334444332 3333
Q ss_pred --HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCC
Q 003725 661 --LREACNIFKDMKLRGIKPDVV-LYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLE 737 (800)
Q Consensus 661 --~~~A~~~~~~m~~~g~~pd~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 737 (800)
.+++..+|+.+.+.|+..+.. -+.+-+-++.. .........+..+++.+.+.++++
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~------------~~~~~~v~r~~~l~~~l~~~~~ki--------- 215 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSE------------GDDQEKVARVIELYNALKKNGVKI--------- 215 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcc------------ccchHHHHHHHHHHHHHHHcCCcc---------
Confidence 344566777777777765433 23232323222 012233556777777777766665
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 738 PDTVCYTVLIARLCYTNNLVDALIVFDEM 766 (800)
Q Consensus 738 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 766 (800)
....|..++-.-.-.+..++.++.+.++
T Consensus 216 -k~~~yp~lGlLall~~~~~~~~~~i~ev 243 (297)
T PF13170_consen 216 -KYMHYPTLGLLALLEDPEEKIVEEIKEV 243 (297)
T ss_pred -ccccccHHHHHHhcCCchHHHHHHHHHH
Confidence 6666666655444444443544444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.4 Score=36.14 Aligned_cols=91 Identities=21% Similarity=0.089 Sum_probs=46.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCH
Q 003725 274 LCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKY---VYSALISGYCKCGNI 350 (800)
Q Consensus 274 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~ 350 (800)
+...|+++.|++.|.+.+.. .|.+..+||.-..++.-.|+.++|+.=+++..+..-..... .|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34455555555555555544 24455556666666655666666655555555442111111 222233345555666
Q ss_pred HHHHHHHHHHHHCCC
Q 003725 351 IKALSLHGEMTSIGI 365 (800)
Q Consensus 351 ~~A~~~~~~~~~~~~ 365 (800)
+.|..-|+..-+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 666666655555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.01 E-value=5.8 Score=37.78 Aligned_cols=54 Identities=26% Similarity=0.267 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 413 LCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
+...++.+.+...+..............+..+...+...++++.|...+.....
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 334445555555555544431110233344444444444445555555444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.95 E-value=7.2 Score=38.64 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCH----
Q 003725 284 YDLLLKWSENGIPLNAFAYTAVIREFCQ--N----SRLVEAESVLLRMKQLRV---TPDKYVYSALISGYCKCGNI---- 350 (800)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~---- 350 (800)
..+++.+.+.|+.-+..+|.+..-.... . ....+|..+|+.|++... .++...+..|+.. ..++.
T Consensus 82 ~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~ 159 (297)
T PF13170_consen 82 LDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELA 159 (297)
T ss_pred HHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHH
Confidence 3455555666555555444432222221 1 124566677777776521 2344445444433 22222
Q ss_pred HHHHHHHHHHHHCCCCch
Q 003725 351 IKALSLHGEMTSIGIKTN 368 (800)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~ 368 (800)
+.+..+|+.+.+.|....
T Consensus 160 ~~~E~~Y~~L~~~~f~kg 177 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKG 177 (297)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 334445555555554433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.21 Score=32.76 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPNIV-IYKAL 781 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 781 (800)
.+|..++..|...|++++|+++|+++++. .|+.. .+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 46788999999999999999999999964 55554 44444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.88 E-value=16 Score=42.37 Aligned_cols=103 Identities=19% Similarity=0.174 Sum_probs=50.5
Q ss_pred hcCCHHHHHHHHHHHHhccCccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 003725 520 TSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLD 599 (800)
Q Consensus 520 ~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 599 (800)
..+.+++|.-.|+. .. ....-+.+|..+|+|.+|+.+..++....-. -...-..|..-+...++.-+|-+++.
T Consensus 951 ~~~~~~~Aal~Ye~-~G-----klekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~ 1023 (1265)
T KOG1920|consen 951 EELMSDEAALMYER-CG-----KLEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILL 1023 (1265)
T ss_pred HhccccHHHHHHHH-hc-----cHHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHH
Confidence 34555555555541 11 1223345555666666666555544321100 00011345555666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003725 600 TMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLT 637 (800)
Q Consensus 600 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 637 (800)
+.... | .-.+..|++...+++|.++-....
T Consensus 1024 e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1024 EYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 55431 1 123445666677777776655443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.4 Score=45.27 Aligned_cols=65 Identities=9% Similarity=-0.095 Sum_probs=45.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCh----hcHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003725 227 LNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHG----HNYSTIIQGLCENGRLDVGYDLLLKWSEN 293 (800)
Q Consensus 227 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 293 (800)
.+...++.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|...|++++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777777777888888888887777653 442 34677777777777777777777777664
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.81 E-value=6.4 Score=40.89 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 302 YTAVIREFCQNSRLVEAESVLLRMKQLRVT-PDKYVYSALISGYCKCGNIIKALSLHGEMTS 362 (800)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 362 (800)
-..+..++-+.|+.++|.+.+++|.+.... ........|+.++...+.+.++..++.+.-+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344555555666666666666666543211 1222444566666666666666666666543
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.7 Score=42.44 Aligned_cols=88 Identities=17% Similarity=0.077 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003725 590 YNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFK 669 (800)
Q Consensus 590 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 669 (800)
+..+|.++.++.++.+ +.|+.....+..+....|+++.|...|++....++. ....|........-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556777777777776 567777777777778888899999999988886555 56666666666778899999999999
Q ss_pred HHHHcCCCCCHH
Q 003725 670 DMKLRGIKPDVV 681 (800)
Q Consensus 670 ~m~~~g~~pd~~ 681 (800)
+.++ +.|...
T Consensus 397 ~alr--LsP~~~ 406 (458)
T PRK11906 397 KSLQ--LEPRRR 406 (458)
T ss_pred HHhc--cCchhh
Confidence 8665 456543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.3 Score=34.97 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=71.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCch---HHHHHHHHHHHhcC
Q 003725 307 REFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI-GIKTN---YVVSVILKCLCQMG 382 (800)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g 382 (800)
-++...|+++.|++.|.+.... .+.....||.-..++.-.|+.++|++-+++..+. |.... ..+..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567789999999999998875 2347788999999999999999999998888764 33322 45555666777888
Q ss_pred CHHHHHHHHHHHHHCCC
Q 003725 383 KTSEAIKKFKEFKSMGI 399 (800)
Q Consensus 383 ~~~~a~~~~~~~~~~~~ 399 (800)
+.+.|..-|+..-+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888887777663
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.69 E-value=4.2 Score=35.11 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 269 TIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ 311 (800)
Q Consensus 269 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 311 (800)
.++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 33444444444444444444444443 2333444444444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.67 E-value=13 Score=40.66 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003725 409 IMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGS 488 (800)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 488 (800)
-+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-+++-+... .+.-|.-...+|.+.|+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 3334444555555555554443 2455555555555555555555444333222 23334445555556666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003725 489 VRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAF 530 (800)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 530 (800)
.++|.+++.+... .. ..+.+|.+.|++.+|.+.
T Consensus 760 ~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 6666555543321 11 334555555555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.60 E-value=12 Score=39.94 Aligned_cols=374 Identities=9% Similarity=-0.021 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHHHHHHHHHH-ccCChHHHHHHHHHc
Q 003725 107 HTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYC-SERMFDQALNVLFQT 185 (800)
Q Consensus 107 ~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~~ 185 (800)
--|...+..=.+.|..+.+..++++.+...+ .+...|.....-++ ..|+.+...+.|+++
T Consensus 80 gyW~kfA~~E~klg~~~~s~~Vfergv~aip-------------------~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 80 GYWKKFADYEYKLGNAENSVKVFERGVQAIP-------------------LSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh-------------------hHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3455555555668889999999998877632 23444444444433 457777878888776
Q ss_pred cCC-CC-ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH---hcC------ChhHHHHHHHH
Q 003725 186 DRP-GF-VWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALC---KLA------RFEEAFDVLNE 254 (800)
Q Consensus 186 ~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g------~~~~A~~~~~~ 254 (800)
... |. -.+...|...+..-..++++.....+++.+++. ....|+.....|. +.. ..+++.++=..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 652 21 124456777888888899999999999999874 2223333333332 221 12222222211
Q ss_pred HHhC---C-CCcChhcHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-
Q 003725 255 MNKA---G-VTLHGHNYSTIIQGLC-ENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQL- 328 (800)
Q Consensus 255 ~~~~---~-~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 328 (800)
.... . ..+.......-+.-.. ..+.++++...+.+... ..-..+-..-...+....|+.-.+.
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~Ikrp 285 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRP 285 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhcccc
Confidence 1110 0 0000000000000000 00111111111111110 0111112222223333334443332
Q ss_pred --CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--
Q 003725 329 --RVT----PDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIF-- 400 (800)
Q Consensus 329 --~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 400 (800)
.+. ++..+|..-+.--...|+++.+.-+|+...-.--.-+..|...+.-....|+.+-|..++....+-..+
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 122 245678888888889999999999998877544444466777777777778888888777766554333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCHHHH
Q 003725 401 LDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVA-NYTTVIDGYILRGKLVDAI---GLFKKMREMGHKPDIKAY 476 (800)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~ 476 (800)
|......+.+ .-..|+++.|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++....... -+..+.
T Consensus 366 ~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~ 439 (577)
T KOG1258|consen 366 PIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGIL 439 (577)
T ss_pred cHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchh
Confidence 3333333333 234579999999999988763 3432 2222244556677777777 3333332211 122222
Q ss_pred HHHHHHH-----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003725 477 NVLARGL-----AQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTS 521 (800)
Q Consensus 477 ~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (800)
..+.--+ .-.++.+.|..++.++.+. .+++...+..++......
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 2222222 2357888888888888876 466666666666654443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.55 E-value=12 Score=39.88 Aligned_cols=181 Identities=11% Similarity=-0.073 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CccCHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 003725 507 NVITHNMIIEGLCTSGRVKEARAFFDDDLKEK--CLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTN 584 (800)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (800)
+..+|..-+..-.+.|+.+.+.-+|++.+..- ...-|-..+.-....|+.+-|..++....+-...-.+.+...-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34556666666667788877777777544432 2223444444444557777777777666655444333333333333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHH---HHHHHHHCCCCCCHHHHHHHHH-----HH
Q 003725 585 LLIEGYNNKAFKLLDTMLKLDAKPSKT-TYDKVIGALCLAGKIKWAHQ---VFDFLTRHGLIPDLISYTMLIH-----GF 655 (800)
Q Consensus 585 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~li~-----~~ 655 (800)
.-..|+.+.|..+++.+...- |+.. .-..-+....+.|+.+.+.. ++....+... +......+.- .+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRY 451 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHH
Confidence 445678888988888887653 4432 22233445567788777773 3333322111 2222222221 23
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 656 CKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 656 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
.-.++.+.|..++.++.+. ..++...|..+++-+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 3467888999999999875 45566667777776665
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=4.7 Score=35.22 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=84.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChh-cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH--HHHHHHhcCCh
Q 003725 551 CEANHLEEAFQFFMTLSQRGFLMRSE-SCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKT-TYDK--VIGALCLAGKI 626 (800)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g~~ 626 (800)
.+.+..++|+.-|.++.+.|...-+. ............|+...|+..|+++-.....|-.. -... -...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45567778888888887776542221 12233345667788888888888887654334332 1111 12345678888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003725 627 KWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 627 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 680 (800)
+....-.+-+...+-..-...-..|.-+-.+.|++.+|.+.|+++......|..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 888877777664433334555677777788999999999999998865445543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=5 Score=35.10 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 415 KLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMRE 466 (800)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 466 (800)
..|.++....-.+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444443332222233333444444455555555555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.33 Score=31.75 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 648 YTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 648 ~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
|..+...|.+.|++++|.++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.01 E-value=17 Score=40.08 Aligned_cols=205 Identities=10% Similarity=0.022 Sum_probs=101.1
Q ss_pred CccCHHHHHHHHHccC-----CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCH
Q 003725 539 CLENYSAMVDGYCEAN-----HLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIE---GYNNKAFKLLDTMLKLDAKPSK 610 (800)
Q Consensus 539 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~ 610 (800)
.+.....+..+|.+.. +.+.|+.++.+..+.|.. .....+...+..- .+...|.++|....+.|. +..
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A 362 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILA 362 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHH
Confidence 3334455555555432 455566666666666532 2222222222222 345677777777777663 222
Q ss_pred HHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003725 611 TTYDKVIGALC--LAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCD 688 (800)
Q Consensus 611 ~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~ 688 (800)
..+..+..... ...+.+.|..++.+..+.|. |-..--...+..+.. +..+.+.-.+..+.+.|.+--...-..++.
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~ 440 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLD 440 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHH
Confidence 22222211111 23367788888888888762 222222222333334 777777777777776654322222112222
Q ss_pred HHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhc---C-CHHHHHHHHH
Q 003725 689 AYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYT---N-NLVDALIVFD 764 (800)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~ 764 (800)
.... .. ...........+...+......| +......|+++|... + +++.|...+.
T Consensus 441 ~~~~-~~-------~~~~~~~~~~~~~~~~~~a~~~g-------------~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~ 499 (552)
T KOG1550|consen 441 QSEE-DL-------FSRGVISTLERAFSLYSRAAAQG-------------NADAILKLGDYYYYGLGTGRDPEKAAAQYA 499 (552)
T ss_pred hccc-cc-------cccccccchhHHHHHHHHHHhcc-------------CHHHHhhhcceeeecCCCCCChHHHHHHHH
Confidence 1110 00 00011224455555555544333 666667777766654 2 4777777777
Q ss_pred HHHHCC
Q 003725 765 EMIDRG 770 (800)
Q Consensus 765 ~~~~~g 770 (800)
.....+
T Consensus 500 ~a~~~~ 505 (552)
T KOG1550|consen 500 RASEQG 505 (552)
T ss_pred HHHHhh
Confidence 776554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.73 E-value=5 Score=39.52 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=82.5
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHh
Q 003725 413 LCKLGEVEEAVKLFNEMEGR--QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM--GHKPD---IKAYNVLARGLAQ 485 (800)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~ 485 (800)
+....+.++|+..+.....+ +...-..++..+..+.++.|.+++++..--.-++. ...-. ...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888777776554 11112345666677777788777766543222211 01101 1233444444444
Q ss_pred cCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--------ccCHHHHHHHHHcc
Q 003725 486 YGSVRDALDCLKYMKKQ-GVKP---NVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC--------LENYSAMVDGYCEA 553 (800)
Q Consensus 486 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~l~~~~~~~ 553 (800)
.-++.+++.+-+.-... |..| -......+..++...+.++++.+.|+..++-.. ...+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444454444433321 2222 112334456666777777888888776554221 12267777777777
Q ss_pred CCHHHHHHHHHHHH
Q 003725 554 NHLEEAFQFFMTLS 567 (800)
Q Consensus 554 g~~~~A~~~~~~~~ 567 (800)
.++++|+-...+..
T Consensus 176 ~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 176 KDYEKALFFPCKAA 189 (518)
T ss_pred HhhhHHhhhhHhHH
Confidence 77777776665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.67 E-value=4 Score=34.77 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=32.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003725 345 CKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALC 414 (800)
Q Consensus 345 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 414 (800)
.+.|++++|.+.|+.+...-+... .+...++.++.+.+++++|...++++.+..+.-...-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344555555555555544433322 3444445555555555555555555555443322333444444433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=9.4 Score=39.61 Aligned_cols=159 Identities=11% Similarity=0.017 Sum_probs=86.1
Q ss_pred HHHHHHHHhc-----CChhHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCC
Q 003725 268 STIIQGLCEN-----GRLDVGYDLLLKWSEN-GIPL-NAFAYTAVIREFCQ---------NSRLVEAESVLLRMKQLRVT 331 (800)
Q Consensus 268 ~~li~~~~~~-----g~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~ 331 (800)
..++.+.... ...+.|+.+|.+.... ...| ....|..+..++.. .....+|.+.-+...+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 4455554432 2345677777777721 1222 23444444333322 223445566666666654 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003725 332 PDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFL-DQVCYNVIM 410 (800)
Q Consensus 332 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li 410 (800)
-|......+..+..-.++++.|...|++....++....++......+.-.|+.++|.+.+++..+..+.- -.......+
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 4666666666666666777777777777776655544666666666666777777777777655543221 122223333
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 003725 411 DALCKLGEVEEAVKLFNE 428 (800)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~ 428 (800)
+.|+.. .++.|.+++-+
T Consensus 416 ~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 416 DMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHcCC-chhhhHHHHhh
Confidence 355543 34555555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.64 E-value=6.9 Score=34.61 Aligned_cols=135 Identities=11% Similarity=0.142 Sum_probs=79.6
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003725 215 VLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG 294 (800)
Q Consensus 215 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 294 (800)
+.+..+.+.+++|+...+..++..+.+.|++....++ ...++-+|.......+-.+. +.+..+.++--.|.++=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 4455556677788888888888888888876554444 44445555554444432222 23444555544554430
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 295 IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSI 363 (800)
Q Consensus 295 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (800)
...+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++-....
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 124566777888888888888887765332 2222234566666666666666666555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.96 Score=42.60 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 003725 226 SLNQFTYDIVIKALCK-----LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAF 300 (800)
Q Consensus 226 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 300 (800)
+.|-.+|-..+..+.. .+.++=....++.|.+.|+..|..+|+.|+..+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 3566677777776654 3455666666777888888888888888877654422 11211
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 003725 301 AYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNI-IKALSLHGEMT 361 (800)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 361 (800)
.+..+.--|- .+-+-++.++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1222211121 22345788999999999999999999999999887753 33444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.38 E-value=4.8 Score=39.16 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=84.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH--HHHHHHHHhcCCHHH
Q 003725 416 LGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI--KAY--NVLARGLAQYGSVRD 491 (800)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~--~~l~~~~~~~g~~~~ 491 (800)
.|+..+|-..++++.+. .+.|..++.-.=.++.-.|+.+.-...++++... ..||. ..| ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45556666666666654 2335566665566666677766666666666543 11222 222 222334455677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC------ccCHHHHHHHHHccCCHHHHHHHHHH
Q 003725 492 ALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKC------LENYSAMVDGYCEANHLEEAFQFFMT 565 (800)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (800)
|.+.-++..+.+ +.|.....+....+...|+..++.++..+.-..-. ..+|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777666654 55666666666666677777777776652111111 11244444456666788888888865
Q ss_pred HH
Q 003725 566 LS 567 (800)
Q Consensus 566 ~~ 567 (800)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.35 E-value=10 Score=35.96 Aligned_cols=223 Identities=18% Similarity=0.111 Sum_probs=123.3
Q ss_pred CChhHHHHHHHHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003725 243 ARFEEAFDVLNEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN-GIPLNAFAYTAVIREFCQNSRLVEAES 320 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 320 (800)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433211 12344555555556666666666655555542 223344455555556666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCC--ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 321 VLLRMKQLRVTPDKYVYSALIS-GYCKCGNIIKALSLHGEMTSIGIK--TN-YVVSVILKCLCQMGKTSEAIKKFKEFKS 396 (800)
Q Consensus 321 ~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 396 (800)
.+.........+ ......... .+...|+++.|...+......... .. .........+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543222 111222222 566777777777777776542221 11 3333344446667777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 397 MGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
.........+..+...+...++++.|...+......... ....+..+...+...+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 543323556667777777788888888888888765322 2333444444444556677777777776654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.09 E-value=13 Score=36.65 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHH
Q 003725 518 LCTSGRVKEARAFFD 532 (800)
Q Consensus 518 ~~~~g~~~~a~~~~~ 532 (800)
+.+.+++++|.+.|+
T Consensus 256 ~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYE 270 (278)
T ss_pred HHhhcCHHHHHHHHH
Confidence 445677777777766
|
It is also involved in sporulation []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.06 E-value=13 Score=36.63 Aligned_cols=129 Identities=15% Similarity=0.084 Sum_probs=64.2
Q ss_pred HhCCChhHHHHHHHHHHHhcCC-CchHHHHHHHHHhhcCCCchHHHHHHHHHHHHccC-ChHHHHHHHHHccCC------
Q 003725 117 CYCGRQKKLESLLRELVQKMND-LNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSER-MFDQALNVLFQTDRP------ 188 (800)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~------ 188 (800)
++.|+++.|..++.++...... .+..+. .-.+++-.+.......+ +++.|...+++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~------------~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~ 71 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAE------------ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK 71 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHH------------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh
Confidence 4566777777776665443211 111110 11233444455555556 888887777664332
Q ss_pred --CCccCH-----HHHHHHHHHHHHcCChh---HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003725 189 --GFVWSK-----FTCNFFMNQLLKCGEVD---MVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKA 258 (800)
Q Consensus 189 --~~~~~~-----~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 258 (800)
...++. .++..++.+|...+..+ +|..+++.+.+. .+..+..+..-++.+.+.++.+++.+.+..|...
T Consensus 72 ~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 72 MDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 111222 23455566666655443 344455555332 1112334444455555566677777777776654
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=4.6 Score=39.33 Aligned_cols=114 Identities=11% Similarity=-0.056 Sum_probs=50.6
Q ss_pred cCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHH
Q 003725 242 LARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN---GIPLNAFAYTAVIREFCQNSRLVEA 318 (800)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 318 (800)
.|+..+|-..++++++.- +.|...+...=.++.-.|+.+.-...++++... +.|-...+-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455555555555555432 234444444445555555555555555554433 1111111112222233345555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003725 319 ESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLH 357 (800)
Q Consensus 319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 357 (800)
++.-++..+.+ +.|...-.+..+.+--.|++.++.+.+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 55555544433 223444444444444444444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.02 E-value=6.3 Score=35.41 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=52.4
Q ss_pred HHHHHHHccCChHHHHHHHHHccCCCCc--cCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 003725 164 AMVKAYCSERMFDQALNVLFQTDRPGFV--WSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCK 241 (800)
Q Consensus 164 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 241 (800)
.+.+.+...|+++.|...++........ ....+--.|.++....|.+|+|+..++.....++ .......-...+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3445566677777777777665532111 1112223445566667777777777766655332 22223344556666
Q ss_pred cCChhHHHHHHHHHHhCC
Q 003725 242 LARFEEAFDVLNEMNKAG 259 (800)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~ 259 (800)
.|+-++|+.-|++....+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 677777777777666654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.15 Score=31.08 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=21.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHH
Q 003725 739 DTVCYTVLIARLCYTNNLVDALI 761 (800)
Q Consensus 739 ~~~~~~~l~~~~~~~g~~~~A~~ 761 (800)
|...|+.|+.+|...|++++|++
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhcC
Confidence 99999999999999999999963
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.39 Score=29.74 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMK 672 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~ 672 (800)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999999865
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.81 E-value=26 Score=39.44 Aligned_cols=190 Identities=15% Similarity=0.049 Sum_probs=101.9
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---HHH--HHHH
Q 003725 586 LIEGYNNKAFKLLDTMLKL----DAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYT---MLI--HGFC 656 (800)
Q Consensus 586 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~li--~~~~ 656 (800)
...|+.++|.++.+..+.. ...+....+..+..+..-.|++++|..+.....+..-..++..+. .+. ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3456667776666665543 223445556677777888899999988887666532222433333 222 2345
Q ss_pred hcCC--HHHHHHHHHHHHHcC--CCC----CHHHHHHHHHHHhccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCc
Q 003725 657 KLNC--LREACNIFKDMKLRG--IKP----DVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISP 728 (800)
Q Consensus 657 ~~g~--~~~A~~~~~~m~~~g--~~p----d~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 728 (800)
..|+ +++....|....... -.| -..+...++.++.+. .+...++..-++.-......|
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~--------------~~~~~ear~~~~~~~~~~~~~ 614 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL--------------DLAEAEARLGIEVGSVYTPQP 614 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH--------------hhhhHHhhhcchhhhhcccch
Confidence 6673 333334444433221 112 223444455555441 223333333333222222222
Q ss_pred hhhhccCCCCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHc--cccCCCCHHHHHhhhc
Q 003725 729 DVMLGQGLEPDTV--CYTVLIARLCYTNNLVDALIVFDEMIDRGLEP----NIVIYKALLC--GCPTKKDVDKYLSLFA 799 (800)
Q Consensus 729 ~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~--~~~~~g~~~~A~~~~~ 799 (800)
-.. .+..|+.++...|+.++|...++++......+ +..+-...+. .....||.++|..+..
T Consensus 615 ----------~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 615 ----------LLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred ----------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 222 23478899999999999999999887543333 3223233333 3356799999887654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.21 Score=30.41 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN 774 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 774 (800)
.+|..++.+|...|++++|++.|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4688999999999999999999999985 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.71 E-value=15 Score=36.43 Aligned_cols=228 Identities=13% Similarity=0.077 Sum_probs=135.8
Q ss_pred CChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHhcCCCchHHHHHHHHHhhcCCCchHHHH
Q 003725 85 KDPGAALTFFELLKAR--GFRHNVHTYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVS 162 (800)
Q Consensus 85 ~~~~~A~~~f~~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 162 (800)
++...|+..+.....+ .....-.+|..+..+.+..|+++++...--..+....+. +.......+|
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-------------~ds~~~~ea~ 86 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-------------EDSDFLLEAY 86 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 5667777777765422 111134677778888888888877665433333221110 1112234567
Q ss_pred HHHHHHHHccCChHHHHHHHHHccC-CCCcc---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-----CCCHHhHH
Q 003725 163 DAMVKAYCSERMFDQALNVLFQTDR-PGFVW---SKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGF-----SLNQFTYD 233 (800)
Q Consensus 163 ~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~~~~ 233 (800)
..+.+++-+.-++.+++.+-..-.. .|..+ --....++..++.-.+.++.+++.|+...+... ......+.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 7777777777777777776554332 11111 112344566777777888899988888754321 12345788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh----CCCCcCh-hcH-----HHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-C
Q 003725 234 IVIKALCKLARFEEAFDVLNEMNK----AGVTLHG-HNY-----STIIQGLCENGRLDVGYDLLLKWSE----NGIPL-N 298 (800)
Q Consensus 234 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~ 298 (800)
.|...|.+..++++|.-+..+..+ .++. |. .-| -.|.-++...|.+..|.+.-++..+ .|-.+ -
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 888899999999988877665543 2222 22 112 2244456677888878777766654 34211 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003725 299 AFAYTAVIREFCQNSRLVEAESVLLRMK 326 (800)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (800)
......+.+.|...|+.+.|..-|+...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334566778888899888887777654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.33 E-value=3.5 Score=37.25 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 336 VYSALISGYCKCGNIIKALSLHGEMTSIGIKTN---YVVSVILKCLCQMGKTSEAIKKFKEF 394 (800)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 394 (800)
.+..+...|++.|+.++|++.|.++.+....+. ..+..+++.....+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555555555555444433 33344444444455555444444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.26 Score=30.02 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=20.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 633 FDFLTRHGLIPDLISYTMLIHGFCKLNCLREAC 665 (800)
Q Consensus 633 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 665 (800)
|++.++..+. +...|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3445555444 6677777777777777777764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.27 E-value=12 Score=34.30 Aligned_cols=187 Identities=18% Similarity=0.075 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003725 554 NHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVF 633 (800)
Q Consensus 554 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 633 (800)
|-+.-|.--|.+.....+. -+.+++.+.--+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 3344444444444433322 24456666666667777777777777777665332322222222 233567888887766
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCCCCCCCCcccCchhHH
Q 003725 634 DFLTRHGLI-PDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSKINKRGSSSSPHTLRSNEEVV 712 (800)
Q Consensus 634 ~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (800)
...-+.++. |-...|-.++ .+.-+..+|..-+.+--+ ..|..-|...|-.+.- |..
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gki---------------- 213 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKI---------------- 213 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhc----------------
Confidence 665554433 2222232222 234456666554433222 2344445444444432 110
Q ss_pred HHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 713 DASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDR 769 (800)
Q Consensus 713 ~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 769 (800)
..+.+++.+++..... .... .--.+||--|++-|...|+.++|..+|+-.+..
T Consensus 214 S~e~l~~~~~a~a~~n-~~~A---e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 214 SEETLMERLKADATDN-TSLA---EHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHhhccch-HHHH---HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1122333333211110 0000 003468888999999999999999999988753
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.26 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMIDRGLEPN 774 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 774 (800)
..|..++.+|...|++++|++.|++.++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3578899999999999999999999984 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.84 E-value=21 Score=36.57 Aligned_cols=145 Identities=15% Similarity=0.178 Sum_probs=105.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRG-FLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALC 621 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (800)
|...+....+..-.+.|..+|-++.+.+ ..++...+++++.-+ ..|+...|..+|+--+..- +.+..--...+.-+.
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fLi 477 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF-PDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 6667777778888999999999999988 445555666666544 5678888999998755442 233333345666778
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 622 LAGKIKWAHQVFDFLTRHGLIPD--LISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 622 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
..++-+.|..+|+..+++ +..+ ...|..+|.--..-|+...|..+=++|.+ +-|...+..+...-|.-
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 899999999999976643 2213 56899999988899999999999888886 46666665555555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.29 E-value=3.4 Score=39.94 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 003725 611 TTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL-----RGIKPDVVLYTI 685 (800)
Q Consensus 611 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~~ 685 (800)
.++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35667778888888888888888888887666 788888889999999999999888888764 578887777666
Q ss_pred HHHH
Q 003725 686 LCDA 689 (800)
Q Consensus 686 ll~~ 689 (800)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.8 Score=40.56 Aligned_cols=58 Identities=9% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 003725 543 YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTM 601 (800)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 601 (800)
+..++..+...|+.+.+.+.++++....+. +...+..++.+|...|+...|+..|+++
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 344444555555555555555555554443 4444444444444444444444444444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.81 Score=27.70 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 646 ISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 646 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
..|..++.+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777777777777777777777776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.85 E-value=16 Score=33.50 Aligned_cols=179 Identities=15% Similarity=0.038 Sum_probs=89.9
Q ss_pred CChHHHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 003725 173 RMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVL 252 (800)
Q Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 252 (800)
|-+.-|.--|.+..... +.-+.+||.|.--+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHH
Confidence 44444444444444432 2245678888888888999999999999888765332333333333333 357888887777
Q ss_pred HHHHhCCCC-cChhcHHHHHHHHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003725 253 NEMNKAGVT-LHGHNYSTIIQGLCENGRLDVGYD-LLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRV 330 (800)
Q Consensus 253 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 330 (800)
.+.-+.+.. |-...|--+ --+.-+..+|.. +.++..+. +..-|...|..+. .|++. .+.+++.+....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a- 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKIS-EETLMERLKADA- 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhc-
Confidence 666554311 211222222 223445556643 33333332 3333333332221 12211 122333333211
Q ss_pred CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003725 331 TP-------DKYVYSALISGYCKCGNIIKALSLHGEMTSI 363 (800)
Q Consensus 331 ~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 363 (800)
.. =..||-.|...+...|+.++|..+|+-....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 1235555666666667777776666665554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.66 E-value=19 Score=34.10 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC--
Q 003725 402 DQVCYNVIMDALCKLGEVEEAVKLFNEMEGR-----QIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM-----GH-- 469 (800)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-- 469 (800)
+..+.|++++......+.+-...+++.-.+. +-..--.|-..|...|...|.+.+..++++++.+. |-
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 3455667776666666665555555443221 11111223355677777888888888888877543 10
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHh
Q 003725 470 ----KPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQ-GVKPNVITHNMIIE----GLCTSGRVKEARAFFDDDLK 536 (800)
Q Consensus 470 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~ 536 (800)
..-...|..-|+.|....+-.....++++.... ..-|.+.....+-. +..+.|++++|..-|-++.+
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 001345666777787777777777777766542 22344444333221 34456777777654443444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.26 E-value=40 Score=37.37 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=62.9
Q ss_pred HHHHHccCChHHHHHHHHHccCCCCcc---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 003725 166 VKAYCSERMFDQALNVLFQTDRPGFVW---SKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKL 242 (800)
Q Consensus 166 l~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 242 (800)
++-+.+.+.+++|+++-+..... .+ -.......++.|...|++++|-...-.|.. .+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 44456668888888876654432 22 233556677778888888888888777765 3556666666666666
Q ss_pred CChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHh
Q 003725 243 ARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCE 276 (800)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 276 (800)
++......+ +.......+..+|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655443333 2222223455667777776665
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.1 Score=27.05 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 646 ISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 646 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
..|..+...|...|++++|++.|++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777888888888888888776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.84 Score=29.21 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4789999999999999999999999864
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.28 E-value=14 Score=33.49 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 369 YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLD--QVCYNVIMDALCKLGEVEEAVKLFNEME 430 (800)
Q Consensus 369 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (800)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4455566666666666666666666655433322 2234455555556666666665555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.13 E-value=47 Score=36.83 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=54.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcChhcHHHHHHHHHhc
Q 003725 201 MNQLLKCGEVDMVLVLYEEMKSVGFSL---NQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (800)
++.+.+.+.+++|+...+..... .| -.......|..+.-.|++++|-...-.|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 55666677777777766654432 22 233455666666677777777776666653 2444555555555544
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 278 GRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ 311 (800)
Q Consensus 278 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 311 (800)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 444322221 1111112345566666666655
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.56 E-value=53 Score=36.78 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh-
Q 003725 373 VILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQI-VPDVANYTTVIDGYIL- 450 (800)
Q Consensus 373 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~- 450 (800)
.....+.-.|+++.|++.+.+ ......+.+.+...+.-|.-.+-.+... ..+..... .|....+..||..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 344455566777777777655 1222234444443333322211111111 22221110 0111456667777765
Q ss_pred --cCCHHHHHHHHHHHHH
Q 003725 451 --RGKLVDAIGLFKKMRE 466 (800)
Q Consensus 451 --~g~~~~A~~~~~~~~~ 466 (800)
..+..+|..+|--+..
T Consensus 338 F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 338 FEITDPREALQYLYLICL 355 (613)
T ss_dssp TTTT-HHHHHHHHHGGGG
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 3466677777666544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.53 E-value=20 Score=31.80 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=15.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003725 425 LFNEMEGRQIVPDVANYTTVIDGYILRGKL 454 (800)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 454 (800)
.++.+.+.+++|+...+..+++.+.+.|++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333344445555555555555555555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.38 E-value=19 Score=31.46 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 414 CKLGEVEEAVKLFNEMEGRQIVPDVANYTT-VIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
.+.++.+++..++..+... .|....... -...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445566666666655543 222221111 122344556666666666665443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.93 E-value=8 Score=40.97 Aligned_cols=47 Identities=13% Similarity=0.000 Sum_probs=25.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003725 309 FCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMT 361 (800)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 361 (800)
..+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|....
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 344556666555544432 44556666666666666666666655443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.86 E-value=23 Score=31.95 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=22.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003725 412 ALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREM 467 (800)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 467 (800)
.....|.+|+|+.+++.....+. .......-.+.+...|+-++|..-|.+.++.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33344444444444444443321 1111222233444444445555544444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.80 E-value=21 Score=31.26 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=7.3
Q ss_pred hcCChhHHHHHHHHHH
Q 003725 241 KLARFEEAFDVLNEMN 256 (800)
Q Consensus 241 ~~g~~~~A~~~~~~~~ 256 (800)
+.|++.+|..+|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 4444444444444443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.29 E-value=65 Score=36.51 Aligned_cols=162 Identities=10% Similarity=0.086 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHccCCCCccCHHHHHHHHHH----HHHcCChhHHHHHHHHHHhCCC--CCCHHhH
Q 003725 159 YRVSDAMVKAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQ----LLKCGEVDMVLVLYEEMKSVGF--SLNQFTY 232 (800)
Q Consensus 159 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~ 232 (800)
......--..|..+|..++|++.--.+.+ +..-..++.- +...+++.......+.+...-+ .|-....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d------~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGD------PEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCC------HHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHH
Confidence 45556666777777888877765443322 2222222222 2233343333333332211000 0111111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcChh-------cHHHHHH-HHHhcCChhHHHHHHHHHHhC----CCCCCHH
Q 003725 233 DIVIKALCKLARFEEAFDVLNEMNKAGVTLHGH-------NYSTIIQ-GLCENGRLDVGYDLLLKWSEN----GIPLNAF 300 (800)
Q Consensus 233 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 300 (800)
. +-......++.+|..+++++...-..|+.. .++.+-. .....|+++.|.++.+..... -..+...
T Consensus 421 ~--aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 421 Q--AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred H--HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 1 222334678888888888775532222221 2222222 223467778887777766653 1233455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003725 301 AYTAVIREFCQNSRLVEAESVLLRMKQL 328 (800)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (800)
.+..+..+..-.|++++|..+..+..+.
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 6666777777788888888777766554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.75 E-value=33 Score=32.55 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRH-----GLI------PDLISYTMLIHGFCKLNCLREACNIFKDMKLRG-IKPD 679 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd 679 (800)
|-..|...|...|++.+-.+++.++... |-. .=...|..=|..|....+-.+-..+|++.+.-. --|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345666777777777777777766531 110 024556666777777777777777777765321 2343
Q ss_pred HHHHHHHHHHHh
Q 003725 680 VVLYTILCDAYS 691 (800)
Q Consensus 680 ~~~~~~ll~~~~ 691 (800)
... .-+|.-|.
T Consensus 227 PlI-mGvIRECG 237 (440)
T KOG1464|consen 227 PLI-MGVIRECG 237 (440)
T ss_pred hHH-HhHHHHcC
Confidence 333 33455554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.74 E-value=62 Score=35.76 Aligned_cols=181 Identities=13% Similarity=0.005 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCcChhcHHHHHHHHHhc
Q 003725 210 VDMVLVLYEEMKSVGFSLNQFTYDIVIKA-----LCKLARFEEAFDVLNEMNK-------AGVTLHGHNYSTIIQGLCEN 277 (800)
Q Consensus 210 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 277 (800)
...|..+++...+.| +...-..+... +....+.+.|+.+|+.+.+ .| .......+...|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777888777765 22222222222 3355678888888888766 44 333556666666664
Q ss_pred C-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCC
Q 003725 278 G-----RLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ-NSRLVEAESVLLRMKQLRVTPDKYVYSALISGYC--KCGN 349 (800)
Q Consensus 278 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~ 349 (800)
. +.+.|..++....+.|. |+...+...+..... ..+...|.++|...-+.|.. +...+.+++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 3 55668888888887763 333333222222222 23567888888888777632 2222222221111 2346
Q ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 350 IIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGI 399 (800)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 399 (800)
.+.|..++.+..+.|..........+..+.. +..+.+.-.+..+.+.+.
T Consensus 380 ~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777777777777763222222223333333 555555555555555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.35 E-value=19 Score=35.04 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003725 400 FLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQ---IVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAY 476 (800)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 476 (800)
.....+...++..-....+++.++..+-++...- ..|+...+ +.+. ++-.-+.++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchhhH
Confidence 3344445555555555667777777766665431 11111111 1122 22233566777777777777888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 477 NVLARGLAQYGSVRDALDCLKYMKKQG 503 (800)
Q Consensus 477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 503 (800)
+.+++.+.+.+++.+|..+...|+.+.
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888777777776554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.14 E-value=38 Score=36.27 Aligned_cols=131 Identities=21% Similarity=0.191 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003725 369 YVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGY 448 (800)
Q Consensus 369 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 448 (800)
...+.++..+.++|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 34555666666677666666542 22211 1233456788888888776643 556788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 449 ILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEAR 528 (800)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 528 (800)
...|++..|.+.|..... |..|+-.+...|+-+....+-....+.| .. |...-+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHH
Confidence 888888888888876654 4455556666777766666666666665 22 23344667778888888
Q ss_pred HHHH
Q 003725 529 AFFD 532 (800)
Q Consensus 529 ~~~~ 532 (800)
+++.
T Consensus 742 ~lLi 745 (794)
T KOG0276|consen 742 ELLI 745 (794)
T ss_pred HHHH
Confidence 7766
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.96 E-value=2 Score=25.85 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 741 VCYTVLIARLCYTNNLVDALIVFDEMID 768 (800)
Q Consensus 741 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 768 (800)
.+|..++.+|...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999999874
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.84 E-value=22 Score=31.67 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003725 627 KWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLN-----------CLREACNIFKDMKLRGIKPDVVLYTILCDAYSK 692 (800)
Q Consensus 627 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 692 (800)
++|..-|++++..++. ...++..+.++|...+ .+++|.+.|++... ..|+...|+.-+..+.+
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 4444445555543333 3455666666665433 25566666666665 47888888777766544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.17 E-value=19 Score=28.49 Aligned_cols=46 Identities=9% Similarity=-0.014 Sum_probs=29.8
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003725 177 QALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKS 222 (800)
Q Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 222 (800)
+..+.++.+...+..|++....+.++++-+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5556666666667777777777777777777777777777777753
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.98 E-value=2.6 Score=26.78 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 645 LISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 645 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
..+++.|...|...|++++|..++++.++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888899999999999999888764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.81 E-value=16 Score=35.42 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003725 259 GVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG---IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKY 335 (800)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 335 (800)
|......+...++.......+++.+..++-++...- ..++. +-..+++.+. .-+.++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 334445555556665566667777777766665431 11111 1222333333 235567777777777888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003725 336 VYSALISGYCKCGNIIKALSLHGEMTSIG 364 (800)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 364 (800)
+++.+|+.+.+.+++..|..+.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.47 E-value=15 Score=33.19 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=44.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHHHHHHHHHHhcCCH
Q 003725 310 CQNSRLVEAESVLLRMKQLRVTPD-----KYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKT 384 (800)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 384 (800)
.+.|++++|..-|.+....- ++. ...|..-..++.+.+.++.|+.-..+.++.++....++..-..+|.+..++
T Consensus 106 F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34455555555554444431 111 122333344555566666666666555555554444444445555566666
Q ss_pred HHHHHHHHHHHHCC
Q 003725 385 SEAIKKFKEFKSMG 398 (800)
Q Consensus 385 ~~a~~~~~~~~~~~ 398 (800)
++|++-|+++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666665543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.38 E-value=53 Score=37.74 Aligned_cols=41 Identities=5% Similarity=0.040 Sum_probs=27.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003725 271 IQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQ 311 (800)
Q Consensus 271 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 311 (800)
+-.|......+-+..+++.+....-.++....+.++..|++
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34456667777778888887776555566667777777664
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.36 E-value=9.3 Score=29.76 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003725 628 WAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILC 687 (800)
Q Consensus 628 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll 687 (800)
++.+-++.+...++.|++....+.+.++.|.+++.-|.++|+-...+ +..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 34555566666667777777777777777777777777777766533 222333454444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.31 E-value=39 Score=31.50 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=14.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCch
Q 003725 345 CKCGNIIKALSLHGEMTSIGIKTN 368 (800)
Q Consensus 345 ~~~g~~~~A~~~~~~~~~~~~~~~ 368 (800)
+..+++.+|+++|+++.......+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 445667777777777666554443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.11 E-value=46 Score=32.17 Aligned_cols=70 Identities=20% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL-----RGIKPDVVL 682 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~ 682 (800)
+++...+.|..+|.+.+|.++.++....++- +...|..++..|...|+--.|.+-++++.+ .|+..|...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3456677899999999999999999987655 788899999999999998888887777653 356555443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.68 E-value=16 Score=28.85 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003725 248 AFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSE 292 (800)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 292 (800)
..+-+..+...+..|++.+..+.+++|.+.+++..|.++|+.++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.68 E-value=31 Score=35.87 Aligned_cols=123 Identities=12% Similarity=0.058 Sum_probs=74.9
Q ss_pred HHhcCChHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 003725 620 LCLAGKIKWAHQVFDFLT---RHGLIPD-----LISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDAYS 691 (800)
Q Consensus 620 ~~~~g~~~~A~~~~~~~~---~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~ 691 (800)
+...|++.+|.+.+...- ..|...+ ...||.|.-...+.|.+.-+..+|.+.+. +.|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~--------------N~c~ 315 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR--------------NSCS 315 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH--------------HHHH
Confidence 455788888877765432 1222212 23357777677788888888888887764 1222
Q ss_pred ccCCCCCCCCCCcccCchhHHHHHHHHHHHHHCCCCchhhhccCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003725 692 KINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIARLCYTNNLVDALIVFDEMIDRGL 771 (800)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 771 (800)
.+ ..|.+|..|+--.-..........+-.|...|++-.|.+.|.+.... +
T Consensus 316 qL-----------------------------~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-f 365 (696)
T KOG2471|consen 316 QL-----------------------------RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-F 365 (696)
T ss_pred HH-----------------------------hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-H
Confidence 21 11222222221122223333444566788999999999999998865 7
Q ss_pred CCCHHHHHHHHcccc
Q 003725 772 EPNIVIYKALLCGCP 786 (800)
Q Consensus 772 ~p~~~~~~~l~~~~~ 786 (800)
..++..|-.|..+|.
T Consensus 366 h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 366 HRNPRLWLRLAECCI 380 (696)
T ss_pred hcCcHHHHHHHHHHH
Confidence 778888888887773
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.00 E-value=9.2 Score=29.78 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCCcChhcHHHHHHHHHhcCChhHHHHHHHHHH
Q 003725 247 EAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWS 291 (800)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 291 (800)
++.+-+..+...+..|++.+..+.+++|.+.+|+..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.77 E-value=2.5 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003725 647 SYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 647 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 673 (800)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777777777777777777665
|
... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.61 E-value=54 Score=31.90 Aligned_cols=137 Identities=9% Similarity=0.134 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHccC-CCCccCHHHHHHHHHHHHHc-C-ChhHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 003725 174 MFDQALNVLFQTDR-PGFVWSKFTCNFFMNQLLKC-G-EVDMVLVLYEEMK-SVGFSLNQFTYDIVIKALCKLARFEEAF 249 (800)
Q Consensus 174 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~ 249 (800)
.+.+|++.|+..-. ..+..|...-..+++.+... + ....-.++.+-+. ..|-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 44556666663221 23345666667777776652 2 2222223333332 3334577777888888888888888888
Q ss_pred HHHHHHHhC-CCCcChhcHHHHHHHHHhcCChhHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHH
Q 003725 250 DVLNEMNKA-GVTLHGHNYSTIIQGLCENGRLDVGYDLLLK-----WSENGIPLNAFAYTAVIREFC 310 (800)
Q Consensus 250 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~~ 310 (800)
++++.-... +..-|...|...|......||..-...+..+ +.+.+++.+...-..+-+.+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 888877654 5556778888888888888888766665543 233456666666555555443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.47 E-value=16 Score=33.33 Aligned_cols=72 Identities=8% Similarity=-0.113 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003725 593 KAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTR---HGLIPDLISYTMLIHGFCKLNCLREAC 665 (800)
Q Consensus 593 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~ 665 (800)
.|...|-.+...+.-.++.....|.. |....+.+++..++....+ .+-.+|+..+.+|+..|.+.|+++.|.
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 33444444443332233333333333 3335555666665555553 222455666666666666666666553
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.67 E-value=3.6 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003725 745 VLIARLCYTNNLVDALIVFDEMIDRGLE 772 (800)
Q Consensus 745 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 772 (800)
.|..+|...|+.+.|.+++++..+.|-.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~~ 31 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGDE 31 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCH
Confidence 4788999999999999999999865433
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.13 E-value=14 Score=33.89 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=35.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003725 545 AMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLK 603 (800)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 603 (800)
..++.+.+.+..++++...++-.+..+. +...-..++..++-.|++++|..-++-.-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3455566666677777666666655443 455555666666677777776665555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 9e-16
Identities = 78/559 (13%), Positives = 156/559 (27%), Gaps = 204/559 (36%)
Query: 120 GRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAM--VKAYCSERMFDQ 177
E++L + + L +++ + + S SN+ R+ ++ + ++
Sbjct: 190 KNCNSPETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 178 ALNVLFQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIK 237
L VL V + N F L C +L+ T
Sbjct: 246 CLLVL---LN---VQNAKAWNAF---NLSC----KILLT--------------T------ 272
Query: 238 ALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKW---SENG 294
RF++ D L+ ++L H+ L D LLLK+
Sbjct: 273 ------RFKQVTDFLSAATTTHISLDHHS-----MTLTP----DEVKSLLLKYLDCRPQD 317
Query: 295 IPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKAL 354
+P RE + + + ++ T D + +
Sbjct: 318 LP----------REVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCD------------- 353
Query: 355 SLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKE-FKSMGIFLDQVCYNVIMDAL 413
K ++ L L + +E +++ F + +F ++ L
Sbjct: 354 -----------KLTTIIESSLNVL----EPAE----YRKMFDRLSVFPPSA--HIPTILL 392
Query: 414 CKL---GEVEEAVKLFNEMEGRQIVP-DVANYTTVIDGYILRGKLVDAIGLFKKMREMGH 469
+ + + + N++ +V T I L L K+
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE--------LKVKLEN--- 441
Query: 470 KPDIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARA 529
AL H I++ +
Sbjct: 442 --------------------EYAL-----------------HRSIVD------HYNIPKT 458
Query: 530 FFDDDLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNL---- 585
F DDL L+ Y G+ HL+ +R L R + +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGH----HLKNIEH-----PERMTLFR-----MVFLDFRFLE 504
Query: 586 --LI-EGYN-NKAFKLLDTMLKLDA-----KPSKTTYDKVIGALCLAGKIKWAHQVFDFL 636
+ + N + +L+T+ +L + Y++++ A+ DFL
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI------------LDFL 552
Query: 637 TRHGLIPDLIS--YTMLIH 653
+ +LI YT L+
Sbjct: 553 PKIE--ENLICSKYTDLLR 569
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.1 bits (180), Expect = 1e-13
Identities = 25/243 (10%), Positives = 62/243 (25%), Gaps = 32/243 (13%)
Query: 302 YTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMT 361
+++E L ++ + Q +++ + A + A L
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL----- 149
Query: 362 SIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEE 421
+ + L YN +M + G +E
Sbjct: 150 --------------------------LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 422 AVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIG-LFKKMREMGHKPDIKAYNVLA 480
V + ++ + PD+ +Y + + + I ++M + G K VL
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 481 RGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCL 540
+ ++ P + + ++ + +CL
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
Query: 541 ENY 543
Sbjct: 304 FEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.3 bits (178), Expect = 2e-13
Identities = 22/192 (11%), Positives = 59/192 (30%), Gaps = 7/192 (3%)
Query: 419 VEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHK---PDIKA 475
++ + Q+ +L +L A L K +
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 476 YNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDL 535
YN + G A+ G+ ++ + L +K G+ P+++++ ++ + + + +
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 536 KEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQ----RGFLMRSESCCKLLTNLLIEGYN 591
++ L+ + + + L + KLL ++ +
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287
Query: 592 NKAFKLLDTMLK 603
KL +
Sbjct: 288 VSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.5 bits (168), Expect = 3e-12
Identities = 29/220 (13%), Positives = 69/220 (31%), Gaps = 5/220 (2%)
Query: 216 LYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLC 275
L + + S + +++ + + ++A ++ +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 276 ENGRLDVGYDLLLKW---SENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTP 332
+L + + LL+ + L Y AV+ + + E VL +K +TP
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 333 DKYVYSALISGYCKCGNIIKALS-LHGEMTSIGIKTNYVVS-VILKCLCQMGKTSEAIKK 390
D Y+A + + + +M+ G+K + + V+L + K
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 391 FKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEME 430
F V + ++ + KL ++
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.9 bits (151), Expect = 3e-10
Identities = 32/229 (13%), Positives = 60/229 (26%), Gaps = 27/229 (11%)
Query: 573 MRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQV 632
E +LL + + + + L ++ AH +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 633 FDFLTRH---GLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVLYTILCDA 689
+ L Y ++ G+ + +E + +K G+ PD++ Y
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 690 YSKINKRGSSSSPHTLRSNEEVVDASDFLEEMKEMEISPDVMLGQGLEPDTVCYTVLIAR 749
R +++ LE+M + GL+ + VL++
Sbjct: 210 MG--------------RQDQDAGTIERCLEQMSQE----------GLKLQALFTAVLLSE 245
Query: 750 LCYTNNLVDALIVFDEMIDRGLEPNIVIYKALLCGCPTKKDVDKYLSLF 798
L V P V LL K Y L
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 8e-10
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 4/151 (2%)
Query: 200 FMNQLLKCGEVDM---VLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMN 256
F L ++ + +LV++ + L Y+ V+ + F+E VL +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 257 KAGVTLHGHNYSTIIQGLCENGRLDVGY-DLLLKWSENGIPLNAFAYTAVIREFCQNSRL 315
AG+T +Y+ +Q + + L + S+ G+ L A ++ E + + L
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 316 VEAESVLLRMKQLRVTPDKYVYSALISGYCK 346
V P S L+
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 9e-10
Identities = 26/212 (12%), Positives = 70/212 (33%), Gaps = 8/212 (3%)
Query: 121 RQKKLESLLRELVQKMNDLNFEVIDLFEALSK-EGSNVFYRVSDAMVKAYCSERMFDQAL 179
+++L LL+E K++ + + ++ G A K A
Sbjct: 91 WEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL---AFFKCCLLTDQLPLAH 147
Query: 180 NVL---FQTDRPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVI 236
++L + + + N M + G ++ + +K G + + +Y +
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 237 KALCKLARFEEAF-DVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGI 295
+ + + + L +M++ G+ L + ++ L + + +S
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
Query: 296 PLNAFAYTAVIREFCQNSRLVEAESVLLRMKQ 327
+ ++R+ V + L +K
Sbjct: 268 LPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 51/384 (13%), Positives = 107/384 (27%), Gaps = 33/384 (8%)
Query: 238 ALCKLARFEEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENG--I 295
A L F +A L+ ++ G + + L + + +L +
Sbjct: 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161
Query: 296 PLNAFAYTAV--------IREFCQNSRLVEAESVLLR-MKQLRVTPDKYVYSALISGYCK 346
P N + + +S A ++L +++L D+ A
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221
Query: 347 CGNIIKALSLHGEMTSIGIKTNYVVSVILK--CLCQMGKTSEAIKKFKEFKSMGIFLDQV 404
LS + ++ N +++ +A + +S+ +
Sbjct: 222 TDMYHSLLSANTV--DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPN 277
Query: 405 CYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILR--GKLVDAIGLFK 462
Y + L +E K F + + P+ G + +A F+
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQKAV--DLNPEYPPTYYHR-GQMYFILQDYKNAKEDFQ 334
Query: 463 KMREMGHKPD-IKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPN-VITHNMIIEGLCT 520
K + + P+ + Y LA L + G ++ + + + P E L
Sbjct: 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAF--FNETKLKFPTLPEVPTFFAEILTD 390
Query: 521 SGRVKEARAFFDD--DLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESC 578
G A +D L+E + + + +A L T +
Sbjct: 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450
Query: 579 CKLLTNL---LIEGYNNKAFKLLD 599
L + A L
Sbjct: 451 LTKACELDPRSEQAKIGLAQLKLQ 474
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 25/260 (9%)
Query: 316 VEAESVLLRMKQLRVTPDKYV-YSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVI 374
V A L L +TP++ V ++ G + + L + + + G+ VV++
Sbjct: 53 VHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIA 110
Query: 375 LK--CLCQMGKTSEAIKKFKEFKSMGIFLDQVC-YNVIMDALCKLGEVEEAVKLFNEMEG 431
+ + ++ G+ +QV L V+ + + +
Sbjct: 111 SHDGGKQALETVQRLLPVLC--QAHGLTPEQVVAIASHDGGKQALETVQALLPVLC--QA 166
Query: 432 RQIVPD--VANYTTVIDGYILR--GKLVDAIGLFKKMREMGHKPD-IKAYNVLARGLAQY 486
+ P+ VA + G + + + + + + P + A G
Sbjct: 167 HGLTPEQVVAIASN---GGGKQALETVQRLLPVLCQAHGL--TPQQVVAIASNGGGKQAL 221
Query: 487 GSVRDALDCLKYMKKQGVKPN-VITHNMIIEGLCTSGRVKEARAFFDD--DLKEKCLENY 543
+V+ L + G+ P V+ G V+ L + +
Sbjct: 222 ETVQRLLPV--LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 279
Query: 544 SAMVDGYCEANHLEEAFQFF 563
++ G ++
Sbjct: 280 ASNSGGKQALETVQRLLPVL 299
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 17/220 (7%)
Query: 326 KQLRVTPDKYV-YSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILK--CLCQMG 382
+ +TP + V ++ G + + L + + + G+ VV++ +
Sbjct: 267 QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQALE 324
Query: 383 KTSEAIKKFKEFKSMGIFLDQ-VCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVAN- 440
+ ++ G+ Q V L V+ + + + + P+
Sbjct: 325 TVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPEQVVA 380
Query: 441 YTTVIDGYILRGKLVDAIGLFKKMREMGHKPD-IKAYNVLARGLAQYGSVRDALDCLKYM 499
+ G + + + + G P+ + A G +V+ L
Sbjct: 381 IASNGGGKQALETVQRLLPVLCQ--AHGLTPEQVVAIASHDGGKQALETVQRLLPV--LC 436
Query: 500 KKQGVKPN-VITHNMIIEGLCTSGRVKEARAFFDDDLKEK 538
+ G+ P V+ G + + D L
Sbjct: 437 QAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAAL 476
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 25/213 (11%), Positives = 54/213 (25%), Gaps = 42/213 (19%)
Query: 378 LCQMGKTSEAIKKFK---EFKS--------MGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426
Q G T +A + E + + E + A + +
Sbjct: 47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT------------EMEPKLADEEY 94
Query: 427 NEMEGRQIVPDVA----NYTTVIDGYILR--GKLVDAIGLFKKMREMGHKPDI-KAYNVL 479
+ A NY G L + +A + + P+ + + L
Sbjct: 95 R--KALASDSRNARVLNNY-----GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147
Query: 480 ARGLAQYGSVRDALDCLKYMKKQGVKPN-VITHNMIIEGLCTSGRVKEARAFFD--DDLK 536
Q A + + K + N + + L AR ++D
Sbjct: 148 GLVSLQMKKPAQAKEY--FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205
Query: 537 EKCLENYSAMVDGYCEANHLEEAFQFFMTLSQR 569
+ + + + A + + L +
Sbjct: 206 GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 14/192 (7%)
Query: 378 LCQMGKTSEAIKKFKEFKSMGIFLDQV-CYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP 436
Q G A + + D ++ + ++ + + P
Sbjct: 9 EYQAGDFEAAERHCM--QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNP 64
Query: 437 DVAN-YTTVIDGYILRGKLVDAIGLFKKMREMGHKPD-IKAYNVLARGLAQYGSVRDALD 494
+A Y+ + + Y RG+L +AI ++ + KPD I Y LA L G + A+
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 495 CLKYMKKQGVKPN-VITHNMIIEGLCTSGRVKEARAFFDD--DLKEKCLENYSAMVDGYC 551
Y+ P+ + + L GR++EA+A + + + +S + +
Sbjct: 123 A--YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 552 EANHLEEAFQFF 563
+ A F
Sbjct: 181 AQGEIWLAIHHF 192
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 30/189 (15%), Positives = 68/189 (35%), Gaps = 14/189 (7%)
Query: 377 CLCQMGKTSEAIKKFKEFKSMGIFLDQV-CYNVIMDALCKLGEVEEAVKLFNEMEGRQIV 435
Q + + ++ Y+ + + + G+++EA++ + ++
Sbjct: 42 IHFQCRRLDRSAHFST--LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA--LRLK 97
Query: 436 PDVAN-YTTVIDGYILRGKLVDAIGLFKKMREMGHKPDI-KAYNVLARGLAQYGSVRDAL 493
PD + Y + + G + A+ + + PD+ + L L G + +A
Sbjct: 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAK 155
Query: 494 DCLKYMKKQGVKPN-VITHNMIIEGLCTSGRVKEARAFFDD--DLKEKCLENYSAMVDGY 550
C Y+K +PN + + + G + A F+ L L+ Y + +
Sbjct: 156 AC--YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
Query: 551 CEANHLEEA 559
EA + A
Sbjct: 214 KEARIFDRA 222
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 49/348 (14%), Positives = 95/348 (27%), Gaps = 78/348 (22%)
Query: 377 CLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP 436
L +++ ++ +G L G++ +A+ F+ P
Sbjct: 12 DLGTENLYFQSMADVEKHLELG------------KKLLAAGQLADALSQFH--AAVDGDP 57
Query: 437 DVANYTTVIDGYILR-------GKLVDAIGLFKKMREMGHKPD-IKAYNVLARGLAQYGS 488
D Y R GK A+ K+ ++ K D A L + G
Sbjct: 58 DNYIA------YYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRGHLLLKQGK 109
Query: 489 VRDALDCLK-------------YMKKQGVKPN-VITHNMIIEGLCTSGRVKEARAFFDD- 533
+ +A D K + Q +K + + SG A AF D
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169
Query: 534 -DLKEKCLENYSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNN 592
++ E + + + +A S+ L N E +
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK-------------LKNDNTEAFYK 216
Query: 593 KAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLI 652
+ L + + S + + L L K + + L
Sbjct: 217 IS-TLYYQLGDHEL--SLSEVRE---CLKLDQDHKRCFAH------YKQVKKLNKLIESA 264
Query: 653 HGFCKLNCLREACNIFKDMKLRGIKPD-----VVLYTILCDAYSKINK 695
+ +A + ++ + +P V +C +SK K
Sbjct: 265 EELIRDGRYTDATSKYE--SVMKTEPSIAEYTVRSKERICHCFSKDEK 310
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 27/202 (13%), Positives = 53/202 (26%), Gaps = 41/202 (20%)
Query: 378 LCQMGKTSEAIKKFK---EFKS--------MGIFLDQVCYNVIMDALCKLGEVEEAVKLF 426
+ +A + + L ++A + F
Sbjct: 18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQY------------LKVNDKAQESF 65
Query: 427 NEMEGRQIVPDVA----NYTTVIDGYILR---GKLVDAIGLFKKMREMGHKPDI-KAYNV 478
+ I PD A NY G+ L + +++ F K P A
Sbjct: 66 R--QALSIKPDSAEINNNY-----GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118
Query: 479 LARGLAQYGSVRDALDCLKYMKKQGVKPN-VITHNMIIEGLCTSGRVKEARAFFDDDLKE 537
A+ G A + +P + +G++ +A +F
Sbjct: 119 KGICSAKQGQFGLAEAY--LKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176
Query: 538 KCLENYSAMVDGYCEANHLEEA 559
+ ++ G+ A L A
Sbjct: 177 VEVLQADDLLLGWKIAKALGNA 198
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-04
Identities = 31/193 (16%), Positives = 71/193 (36%), Gaps = 19/193 (9%)
Query: 377 CLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVP 436
+ G EA++ +++ + N+ L + G+++EA+ + E +I P
Sbjct: 18 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYK--EAIRISP 74
Query: 437 DVANYTTVIDGYILR--GKLVDAIGLFKKMREMGHKPD-IKAYNVLARGLAQYGSVRDAL 493
A+ + + G L+ + A+ + + + P A++ LA G++ +A+
Sbjct: 75 TFADAYSNM-GNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAI 131
Query: 494 DCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLENYSAMVDGYCEA 553
Y +KP+ + C + D ++ ++ ++V E
Sbjct: 132 AS--YRTALKLKPD------FPDAYCNLAHCL--QIVCDWTDYDERMKKLVSIVADQLEK 181
Query: 554 NHLEEAFQFFMTL 566
N L L
Sbjct: 182 NRLPSVHPHHSML 194
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 17/125 (13%), Positives = 27/125 (21%), Gaps = 5/125 (4%)
Query: 412 ALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKP 471
G +A++ VA V+ Y + D I K + K
Sbjct: 111 CEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVV--YGAAERWTDVIDQVKSAGKWPDKF 168
Query: 472 -DIKAYNVLARGLAQYGSVRDALDCLKYMKKQGVKPNVITHNMIIEGLCTSGRVKE--AR 528
A A +A L + + E A
Sbjct: 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228
Query: 529 AFFDD 533
A +
Sbjct: 229 ALLEW 233
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 800 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 8e-07
Identities = 37/203 (18%), Positives = 75/203 (36%), Gaps = 6/203 (2%)
Query: 296 PLNAFAYTAVIREFCQNSRLVEAESVLLRMKQLRVTPDKY-VYSALISGYCKCGNIIKAL 354
P A A++ + F + A K + + P+ Y L + + +A+
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIH--HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 355 SLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQVCYNVIMDALC 414
+ + S+ V + + G AI ++ + N + +AL
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN-LANALK 282
Query: 415 KLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIK 474
+ G V EA +N + + + +G + +A+ L++K E+
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLN-NLANIKREQGNIEEAVRLYRKALEV-FPEFAA 340
Query: 475 AYNVLARGLAQYGSVRDALDCLK 497
A++ LA L Q G +++AL K
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYK 363
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 0.001
Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 5/163 (3%)
Query: 267 YSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMK 326
Y + L E D L+ +A + + + + + A R
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 327 QLRVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSE 386
+L+ Y L + + G++ +A + + ++ + + G E
Sbjct: 265 ELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
Query: 387 AIKKFKEFKSMGIFLDQV-CYNVIMDALCKLGEVEEAVKLFNE 428
A++ ++ K++ +F + ++ + L + G+++EA+ + E
Sbjct: 324 AVRLYR--KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 800 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.77 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.47 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.41 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.35 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.86 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.82 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.7 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.12 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.03 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.82 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.8 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.78 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.92 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.45 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.91 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.33 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.6e-25 Score=164.00 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=3.6
Q ss_pred CCCHHHHHHHHH
Q ss_conf 299788999999
Q 003725 753 TNNLVDALIVFD 764 (800)
Q Consensus 753 ~g~~~~A~~~~~ 764 (800)
.|++++|++.++
T Consensus 352 ~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 352 QGKLQEALMHYK 363 (388)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 599999999999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.9e-24 Score=160.80 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999429968999999999989999899999999999981
Q 003725 613 YDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCK 657 (800)
Q Consensus 613 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 657 (800)
+..++.++...|++++|...++++.+..+. +...|..++.+|.+
T Consensus 342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 342 HSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf 999999999859999999999999970999-89999999999998
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.4e-15 Score=106.89 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 89999999999876988-88200898999999519977999999999868999898789999999994299689999999
Q 003725 556 LEEAFQFFMTLSQRGFL-MRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFD 634 (800)
Q Consensus 556 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 634 (800)
..++...+.+....++. .+...+..+...+...|+.++|+..+++.+... +.+...+..++..+...|++++|...++
T Consensus 152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 230 (323)
T d1fcha_ 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYR 230 (323)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 999999999999971301222111036888888887755002111222222-2221110133301221111013788877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999899998999999999999810999999999999998
Q 003725 635 FLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 635 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.+.+..+. +...|..++.+|.+.|++++|+..|++.++
T Consensus 231 ~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 231 RALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 89988432-499999999999987899999999999997
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.7e-11 Score=80.77 Aligned_cols=176 Identities=10% Similarity=0.033 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHCC
Q ss_conf 999999999808982689999999999517871679999998742488724799999999998039-9679999999700
Q 003725 108 TYAAIVRILCYCGRQKKLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSER-MFDQALNVLFQTD 186 (800)
Q Consensus 108 ~~~~~~~~l~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~ 186 (800)
+|..+..++.+.+.+++|..++.++++..|. +..+|......+...| ++++|+..++...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-------------------~~~a~~~r~~~l~~l~~~~~eal~~~~~al 105 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-------------------NYTVWHFRRVLLKSLQKDLHEEMNYITAII 105 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999588669999999999987988-------------------769999999999983767999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHC
Q ss_conf 79996599989999999997499469999999998589987878699999998930994289999999986798868430
Q 003725 187 RPGFVWSKFTCNFFMNQLLKCGEVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARFEEAFDVLNEMNKAGVTLHGHN 266 (800)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 266 (800)
+.+ +-+..+|+.+..++.+.|++++|+..+..+.+.. +.+...|..+...+...|++++|.+.++.+.+.++ .+...
T Consensus 106 ~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a 182 (315)
T d2h6fa1 106 EEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSV 182 (315)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHH
T ss_conf 887-7422689887588885053788998875554321-00468899887788888866789999999998797-44999
Q ss_pred HHHHHHHHHHCCC------HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9999999993499------238999999998699998887799999
Q 003725 267 YSTIIQGLCENGR------LDVGYDLLLKWSENGIPLNAFAYTAVI 306 (800)
Q Consensus 267 ~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li 306 (800)
|+.+...+...+. +++|...+..+.+.. |.+...|..+.
T Consensus 183 ~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~ 227 (315)
T d2h6fa1 183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLK 227 (315)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 9889999987456310235477679999999849-88569999987
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.2e-09 Score=70.78 Aligned_cols=271 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-----H
Q ss_conf 87799999999806997899999999983999979----88899999999925997899999999987599989-----9
Q 003725 403 QVCYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPD----VANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPD-----I 473 (800)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~ 473 (800)
..........+...|++++|..++++........+ ...+..+...+...|++++|...+.+..+.....+ .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999999999988899999999999985486899679999999999999987999999999999999987501148999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----
Q ss_conf 9999999999952999999999999987-------89999999999999999953998899999999974369457----
Q 003725 474 KAYNVLARGLAQYGSVRDALDCLKYMKK-------QGVKPNVITHNMIIEGLCTSGRVKEARAFFDDDLKEKCLEN---- 542 (800)
Q Consensus 474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---- 542 (800)
..+..+...+...|++..+...+..... .........+..+...+...|+++.+...+...........
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988878878888899999889999998675034125678889988878999814566668999998887663002468
Q ss_pred ---HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHC------HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC---H
Q ss_conf ---79999999804998999999999987698888200------89899999951997799999999986899989---8
Q 003725 543 ---YSAMVDGYCEANHLEEAFQFFMTLSQRGFLMRSES------CCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPS---K 610 (800)
Q Consensus 543 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 610 (800)
+......+...+....+...+.+............ +......+...|+.++|...++.........+ .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99998888888764667888899999999998731157269999999999998604489899999999976224666777
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7899999999942996899999999998-----99998999999999999810999999999999998
Q 003725 611 TTYDKVIGALCLAGKIKWAHQVFDFLTR-----HGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 611 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 673 (800)
..+..+..++...|++++|...++.+.. .........+..+...|.+.|++++|.+.+++.++
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88999999998758799999999999988764266747999999999999987899999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.8e-10 Score=73.13 Aligned_cols=124 Identities=6% Similarity=-0.049 Sum_probs=42.8
Q ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 999803996799999997007999659998999999999749-9469999999998589987878699999998930994
Q 003725 167 KAYCSERMFDQALNVLFQTDRPGFVWSKFTCNFFMNQLLKCG-EVDMVLVLYEEMKSVGFSLNQFTYDIVIKALCKLARF 245 (800)
Q Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 245 (800)
..+.+.+.+++|+..++.+++.+ +.+..+|+....++...| ++++|+..++...... +.+..+|..+...+.+.|++
T Consensus 51 ~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~ 128 (315)
T d2h6fa1 51 AVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDP 128 (315)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCH
T ss_conf 99995886699999999999879-88769999999999983767999999999999887-74226898875888850537
Q ss_pred HHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 289999999986798868430999999999349923899999999869
Q 003725 246 EEAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSEN 293 (800)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 293 (800)
++|++.++.+.+.. +.+...|..+...+...|++++|.+.++.+.+.
T Consensus 129 ~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 129 SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88998875554321-004688998877888888667899999999987
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=9.2e-11 Score=77.49 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=10.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999870299788999999998
Q 003725 743 YTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 743 ~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
|..++.+|...|++++|++.|++..
T Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 212 NFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998789999999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=6.2e-10 Score=72.47 Aligned_cols=10 Identities=20% Similarity=0.301 Sum_probs=3.0
Q ss_pred CCHHHHHHHH
Q ss_conf 9946999999
Q 003725 208 GEVDMVLVLY 217 (800)
Q Consensus 208 g~~~~a~~~~ 217 (800)
|+.+.|..+|
T Consensus 113 ~~~~~a~~i~ 122 (308)
T d2onda1 113 MKYEKVHSIY 122 (308)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 3389999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=8.9e-10 Score=71.50 Aligned_cols=27 Identities=11% Similarity=-0.024 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 789999999994299689999999999
Q 003725 611 TTYDKVIGALCLAGKIKWAHQVFDFLT 637 (800)
Q Consensus 611 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 637 (800)
..+...+..+...|+++.|+.+|++..
T Consensus 204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 204 EYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 899999999998698689999999999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=1.9e-11 Score=81.61 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=22.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999994299689999999999899998999999999999810999999999999998
Q 003725 617 IGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 617 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 673 (800)
+..+...++..+|...+......++. +...+..++..|...|++++|.+.+++.++
T Consensus 249 ~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 249 VEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999986699999999988762913-799999999999878999999999999998
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=1.9e-07 Score=57.30 Aligned_cols=259 Identities=9% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-----CCCCCHHHHH
Q ss_conf 89999999999517871679999998742488724799999999998039967999999970079-----9965999899
Q 003725 124 KLESLLRELVQKMNDLNFEVIDLFEALSKEGSNVFYRVSDAMVKAYCSERMFDQALNVLFQTDRP-----GFVWSKFTCN 198 (800)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 198 (800)
++.+++.+..+. ......++.++..-......--...|......|...+++++|...|.++... +......+|+
T Consensus 3 ~~~~~l~~aek~-~~~~~~~~~~~~~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~ 81 (290)
T d1qqea_ 3 DPVELLKRAEKK-GVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYV 81 (290)
T ss_dssp CHHHHHHHHHHH-SSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHH-CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 899999999986-4732469988537764369999999999999999886999999999999999987599889999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCCCCHHC-----H
Q ss_conf 999999974994699999999985899878-----78699999998930-994289999999986798868430-----9
Q 003725 199 FFMNQLLKCGEVDMVLVLYEEMKSVGFSLN-----QFTYDIVIKALCKL-ARFEEAFDVLNEMNKAGVTLHGHN-----Y 267 (800)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~-----~ 267 (800)
.+..+|.+.|+++.|...++.........+ ...+..+...+... |++++|.+.++...+.....+... +
T Consensus 82 ~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~ 161 (290)
T d1qqea_ 82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF 161 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999998088588899999766776532532058999999888676478789999889999999987337603334688
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC----CCHHHH
Q ss_conf 99999999349923899999999869999888------77999999999539957999999999859999----999989
Q 003725 268 STIIQGLCENGRLDVGYDLLLKWSENGIPLNA------FAYTAVIREFCQNSRLVEAESVLLRMKQLRVT----PDKYVY 337 (800)
Q Consensus 268 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~ 337 (800)
..+...+...|++++|...++++......... ..+...+..+...+++..|...++...+.... ......
T Consensus 162 ~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l 241 (290)
T d1qqea_ 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFL 241 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999817399999999999986813324555699999999999998465999999999999759774443999999
Q ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999991--4997899999999977898742779999999996499
Q 003725 338 SALISGYCK--CGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGK 383 (800)
Q Consensus 338 ~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 383 (800)
..++.++-. .+.+++|+..|+.+.+.+......+..+-...-..++
T Consensus 242 ~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~k~~le~~e~ 289 (290)
T d1qqea_ 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQED 289 (290)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 999999983689999999999988754689999999999986015589
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.6e-06 Score=51.65 Aligned_cols=84 Identities=8% Similarity=-0.026 Sum_probs=39.6
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99519977999999999868999898789999999994299689999999999899998999999999999810999999
Q 003725 585 LLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREA 664 (800)
Q Consensus 585 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 664 (800)
+...|+++.|++.+.++ .+++..++..++.++...|++++|...|++..+.++. +...|..+..++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHH
T ss_conf 99877999999999864----8988999999999999858914678789999998552-346678899999854249999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q 003725 665 CNIFKDMKL 673 (800)
Q Consensus 665 ~~~~~~m~~ 673 (800)
...|++.+.
T Consensus 90 ~~~~~kAl~ 98 (192)
T d1hh8a_ 90 IKDLKEALI 98 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999998
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2.9e-06 Score=50.10 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=5.5
Q ss_pred HHHCCCHHHHHHHHHHH
Q ss_conf 98109999999999999
Q 003725 655 FCKLNCLREACNIFKDM 671 (800)
Q Consensus 655 ~~~~g~~~~A~~~~~~m 671 (800)
+.+.|++++|.+.+++.
T Consensus 130 ~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 130 YAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
T ss_conf 99978999999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=7.1e-07 Score=53.83 Aligned_cols=99 Identities=7% Similarity=-0.115 Sum_probs=0.0
Q ss_pred CCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88200898999999519977999999999868999898789999999994299689999999999899998999999999
Q 003725 573 MRSESCCKLLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLI 652 (800)
Q Consensus 573 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 652 (800)
|+...+...+..+...|++++|+..|.+++... +.+...|..++.+|...|+++.|...++.+.+..+. +...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_conf 649999999999998699999999999999859-998999981789874100000124788888871887-389999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999810999999999999998
Q 003725 653 HGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 653 ~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.+|.+.|++++|+..|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
T ss_conf 999987999999999999987
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3.4e-06 Score=49.74 Aligned_cols=88 Identities=11% Similarity=0.009 Sum_probs=39.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99951997799999999986899989878999999999429968999999999989999899999999999981099999
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 663 (800)
.+...|++++|+..|.++++.+ +.+...|..+..+|...|++++|...|+.+.+.++. +...|..++.++...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHH
T ss_conf 9999589999999866021100-011333245678887405421288889999987544-66877999999999499999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q 003725 664 ACNIFKDMKL 673 (800)
Q Consensus 664 A~~~~~~m~~ 673 (800)
|...+++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9998999987
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.9e-06 Score=50.10 Aligned_cols=88 Identities=17% Similarity=0.042 Sum_probs=40.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99951997799999999986899989878999999999429968999999999989999899999999999981099999
Q 003725 584 NLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLRE 663 (800)
Q Consensus 584 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 663 (800)
.+...|++++|+..+.+.++.. +.+...|..+..++...|++++|...+..+.+.++. +...|..++.++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCHHH
T ss_conf 9999699999999999988619-960134300011011000011210013467774022-02677889999998127999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q 003725 664 ACNIFKDMKL 673 (800)
Q Consensus 664 A~~~~~~m~~ 673 (800)
|+..|++.++
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=4.9e-07 Score=54.83 Aligned_cols=230 Identities=10% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 89999999986798868430999999999349923899999999869999888779999999995399579999999998
Q 003725 247 EAFDVLNEMNKAGVTLHGHNYSTIIQGLCENGRLDVGYDLLLKWSENGIPLNAFAYTAVIREFCQNSRLVEAESVLLRMK 326 (800)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 326 (800)
+|.+.|++..+.. +.....+..+..++...+++++| ++++...+ .......-+........+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d---p~~a~~~~~e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD---LEYALDKKVEQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC---HHHHHHHTHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998719-99799995199999997629999---99998749---30199985799999999999999999856
Q ss_pred HC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 59--9999999899999999914997899999999977898742779999999996499789999999998789987887
Q 003725 327 QL--RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYVVSVILKCLCQMGKTSEAIKKFKEFKSMGIFLDQV 404 (800)
Q Consensus 327 ~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 404 (800)
+. ...................+.++.++..+.......+.....+..+...+.+.|+.+.|...+....... ...
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---HHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC---HHH
T ss_conf 16458437999999999999999999999999999878991139999985799875899999999999882788---999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 79999999980699789999999998399997988899999999925997899999999987599989999999999999
Q 003725 405 CYNVIMDALCKLGEVEEAVKLFNEMEGRQIVPDVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLA 484 (800)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 484 (800)
++..+...+...+++++|...|+......+. +...|+.+...+...|+..+|...|.+..... .|-..++..|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH
T ss_conf 9999999999802478999999999987899-65999999999998699999999999998179-997899999999998
Q ss_pred HCCC
Q ss_conf 5299
Q 003725 485 QYGS 488 (800)
Q Consensus 485 ~~g~ 488 (800)
+...
T Consensus 232 ~~~~ 235 (497)
T d1ya0a1 232 KALE 235 (497)
T ss_dssp HHTT
T ss_pred HHHH
T ss_conf 7530
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.30 E-value=5.5e-05 Score=42.37 Aligned_cols=224 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 9888999999999259978999999999875999899999999999995----299999999999998789999999999
Q 003725 437 DVANYTTVIDGYILRGKLVDAIGLFKKMREMGHKPDIKAYNVLARGLAQ----YGSVRDALDCLKYMKKQGVKPNVITHN 512 (800)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 512 (800)
|+..+..+...+...+++++|+..|++..+.| +...+..|...+.. ..+...+...+....+.+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC---CCCHHH
T ss_conf 98999999999998779999999999999789---999999999999809996056999987501222111---111231
Q ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC----CCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHH
Q ss_conf 99999995----39988999999999743694577999999980----49989999999999876988882008989999
Q 003725 513 MIIEGLCT----SGRVKEARAFFDDDLKEKCLENYSAMVDGYCE----ANHLEEAFQFFMTLSQRGFLMRSESCCKLLTN 584 (800)
Q Consensus 513 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (800)
.+...+.. ..+.+.|...++.............+...+.. ......+...+......+ +...+..+...
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~ 151 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHH
T ss_conf 350122432112123677988876554321466887634332378733101577888755520011---10104455556
Q ss_pred HHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 995----19977999999999868999898789999999994----2996899999999998999989999999999998
Q 003725 585 LLI----EGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCL----AGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFC 656 (800)
Q Consensus 585 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 656 (800)
+.. ..+...+...++...+.+ +......+...|.. ..+++.|...|....+.| ++..+..|...|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCHHHHHCCCCCC---CCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHH
T ss_conf 4068874334220001221132322---223322113121267654310344454676653036---8999999999998
Q ss_pred H----CCCHHHHHHHHHHHHHCC
Q ss_conf 1----099999999999999859
Q 003725 657 K----LNCLREACNIFKDMKLRG 675 (800)
Q Consensus 657 ~----~g~~~~A~~~~~~m~~~g 675 (800)
+ ..+.++|.+.|++..+.|
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 39997618999999999999876
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=3.8e-05 Score=43.31 Aligned_cols=61 Identities=7% Similarity=-0.170 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 89999999994299689999999999899998999999999999810999999999999998
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 673 (800)
+|..+..+|.+.|++++|...++.+...++. ++..|..++.+|...|++++|...|++.++
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999988642110110000000100223-103467779999872229999999999997
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=8.3e-06 Score=47.36 Aligned_cols=83 Identities=8% Similarity=-0.045 Sum_probs=29.3
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 95199779999999998689998987899999999942996899999999998999989999999999998109999999
Q 003725 586 LIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREAC 665 (800)
Q Consensus 586 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 665 (800)
...|++++|+..+++.++.. +.+...|..++.++...|++++|...++.+.+..+. +...|..++..|...|++++|.
T Consensus 27 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~A~ 104 (112)
T d1hxia_ 27 LKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAAL 104 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCHHHHH
T ss_conf 98760589999886101121-111001233545641012587741000001111110-0000378999999978999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 003725 666 NIFKD 670 (800)
Q Consensus 666 ~~~~~ 670 (800)
+.+++
T Consensus 105 ~~l~~ 109 (112)
T d1hxia_ 105 ASLRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=5.1e-06 Score=48.63 Aligned_cols=97 Identities=16% Similarity=0.042 Sum_probs=40.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q ss_conf 999999519977999999999868999898789999999994299---6899999999998999989-999999999998
Q 003725 581 LLTNLLIEGYNNKAFKLLDTMLKLDAKPSKTTYDKVIGALCLAGK---IKWAHQVFDFLTRHGLIPD-LISYTMLIHGFC 656 (800)
Q Consensus 581 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 656 (800)
++..+...+++++|.+.|+..+..+ +.+..++..++.++.+.++ +++|..+++.+...++.|+ ...|..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9887369999999999999988329-998999999999999851267899999999999860699319999999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 109999999999999985999789
Q 003725 657 KLNCLREACNIFKDMKLRGIKPDV 680 (800)
Q Consensus 657 ~~g~~~~A~~~~~~m~~~g~~pd~ 680 (800)
+.|++++|.+.|+++++ +.|+.
T Consensus 84 ~~g~~~~A~~~~~~aL~--~~P~~ 105 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ--TEPQN 105 (122)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHHHHH--HCCCC
T ss_conf 97316999999999997--69098
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.12 E-value=0.00011 Score=40.42 Aligned_cols=61 Identities=8% Similarity=-0.150 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 89999999994299689999999999899998999999999999810999999999999998
Q 003725 612 TYDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 612 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 673 (800)
++..++.+|.+.|++++|...++.+.+.++. +...|..++.++...|++++|...|++.++
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9961999999846530111010001000000-012467768999996899999999999998
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=7.4e-06 Score=47.66 Aligned_cols=25 Identities=12% Similarity=-0.006 Sum_probs=9.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999870299788999999998
Q 003725 743 YTVLIARLCYTNNLVDALIVFDEMI 767 (800)
Q Consensus 743 ~~~l~~~~~~~g~~~~A~~~~~~~~ 767 (800)
|..++.+|.+.|++++|++.|++++
T Consensus 75 ~~~Lg~~y~~~g~~~~A~~~~~~aL 99 (122)
T d1nzna_ 75 VFYLAVGNYRLKEYEKALKYVRGLL 99 (122)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999731699999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=4.2e-05 Score=43.08 Aligned_cols=56 Identities=5% Similarity=-0.060 Sum_probs=22.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999429968999999999989999899999999999981099999999999999
Q 003725 616 VIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMK 672 (800)
Q Consensus 616 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 672 (800)
++..+...|++++|...|..+.+.++. +...+..+..+|.+.|++++|+..+++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999859999999999999884964-58999868899988186077899999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.03 E-value=0.0002 Score=38.91 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=32.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 9999999994299689999999999899998999999999999810999999999999998599978988
Q 003725 613 YDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVVL 682 (800)
Q Consensus 613 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~ 682 (800)
|..+..+|.+.|++++|...++.+.+.++. +...|..++.++...|++++|...|++++. +.|+...
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~ 133 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKA 133 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
T ss_conf 984999987762201100022322201310-488999889999882789999999999998--5989899
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.00014 Score=39.85 Aligned_cols=60 Identities=8% Similarity=-0.143 Sum_probs=25.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999994299689999999999899998999999999999810999999999999998
Q 003725 613 YDKVIGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 613 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 673 (800)
+..+..++.+.|++++|...++.+.+..+. +...|..++.+|...|++++|+..|++.++
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 998999998640210136665544310002-236777699999980479999999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.00019 Score=39.12 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=8.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999981099999999999999
Q 003725 650 MLIHGFCKLNCLREACNIFKDMK 672 (800)
Q Consensus 650 ~l~~~~~~~g~~~~A~~~~~~m~ 672 (800)
.+...+...+++++|++.|++.+
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999388999999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.82 E-value=3.5e-05 Score=43.55 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 299689999999999899998999999999999810999999999999998
Q 003725 623 AGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 623 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 673 (800)
.|++++|...++..++..+. +...+..++..|+..|++++|...+++..+
T Consensus 9 ~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88999999999999997899-999999999999987999999999999998
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=0.00014 Score=39.90 Aligned_cols=27 Identities=7% Similarity=-0.203 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999899998999999999999
Q 003725 628 WAHQVFDFLTRHGLIPDLISYTMLIHGF 655 (800)
Q Consensus 628 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 655 (800)
+|...++.+.+.++. +...|..++.+|
T Consensus 59 ~Ai~~~~kAl~l~P~-~~~a~~~lG~~y 85 (145)
T d1zu2a1 59 EAITKFEEALLIDPK-KDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCH-HHHHHHHHHHHH
T ss_conf 899999998873012-058776689999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=0.00052 Score=36.42 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=17.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99994299689999999999899998999999999999810999999999999
Q 003725 618 GALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKD 670 (800)
Q Consensus 618 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 670 (800)
..+...|++++|...++.+....+. +...|..++.+|.+.|+..+|++.|++
T Consensus 75 ~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 75 EAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9998879905789999999984985-199999999999985579999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.78 E-value=3.3e-05 Score=43.68 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99899999999998769888820089899999951997799999999986
Q 003725 554 NHLEEAFQFFMTLSQRGFLMRSESCCKLLTNLLIEGYNNKAFKLLDTMLK 603 (800)
Q Consensus 554 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 603 (800)
|++++|+..+++..+..+. +...+..++..++..|+.++|...++...+
T Consensus 10 G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999999999997899-999999999999987999999999999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=0.00058 Score=36.11 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=4.8
Q ss_pred HHCCCCHHHHHHHH
Q ss_conf 98039967999999
Q 003725 169 YCSERMFDQALNVL 182 (800)
Q Consensus 169 ~~~~~~~~~A~~~~ 182 (800)
|.+.|.++.|..+|
T Consensus 24 c~~~~lye~A~~lY 37 (336)
T d1b89a_ 24 CYDEKMYDAAKLLY 37 (336)
T ss_dssp -----CTTTHHHHH
T ss_pred HHHCCCHHHHHHHH
T ss_conf 98787799999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.92 E-value=0.0058 Score=30.03 Aligned_cols=99 Identities=15% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHCHHHH--HHHHHHCCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Q ss_conf 2008989--9999951997799999999986899989-----------87899999999942996899999999998---
Q 003725 575 SESCCKL--LTNLLIEGYNNKAFKLLDTMLKLDAKPS-----------KTTYDKVIGALCLAGKIKWAHQVFDFLTR--- 638 (800)
Q Consensus 575 ~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 638 (800)
..++..+ +......|++++|+..|++.++...... ...|..+..+|...|++++|...++....
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999999999859999999999999986844201020012102799999999999982863001576643553043
Q ss_pred --CCCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf --99998999-----999999999810999999999999998
Q 003725 639 --HGLIPDLI-----SYTMLIHGFCKLNCLREACNIFKDMKL 673 (800)
Q Consensus 639 --~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 673 (800)
....++.. .+..+..+|...|++++|+..|++.++
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 100245544311278775269999988888888999999998
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.036 Score=25.23 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 88877999999999539957999999999859------999999989999999991499789999999997789874277
Q 003725 297 LNAFAYTAVIREFCQNSRLVEAESVLLRMKQL------RVTPDKYVYSALISGYCKCGNIIKALSLHGEMTSIGIKTNYV 370 (800)
Q Consensus 297 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 370 (800)
.+...+..+...+.+.|++.+|...|++..+. .......++..+..++.+.|++++|+..++++.+..+....+
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a 82 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 56999999999999977999999999999998865301476478999987268886577398887887798869297999
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999996499
Q 003725 371 VSVILKCLCQMGK 383 (800)
Q Consensus 371 ~~~l~~~~~~~g~ 383 (800)
...+.......++
T Consensus 83 ~~Nl~~~~~~l~k 95 (95)
T d1tjca_ 83 NGNLKYFEYIMAK 95 (95)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998674
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.91 E-value=0.26 Score=19.97 Aligned_cols=71 Identities=8% Similarity=-0.069 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 98789999999994299---68999999999989999899999999999981099999999999999859997898
Q 003725 609 SKTTYDKVIGALCLAGK---IKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDMKLRGIKPDVV 681 (800)
Q Consensus 609 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 681 (800)
+..+--....++.++.+ .++|..+++.+...++......+..+.-+|.+.|++++|.+.++.+++ +.|+..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCH
T ss_conf 81019999999982796889999999999998549505999999999999987329999999999982--399849
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.33 E-value=0.39 Score=18.91 Aligned_cols=52 Identities=8% Similarity=-0.125 Sum_probs=26.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999942996899999999998999989999999999998109999999999999
Q 003725 617 IGALCLAGKIKWAHQVFDFLTRHGLIPDLISYTMLIHGFCKLNCLREACNIFKDM 671 (800)
Q Consensus 617 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 671 (800)
+..+...|....|...+..+... .+......+.....+.|.++.|+....+.
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999869946999999999867---99999999999999879846999999998
|