Citrus Sinensis ID: 003731


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------80
MIGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQFMQLQQPFQYLQQSGSQNPLQLKQQQHLLQQLNSQAEDRAQQQQQPQQHMYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY
cccccccccHHHHHHcccccccccccccEEEEcccHHHHHHHccccHHHcccccccccccccccEEEEEEEEccccccccEEEEEEEccccccccccccccccccccccccccEEEEEEEccccccccccccccccHHHccccccccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccHHHHHHHHHccccccEEEEcccccccccccccHHHHHHHHHcccccccEEEEEEccccccEEEEEEEEEEEcccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEcccccHHHHHHHccEEEEEcHHHHHcccccccccccccccccccccccccccccccccc
cccccHHHHHHHHHHHcccccEccccccEEEEcccccHHHHHHHccccHHccccccccccccEEEEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccHHEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEEccEEEcccEEEEEEcccccEEEEEEEcccccccccccEEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHccccEEEEEEEEEEEccccccEEEcEEEEEccccccccccccccEEEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHccccccccccccccEEEEEcccccEEEEccccHHHHHHHHEEEEEEcHHHHHHccccccccccccccccccccccccccccccccc
migdnkclnselwhacagplvslptvgtrvvyfpqghseqvAATTnkevdshipnypnlppqlicqlhnvtmhadvetDEVYAQmtlqplspeeqkdtfvpielgipskqptnyfcktltasdtsthggfsvprraaekvfpsldfslqppaQELIARDLHDVEWKFrhifrgqpkrhlltTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIrrairpptvmpssvlssdSMHIGLLAAAAHAAATnscftvffnpraspsefvipLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMgtitgisdldpvrwsnshwrsvkvgwdestagerqprvslweieplttfpmypslfplrlkrpwhpstssfndnrdetasglnwlrggtgeqglttlnfqslgmfpwmqqrvepsflgndHNQQYQAMLAAGMQSGDPVRQQFMQlqqpfqylqqsgsqnplqLKQQQHLLQQLNSQAEDRAQqqqqpqqhmyHDALQIRTDELLQRqqsnlpspsfskanfmdsstEISVSISPmqnmlgslpegsgnllnfsgagpsmlrqqfpqqslgskyepsqvrdfvhsmslpssyngkdaavgtencntdsqnsVVFGVhidssglllpttvssfttsvdpgvssmplgdsgfhnsmygcmqdssellhnvgqidqltptrTFVKVYksgsvgrsldisRFSSYNELREELGQmfgiegkfedplrsgwqlVFVDRendvlllgddpweaFVSNVWYIKilspedvqkmgeqgvesfspssgqransrgncgrdpvgsley
MIGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELgipskqptNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIfrgqpkrhllTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTItgisdldpvrwsNSHWRSvkvgwdestagerqprvslweieplttFPMYPSLFPLRLKRPWHPstssfndnrdETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQFMQLQQPFQYLQQSGSQNPLQLKQQQHLLQQLNSQAEDRAQQQQQPQQHMYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKvyksgsvgrsldisRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESfspssgqransrgncgrdpvgsley
MIGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLaaaahaaaTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRqqfmqlqqpfqylqqsgsqnplqlkqqqhllqqlnsqAEDRAqqqqqpqqHMYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY
******CLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAA*****VDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTL**********TFVPIELGIPSKQPTNYFCKTLTAS*******F********KVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW****************GLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLG***********************************************************************************************************************************************************************************************NSVVFGVHIDSSGLLLPTTVSSFTT***************FHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILS***************************************
****NKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVA*************YPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPL************************FCKTLTASDTSTHGGFSVPRRAAEKVFPSLD******A**LIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAI**********************AAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTT****************************************************************************************************************************************************************************************************************************************************************************************************************************************************VGRSLDISRFSSYNELREELGQMFGIEGKF**PLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKIL***********************************G****
MIGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQFMQLQQPFQYLQQSGSQNPLQLKQQQHLLQQLN****************MYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQ***********PSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQK*********************************
***DNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLS******T**PI*L**PSKQPTNYFCKTLTASD****GGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRP**************TAS*LN*L**********T***QSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAG********************************************************************************************************************************************************************************************SG*****************************************************PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM********************************
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MIGDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQQYQAMLAAGMQSGDPVRQQFMQLQQPFQYLQQSGSQNPLQxxxxxxxxxxxxxxxxxxxxxQQQPQQHMYHDALQIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSFTTSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query799 2.2.26 [Sep-21-2011]
Q9FGV1811 Auxin response factor 8 O yes no 0.931 0.917 0.699 0.0
Q258Y5816 Auxin response factor 12 N/A no 0.939 0.920 0.638 0.0
Q0J951818 Auxin response factor 12 yes no 0.939 0.918 0.636 0.0
Q9ZTX8 935 Auxin response factor 6 O no no 0.536 0.458 0.804 0.0
Q6H6V4908 Auxin response factor 6 O no no 0.558 0.491 0.795 0.0
A2X1A1908 Auxin response factor 6 O N/A no 0.558 0.491 0.795 0.0
A2YG67917 Auxin response factor 17 N/A no 0.556 0.485 0.785 0.0
Q653U3917 Auxin response factor 17 no no 0.556 0.485 0.785 0.0
Q2QM84899 Auxin response factor 25 no no 0.581 0.517 0.746 0.0
A3B9A0 1055 Auxin response factor 16 no no 0.513 0.388 0.660 1e-150
>sp|Q9FGV1|ARFH_ARATH Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2 Back     alignment and function desciption
 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/803 (69%), Positives = 631/803 (78%), Gaps = 59/803 (7%)

Query: 6   KCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLIC 65
           KCLNSELWHACAGPLVSLP+ G+RVVYFPQGHSEQVAATTNKEVD HIPNYP+LPPQLIC
Sbjct: 17  KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLIC 76

Query: 66  QLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTS 125
           QLHNVTMHADVETDEVYAQMTLQPL+PEEQK+TFVPIELGIPSKQP+NYFCKTLTASDTS
Sbjct: 77  QLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPSNYFCKTLTASDTS 136

Query: 126 THGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWS 185
           THGGFSVPRRAAEKVFP LD++LQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWS
Sbjct: 137 THGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWS 196

Query: 186 VFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAA 245
           VFVSAKRLVAGDSV+FI NEKNQL LGIR A RP T++PSSVLSSDSMHIGLLAAAAHA+
Sbjct: 197 VFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHAS 256

Query: 246 ATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTIT 305
           ATNSCFTVFF+PRAS SEFVI L+KY+KAVFHTR+SVGMRFRMLFETEESSVRRYMGTIT
Sbjct: 257 ATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTIT 316

Query: 306 GISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW 365
           GISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW
Sbjct: 317 GISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW 376

Query: 366 HPSTSSFNDNRDETASGLNWLRGGTGEQGLTT-LNFQSLGMFPWMQQRVEPSFLGNDHNQ 424
           H  TSS  D R +  SGL WLRGG GEQ     LN+ S+G+FPWMQQR++ S +G D+NQ
Sbjct: 377 HAGTSSLPDGRGDLGSGLTWLRGGGGEQQGLLPLNYPSVGLFPWMQQRLDLSQMGTDNNQ 436

Query: 425 QYQAMLAAGMQS---GDPVRQQFMQLQQP-FQYLQQSGSQNP-LQLKQ------QQHLLQ 473
           QYQAMLAAG+Q+   GDP+RQQF+QLQ+P  QYLQQS S N  L L+Q       +HL+ 
Sbjct: 437 QYQAMLAAGLQNIGGGDPLRQQFVQLQEPHHQYLQQSASHNSDLMLQQQQQQQASRHLM- 495

Query: 474 QLNSQAEDRAQQQQQPQQHM----------------------YHDALQIRTDELLQ-RQQ 510
                A+ +   +  PQQ+M                      Y +A +++   L Q +QQ
Sbjct: 496 ----HAQTQIMSENLPQQNMRQEVSNQPAGQQQQLQQPDQNAYLNAFKMQNGHLQQWQQQ 551

Query: 511 SNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQS 570
           S +PSPSF K++F DSS + + + SP          G GNLLNFS  G S+L    P+Q 
Sbjct: 552 SEMPSPSFMKSDFTDSSNKFATTASPA--------SGDGNLLNFSITGQSVL----PEQL 599

Query: 571 LGSKYEPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTV 630
               + P     F   +SLP +Y GK  A+   N     QN  +FGV  D SGL LP+TV
Sbjct: 600 TTEGWSPKASNTFSEPLSLPQAYPGKSLALEPGN----PQNPSLFGVDPD-SGLFLPSTV 654

Query: 631 SSFTTSV-DPGVSSMPLGDSGFHNSMYGCMQDSS-ELLHNVGQIDQLTPTRTFVKVYKSG 688
             F +S  D   S M L DSGF NS+Y CMQD++ ELLH  GQI+    T+ FVKVYKSG
Sbjct: 655 PRFASSSGDAEASPMSLTDSGFQNSLYSCMQDTTHELLHGAGQINSSNQTKNFVKVYKSG 714

Query: 689 SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEA 748
           SVGRSLDISRFSSY+ELREELG+MF IEG  EDPLRSGWQLVFVD+END+LLLGDDPWE+
Sbjct: 715 SVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWES 774

Query: 749 FVSNVWYIKILSPEDVQKMGEQG 771
           FV+NVWYIKILSPEDV +MG+ G
Sbjct: 775 FVNNVWYIKILSPEDVHQMGDHG 797




Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q258Y5|ARFL_ORYSI Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1 Back     alignment and function description
>sp|Q0J951|ARFL_ORYSJ Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function description
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description
>sp|A2YG67|ARFQ_ORYSI Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|Q653U3|ARFQ_ORYSJ Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1 Back     alignment and function description
>sp|Q2QM84|ARFY_ORYSJ Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1 Back     alignment and function description
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query799
359476473846 PREDICTED: auxin response factor 8-like 0.996 0.940 0.775 0.0
224079698827 predicted protein [Populus trichocarpa] 0.968 0.935 0.773 0.0
356500980846 PREDICTED: auxin response factor 8-like 0.994 0.939 0.750 0.0
224134659799 predicted protein [Populus trichocarpa] 0.954 0.954 0.775 0.0
356553218842 PREDICTED: auxin response factor 8-like 0.996 0.945 0.747 0.0
357491655841 Auxin response factor [Medicago truncatu 0.994 0.945 0.742 0.0
356539752843 PREDICTED: auxin response factor 8-like 0.996 0.944 0.738 0.0
255570473826 Auxin response factor, putative [Ricinus 0.972 0.940 0.779 0.0
449506738854 PREDICTED: auxin response factor 8-like 0.991 0.927 0.725 0.0
449462367836 PREDICTED: auxin response factor 8-like 0.991 0.947 0.738 0.0
>gi|359476473|ref|XP_002266678.2| PREDICTED: auxin response factor 8-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1251 bits (3237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/832 (77%), Positives = 709/832 (85%), Gaps = 36/832 (4%)

Query: 3   GDNKCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQ 62
           G+ KCLNSELWHACAGPLVSLPTVG+RVVYFPQGHSEQVAATTNKEVD HIPNYP+LPPQ
Sbjct: 16  GEKKCLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQ 75

Query: 63  LICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTAS 122
           LICQLHNVTMHADVETDEVYAQMTLQPL+P+EQKDTF+P+ELGIPSKQPTNYFCKTLTAS
Sbjct: 76  LICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPVELGIPSKQPTNYFCKTLTAS 135

Query: 123 DTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTT 182
           DTSTHGGFSVPRRAAEKVFP LDFS QPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTT
Sbjct: 136 DTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTT 195

Query: 183 GWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAA 242
           GWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRA RP TVMPSSVLSSDSMHIGLLAAAA
Sbjct: 196 GWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAA 255

Query: 243 HAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMG 302
           HAAATNSCFT+F+NPRASPSEFVIPL+KYVKAVFHTRVSVGMRFRMLFETEESSVRRYMG
Sbjct: 256 HAAATNSCFTIFYNPRASPSEFVIPLSKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMG 315

Query: 303 TITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLK 362
           TITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLK
Sbjct: 316 TITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLK 375

Query: 363 RPWHPSTSSFNDNRDETASGLNWLRGGTGEQGLTTLNFQSLGMFPWMQQRVEPSFLGNDH 422
           RPWHP  SS +D+RDE A+GL WLRG TG+QGL +LNFQ++GMFPW QQR++P+FLGNDH
Sbjct: 376 RPWHPGASSLHDSRDEAANGLMWLRGETGDQGLQSLNFQTVGMFPWTQQRLDPTFLGNDH 435

Query: 423 NQQYQAMLAAGMQ---SGDPVRQQFMQLQQPFQYLQQSGSQN-----PLQLKQQQHLLQQ 474
           NQQYQAMLAAG+Q   SGDP++QQ+MQ QQPFQYLQQ+GS N       Q +  Q  + Q
Sbjct: 436 NQQYQAMLAAGLQNLGSGDPLKQQYMQFQQPFQYLQQTGSNNPLLQQRQQPQVIQQTIPQ 495

Query: 475 LNSQAEDRAQQQQQPQQ----------------HMYHDALQIRTDELLQRQQSNLPSPSF 518
             S A+ +  Q   P+                 H Y ++ QI++D+L QR Q N+PS SF
Sbjct: 496 HMSHAQTQILQDNLPRHLLQQQLNNQQEQPQQQHSYQESFQIQSDQLQQRPQPNVPSLSF 555

Query: 519 SKANFMDSSTEI-SVSISPMQNMLGSL-PEGSGNLLNFS-GAGPSMLRQQFPQQSLGSKY 575
           SKA+F DS+T+  S++ S MQNMLGS+ PEGSGNLLNFS   G SML +Q PQQ   +K+
Sbjct: 556 SKADFPDSNTKFSSITPSSMQNMLGSMCPEGSGNLLNFSRTTGQSMLSEQPPQQPWATKF 615

Query: 576 EPSQVRDFVHSMSLPSSYNGKDAAVGTENCNTDSQNSVVFGVHIDSSGLLLPTTVSSF-T 634
             SQ   F +S SLP  + GKDAAV  ENCN D+QN  +FGV+IDSSGLLLPTTV SF +
Sbjct: 616 THSQFNAFANSTSLP-PFTGKDAAVEPENCNLDAQNHTLFGVNIDSSGLLLPTTVPSFGS 674

Query: 635 TSVDPGVSSMPLGDSGFHNSMYGCMQDSSELLHNVGQIDQLTPTRTFVKVYKSGSVGRSL 694
           +SVD  VSSMPLG SGF  S++GC+QD SELL N GQ+D  TP+RTFVKVYKSGSVGRSL
Sbjct: 675 SSVDADVSSMPLGASGFQGSLFGCVQDPSELLQNAGQVDPPTPSRTFVKVYKSGSVGRSL 734

Query: 695 DISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVW 754
           DI+RFSSY+ELREELGQMFGIEGK E+PLRSGWQLVFVDRENDVLLLGDDPWEAFV+NVW
Sbjct: 735 DITRFSSYHELREELGQMFGIEGKLENPLRSGWQLVFVDRENDVLLLGDDPWEAFVNNVW 794

Query: 755 YIKILSPEDVQKMGEQGVES-FSPSSGQRANSRGNCGRDPV------GSLEY 799
           YIKILSPEDVQKMG+QG+ES FSP+S QR NS G   RD V      GSLEY
Sbjct: 795 YIKILSPEDVQKMGKQGIESGFSPNSAQRMNSSGTDDRDLVSGLPSAGSLEY 846




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079698|ref|XP_002305917.1| predicted protein [Populus trichocarpa] gi|222848881|gb|EEE86428.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356500980|ref|XP_003519308.1| PREDICTED: auxin response factor 8-like [Glycine max] Back     alignment and taxonomy information
>gi|224134659|ref|XP_002327459.1| predicted protein [Populus trichocarpa] gi|222836013|gb|EEE74434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356553218|ref|XP_003544955.1| PREDICTED: auxin response factor 8-like [Glycine max] Back     alignment and taxonomy information
>gi|357491655|ref|XP_003616115.1| Auxin response factor [Medicago truncatula] gi|355517450|gb|AES99073.1| Auxin response factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|356539752|ref|XP_003538358.1| PREDICTED: auxin response factor 8-like [Glycine max] Back     alignment and taxonomy information
>gi|255570473|ref|XP_002526195.1| Auxin response factor, putative [Ricinus communis] gi|223534499|gb|EEF36199.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449506738|ref|XP_004162834.1| PREDICTED: auxin response factor 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449462367|ref|XP_004148912.1| PREDICTED: auxin response factor 8-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query799
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.545 0.537 0.85 4.2e-281
TAIR|locus:2204237 935 ARF6 "auxin response factor 6" 0.548 0.468 0.785 9.8e-244
TAIR|locus:2202205 1086 ARF19 "auxin response factor 1 0.539 0.396 0.591 2.8e-172
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.448 0.396 0.622 9.3e-152
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.510 0.474 0.478 7.6e-118
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.449 0.455 0.514 1.1e-114
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.456 0.548 0.505 4.3e-113
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.435 0.559 0.5 2.7e-109
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.448 0.594 0.5 1.5e-106
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.460 0.576 0.476 5.8e-105
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1996 (707.7 bits), Expect = 4.2e-281, Sum P(2) = 4.2e-281
 Identities = 374/440 (85%), Positives = 400/440 (90%)

Query:     6 KCLNSELWHACAGPLVSLPTVGTRVVYFPQGHSEQVAATTNKEVDSHIPNYPNLPPQLIC 65
             KCLNSELWHACAGPLVSLP+ G+RVVYFPQGHSEQVAATTNKEVD HIPNYP+LPPQLIC
Sbjct:    17 KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLIC 76

Query:    66 QLHNVTMHADVETDEVYAQMTLQPLSPEEQKDTFVPIELGIPSKQPTNYFCKTLTASDTS 125
             QLHNVTMHADVETDEVYAQMTLQPL+PEEQK+TFVPIELGIPSKQP+NYFCKTLTASDTS
Sbjct:    77 QLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPSNYFCKTLTASDTS 136

Query:   126 THGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWS 185
             THGGFSVPRRAAEKVFP LD++LQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWS
Sbjct:   137 THGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWS 196

Query:   186 VFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLXXXXXXX 245
             VFVSAKRLVAGDSV+FI NEKNQL LGIR A RP T++PSSVLSSDSMHIGLL       
Sbjct:   197 VFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHAS 256

Query:   246 XTNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTIT 305
              TNSCFTVFF+PRAS SEFVI L+KY+KAVFHTR+SVGMRFRMLFETEESSVRRYMGTIT
Sbjct:   257 ATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTIT 316

Query:   306 GISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW 365
             GISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW
Sbjct:   317 GISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPW 376

Query:   366 HPSTSSFNDNRDETASGLNWLRGGTGEQ-GLTTLNFQSLGMFPWMQQRVEPSFLGNDHNQ 424
             H  TSS  D R +  SGL WLRGG GEQ GL  LN+ S+G+FPWMQQR++ S +G D+NQ
Sbjct:   377 HAGTSSLPDGRGDLGSGLTWLRGGGGEQQGLLPLNYPSVGLFPWMQQRLDLSQMGTDNNQ 436

Query:   425 QYQAMLAAGMQS---GDPVR 441
             QYQAMLAAG+Q+   GDP+R
Sbjct:   437 QYQAMLAAGLQNIGGGDPLR 456


GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0046983 "protein dimerization activity" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009908 "flower development" evidence=IGI
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009886 "post-embryonic morphogenesis" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
GO:0048507 "meristem development" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q258Y5ARFL_ORYSINo assigned EC number0.63820.93990.9203N/Ano
Q0J951ARFL_ORYSJNo assigned EC number0.63670.93990.9180yesno
Q9FGV1ARFH_ARATHNo assigned EC number0.69980.93110.9173yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query799
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 1e-42
pfam0236297 pfam02362, B3, B3 DNA binding domain 5e-26
smart0101996 smart01019, B3, B3 DNA binding domain 2e-24
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 5e-20
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 1e-17
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 5e-05
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 4e-04
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 5e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.003
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information
 Score =  148 bits (377), Expect = 1e-42
 Identities = 55/84 (65%), Positives = 69/84 (82%), Gaps = 1/84 (1%)

Query: 241 AAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRY 300
           AAHAA+T S F VF+NPRAS SEFV+P  KY+KA+ +   SVGMRF+M FETE+SS RR+
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNN-PFSVGMRFKMRFETEDSSERRF 59

Query: 301 MGTITGISDLDPVRWSNSHWRSVK 324
            GTI+G+SDLDP+RW NS WRS++
Sbjct: 60  SGTISGVSDLDPIRWPNSKWRSLQ 83


A conserved region of auxin-responsive transcription factors. Length = 83

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 799
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.69
KOG06441113 consensus Uncharacterized conserved protein, conta 99.28
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.44
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.72
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 96.91
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 96.08
cd0599281 PB1 The PB1 domain is a modular domain mediating s 95.72
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 95.35
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 94.97
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 94.82
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 94.7
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 90.82
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 88.58
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 87.61
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 87.49
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 84.3
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 83.8
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information
Probab=100.00  E-value=2.2e-35  Score=261.09  Aligned_cols=83  Identities=65%  Similarity=1.048  Sum_probs=81.2

Q ss_pred             HHHHHhcCCeEEEEEecCCCCCcceechhHHHHhhhcCCCccccEEEEeeeccCcccceeeEEEEEeecCCCCCCCCCCc
Q 003731          241 AAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHW  320 (799)
Q Consensus       241 A~~aa~~~~~F~V~Y~Pras~sEFvVp~~ky~~a~~~~~w~~GmRFkM~fe~Eds~~~~~~GTI~gv~d~Dp~rWp~S~W  320 (799)
                      |+|||+++++|+|+||||++++|||||++||++|++ ++|++||||||+||+||+++++|+|||+||+|+||+|||+|+|
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~-~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~W   79 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALN-HPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKW   79 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhc-CCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCc
Confidence            689999999999999999999999999999999998 6999999999999999999999999999999999999999999


Q ss_pred             ccee
Q 003731          321 RSVK  324 (799)
Q Consensus       321 R~Lk  324 (799)
                      ||||
T Consensus        80 R~Lq   83 (83)
T PF06507_consen   80 RMLQ   83 (83)
T ss_pred             ccCc
Confidence            9997



The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query799
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 7e-07
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure

Iteration: 1

Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 43/87 (49%) Query: 115 FCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQ 174 F K +T SD +P+ AEK FP ++ L D++ W+FR+ + Sbjct: 14 FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 73 Query: 175 PKRHLLTTGWSVFVSAKRLVAGDSVLF 201 + ++LT GWS FV K L AGD V F Sbjct: 74 SQSYVLTKGWSRFVKEKNLRAGDVVSF 100

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query799
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 5e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  148 bits (374), Expect = 5e-42
 Identities = 37/126 (29%), Positives = 55/126 (43%)

Query: 105 GIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVE 164
           G   +     F K +T SD        +P+  AEK FP    ++      L   D++   
Sbjct: 4   GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKV 63

Query: 165 WKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPPTVMP 224
           W+FR+ +    + ++LT GWS FV  K L AGD V F  +      L I    R  + + 
Sbjct: 64  WRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLD 123

Query: 225 SSVLSS 230
           +S  SS
Sbjct: 124 ASGPSS 129


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 799
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 2e-33
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-22
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 1e-10
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 Score =  122 bits (307), Expect = 2e-33
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 109 KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFR 168
           +     F K +T SD        +P+  AEK FP    ++      L   D++   W+FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 169 HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIW--NEKNQLLLGIRRA 216
           + +    + ++LT GWS FV  K L AGD V F     +  QL +G +  
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSR 110


>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query799
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.93
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.86
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.3
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.35
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 92.06
d1oeyj_105 Neutrophil cytosol factor 4 (p40phox component of 87.04
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93  E-value=8.1e-26  Score=184.97  Aligned_cols=109  Identities=30%  Similarity=0.476  Sum_probs=102.4

Q ss_pred             CCEEEEEECCCCCCCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf             83018985474779988922550424743099998899999708999746997389899980899702642462002013
Q 003731          111 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSA  190 (799)
Q Consensus       111 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~FV~~  190 (799)
                      ...+|.|+||+|||+++|||+||+++|+.|||+++....++++.+.+.|.+|++|.|+|+||++.++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf             76479999111200898889977899997389543456777079999959999999999998899834774577998887


Q ss_pred             CCCCCCCEEEEEEC--CCCCEEEEEEECCCC
Q ss_conf             58777988999982--588389989835899
Q 003731          191 KRLVAGDSVLFIWN--EKNQLLLGIRRAIRP  219 (799)
Q Consensus       191 K~L~aGD~VvF~R~--~~g~L~vGIRRa~r~  219 (799)
                      ++|++||.|+|+++  ++++++|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             4999799999999818998899999999999



>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure