Citrus Sinensis ID: 003749
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 798 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WMY5 | 952 | Pentatricopeptide repeat- | yes | no | 0.934 | 0.783 | 0.690 | 0.0 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.581 | 0.734 | 0.252 | 1e-55 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.621 | 0.657 | 0.268 | 1e-55 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.575 | 0.506 | 0.255 | 1e-53 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.568 | 0.621 | 0.292 | 2e-53 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.624 | 0.791 | 0.25 | 5e-53 | |
| Q9FMQ1 | 816 | Pentatricopeptide repeat- | no | no | 0.537 | 0.525 | 0.264 | 1e-52 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.624 | 0.890 | 0.238 | 2e-52 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.624 | 0.785 | 0.234 | 4e-52 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.561 | 0.599 | 0.280 | 4e-52 |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/801 (69%), Positives = 649/801 (81%), Gaps = 55/801 (6%)
Query: 1 MDN---ILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPH-NLHRPP 56
MDN +LSLSAPHFP++ L H P S+SFSLKQPPP P PPE +L RP
Sbjct: 1 MDNGGSVLSLSAPHFPYSATILRRHSP----VASISFSLKQPPPQPPEPPESPPDLRRPE 56
Query: 57 KSSRPT------------RSKIPKNPFKNLLNSATTHVPSPPSHS------------LSA 92
KS + ++ + NP K L N ++ SP S L++
Sbjct: 57 KSIGSSSSSSSPSPIPSPKTPLKINPLKGLTNRSSV---SPLVQSEVSSKVSSFGSSLAS 113
Query: 93 KLRLSSKLSPPPPPPPPPPPAEQLQ-EPQSQGNDEIPDAENRSPSSSLATSQEETEFRQE 151
KLRLSSKLSPPPPPPPPPP E Q + + + + P+ E R+P + EFRQE
Sbjct: 114 KLRLSSKLSPPPPPPPPPPVEETTQFRDEFRSDTKPPEEETRNP---------QQEFRQE 164
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
GKIFVGNLP WIKK EFFRQFGPI+NVILIKG++ EKN GFGF+IY AAEKSAM
Sbjct: 165 GKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIY---AAEKSAM 221
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEE-----FRSTWHKEREWH 266
KAVEFDGVEFHGR+LTVKLDDG+RLK KAE R RWV GEE +S+WH+ERE
Sbjct: 222 KAVEFDGVEFHGRILTVKLDDGKRLKTKAEQRVRWV--EEGEEDTKMSNKSSWHQEREGS 279
Query: 267 RREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARG 326
R+ ++ ++T +NWQAV+SAFE+I KPSR EFGLMV +Y RRGDMHRAR+TFE MRARG
Sbjct: 280 RKSLQRILDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARG 339
Query: 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386
I PT +YT+LIHAYAVGRDM+EALSCVRKMKEEGIEMSLVTYS+IVGGF+K G+AEAAD
Sbjct: 340 ITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAAD 399
Query: 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446
+WF+EAK H TLNA IYG IIYA CQT NMERAEALVR+MEEEGIDAPI IYH MMDGY
Sbjct: 400 YWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGY 459
Query: 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506
T++ +E+K L+VF+RLKECGF+P++++YGCLINLYTK+GK+SKALEVS+VMK G+KHN+
Sbjct: 460 TMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNL 519
Query: 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKE 566
KTYSM+INGF+KLKDWAN FAVFED++++G+KPDV+LYNNII AFCGMGNMDRAI VKE
Sbjct: 520 KTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKE 579
Query: 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626
MQK RHRPT+RTFMPIIHG+A++G+M+R+LE+FDMMRR GC+PTVHTFN LI GLVEKRQ
Sbjct: 580 MQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ 639
Query: 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686
MEKA+EILDEMTLAG+S NEHTYT IM GYAS+GDTGKAFEYFT+L+NEGL++D+FTYEA
Sbjct: 640 MEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA 699
Query: 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746
LLKACCKSGRMQSALAVTKEMSA+ IPRN+FVYNILIDGWARRGDVWEAADL+QQMK+EG
Sbjct: 700 LLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEG 759
Query: 747 VQPDVHTYTSFINACSKAGDM 767
V+PD+HTYTSFI+ACSKAGDM
Sbjct: 760 VKPDIHTYTSFISACSKAGDM 780
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May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/468 (25%), Positives = 231/468 (49%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358
+ + +N + RR + A M G EP + ++L++ Y + + +A++ V +M
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 180
Query: 359 EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME 418
E G + T++ ++ G A A ++ +R + + YG ++ C+ +++
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDID 240
Query: 419 RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478
A +L++ ME+ I+A + IY+ ++DG + + L +F + G P + +Y LI
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI 300
Query: 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538
+ G+ S A + M I N+ T+S LI+ F+K +++++++ +
Sbjct: 301 SCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 360
Query: 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI 598
PD+ Y+++I FC +D A H+ + M + P T+ +I GF +A ++ +E+
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL 420
Query: 599 FDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658
F M + G + T+ LI G + R + A + +M G+ PN TY ++ G
Sbjct: 421 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCK 480
Query: 659 LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFV 718
G KA F L+ +E D++TY +++ CK+G+++ + +S + + N
Sbjct: 481 NGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIA 540
Query: 719 YNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGD 766
YN +I G+ R+G EA L+++MK++G P+ TY + I A + GD
Sbjct: 541 YNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/503 (26%), Positives = 256/503 (50%), Gaps = 7/503 (1%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
KP F +++ R + A E+M + G+ P +T ++ Y D++ AL
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-NAIIYGNIIYAQ 411
+M E G S V+ ++IV GF K G E A ++ +E + + + ++
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI 471
C+ +++ A ++ M +EG D + Y+ ++ G +G ++ + V +++ SP+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNT 365
Query: 472 ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531
++Y LI+ K +V +A E+++V+ S GI ++ T++ LI G ++ +FE+
Sbjct: 366 VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEE 425
Query: 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGE 591
+ G +PD YN +I + C G +D A++++K+M+ + T+ +I GF +A +
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485
Query: 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651
+ A EIFD M G T+N LI GL + R++E A +++D+M + G P+++TY +
Sbjct: 486 TREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNS 545
Query: 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711
++ + GD KA + + + G E D+ TY L+ CK+GR++ A + + + +
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605
Query: 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQM-KQEGVQPDVHTY-TSFINACSKAGDMQ- 768
I YN +I G R+ EA +L ++M +Q PD +Y F C+ G ++
Sbjct: 606 INLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIRE 665
Query: 769 -VRFSIPMLTKFYL--FSFIWFL 788
V F + +L K ++ FS ++ L
Sbjct: 666 AVDFLVELLEKGFVPEFSSLYML 688
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/494 (25%), Positives = 237/494 (47%), Gaps = 35/494 (7%)
Query: 315 ARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374
A + F +M + GI P +++YT +I + +D+ A + M+ G ++++V Y++++
Sbjct: 211 AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLID 270
Query: 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR------------------- 415
G K A ++ + + + Y ++Y C+ +
Sbjct: 271 GLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSP 330
Query: 416 ----------------NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459
+E A LV+ + + G+ + +Y+ ++D + ++F
Sbjct: 331 SEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLF 390
Query: 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL 519
+R+ + G P+ ++Y LI+++ + GK+ AL M +G+K ++ Y+ LING K
Sbjct: 391 DRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKF 450
Query: 520 KDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTF 579
D + +++ L+P VV Y +++ +C G +++A+ + EM + P+ TF
Sbjct: 451 GDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTF 510
Query: 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL 639
++ G RAG ++ A+++F+ M P T+N +I G E+ M KA E L EMT
Sbjct: 511 TTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTE 570
Query: 640 AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699
GI P+ ++Y ++HG G +A + L EL+ Y LL C+ G+++
Sbjct: 571 KGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEE 630
Query: 700 ALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759
AL+V +EM + + + Y +LIDG + D L+++M G++PD YTS I+
Sbjct: 631 ALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMID 690
Query: 760 ACSKAGDMQVRFSI 773
A SK GD + F I
Sbjct: 691 AKSKTGDFKEAFGI 704
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 231/462 (50%), Gaps = 8/462 (1%)
Query: 310 GDMHR-ARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT 368
G+ H+ A F +M +R I PTL + ++ A+ +++ ALS +R M + G + V
Sbjct: 195 GNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVI 254
Query: 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428
Y ++ +K A EE +A + ++I C+ + A +V M
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 314
Query: 429 EEGIDAPIDI-YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487
G AP DI Y +M+G IG + +F R+ + P I+ + LI+ + G++
Sbjct: 315 IRGF-APDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRL 369
Query: 488 SKALEV-SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN 546
A V S ++ S GI ++ TY+ LI G+ K V D+ G KP+V Y
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTI 429
Query: 547 IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606
++ FC +G +D A +++ EM + +P + F +I F + + A+EIF M R G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
Query: 607 CIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666
C P V+TFN+LI GL E +++ A+ +L +M G+ N TY T+++ + G+ +A
Sbjct: 490 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEAR 549
Query: 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726
+ ++ +G LD TY +L+K C++G + A ++ ++M + NILI+G
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGL 609
Query: 727 ARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQ 768
R G V EA + ++M G PD+ T+ S IN +AG ++
Sbjct: 610 CRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIE 651
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 126/504 (25%), Positives = 243/504 (48%), Gaps = 6/504 (1%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKKP----SRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + V+S ER++ + +++N + RR + A M
Sbjct: 82 EFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKM 141
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP + ++L++ Y G+ + EA++ V +M + + VT++ ++ G A
Sbjct: 142 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKA 201
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + R + YG ++ C+ +++ A +L++ ME+ I+A + IY +
Sbjct: 202 SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTI 261
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D N L +F + G P++++Y LI G+ S A + M I
Sbjct: 262 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T+S LI+ F+K +++++++ + PD+ Y+++I FC +D A H
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF +A ++ +E+F M + G + T+N LI GL
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ + A +I +M G+ P+ TY+ ++ G G KA F L+ +E D++
Sbjct: 442 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
TY +++ CK+G+++ + +S + + N +Y +I G+ R+G EA L ++M
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 743 KQEGVQPDVHTYTSFINACSKAGD 766
K++G P+ TY + I A + GD
Sbjct: 562 KEDGTLPNSGTYNTLIRARLRDGD 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/473 (26%), Positives = 232/473 (49%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
+PS+ +G + + D+ + + F M+ I P++ +Y LI G+ M +A
Sbjct: 176 RPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQ 235
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412
+M + SL+TY+ ++ G+ K GN E + E K H + I + ++
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Query: 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSII 472
+ +E AE ++++M++ G + ++ DGY+ E L V+E + G +
Sbjct: 296 KAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAY 355
Query: 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532
+ L+N K GK+ KA E+ + G+ N Y+ +I+G+ + D E +
Sbjct: 356 TCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAM 415
Query: 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM 592
+ G+KPD + YN +IR FC +G M+ A V +M+ + P+ T+ +I G+ R E
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475
Query: 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652
+ +I M +G +P V ++ LI L + ++ +A + +M G+SP Y +
Sbjct: 476 DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNML 535
Query: 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712
+ G S G AF + ++ +G+EL++ TY L+ +G++ A + E+S + +
Sbjct: 536 IDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGL 595
Query: 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765
+ F YN LI G+ G+V L ++MK+ G++P + TY I+ C+K G
Sbjct: 596 KPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG 648
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/504 (23%), Positives = 248/504 (49%), Gaps = 6/504 (1%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKKP----SRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + + V+S E++++ + + +++N + RR + A M
Sbjct: 12 EFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKM 71
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP++ ++L++ Y G+ + +A++ V +M E G +T++ ++ G A
Sbjct: 72 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 131
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + +R N + YG ++ C+ +++ A L+ ME I+A + I++ +
Sbjct: 132 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D + + L +F+ ++ G P++++Y LI+ G+ S A ++ M I
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T++ LI+ F+K + + +D+++ + PD+ YN++I FC +D+A
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 311
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF ++ ++ E+F M G + T+ LI GL
Sbjct: 312 MFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 371
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ A ++ +M G+ P+ TY+ ++ G + G KA E F ++ ++LD++
Sbjct: 372 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 431
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
Y +++ CK+G++ + +S + + N YN +I G + + EA L+++M
Sbjct: 432 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 491
Query: 743 KQEGVQPDVHTYTSFINACSKAGD 766
K++G PD TY + I A + GD
Sbjct: 492 KEDGPLPDSGTYNTLIRAHLRDGD 515
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/504 (23%), Positives = 247/504 (49%), Gaps = 6/504 (1%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKKP----SRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + + V+S E++++ + +++N + RR + A M
Sbjct: 87 EFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKM 146
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP++ ++L++ Y G+ + +A++ V +M E G +T++ ++ G A
Sbjct: 147 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + +R N + YG ++ C+ + + A L+ ME I+A + I++ +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D + + L +F+ ++ G P++++Y LI+ G+ S A ++ M I
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T++ LI+ F+K + +++D+++ + PD+ YN+++ FC +D+A
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF ++ ++ E+F M G + T+ LI GL
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ A ++ +M G+ P+ TY+ ++ G + G KA E F ++ ++LD++
Sbjct: 447 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
Y +++ CK+G++ + +S + + N YN +I G + + EA L+++M
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566
Query: 743 KQEGVQPDVHTYTSFINACSKAGD 766
K++G P+ TY + I A + GD
Sbjct: 567 KEDGPLPNSGTYNTLIRAHLRDGD 590
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 130/463 (28%), Positives = 231/463 (49%), Gaps = 15/463 (3%)
Query: 319 FENMRARGIEPTLHVYTNLI---HAYAVGRDM------EEALSCVRKMKEEGIEMSLVTY 369
F +R + I TLH+ T A + D+ +E S V K +E ++ T
Sbjct: 77 FFTLRCKCI--TLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTS 134
Query: 370 SI---IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT-RNMERAEALVR 425
S+ +V ++++ + A A+ + Y ++ A ++ RN+ AE + +
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194
Query: 426 DMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG 485
+M E + + Y++++ G+ GN + L +F++++ G P++++Y LI+ Y K+
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254
Query: 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYN 545
K+ ++ + M G++ N+ +Y+++ING + V V ++ R G D V YN
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYN 314
Query: 546 NIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605
+I+ +C GN +A+ + EM + P+ T+ +IH +AG M RA+E D MR
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR 374
Query: 606 GCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665
G P T+ L+ G +K M +A +L EM G SP+ TY +++G+ G A
Sbjct: 375 GLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDA 434
Query: 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725
++ +GL DV +Y +L C+S + AL V +EM + I +T Y+ LI G
Sbjct: 435 IAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQG 494
Query: 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQ 768
+ + EA DL ++M + G+ PD TYT+ INA GD++
Sbjct: 495 FCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLE 537
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 798 | ||||||
| 224113413 | 941 | predicted protein [Populus trichocarpa] | 0.934 | 0.792 | 0.764 | 0.0 | |
| 225464410 | 929 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.805 | 0.759 | 0.0 | |
| 255549482 | 924 | pentatricopeptide repeat-containing prot | 0.859 | 0.742 | 0.802 | 0.0 | |
| 449435168 | 962 | PREDICTED: pentatricopeptide repeat-cont | 0.883 | 0.732 | 0.755 | 0.0 | |
| 296084463 | 927 | unnamed protein product [Vitis vinifera] | 0.912 | 0.785 | 0.737 | 0.0 | |
| 356577532 | 932 | PREDICTED: pentatricopeptide repeat-cont | 0.928 | 0.795 | 0.695 | 0.0 | |
| 224097576 | 877 | predicted protein [Populus trichocarpa] | 0.870 | 0.792 | 0.738 | 0.0 | |
| 356533316 | 918 | PREDICTED: pentatricopeptide repeat-cont | 0.914 | 0.795 | 0.701 | 0.0 | |
| 297806463 | 942 | pentatricopeptide repeat-containing prot | 0.938 | 0.795 | 0.689 | 0.0 | |
| 42567647 | 952 | pentatricopeptide (PPR) repeat-containin | 0.934 | 0.783 | 0.690 | 0.0 |
| >gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa] gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1188 bits (3073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 590/772 (76%), Positives = 655/772 (84%), Gaps = 26/772 (3%)
Query: 8 SAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPK---------S 58
+ P FPH+P + TT++SFSLK PPP P P ++ RP +
Sbjct: 8 TTPRFPHSPTPFSS-----IATTTISFSLKPTPPPPPEPTNSSSIRRPKSLTPTPSTSST 62
Query: 59 SRPTRSKIPKNPFKNLLNSATTHVPSPPSH---SLSAKLRLSSKLSPPPPPPPPPPPAEQ 115
PT K PKNP K LLN + V S + SLS KLRLSSKLSPPPPPPPPPPP E
Sbjct: 63 PTPTTPKFPKNPLKTLLNPSKPSVTSTTTTNPLSLSTKLRLSSKLSPPPPPPPPPPPLEI 122
Query: 116 LQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQF 175
LQ P+++ ++ EN +P EF Q GKIF+GNLPNWIKKH + EFF QF
Sbjct: 123 LQTPEAETQEKTQKIENEAP---------RIEFYQNGKIFIGNLPNWIKKHELSEFFSQF 173
Query: 176 GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
GPIKNVILI+ +N E+N GFGF+IYDGP A KSAMKA EFDG+EFHGRVLTVKLDDGRR
Sbjct: 174 GPIKNVILIQSHNETERNAGFGFIIYDGPKAGKSAMKAEEFDGMEFHGRVLTVKLDDGRR 233
Query: 236 LKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPS 295
LK KAE R WV G +G+++RS WH+ERE + FRK ++TQPENWQAVVSAFERIKKPS
Sbjct: 234 LKAKAEERKNWVYGEDGKDYRSKWHEEREGSTKAFRKVLDTQPENWQAVVSAFERIKKPS 293
Query: 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVR 355
RREFGLMV YYARRGDMHRARQTFE+MRARGI+P+ HVYT+LIHAYAVGRDMEEALSCVR
Sbjct: 294 RREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVR 353
Query: 356 KMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415
KM EEGIEMSLVTYSI+VGGFAK GNAEAAD WF++AKERH LNA IYGNIIYA CQ
Sbjct: 354 KMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQAC 413
Query: 416 NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYG 475
NM+RAEALVR+MEEEGIDAP+DIYH MMDGYT+I NEEKCLIVF+RLKECGF+PS+I+YG
Sbjct: 414 NMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYG 473
Query: 476 CLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535
CLIN+YTKIGKVSKALEVSK+MKS GIKHNMKTYSMLINGFLKLKDW N FAVFEDV++D
Sbjct: 474 CLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKD 533
Query: 536 GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595
GLKPDVVLYNNII+AFCGMGNMDRAIH+VKEMQKER RPTSRTFMPIIHGFARAGEM+RA
Sbjct: 534 GLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRA 593
Query: 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655
LEIFDMMRRSGCIPTVHTFNAL+LGLVEKR+MEKA+EILDEM LAG+SP+EHTYTTIMHG
Sbjct: 594 LEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHG 653
Query: 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN 715
YA+LGDTGKAFEYFTK+RNEGL+LDVFTYEALLKACCKSGRMQSALAVT+EM+AQKIPRN
Sbjct: 654 YAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRN 713
Query: 716 TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767
TFVYNILIDGWARRGD+WEAADLMQQM QEGVQPD+HTYTSFINAC KAGDM
Sbjct: 714 TFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDM 765
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1180 bits (3053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/778 (75%), Positives = 664/778 (85%), Gaps = 30/778 (3%)
Query: 3 NILSLSAPHFPHT---PATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLH---RPP 56
+I SL++P PHT A++L K H TT+ FS K SP P EP N R P
Sbjct: 2 DIFSLASPLCPHTTTFSASILAGKTH--PTTAFCFSSKT----SPEPDEPSNSSGHLRRP 55
Query: 57 KSSRPTRSKIP------KNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPP 110
K+ +P+ + P KNP KN++N + P+ P++ L+ KL LSS+LSPPPPPPP
Sbjct: 56 KTLKPSLNPTPPSPKTTKNPLKNIVNPTIS--PTNPAN-LTNKLWLSSQLSPPPPPPPTR 112
Query: 111 PPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVME 170
PP E + ++E+ + N S + E EFRQEGKIFVGNLPNW+KK+ V E
Sbjct: 113 PPQETID------DNEVTVSSNLDNLCSDGSP--EIEFRQEGKIFVGNLPNWVKKNEVSE 164
Query: 171 FFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
FFRQFGPI+NVILIKG+N+ ++N GFGFVIY GP A SAM+AVEFDGVEFHGRVLTVKL
Sbjct: 165 FFRQFGPIENVILIKGHNDNQRNAGFGFVIYGGPMASGSAMRAVEFDGVEFHGRVLTVKL 224
Query: 231 DDGRRLKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFER 290
DDGRRL+ ++E RARWV G+ G + RS WH+ERE R++FRK +ET+PENWQAVV AFER
Sbjct: 225 DDGRRLRGRSEERARWVQGH-GVDQRSKWHEERESSRKDFRKVLETEPENWQAVVQAFER 283
Query: 291 IKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEA 350
IKKPSR+EFGLMV YYARRGDMH AR TFE+MRARGIEPT HVYT+LIHAYAVGRDMEEA
Sbjct: 284 IKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEA 343
Query: 351 LSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410
LSCVRKMKEEGIEMSLVTYSI+VGGFAK+ +AEAADHWF+EAKERH TLNAIIYGNIIYA
Sbjct: 344 LSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYA 403
Query: 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS 470
CQ NM +AEALVR+MEEEGIDAPIDIYH MMDGYTIIGNEEKCLIVF+RLKECGF+PS
Sbjct: 404 HCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPS 463
Query: 471 IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530
+ISYGCLINLY KIGKVSKALEVSK+M+ +GIKHNMKTYSMLINGF++LKDWAN FAVFE
Sbjct: 464 VISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFE 523
Query: 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590
DV++DGLKPDVVLYNNIIRAFCGMGNMDRAI VKEMQKERHRPT+RTFMPIIHGFAR+G
Sbjct: 524 DVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSG 583
Query: 591 EMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT 650
+M+RALEIFDMMR SGCIPTVHTFNALILGLVEK QMEKA+EILDEM+LAGISPNEHTYT
Sbjct: 584 DMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYT 643
Query: 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710
TIMHGYASLGDTGKAFEYFTKL+ EGLELDV+TYEALLKACCKSGRMQSALAVT+EMS+Q
Sbjct: 644 TIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQ 703
Query: 711 KIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQ 768
KIPRNTFVYNILIDGWARRGDVWEAA+LMQQMKQEGVQPD+HTYTSFINAC KAGDMQ
Sbjct: 704 KIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQ 761
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1173 bits (3034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/704 (80%), Positives = 627/704 (89%), Gaps = 18/704 (2%)
Query: 69 NPFKNLLNSATTHVPSPP-----SHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQG 123
NPFK LLN + HVPSPP +HSLS+KLRLS KL P PPPP P PP + ++Q
Sbjct: 87 NPFKILLNQPS-HVPSPPPQTTNTHSLSSKLRLSGKLFPLPPPPLPLPPPPPVPRAKTQ- 144
Query: 124 NDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL 183
D+ + E+ P EFRQEGKIF+GNLPNWIKKH + EFFRQFGPIK VIL
Sbjct: 145 VDKHQENESHKP-----------EFRQEGKIFIGNLPNWIKKHEISEFFRQFGPIKKVIL 193
Query: 184 IKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVR 243
IKGYN E+N GFGFVIYD AEKSA KAVEFDG+EFHGR+LTVKLDDGRRLK KA+ R
Sbjct: 194 IKGYNETERNAGFGFVIYDDKTAEKSATKAVEFDGMEFHGRILTVKLDDGRRLKAKADER 253
Query: 244 ARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMV 303
RWV G +G+++ S WH+ER+ R+ FR+ +ETQPENWQ VVSAFERIKKPSRRE+GLMV
Sbjct: 254 KRWVEGEDGDDYESKWHEERDGSRKAFRRVLETQPENWQDVVSAFERIKKPSRREYGLMV 313
Query: 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE 363
+YYARRGDMHRARQTFE+MRARGIEPT HVYT+LIHAYAVGRDMEEALSC RKMKEEG+E
Sbjct: 314 SYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVE 373
Query: 364 MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423
MSLVTYSIIVGGFAK+GNA+AAD WF+EAK+RH+ +NAIIYGN+IYA CQT NM++AEAL
Sbjct: 374 MSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEAL 433
Query: 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK 483
VR+ME EGIDAPIDIYH MMDGYT++GNEEKCL VFERLKECGF+PS++SYGCLINLY K
Sbjct: 434 VREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAK 493
Query: 484 IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543
+GK+SKALEVSK+M+S+GIKHNMKTYSMLINGFLKLKDWAN FA+FEDV++DGLKPDVVL
Sbjct: 494 VGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVL 553
Query: 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603
YNNIIRAFCGMG MDRAI +VKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL++FDMMR
Sbjct: 554 YNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMR 613
Query: 604 RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTG 663
RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM LAG+SPNEHTYTTIMHGYA+LGDTG
Sbjct: 614 RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTG 673
Query: 664 KAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILI 723
KAFEYFTKLR+EGL+LDV+TYEALLKACCKSGRMQSALAVTKEMSAQ IPRNTFVYNILI
Sbjct: 674 KAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILI 733
Query: 724 DGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767
DGWARRGDVWEAADLMQQMKQ GV+PD+HTYTSFINAC KAGDM
Sbjct: 734 DGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDM 777
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/729 (75%), Positives = 629/729 (86%), Gaps = 24/729 (3%)
Query: 49 PHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVP---------SPPSHSLSAKLRLSSK 99
P L + S + T S++P NP +NL+ SA +VP P SHSLS KL LSSK
Sbjct: 70 PQTL-KTTSSPKRTTSQVPSNPLRNLVGSA--YVPILPPPPPPPPPVSHSLSEKLWLSSK 126
Query: 100 LSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNL 159
LSPP + E + +EI + E+ + SS + E +FRQEGKIFVGNL
Sbjct: 127 LSPP---------PPPISELLEEDRNEIEEIESDNSSSK---GRREVQFRQEGKIFVGNL 174
Query: 160 PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219
PNWIKKH V EFFRQFGP+KNVILIKG+N E+N G+GF+IYDG A+KSA+KAVEFDGV
Sbjct: 175 PNWIKKHEVQEFFRQFGPVKNVILIKGHNAVERNAGYGFIIYDGLTADKSAIKAVEFDGV 234
Query: 220 EFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPE 279
EFHGRVLTVKLDDGRRLK K + RARW+ G++ E+RS WH+ER+ R RK +ET+PE
Sbjct: 235 EFHGRVLTVKLDDGRRLKEKTDERARWMEGDDSVEYRSHWHEERDKARNGLRKVIETEPE 294
Query: 280 NWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIH 339
NWQAVVSAFERIKKPSR+E+GLMVNYY RRGDMHRAR+TFE MRARGIEP+ HVYTNLIH
Sbjct: 295 NWQAVVSAFERIKKPSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIH 354
Query: 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL 399
AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI+V GFAK GNAE+ADHWF+EAKE+H++L
Sbjct: 355 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSL 414
Query: 400 NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459
NAIIYGNIIYA CQ NM++AEALVR+MEEEGIDAPIDIYH MMDGYT++G+E+KCL+VF
Sbjct: 415 NAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVF 474
Query: 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL 519
ER KECG +PS+I+YGCLINLY K+GKVSKALEVSK M+ +GIKHNMKTYSMLINGFLKL
Sbjct: 475 ERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKL 534
Query: 520 KDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTF 579
KDWAN FA+FED+++DG+KPDVVLYNNII AFCGMG MDRA+ VKEMQK+RH+PT+RTF
Sbjct: 535 KDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTF 594
Query: 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL 639
MPIIHGFAR GEMK+AL++FDMMR SGCIPTVHT+NALILGLVEKR+MEKA +ILDEMTL
Sbjct: 595 MPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTL 654
Query: 640 AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699
AG+SPNEHTYTTIMHGYASLGDTGKAF YFTKLR+EGL+LDV+TYEALLKACCKSGRMQS
Sbjct: 655 AGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQS 714
Query: 700 ALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759
ALAVTKEMSAQ IPRNTF+YNILIDGWARRGD+WEAADLMQQMK+EGVQPD+HTYTSFIN
Sbjct: 715 ALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFIN 774
Query: 760 ACSKAGDMQ 768
ACSKAGDMQ
Sbjct: 775 ACSKAGDMQ 783
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1135 bits (2935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/780 (73%), Positives = 647/780 (82%), Gaps = 52/780 (6%)
Query: 1 MDNILSLSAPHFPHT---PATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLH---R 54
M +I SL++P PHT A++L K H TT+ FS K SP P EP N R
Sbjct: 1 MMDIFSLASPLCPHTTTFSASILAGKTH--PTTAFCFSSKT----SPEPDEPSNSSGHLR 54
Query: 55 PPKSSRPTRSKIP------KNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPP 108
PK+ +P+ + P KNP KN++N + P+ P++ L+ KL LSS+LSPPPPPPP
Sbjct: 55 RPKTLKPSLNPTPPSPKTTKNPLKNIVNPTIS--PTNPAN-LTNKLWLSSQLSPPPPPPP 111
Query: 109 PPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLV 168
PP E + + +E+ + N S + E EFRQEGKIFVGNLPNW+KK+ V
Sbjct: 112 TRPPQETIDD------NEVTVSSNLDNLCSDGSP--EIEFRQEGKIFVGNLPNWVKKNEV 163
Query: 169 MEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
EFFRQFGPI+NVILIKG+N+ ++N GFGF FHGRVLTV
Sbjct: 164 SEFFRQFGPIENVILIKGHNDNQRNAGFGF----------------------FHGRVLTV 201
Query: 229 KLDDGRRLKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAF 288
KLDDGRRL+ ++E RARWV G+ G + RS WH+ERE R++FRK +ET+PENWQAVV AF
Sbjct: 202 KLDDGRRLRGRSEERARWVQGH-GVDQRSKWHEERESSRKDFRKVLETEPENWQAVVQAF 260
Query: 289 ERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDME 348
ERIKKPSR+EFGLMV YYARRGDMH AR TFE+MRARGIEPT HVYT+LIHAYAVGRDME
Sbjct: 261 ERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDME 320
Query: 349 EALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408
EALSCVRKMKEEGIEMSLVTYSI+VGGFAK+ +AEAADHWF+EAKERH TLNAIIYGNII
Sbjct: 321 EALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNII 380
Query: 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS 468
YA CQ NM +AEALVR+MEEEGIDAPIDIYH MMDGYTIIGNEEKCLIVF+RLKECGF+
Sbjct: 381 YAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFT 440
Query: 469 PSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAV 528
PS+ISYGCLINLY KIGKVSKALEVSK+M+ +GIKHNMKTYSMLINGF++LKDWAN FAV
Sbjct: 441 PSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAV 500
Query: 529 FEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588
FEDV++DGLKPDVVLYNNIIRAFCGMGNMDRAI VKEMQKERHRPT+RTFMPIIHGFAR
Sbjct: 501 FEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFAR 560
Query: 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHT 648
+G+M+RALEIFDMMR SGCIPTVHTFNALILGLVEK QMEKA+EILDEM+LAGISPNEHT
Sbjct: 561 SGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHT 620
Query: 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708
YTTIMHGYASLGDTGKAFEYFTKL+ EGLELDV+TYEALLKACCKSGRMQSALAVT+EMS
Sbjct: 621 YTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMS 680
Query: 709 AQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQ 768
+QKIPRNTFVYNILIDGWARRGDVWEAA+LMQQMKQEGVQPD+HTYTSFINAC KAGDMQ
Sbjct: 681 SQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQ 740
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1111 bits (2874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/776 (69%), Positives = 630/776 (81%), Gaps = 35/776 (4%)
Query: 5 LSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLK------QPPPPSPTPPEPHNLHRPPKS 58
LS S H T + HHP ++S + + +PP S P RP KS
Sbjct: 4 LSFSTSHLSVPSNTTIFSPKHHPPSSSAATTTTTVSFSLKPPSDSNNSATPR---RPSKS 60
Query: 59 SRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQE 118
+ T + P NP P+P S+ L+ KL L+SKLSPP
Sbjct: 61 LKATPTTPPSNP-----------KPAPISNPLANKLWLTSKLSPP---------PPPPPP 100
Query: 119 PQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPI 178
P + + EI +++ + ++FRQ GKIFVGNLP W+KK V EFFRQFGPI
Sbjct: 101 PPPEIDSEIETETDKASGDGANSDSRNSDFRQPGKIFVGNLPAWVKKPQVAEFFRQFGPI 160
Query: 179 KNVILIKGYNNFEKNVGFGFVIYDG----PAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234
++VILIKG+++ E++ GF FVIYDG A+K+AM+AVEFDGVEFHGRVLTVKLDDG+
Sbjct: 161 RSVILIKGHHDTERSAGFAFVIYDGVESDDEADKAAMRAVEFDGVEFHGRVLTVKLDDGK 220
Query: 235 RLKNKAEVRARWVAGNNGE--EFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIK 292
R++ ++E +ARW+ GN G+ E+ STWH+ER+ R+ F+K +ETQPENWQAVV+AFERIK
Sbjct: 221 RMRERSEEKARWLQGNGGDKGEYPSTWHEERDGSRKSFQKILETQPENWQAVVTAFERIK 280
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
KP+R+E+GLMV YY RRGDMH ARQTFE+MRARGIEP+ HVY++LIHAYAVGRDMEEAL
Sbjct: 281 KPARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALH 340
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412
CVRKMKEEGIEM++VTYSIIVGGFAKMGNA+AADHWFEEAKE+ +LNA+IYG IIYA C
Sbjct: 341 CVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHC 400
Query: 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSII 472
Q NM+RAEALVR+MEE+GIDAPIDIYH MMDGYT+IGNEEKCLIVF+RLKECGF PS+I
Sbjct: 401 QICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVI 460
Query: 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532
SYGCLINLYTK+GKVSKALE+SK+MK SGIKHNMKTYSMLINGFLKLKDWAN F+VFED
Sbjct: 461 SYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDF 520
Query: 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM 592
+DGLKPDVVLYNNII AFCGMGNMDRAI +V++MQKERHRPT+RTF+PIIHGFARAGEM
Sbjct: 521 TKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEM 580
Query: 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652
+RALEIFDMMRRSGCIPTVHT+NALILGLVEKRQM KA+ ILDEM +AG+ PNEHTYTT+
Sbjct: 581 RRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTL 640
Query: 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712
M GYASLGDT KAF+YFT LRNEGLE+DV+TYEALLK+CCKSGRMQSALAVTKEMSA+ I
Sbjct: 641 MQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNI 700
Query: 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQ 768
PRNTFVYNILIDGWARRGDVWEAADLMQQM++EG+ PD+HTYTSFINAC KAGDMQ
Sbjct: 701 PRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQ 756
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa] gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/756 (73%), Positives = 624/756 (82%), Gaps = 61/756 (8%)
Query: 31 SLSFSLKQPPPPSPTPPEPHNLHRPPK-------------SSRPTRSKIPKNPFKNLLNS 77
S+SFSLK PPPP P P ++ RP + PT KIP+NP K LLN
Sbjct: 31 SISFSLKPPPPPPPEPTNSSSIRRPKSLNPTPAPTPTPTPTPAPTTPKIPQNPLKTLLNP 90
Query: 78 ATTHVPSPPSH------SLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAE 131
+ + S + SLS KLRLSSKLS PPPPPPP E + P+++ E E
Sbjct: 91 SKPQITSSSATSTTDPLSLSTKLRLSSKLS---HPPPPPPPLETTRTPEAE-TQETRKVE 146
Query: 132 NRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
N +P +T+F Q+GKIF+GNLPNWIKKH + EFFRQFGPIKNV+LI G+N E
Sbjct: 147 NEAP---------KTDFCQKGKIFIGNLPNWIKKHELSEFFRQFGPIKNVVLINGHNETE 197
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNN 251
+N GFGF+IYDGP AEKSAMKA EFDG+EFHGRVLTVKLDDGRRLK KAE R WV G +
Sbjct: 198 RNAGFGFIIYDGPTAEKSAMKAEEFDGMEFHGRVLTVKLDDGRRLKAKAEERKNWVDGED 257
Query: 252 GEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD 311
G ++RS WH+ERE + FRK ++TQPENWQAVVSAFERIKKP+RREFGLMV YYARRGD
Sbjct: 258 GVDYRSKWHEEREGSTKAFRKVLDTQPENWQAVVSAFERIKKPARREFGLMVGYYARRGD 317
Query: 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371
MHRARQTFE+MR RGI P+ HVYT+LIHAYAVGRDMEEALSCVRKMKEEG+EMSLVTYSI
Sbjct: 318 MHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSI 377
Query: 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431
+VGGFAK+GNA+ Q+ NM+RAE+LVR+MEEEG
Sbjct: 378 VVGGFAKIGNAD-----------------------------QSCNMDRAESLVREMEEEG 408
Query: 432 IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491
IDAPIDIYH MM+GYT+IGNEEKCLIVF+RLKECGF+PS+ISYGCLIN+YTK+GKVSKAL
Sbjct: 409 IDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKAL 468
Query: 492 EVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAF 551
EVSK+M+S+GIKHNMKTYSMLINGFLKLKDW N F VFEDV++DGLKPDVVLYNNII+AF
Sbjct: 469 EVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAF 528
Query: 552 CGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611
CGMGNMDRAIH+VKEMQK+RHRPTSRTFMPIIHGFARAGEM+RALEIFDMMRRSGCIPTV
Sbjct: 529 CGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTV 588
Query: 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTK 671
HTFNAL+LGLVEKRQMEKA+EILDEM LAG+SP+EHTYTTIM+GYA+LGDTGKAFEYFTK
Sbjct: 589 HTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTK 648
Query: 672 LRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731
LRNEGLELDVFTYEALLKACCKSGRMQSALAVT+EMSAQ IPRNTFVYNILIDGWARRGD
Sbjct: 649 LRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGD 708
Query: 732 VWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767
VWEAADLMQQMKQEGVQPD+HTYTSFINAC KAGDM
Sbjct: 709 VWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDM 744
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1102 bits (2851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/777 (70%), Positives = 638/777 (82%), Gaps = 47/777 (6%)
Query: 5 LSLSAPHFPHTPATLLTHKPHHP-----TTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSS 59
LS S H T L HHP TT++SFS K PP S + P +PPK++
Sbjct: 4 LSFSTSHLSIPTKTTLFSPKHHPPSASAATTTVSFSHK-PPSDSNSAATPRRPSKPPKAT 62
Query: 60 RPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQ-E 118
T PPS+ L+ KL L+SKLSPPPPPPPPPPP ++ E
Sbjct: 63 PIT----------------------PPSNPLANKLWLTSKLSPPPPPPPPPPPPPEIDTE 100
Query: 119 PQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPI 178
+ + E D+++R+ +FRQ GKIFVGNLP W+KK V EFFRQFGPI
Sbjct: 101 TKKESGGEGADSDSRN-----------FDFRQPGKIFVGNLPAWVKKPQVAEFFRQFGPI 149
Query: 179 KNVILIKGYNNFEKNVGFGFVIYDG-----PAAEKSAMKAVEFDGVEFHGRVLTVKLDDG 233
++VIL KG+++ E++ GF FVIYDG A+K+AM+AVEFDGVEFHGRVLTVKLDDG
Sbjct: 150 RSVILFKGHHDTERSAGFAFVIYDGGEGDETKADKAAMRAVEFDGVEFHGRVLTVKLDDG 209
Query: 234 RRLKNKAEVRARWVAGNNGE--EFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERI 291
++++ ++E RARW+ GN G+ E+ ST HKER+ R+ F+K +ETQPENWQAVV+AFERI
Sbjct: 210 KKMRERSEERARWLQGNGGDKGEYPSTRHKERDGSRKSFQKVLETQPENWQAVVTAFERI 269
Query: 292 KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEAL 351
KKP+R+E+GLMV YYARRGDMH ARQTFE+M+ARGIEP+ HVY++LIHAYAVGRDMEEAL
Sbjct: 270 KKPARKEYGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEAL 329
Query: 352 SCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411
CVRKMKEEGIEM++VTYSIIVGGFAKMG A+AADHWF+EAKE+ +LNA+ YG+IIYA
Sbjct: 330 HCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSIIYAH 389
Query: 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI 471
CQT NM+RAEALVR+ME +GIDAPIDIYH MMDGYT+IGNEEKCLIVF+RLKECGFSPS+
Sbjct: 390 CQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSV 449
Query: 472 ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531
ISYGCLINLYTKIGKVSKAL++SK+MK SGIKHNMKTYSMLINGFLKLKDWAN F+VFED
Sbjct: 450 ISYGCLINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFED 509
Query: 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGE 591
+DGLKPDVVLYNNII AFCGM NMDRAI +VK+MQKER+RPT+RTF+PIIHGFARAGE
Sbjct: 510 FTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGE 569
Query: 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651
M+RALEIFDMMRRSGCIPTVHT+NALILGLVEKR+M KA+ ILD+M +AG+ PNEHTYTT
Sbjct: 570 MRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTT 629
Query: 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711
+M GYASLGDT KAF+YF+ LRNEGLE+DV+TYEALLK+CCKSGRMQSALAVTKEMSA+
Sbjct: 630 LMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKN 689
Query: 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQ 768
IPRNTFVYNILIDGWARRGDVWEAADLMQQM++EGV PD+HTYTSF+NAC KAGDMQ
Sbjct: 690 IPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQ 746
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/799 (68%), Positives = 639/799 (79%), Gaps = 50/799 (6%)
Query: 1 MDN---ILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPK 57
MDN +LSLSAPHFP++ L H P + SL + P PP P P +L RP K
Sbjct: 1 MDNGGSVLSLSAPHFPYSATILRRHSPMASISFSLKPPPQPPQPPPEPPESPPDLRRPEK 60
Query: 58 S------------SRPTRSKIPKNPFKNLLNSATTHVPSPPSHS------------LSAK 93
S ++ + NP K+L N ++ SP S L++K
Sbjct: 61 SLGSSSSSSSPSPIPSPKTPLKINPLKDLTNRSSV---SPLVQSEVSSKVSSFGSSLASK 117
Query: 94 LRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGK 153
LRLSSKLSPPPPPPPP E+ Q ND P E T + + EFRQEGK
Sbjct: 118 LRLSSKLSPPPPPPPPL--VEETQFRDDMRNDTKPPEEE--------TPKPQPEFRQEGK 167
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IFVGNLP WIKK EFFRQFGPI+NVILIKG++ EKN GFGF+IY AAEKSAMKA
Sbjct: 168 IFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIY---AAEKSAMKA 224
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEE-----FRSTWHKEREWHRR 268
VEFDGVEFHGR+LTVKLDDG+RLK KAE R RWV GEE +S+WH+ERE R+
Sbjct: 225 VEFDGVEFHGRILTVKLDDGKRLKTKAEQRVRWV--QEGEEDAKMSNKSSWHQEREGSRK 282
Query: 269 EFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIE 328
++ ++T +NWQAV+SAFE+I KPSR EFGLMV +Y RRGDMHRAR+TFE MRARGI
Sbjct: 283 SLQRILDTNGDNWQAVISAFEKINKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGIT 342
Query: 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388
PT +YT+LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS+IVGGF+K GNAEAADHW
Sbjct: 343 PTSRIYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHW 402
Query: 389 FEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI 448
F+EAK H TLNA IYG IIYA CQT NMERAEALVR+MEEEGIDAPI IYH MMDGYT+
Sbjct: 403 FDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTM 462
Query: 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKT 508
+ +E+K LIVF+RLKECGF+P++++YGCLINLYTK+GK+SKALEVS+VMK G+KHN+KT
Sbjct: 463 VADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKT 522
Query: 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQ 568
YSM+INGF+KLKDWAN FAVFED++++G+KPDV+LYNNII AFCGMGNMDRAI VKEMQ
Sbjct: 523 YSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQ 582
Query: 569 KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQME 628
K RHRPT+RTFMPII+GFA++G+M+R+LE+FDMMRR GC+PTVHTFNALI GLVEKRQME
Sbjct: 583 KLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQME 642
Query: 629 KAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALL 688
KA+EILDEMTLAG+S NEHTYT IM GYAS+GDTGKAFEYFT+L+NEGLE+D+FTYEALL
Sbjct: 643 KAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALL 702
Query: 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ 748
KACCKSGRMQSALAVTKEMSA+ IPRN+FVYNILIDGWARRGDVWEAADL+QQMK+EGV+
Sbjct: 703 KACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVK 762
Query: 749 PDVHTYTSFINACSKAGDM 767
PD+HTYTSFI+ACSKAGDM
Sbjct: 763 PDIHTYTSFISACSKAGDM 781
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04810, chloroplastic; AltName: Full=Maize PPR4 homolog; Short=AtPPR4; Flags: Precursor gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis thaliana] gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/801 (69%), Positives = 649/801 (81%), Gaps = 55/801 (6%)
Query: 1 MDN---ILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPH-NLHRPP 56
MDN +LSLSAPHFP++ L H P S+SFSLKQPPP P PPE +L RP
Sbjct: 1 MDNGGSVLSLSAPHFPYSATILRRHSP----VASISFSLKQPPPQPPEPPESPPDLRRPE 56
Query: 57 KSSRPT------------RSKIPKNPFKNLLNSATTHVPSPPSHS------------LSA 92
KS + ++ + NP K L N ++ SP S L++
Sbjct: 57 KSIGSSSSSSSPSPIPSPKTPLKINPLKGLTNRSSV---SPLVQSEVSSKVSSFGSSLAS 113
Query: 93 KLRLSSKLSPPPPPPPPPPPAEQLQ-EPQSQGNDEIPDAENRSPSSSLATSQEETEFRQE 151
KLRLSSKLSPPPPPPPPPP E Q + + + + P+ E R+P + EFRQE
Sbjct: 114 KLRLSSKLSPPPPPPPPPPVEETTQFRDEFRSDTKPPEEETRNP---------QQEFRQE 164
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
GKIFVGNLP WIKK EFFRQFGPI+NVILIKG++ EKN GFGF+IY AAEKSAM
Sbjct: 165 GKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIY---AAEKSAM 221
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEE-----FRSTWHKEREWH 266
KAVEFDGVEFHGR+LTVKLDDG+RLK KAE R RWV GEE +S+WH+ERE
Sbjct: 222 KAVEFDGVEFHGRILTVKLDDGKRLKTKAEQRVRWV--EEGEEDTKMSNKSSWHQEREGS 279
Query: 267 RREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARG 326
R+ ++ ++T +NWQAV+SAFE+I KPSR EFGLMV +Y RRGDMHRAR+TFE MRARG
Sbjct: 280 RKSLQRILDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARG 339
Query: 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386
I PT +YT+LIHAYAVGRDM+EALSCVRKMKEEGIEMSLVTYS+IVGGF+K G+AEAAD
Sbjct: 340 ITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAAD 399
Query: 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446
+WF+EAK H TLNA IYG IIYA CQT NMERAEALVR+MEEEGIDAPI IYH MMDGY
Sbjct: 400 YWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGY 459
Query: 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506
T++ +E+K L+VF+RLKECGF+P++++YGCLINLYTK+GK+SKALEVS+VMK G+KHN+
Sbjct: 460 TMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNL 519
Query: 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKE 566
KTYSM+INGF+KLKDWAN FAVFED++++G+KPDV+LYNNII AFCGMGNMDRAI VKE
Sbjct: 520 KTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKE 579
Query: 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626
MQK RHRPT+RTFMPIIHG+A++G+M+R+LE+FDMMRR GC+PTVHTFN LI GLVEKRQ
Sbjct: 580 MQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ 639
Query: 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686
MEKA+EILDEMTLAG+S NEHTYT IM GYAS+GDTGKAFEYFT+L+NEGL++D+FTYEA
Sbjct: 640 MEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA 699
Query: 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746
LLKACCKSGRMQSALAVTKEMSA+ IPRN+FVYNILIDGWARRGDVWEAADL+QQMK+EG
Sbjct: 700 LLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEG 759
Query: 747 VQPDVHTYTSFINACSKAGDM 767
V+PD+HTYTSFI+ACSKAGDM
Sbjct: 760 VKPDIHTYTSFISACSKAGDM 780
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 798 | ||||||
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.946 | 0.793 | 0.661 | 4.3e-276 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.619 | 0.655 | 0.269 | 4.8e-55 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.624 | 0.791 | 0.25 | 9.2e-52 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.588 | 0.643 | 0.283 | 6.5e-51 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.590 | 0.630 | 0.275 | 1.6e-50 | |
| TAIR|locus:2132937 | 704 | RPF5 "AT4G28010" [Arabidopsis | 0.580 | 0.657 | 0.270 | 1.7e-50 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.592 | 0.579 | 0.264 | 1.7e-50 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.590 | 0.646 | 0.257 | 2e-50 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.624 | 0.785 | 0.234 | 2.2e-50 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.586 | 0.742 | 0.245 | 2.9e-50 |
| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2654 (939.3 bits), Expect = 4.3e-276, P = 4.3e-276
Identities = 524/792 (66%), Positives = 609/792 (76%)
Query: 1 MDN---ILSLSAPHFXXXXXXXXXXXXXXXXXXSLSFSLKQXXXXXXXXXXXH-NLHRPP 56
MDN +LSLSAPHF S+SFSLKQ +L RP
Sbjct: 1 MDNGGSVLSLSAPHFPYSATILRRHSPVA----SISFSLKQPPPQPPEPPESPPDLRRPE 56
Query: 57 KS-------SRPTRSKIPKNPFK-NLLNSATTHVPSPPXXXXXXXXXXXXXXXXXXXXXX 108
KS S P+ PK P K N L T P
Sbjct: 57 KSIGSSSSSSSPSPIPSPKTPLKINPLKGLTNRSSVSPLVQSEVSSKVSSFGSSLASKLR 116
Query: 109 XXXXAEQLQEPQ--------SQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLP 160
P +Q DE ++ + P Q+E FRQEGKIFVGNLP
Sbjct: 117 LSSKLSPPPPPPPPPPVEETTQFRDEFR-SDTKPPEEETRNPQQE--FRQEGKIFVGNLP 173
Query: 161 NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220
WIKK EFFRQFGPI+NVILIKG++ EKN GFGF+IY AAEKSAMKAVEFDGVE
Sbjct: 174 TWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIY---AAEKSAMKAVEFDGVE 230
Query: 221 FHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEF-----RSTWHKEREWHRREFRKAVE 275
FHGR+LTVKLDDG+RLK KAE R RWV GEE +S+WH+ERE R+ ++ ++
Sbjct: 231 FHGRILTVKLDDGKRLKTKAEQRVRWV--EEGEEDTKMSNKSSWHQEREGSRKSLQRILD 288
Query: 276 TQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYT 335
T +NWQAV+SAFE+I KPSR EFGLMV +Y RRGDMHRAR+TFE MRARGI PT +YT
Sbjct: 289 TNGDNWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYT 348
Query: 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395
+LIHAYAVGRDM+EALSCVRKMKEEGIEMSLVTYS+IVGGF+K G+AEAAD+WF+EAK
Sbjct: 349 SLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRI 408
Query: 396 HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455
H TLNA IYG IIYA CQT NMERAEALVR+MEEEGIDAPI IYH MMDGYT++ +E+K
Sbjct: 409 HKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKG 468
Query: 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLING 515
L+VF+RLKECGF+P++++YGCLINLYTK+GK+SKALEVS+VMK G+KHN+KTYSM+ING
Sbjct: 469 LVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMING 528
Query: 516 FLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT 575
F+KLKDWAN FAVFED++++G+KPDV+LYNNII AFCGMGNMDRAI VKEMQK RHRPT
Sbjct: 529 FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT 588
Query: 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD 635
+RTFMPIIHG+A++G+M+R+LE+FDMMRR GC+PTVHTFN LI GLVEKRQMEKA+EILD
Sbjct: 589 TRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILD 648
Query: 636 EMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695
EMTLAG+S NEHTYT IM GYAS+GDTGKAFEYFT+L+NEGL++D+FTYEALLKACCKSG
Sbjct: 649 EMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSG 708
Query: 696 RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755
RMQSALAVTKEMSA+ IPRN+FVYNILIDGWARRGDVWEAADL+QQMK+EGV+PD+HTYT
Sbjct: 709 RMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYT 768
Query: 756 SFINACSKAGDM 767
SFI+ACSKAGDM
Sbjct: 769 SFISACSKAGDM 780
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 136/505 (26%), Positives = 259/505 (51%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
KP F +++ R + A E+M + G+ P +T ++ Y D++ AL
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-NAIIYGNIIYAQ 411
+M E G S V+ ++IV GF K G E A ++ +E + + + ++
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL--KECGFSP 469
C+ +++ A ++ M +EG D + Y+ ++ G +G ++ + V +++ ++C SP
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC--SP 363
Query: 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529
+ ++Y LI+ K +V +A E+++V+ S GI ++ T++ LI G ++ +F
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 530 EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589
E++ G +PD YN +I + C G +D A++++K+M+ + T+ +I GF +A
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483
Query: 590 GEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTY 649
+ + A EIFD M G T+N LI GL + R++E A +++D+M + G P+++TY
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543
Query: 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709
+++ + GD KA + + + G E D+ TY L+ CK+GR++ A + + +
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQM 603
Query: 710 QKIPRNTFVYNILIDGWARRGDVWEAADLMQQM-KQEGVQPDVHTYTS-FINACSKAGDM 767
+ I YN +I G R+ EA +L ++M +Q PD +Y F C+ G +
Sbjct: 604 KGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPI 663
Query: 768 Q--VRFSIPMLTKFYL--FSFIWFL 788
+ V F + +L K ++ FS ++ L
Sbjct: 664 REAVDFLVELLEKGFVPEFSSLYML 688
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 126/504 (25%), Positives = 243/504 (48%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKKP----SRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + V+S ER++ + +++N + RR + A M
Sbjct: 82 EFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKM 141
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP + ++L++ Y G+ + EA++ V +M + + VT++ ++ G A
Sbjct: 142 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKA 201
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + R + YG ++ C+ +++ A +L++ ME+ I+A + IY +
Sbjct: 202 SEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTI 261
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D N L +F + G P++++Y LI G+ S A + M I
Sbjct: 262 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T+S LI+ F+K +++++++ + PD+ Y+++I FC +D A H
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF +A ++ +E+F M + G + T+N LI GL
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ + A +I +M G+ P+ TY+ ++ G G KA F L+ +E D++
Sbjct: 442 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
TY +++ CK+G+++ + +S + + N +Y +I G+ R+G EA L ++M
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 743 KQEGVQPDVHTYTSFINACSKAGD 766
K++G P+ TY + I A + GD
Sbjct: 562 KEDGTLPNSGTYNTLIRARLRDGD 585
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| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 136/479 (28%), Positives = 239/479 (49%)
Query: 293 KPSRREFGLMVNYYARRGDMHR-ARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEAL 351
+P+ + + +++ G+ H+ A F +M +R I PTL + ++ A+ +++ AL
Sbjct: 179 EPTFKSYNVVLEILVS-GNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSAL 237
Query: 352 SCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411
S +R M + G + V Y ++ +K A EE +A + ++I
Sbjct: 238 SLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297
Query: 412 CQTRNMERAEALVRDMEEEGIDAPIDI-YHMMMDGYTIIGNEEKCLIVFERLKECGFSPS 470
C+ + A +V M G AP DI Y +M+G IG + +F R+ + P
Sbjct: 298 CKFDRINEAAKMVNRMLIRGF-APDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PE 352
Query: 471 IISYGCLINLYTKIGKVSKALEV-SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529
I+ + LI+ + G++ A V S ++ S GI ++ TY+ LI G+ K V
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 530 EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589
D+ G KP+V Y ++ FC +G +D A +++ EM + +P + F +I F +
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472
Query: 590 GEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTY 649
+ A+EIF M R GC P V+TFN+LI GL E +++ A+ +L +M G+ N TY
Sbjct: 473 HRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY 532
Query: 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709
T+++ + G+ +A + ++ +G LD TY +L+K C++G + A ++ ++M
Sbjct: 533 NTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 592
Query: 710 QKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQ 768
+ NILI+G R G V EA + ++M G PD+ T+ S IN +AG ++
Sbjct: 593 DGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIE 651
|
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| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 1.6e-50, P = 1.6e-50
Identities = 135/490 (27%), Positives = 246/490 (50%)
Query: 319 FENMRARGIEPTLHVYTNL-IH--AYAVGRDM------EEALSCVRKMKEEGIEMSLVTY 369
F +R + I TLH+ T ++ A + D+ +E S V K +E ++ T
Sbjct: 77 FFTLRCKCI--TLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTS 134
Query: 370 SI---IVGGFAKMGNAEAADHWFEEAKERHATLNAII-YGNIIYAQCQT-RNMERAEALV 424
S+ +V ++++ + A A + H + ++ Y ++ A ++ RN+ AE +
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLA-QAHGFMPGVLSYNAVLDATIRSKRNISFAENVF 193
Query: 425 RDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI 484
++M E + + Y++++ G+ GN + L +F++++ G P++++Y LI+ Y K+
Sbjct: 194 KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL 253
Query: 485 GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLY 544
K+ ++ + M G++ N+ +Y+++ING + V V ++ R G D V Y
Sbjct: 254 RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Query: 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604
N +I+ +C GN +A+ + EM + P+ T+ +IH +AG M RA+E D MR
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGK 664
G P T+ L+ G +K M +A +L EM G SP+ TY +++G+ G
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433
Query: 665 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724
A ++ +GL DV +Y +L C+S + AL V +EM + I +T Y+ LI
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Query: 725 GWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSI--PMLTKFYLF 782
G+ + EA DL ++M + G+ PD TYT+ INA GD++ + M+ K L
Sbjct: 494 GFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553
Query: 783 SFIWFLITMN 792
+ + + +N
Sbjct: 554 DVVTYSVLIN 563
|
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| TAIR|locus:2132937 RPF5 "AT4G28010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 127/469 (27%), Positives = 233/469 (49%)
Query: 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360
+++ R + +A MR + P + Y +I + G+++E+AL +MK
Sbjct: 147 ILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGS 206
Query: 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERA 420
G SLVT+ I++ F K G + A + +E K + ++Y ++I C ++R
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266
Query: 421 EALVRDMEEEGIDAPIDI-YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLIN 479
+AL ++ E G D+P I Y+ ++ G+ +G ++ +FE + E G P++ +Y LI+
Sbjct: 267 KALFDEVLERG-DSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLID 325
Query: 480 LYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP 539
+GK +AL++ +M + N TY+++IN K A+ + E + + +P
Sbjct: 326 GLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRP 385
Query: 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR--PTSRTFMPIIHGFARAGEMKRALE 597
D + YN ++ C G++D A ++ M K+ P ++ +IHG + + +AL+
Sbjct: 386 DNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALD 445
Query: 598 IFDMM-RRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY 656
I+D++ + G V T N L+ ++ + KA+E+ +++ + I N TYT ++ G+
Sbjct: 446 IYDLLVEKLGAGDRVTT-NILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504
Query: 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT 716
G A K+R L+ VF Y LL + CK G + A + +EM +
Sbjct: 505 CKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDV 564
Query: 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765
+NI+IDG + GD+ A L+ M + G+ PD+ TY+ IN K G
Sbjct: 565 VSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLG 613
|
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| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 125/473 (26%), Positives = 232/473 (49%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALS 352
+PS+ +G + + D+ + + F M+ I P++ +Y LI G+ M +A
Sbjct: 176 RPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQ 235
Query: 353 CVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412
+M + SL+TY+ ++ G+ K GN E + E K H + I + ++
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Query: 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSII 472
+ +E AE ++++M++ G + ++ DGY+ E L V+E + G +
Sbjct: 296 KAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAY 355
Query: 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532
+ L+N K GK+ KA E+ + G+ N Y+ +I+G+ + D E +
Sbjct: 356 TCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAM 415
Query: 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEM 592
+ G+KPD + YN +IR FC +G M+ A V +M+ + P+ T+ +I G+ R E
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475
Query: 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652
+ +I M +G +P V ++ LI L + ++ +A + +M G+SP Y +
Sbjct: 476 DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNML 535
Query: 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712
+ G S G AF + ++ +G+EL++ TY L+ +G++ A + E+S + +
Sbjct: 536 IDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGL 595
Query: 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765
+ F YN LI G+ G+V L ++MK+ G++P + TY I+ C+K G
Sbjct: 596 KPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG 648
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.0e-50, Sum P(2) = 2.0e-50
Identities = 123/477 (25%), Positives = 224/477 (46%)
Query: 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360
+MVN + G M + ++ +G+ P + Y LI AY+ MEEA + M +
Sbjct: 240 IMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGK 299
Query: 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERA 420
G + TY+ ++ G K G E A F E + ++ Y +++ C+ ++
Sbjct: 300 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVET 359
Query: 421 EALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480
E + DM + + + MM +T GN +K L+ F +KE G P + Y LI
Sbjct: 360 EKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419
Query: 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD 540
Y + G +S A+ + M G ++ TY+ +++G K K +F ++ L PD
Sbjct: 420 YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPD 479
Query: 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIF- 599
+I C +GN+ A+ + ++M+++R R T+ ++ GF + G++ A EI+
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539
Query: 600 DMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL 659
DM+ + +PT +++ L+ L K + +A + DEM I P +++ GY
Sbjct: 540 DMVSKE-ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598
Query: 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK---IPRNT 716
G+ + K+ +EG D +Y L+ + M A + K+M ++ +P +
Sbjct: 599 GNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVP-DV 657
Query: 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSI 773
F YN ++ G+ R+ + EA ++++M + GV PD TYT IN ++ F I
Sbjct: 658 FTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRI 714
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| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 118/504 (23%), Positives = 247/504 (49%)
Query: 269 EFRKAVET--QPENWQAVVSAFERIKK----PSRREFGLMVNYYARRGDMHRARQTFENM 322
EF K + + + + V+S E++++ + +++N + RR + A M
Sbjct: 87 EFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKM 146
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
G EP++ ++L++ Y G+ + +A++ V +M E G +T++ ++ G A
Sbjct: 147 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + +R N + YG ++ C+ + + A L+ ME I+A + I++ +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
+D + + L +F+ ++ G P++++Y LI+ G+ S A ++ M I
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
N+ T++ LI+ F+K + +++D+++ + PD+ YN+++ FC +D+A
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
+ + M + P T+ +I GF ++ ++ E+F M G + T+ LI GL
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
+ A ++ +M G+ P+ TY+ ++ G + G KA E F ++ ++LD++
Sbjct: 447 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIY 506
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
Y +++ CK+G++ + +S + + N YN +I G + + EA L+++M
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566
Query: 743 KQEGVQPDVHTYTSFINACSKAGD 766
K++G P+ TY + I A + GD
Sbjct: 567 KEDGPLPNSGTYNTLIRAHLRDGD 590
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.9e-50, P = 2.9e-50
Identities = 115/468 (24%), Positives = 227/468 (48%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358
+ +++N + RR + A M G EP + +L++ + G + +A+S V +M
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178
Query: 359 EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME 418
E G + T++ ++ G + A A + + + + YG ++ C+ +++
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238
Query: 419 RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478
A +L++ ME+ I+ + IY+ ++D N L +F + G P++++Y LI
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298
Query: 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538
G+ S A + M I N+ T+S LI+ F+K +++++++ +
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358
Query: 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI 598
PD+ Y+++I FC +D A H+ + M + P T+ +I GF +A + +E+
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418
Query: 599 FDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658
F M + G + T+ LI G + R+ + A + +M G+ P+ TY+ ++ G +
Sbjct: 419 FREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCN 478
Query: 659 LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFV 718
G A F L+ +E D++TY +++ CK+G+++ + +S + + N
Sbjct: 479 NGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVT 538
Query: 719 YNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGD 766
Y ++ G+ R+G EA L ++MK+EG PD TY + I A + GD
Sbjct: 539 YTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGD 586
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WMY5 | PP365_ARATH | No assigned EC number | 0.6903 | 0.9348 | 0.7836 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00013814001 | SubName- Full=Chromosome undetermined scaffold_100, whole genome shotgun sequence; (929 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 798 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-34 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-28 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-27 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| smart00360 | 73 | smart00360, RRM, RNA recognition motif | 5e-14 | |
| cd00590 | 72 | cd00590, RRM_SF, RNA recognition motif (RRM) super | 9e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| pfam00076 | 70 | pfam00076, RRM_1, RNA recognition motif | 6e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| cd12240 | 78 | cd12240, RRM_NCBP2, RNA recognition motif found in | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam14259 | 69 | pfam14259, RRM_6, RNA recognition motif (a | 2e-08 | |
| cd12384 | 76 | cd12384, RRM_RBM24_RBM38_like, RNA recognition mot | 5e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| cd12332 | 71 | cd12332, RRM1_p54nrb_like, RNA recognition motif 1 | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| cd12413 | 79 | cd12413, RRM1_RBM28_like, RNA recognition motif 1 | 3e-07 | |
| cd12229 | 81 | cd12229, RRM_G3BP, RNA recognition motif (RRM) in | 3e-07 | |
| cd12347 | 73 | cd12347, RRM_PPIE, RNA recognition motif in cyclop | 4e-07 | |
| cd12298 | 78 | cd12298, RRM3_Prp24, RNA recognition motif 3 in fu | 4e-07 | |
| cd12336 | 75 | cd12336, RRM_RBM7_like, RNA recognition motif in R | 4e-07 | |
| cd12449 | 80 | cd12449, RRM_CIRBP_RBM3, RNA recognition motif in | 5e-07 | |
| cd12415 | 82 | cd12415, RRM3_RBM28_like, RNA recognition motif 3 | 5e-07 | |
| COG0724 | 306 | COG0724, COG0724, RNA-binding proteins (RRM domain | 1e-06 | |
| cd12450 | 77 | cd12450, RRM1_NUCLs, RNA recognition motif 1 found | 1e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-06 | |
| cd12399 | 78 | cd12399, RRM_HP0827_like, RNA recognition motif in | 2e-06 | |
| cd12382 | 80 | cd12382, RRM_RBMX_like, RNA recognition motif in h | 2e-06 | |
| cd12387 | 72 | cd12387, RRM3_hnRNPM_like, RNA recognition motif 3 | 2e-06 | |
| cd12231 | 77 | cd12231, RRM2_U2AF65, RNA recognition motif 2 foun | 2e-06 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 3e-06 | |
| cd12242 | 73 | cd12242, RRM_SLIRP, RNA recognition motif found in | 3e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-06 | |
| cd12380 | 80 | cd12380, RRM3_I_PABPs, RNA recognition motif 3 fou | 3e-06 | |
| cd12373 | 73 | cd12373, RRM_SRSF3_like, RNA recognition motif in | 4e-06 | |
| cd12395 | 73 | cd12395, RRM2_RBM34, RNA recognition motif 2 in RN | 5e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| cd12392 | 81 | cd12392, RRM2_SART3, RNA recognition motif 2 in sq | 6e-06 | |
| cd12674 | 79 | cd12674, RRM1_Nop4p, RNA recognition motif 1 in ye | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-06 | |
| cd12614 | 74 | cd12614, RRM1_PUB1, RNA recognition motif 1 in yea | 7e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-05 | |
| cd12398 | 75 | cd12398, RRM_CSTF2_RNA15_like, RNA recognition mot | 1e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-05 | |
| cd12338 | 72 | cd12338, RRM1_SRSF1_like, RNA recognition motif 1 | 2e-05 | |
| cd12365 | 73 | cd12365, RRM_RNPS1, RNA recognition motif in RNA-b | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| cd12579 | 80 | cd12579, RRM2_hnRNPA0, RNA recognition motif 2 in | 3e-05 | |
| cd12343 | 66 | cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 | 3e-05 | |
| cd12330 | 75 | cd12330, RRM2_Hrp1p, RNA recognition motif 2 in ye | 3e-05 | |
| pfam05308 | 248 | pfam05308, Mito_fiss_reg, Mitochondrial fission re | 3e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 5e-05 | |
| cd12316 | 74 | cd12316, RRM3_RBM19_RRM2_MRD1, RNA recognition mot | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 7e-05 | |
| cd12337 | 70 | cd12337, RRM1_SRSF4_like, RNA recognition motif 1 | 7e-05 | |
| cd12411 | 89 | cd12411, RRM_ist3_like, RNA recognition motif in i | 7e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| cd12567 | 79 | cd12567, RRM3_RBM19, RNA recognition motif 3 in RN | 8e-05 | |
| cd12578 | 78 | cd12578, RRM1_hnRNPA_like, RNA recognition motif 1 | 8e-05 | |
| cd12454 | 80 | cd12454, RRM2_RIM4_like, RNA recognition motif 2 i | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| cd12341 | 68 | cd12341, RRM_hnRNPC_like, RNA recognition motif in | 9e-05 | |
| cd12571 | 79 | cd12571, RRM6_RBM19, RNA recognition motif 6 in RN | 9e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| cd12236 | 91 | cd12236, RRM_snRNP70, RNA recognition motif in U1 | 1e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-04 | |
| cd12377 | 78 | cd12377, RRM3_Hu, RNA recognition motif 3 in the H | 1e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 1e-04 | |
| cd12362 | 73 | cd12362, RRM3_CELF1-6, RNA recognition motif 3 in | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 2e-04 | |
| cd12394 | 91 | cd12394, RRM1_RBM34, RNA recognition motif 1 in RN | 2e-04 | |
| pfam00859 | 295 | pfam00859, CTF_NFI, CTF/NF-I family transcription | 2e-04 | |
| PLN03153 | 537 | PLN03153, PLN03153, hypothetical protein; Provisio | 2e-04 | |
| cd12273 | 71 | cd12273, RRM1_NEFsp, RNA recognition motif 1 in ve | 2e-04 | |
| cd12327 | 80 | cd12327, RRM2_DAZAP1, RNA recognition motif 2 in D | 2e-04 | |
| pfam13254 | 414 | pfam13254, DUF4045, Domain of unknown function (DU | 2e-04 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| PHA03419 | 200 | PHA03419, PHA03419, E4 protein; Provisional | 3e-04 | |
| cd12412 | 80 | cd12412, RRM_DAZL_BOULE, RNA recognition motif in | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| cd12570 | 76 | cd12570, RRM5_MRD1, RNA recognition motif 5 in yea | 4e-04 | |
| cd12323 | 74 | cd12323, RRM2_MSI, RNA recognition motif 2 in RNA- | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| cd12446 | 84 | cd12446, RRM_RBM25, RNA recognition motif in eukar | 5e-04 | |
| cd12352 | 72 | cd12352, RRM1_TIA1_like, RNA recognition motif 1 i | 5e-04 | |
| cd12318 | 82 | cd12318, RRM5_RBM19_like, RNA recognition motif 5 | 5e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| cd12334 | 74 | cd12334, RRM1_SF3B4, RNA recognition motif 1 in sp | 6e-04 | |
| pfam06409 | 350 | pfam06409, NPIP, Nuclear pore complex interacting | 6e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 7e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 7e-04 | |
| cd12284 | 73 | cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 | 7e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 8e-04 | |
| cd12370 | 76 | cd12370, RRM1_PUF60, RNA recognition motif 1 in (U | 8e-04 | |
| cd12328 | 73 | cd12328, RRM2_hnRNPA_like, RNA recognition motif 2 | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-04 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 9e-04 | |
| cd12342 | 71 | cd12342, RRM_Nab3p, RNA recognition motif in yeast | 9e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 0.001 | |
| PTZ00449 | 943 | PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti | 0.001 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.001 | |
| cd12361 | 77 | cd12361, RRM1_2_CELF1-6_like, RNA recognition moti | 0.001 | |
| pfam02711 | 95 | pfam02711, Pap_E4, E4 protein | 0.001 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 0.001 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.001 | |
| cd12322 | 71 | cd12322, RRM2_TDP43, RNA recognition motif 2 in TA | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| PTZ00449 | 943 | PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti | 0.002 | |
| cd12593 | 75 | cd12593, RRM_RBM11, RNA recognition motif in verte | 0.002 | |
| cd12463 | 80 | cd12463, RRM_G3BP1, RNA recognition motif found in | 0.002 | |
| pfam13893 | 56 | pfam13893, RRM_5, RNA recognition motif | 0.002 | |
| cd12223 | 84 | cd12223, RRM_SR140, RNA recognition motif (RRM) in | 0.002 | |
| TIGR02031 | 589 | TIGR02031, BchD-ChlD, magnesium chelatase ATPase s | 0.002 | |
| cd12656 | 86 | cd12656, RRM3_HuD, RNA recognition motif 3 in vert | 0.002 | |
| cd12391 | 72 | cd12391, RRM1_SART3, RNA recognition motif 1 in sq | 0.002 | |
| cd12354 | 73 | cd12354, RRM3_TIA1_like, RNA recognition motif 2 i | 0.002 | |
| pfam04554 | 57 | pfam04554, Extensin_2, Extensin-like region | 0.002 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| cd12671 | 75 | cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif i | 0.003 | |
| cd12267 | 77 | cd12267, RRM_YRA1_MLO3, RNA recognition motif in y | 0.003 | |
| pfam04621 | 336 | pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain t | 0.003 | |
| cd12653 | 84 | cd12653, RRM3_HuR, RNA recognition motif 3 in vert | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| pfam12287 | 319 | pfam12287, Caprin-1_C, Cytoplasmic activation/prol | 0.004 | |
| pfam12737 | 418 | pfam12737, Mating_C, C-terminal domain of homeodom | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 4e-38
Identities = 97/440 (22%), Positives = 204/440 (46%), Gaps = 42/440 (9%)
Query: 266 HRREFRKAVETQPENWQAVVSAF---ERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322
+ +F KA + Q +AV AF + I+ P+ F ++++ A D+ A + +
Sbjct: 408 YHAKFFKACKKQ----RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLV 463
Query: 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382
+ G++ +YT LI A ++ +M G+E ++ T+ ++ G A+ G
Sbjct: 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
Query: 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMM 442
A + + ++ + +++ +I A Q+ ++RA ++ +M+ E PID
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET--HPID----- 576
Query: 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502
P I+ G L+ G+V +A EV +++ I
Sbjct: 577 --------------------------PDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 503 KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562
K + Y++ +N + DW ++++D+ + G+KPD V ++ ++ G++D+A
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622
I+++ +K+ + + ++ ++ + A K+ALE+++ ++ PTV T NALI L
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF 682
E Q+ KA+E+L EM G+ PN TY+ ++ D + ++ + +G++ ++
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790
Query: 683 TYEALLKACCKSGRMQSALA 702
+ C + R + A A
Sbjct: 791 MCRCITGLCLR--RFEKACA 808
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-34
Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 4/324 (1%)
Query: 458 VFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFL 517
V ++E G Y LI+ K GKV EV M ++G++ N+ T+ LI+G
Sbjct: 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518
Query: 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM-GNMDRAIHIVKEMQKERH--RP 574
+ A F + + +KPD V++N +I A CG G +DRA ++ EM+ E H P
Sbjct: 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA-CGQSGAVDRAFDVLAEMKAETHPIDP 577
Query: 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEIL 634
T ++ A AG++ RA E++ M+ T + + +K + A+ I
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 635 DEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKS 694
D+M G+ P+E ++ ++ GD KAFE R +G++L +Y +L+ AC +
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 695 GRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY 754
+ AL + +++ + K+ N LI + +A +++ +MK+ G+ P+ TY
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757
Query: 755 TSFINACSKAGDMQVRFSIPMLTK 778
+ + A + D V + K
Sbjct: 758 SILLVASERKDDADVGLDLLSQAK 781
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 4e-28
Identities = 92/436 (21%), Positives = 177/436 (40%), Gaps = 72/436 (16%)
Query: 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387
PTL + L+ A +D++ AL +R ++E G++ Y+ ++ AK G +A
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT 447
F E M G++A + + ++DG
Sbjct: 494 VFHE-----------------------------------MVNAGVEANVHTFGALIDG-- 516
Query: 448 IIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMK 507
C + G+V+KA +M+S +K +
Sbjct: 517 -----------------CA----------------RAGQVAKAFGAYGIMRSKNVKPDRV 543
Query: 508 TYSMLINGFLKLKDWANVFAVFEDVMRDG--LKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565
++ LI+ + F V ++ + + PD + +++A G +DRA + +
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKR 625
+ + + T + ++ ++ G+ AL I+D M++ G P F+AL+
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663
Query: 626 QMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYE 685
++KA EIL + GI +Y+++M ++ + KA E + +++ L V T
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745
AL+ A C+ ++ AL V EM + NT Y+IL+ R+ D DL+ Q K++
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783
Query: 746 GVQPDVHTYTSFINAC 761
G++P++ C
Sbjct: 784 GIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-27
Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 6/286 (2%)
Query: 485 GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLY 544
V +A +K++++ + T++ML++ +D V V GLK D LY
Sbjct: 420 RAVKEAFRFAKLIRNP----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLY 475
Query: 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR 604
+I G +D + EM TF +I G ARAG++ +A + +MR
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG--ISPNEHTYTTIMHGYASLGDT 662
P FNALI + +++A ++L EM I P+ T +M A+ G
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNIL 722
+A E + + ++ Y + +C + G AL++ +M + + + ++ L
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 723 IDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQ 768
+D GD+ +A +++Q +++G++ +Y+S + ACS A + +
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 1e-17
Identities = 110/511 (21%), Positives = 214/511 (41%), Gaps = 50/511 (9%)
Query: 292 KKPSRREFG--LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA------YAV 343
K P R F ++V YA+ G A + M G+ P ++ + ++ A
Sbjct: 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205
Query: 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA-TLNAI 402
GR E VR G E+ + + ++ + K G+ +A F+ R + NA+
Sbjct: 206 GR--EVHAHVVRF----GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM 259
Query: 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462
I G +C L M E +D + ++ ++G+E + +
Sbjct: 260 ISGYFENGEC-----LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 463 KECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK--LK 520
+ GF+ + LI +Y +G +A +V M++ +++ +I+G+ K L
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLP 370
Query: 521 DWA-NVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTF 579
D A +A+ E +D + PD + +++ A +G++D + + + +++
Sbjct: 371 DKALETYALME---QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL 639
+I +++ + +ALE+F + I ++ ++I GL + +A+ +M L
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQM-L 482
Query: 640 AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699
+ PN T + A +G E + G+ D F ALL + GRM
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 700 ALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759
A + ++ + ++ +NIL+ G+ G A +L +M + GV PD T+ S +
Sbjct: 543 AWN---QFNSHE--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597
Query: 760 ACSKAG----------DMQVRFSIPMLTKFY 780
ACS++G M+ ++SI K Y
Sbjct: 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-17
Identities = 78/344 (22%), Positives = 140/344 (40%), Gaps = 67/344 (19%)
Query: 485 GKVSKALEVSKVMKSSG-IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543
G+ +ALE+ +++++ TY L+ + LK V AV+ V G +PD +
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 544 YNNIIRAF--CGM-----------------------------GNMDRAIHIVKEMQKERH 572
N ++ CGM GN A + +EM ++
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 573 RPTSRTFMPIIH-----GFARAGEMKR--------------ALEIFDMMRRSG------- 606
RTF+ ++ G ARAG+ + + DM + G
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 607 ---CIP--TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD 661
+P T +N+++ G E+A+ + EM +G+S ++ T++ ++ ++ L
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721
A + L G LD+ AL+ K GRM+ A V M +N +N
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396
Query: 722 LIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765
LI G+ G +A ++ ++M EGV P+ T+ + ++AC +G
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 5e-15
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSK 763
+ YN LIDG+ ++G V EA L +MK+ G++P+V+TY+ I+ K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-14
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 609 PTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYA 657
P V T+N LI G +K ++E+A+++ +EM GI PN +TY+ ++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|214636 smart00360, RRM, RNA recognition motif | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-14
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FVGNLP + + E F +FG +++V L++ K+ GF FV ++ +E+ A K
Sbjct: 1 TLFVGNLPPDTTEEELRELFSKFGKVESVRLVRDKET-GKSKGFAFVEFE---SEEDAEK 56
Query: 213 AVE-FDGVEFHGRVLTV 228
A+E +G E GR L V
Sbjct: 57 ALEALNGKELDGRPLKV 73
|
Length = 73 |
| >gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-14
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNLP + + E F +FG I++V +++ + K+ GF FV ++ P A KA
Sbjct: 1 LFVGNLPPDTTEEDLRELFSKFGEIESVRIVRDKDG--KSKGFAFVEFESPE---DAEKA 55
Query: 214 VE-FDGVEFHGRVLTVK 229
+E +G E GR L V
Sbjct: 56 LEALNGKELDGRKLKVS 72
|
RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 67/301 (22%), Positives = 132/301 (43%), Gaps = 28/301 (9%)
Query: 477 LINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG 536
+++++ + G++ A V M + ++ ++++L+ G+ K + ++ ++ G
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182
Query: 537 LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSR--------TFMPIIHGFAR 588
++PDV + ++R CG G D A +E H R +I + +
Sbjct: 183 VRPDVYTFPCVLRT-CG-GIPDLA------RGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHT 648
G++ A +FD M R CI ++NA+I G E + + +E+ M + P+ T
Sbjct: 235 CGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708
T+++ LGD E + G +DV +L++ G A V M
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 709 AQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQ 768
++ + +I G+ + G +A + M+Q+ V PD T S ++AC+ GD+
Sbjct: 351 T----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 769 V 769
V
Sbjct: 407 V 407
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 2e-13
Identities = 109/505 (21%), Positives = 195/505 (38%), Gaps = 91/505 (18%)
Query: 310 GDMHRARQTFENMRARG-IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT 368
G A + FE + A Y L+ A + + + ++ G E
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428
+ ++ K G A F+E ER N +G II N A AL R+M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 429 EEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIIS---YGC-LINLYTKI 484
E+G DA + +M+ +G+ ++L C ++ C LI++Y+K
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGS----ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 485 GKVSKALEVSKVM-KSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543
G + A V M + + + N ++G+ + ++ ++ G+ D
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSIDQFT 327
Query: 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMP--------IIHGFARAGEMKRA 595
++ +IR F + + E K+ H RT P ++ +++ G M+ A
Sbjct: 328 FSIMIRIFSRLALL--------EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI--- 652
+FD M R I ++NALI G + KA+E+ + M G++PN T+ +
Sbjct: 380 RNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 653 ---------------------------MHGYAS----LGDTGKAFEYFTKLRNEGLELDV 681
MH YA LG G E + +R + V
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMH-YACMIELLGREGLLDEAYAMIRRAPFKPTV 494
Query: 682 FTYEALLKACCKSGRMQSALAVTKEMSAQKI----PRNTFVYNILIDGWARRGDVWEAAD 737
+ ALL AC R+ L + + ++A+K+ P Y +L++ + G EAA
Sbjct: 495 NMWAALLTAC----RIHKNLELGR-LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549
Query: 738 LMQQMKQEGVQPDVHTYTSFINACS 762
+++ +K++G+ S AC+
Sbjct: 550 VVETLKRKGL--------SMHPACT 566
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-11
Identities = 83/378 (21%), Positives = 155/378 (41%), Gaps = 85/378 (22%)
Query: 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361
+++ Y++ GD+ AR F+ M E T + +++ YA+ EEAL +M++ G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421
+ + T+SI++ F+++ E AK+ HA L + I A
Sbjct: 321 VSIDQFTFSIMIRIFSRLAL-------LEHAKQAHAGLIRTGFPLDIVAN---------T 364
Query: 422 ALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLY 481
ALV D Y+ G E VF+R+ ++IS+ LI Y
Sbjct: 365 ALV-------------------DLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGY 401
Query: 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV 541
G+ +KA+E +FE ++ +G+ P+
Sbjct: 402 GNHGRGTKAVE-----------------------------------MFERMIAEGVAPNH 426
Query: 542 VLYNNIIRAFCGMGNMDRAIHIVKEM-QKERHRPTSRTFMPIIHGFARAGEMKRALEIFD 600
V + ++ A G ++ I + M + R +P + + +I R G + A +
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YA 483
Query: 601 MMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASL 659
M+RR+ PTV+ + AL+ + +E ++ L G+ P + + Y +++ Y S
Sbjct: 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK--LYGMGPEKLNNYVVLLNLYNSS 541
Query: 660 GDTGKAFEYFTKLRNEGL 677
G +A + L+ +GL
Sbjct: 542 GRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 469 PSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518
P +++Y LI+ Y K GKV +AL++ MK GIK N+ TYS+LI+G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 644 PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693
P+ TY T++ GY G +A + F +++ G++ +V+TY L+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-11
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 574 PTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621
P T+ +I G+ + G+++ AL++F+ M++ G P V+T++ LI GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-11
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNLP + + + F +FGPI+++ ++ + ++ GF FV ++ + A++A
Sbjct: 1 LFVGNLPPDTTEEDLKDLFSKFGPIESIRIV--RDETGRSKGFAFVEFEDEEDAEKALEA 58
Query: 214 VEFDGVEFHGRVLT 227
+ +G E GR L
Sbjct: 59 L--NGKELGGRELR 70
|
(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-10
Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 43/257 (16%)
Query: 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALE------- 597
N+ +RA C G +++A+ +++ MQ+ R ++ + R E KRA+E
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF----RLCEWKRAVEEGSRVCS 110
Query: 598 ----------------IFDMMRRSGCI------------PTVHTFNALILGLVEKRQMEK 629
+ M R G + + ++N L+ G + ++
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE 170
Query: 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689
A+ + M AG+ P+ +T+ ++ + D + E + G ELDV AL+
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749
K G + SA V M R+ +N +I G+ G+ E +L M++ V P
Sbjct: 231 MYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286
Query: 750 DVHTYTSFINACSKAGD 766
D+ T TS I+AC GD
Sbjct: 287 DLMTITSVISACELLGD 303
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588
PDVV YN +I +C G ++ A+ + EM+K +P T+ +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 8e-10
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728
DV TY L+ CK G+++ AL + EM + I N + Y+ILIDG +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378
P + Y LI Y +EEAL +MK+ GI+ ++ TYSI++ G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|240686 cd12240, RRM_NCBP2, RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 5e-09
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMK 212
++VGNL + + + E F + G IK +I+ G + F K GF FV Y ++A+K
Sbjct: 1 LYVGNLSFYTTEEQIYELFSRCGDIKRIIM--GLDRFTKTPCGFCFVEYYTREDAENAVK 58
Query: 213 AVEFDGVEFHGRVLTVKLDDG 233
+ +G + R++ V D G
Sbjct: 59 YL--NGTKLDDRIIRVDWDAG 77
|
This subfamily corresponds to the RRM of CBP20, also termed nuclear cap-binding protein subunit 2 (NCBP2), or cell proliferation-inducing gene 55 protein, or NCBP-interacting protein 1 (NIP1). CBP20 is the small subunit of the nuclear cap binding complex (CBC), which is a conserved eukaryotic heterodimeric protein complex binding to 5'-capped polymerase II transcripts and plays a central role in the maturation of pre-mRNA and uracil-rich small nuclear RNA (U snRNA). CBP20 is most likely responsible for the binding of capped RNA. It contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and interacts with the second and third domains of CBP80, the large subunit of CBC. . Length = 78 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFC 552
TY+ LI+G+ K +F ++ + G+KP+V Y+ +I C
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-08
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++V NLP + + + EFF +G ++ V L++ N ++ GF FV + P ++A+K
Sbjct: 1 LYVRNLPPSVTEEDLREFFSPYGKVEGVRLVR---NKDRPRGFAFVEFASPEDAEAALKK 57
Query: 214 VEFDGVEFHGRVL 226
+G+ GR L
Sbjct: 58 --LNGLVLDGRTL 68
|
k.a. RRM, RBD, or RNP domain). Length = 69 |
| >gnl|CDD|240830 cd12384, RRM_RBM24_RBM38_like, RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-08
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG LP + ++F QFG I+ ++I K+ G+GFV + SA +
Sbjct: 2 KIFVGGLPYHTTDDSLRKYFSQFGEIEEAVVITD-RQTGKSRGYGFVTFKDKE---SAER 57
Query: 213 AVEFDGVEFHGRVLTVKL 230
A + GR V L
Sbjct: 58 ACKDPNPIIDGRKANVNL 75
|
This subfamily corresponds to the RRM of RBM24 and RBM38 from vertebrate, SUPpressor family member SUP-12 from Caenorhabditis elegans and similar proteins. Both, RBM24 and RBM38, are preferentially expressed in cardiac and skeletal muscle tissues. They regulate myogenic differentiation by controlling the cell cycle in a p21-dependent or -independent manner. RBM24, also termed RNA-binding region-containing protein 6, interacts with the 3'-untranslated region (UTR) of myogenin mRNA and regulates its stability in C2C12 cells. RBM38, also termed CLL-associated antigen KW-5, or HSRNASEB, or RNA-binding region-containing protein 1(RNPC1), or ssDNA-binding protein SEB4, is a direct target of the p53 family. It is required for maintaining the stability of the basal and stress-induced p21 mRNA by binding to their 3'-UTRs. It also binds the AU-/U-rich elements in p63 3'-UTR and regulates p63 mRNA stability and activity. SUP-12 is a novel tissue-specific splicing factor that controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans. All family members contain a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYF 669
+ H N+ + L Q+E+A+++L+ M + +E Y + L + +A E
Sbjct: 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR----LCEWKRAVEEG 105
Query: 670 TKLRNEGLE----LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725
+++ + L L V A+L + G + A V +M R+ F +N+L+ G
Sbjct: 106 SRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGG 161
Query: 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767
+A+ G EA L +M GV+PDV+T+ + C D+
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 1e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQ 568
GLKPDVV YN +I C G +D A+ ++ EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|240778 cd12332, RRM1_p54nrb_like, RNA recognition motif 1 in the p54nrb/PSF/PSP1 family | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++FVGNLPN I + E F ++G + V + N EK GFGF+ D +A K
Sbjct: 3 RLFVGNLPNDITEEEFKELFSKYGEVSEV-----FLNKEK--GFGFIRLD---TRTNAEK 52
Query: 213 A-VEFDGVEFHGRVLTVK 229
A E DG+ GR L V+
Sbjct: 53 AKAELDGIMRKGRQLRVR 70
|
This subfamily corresponds to the RRM1 of the p54nrb/PSF/PSP1 family, including 54 kDa nuclear RNA- and DNA-binding protein (p54nrb or NonO or NMT55), polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF or POMp100), paraspeckle protein 1 (PSP1 or PSPC1), which are ubiquitously expressed and are conserved in vertebrates. p54nrb is a multi-functional protein involved in numerous nuclear processes including transcriptional regulation, splicing, DNA unwinding, nuclear retention of hyperedited double-stranded RNA, viral RNA processing, control of cell proliferation, and circadian rhythm maintenance. PSF is also a multi-functional protein that binds RNA, single-stranded DNA (ssDNA), double-stranded DNA (dsDNA) and many factors, and mediates diverse activities in the cell. PSP1 is a novel nucleolar factor that accumulates within a new nucleoplasmic compartment, termed paraspeckles, and diffusely distributes in the nucleoplasm. The cellular function of PSP1 remains unknown currently. This subfamily also includes some p54nrb/PSF/PSP1 homologs from invertebrate species, such as the Drosophila melanogaster gene no-ontransient A (nonA) encoding puff-specific protein Bj6 (also termed NONA) and Chironomus tentans hrp65 gene encoding protein Hrp65. D. melanogaster NONA is involved in eye development and behavior, and may play a role in circadian rhythm maintenance, similar to vertebrate p54nrb. C. tentans Hrp65 is a component of nuclear fibers associated with ribonucleoprotein particles in transit from the gene to the nuclear pore. All family members contain a DBHS domain (for Drosophila behavior, human splicing), which comprises two conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a charged protein-protein interaction module. PSF has an additional large N-terminal domain that differentiates it from other family members. . Length = 71 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-07
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342
+++ Y ++G + A + F M+ RGI+P ++ Y+ LI
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|240859 cd12413, RRM1_RBM28_like, RNA recognition motif 1 in RNA-binding protein 28 (RBM28) and similar proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-07
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV NLP + EFF + GPIK ++K + +K GFG+V + A E+ A +A
Sbjct: 2 LFVRNLPYDTTDEQLEEFFSEVGPIKRCFVVKDKGS-KKCRGFGYVTF---ALEEDAKRA 57
Query: 214 VE-FDGVEFHGRVLTVKL 230
+E +F GR + V+
Sbjct: 58 LEEKKKTKFGGRKIHVEF 75
|
This subfamily corresponds to the RRM1 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 79 |
| >gnl|CDD|240675 cd12229, RRM_G3BP, RNA recognition motif (RRM) in ras GTPase-activating protein-binding protein G3BP1, G3BP2 and similar proteins | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-07
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAA 206
++FVGNLP+ I + + EFF++FG + V I KG N FGFV++D P A
Sbjct: 5 QLFVGNLPHDITEDELKEFFKEFGNVLEVRINSKGGGGRLPN--FGFVVFDDPEA 57
|
This subfamily corresponds to the RRM domain in the G3BP family of RNA-binding and SH3 domain-binding proteins. G3BP acts at the level of RNA metabolism in response to cell signaling, possibly as RNA transcript stabilizing factors or an RNase. Members include G3BP1, G3BP2 and similar proteins. These proteins associate directly with the SH3 domain of GTPase-activating protein (GAP), which functions as an inhibitor of Ras. They all contain an N-terminal nuclear transfer factor 2 (NTF2)-like domain, an acidic domain, a domain containing PXXP motif(s), an RNA recognition motif (RRM), and an Arg-Gly-rich region (RGG-rich region, or arginine methylation motif). Length = 81 |
| >gnl|CDD|240793 cd12347, RRM_PPIE, RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-07
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++VG L + + ++ F FG IK++ + Y +K+ GF FV ++ P +A+
Sbjct: 1 LYVGGLAEEVDEKVLHAAFIPFGDIKDIQIPLDYET-QKHRGFAFVEFEEPEDAAAAID- 58
Query: 214 VEFDGVEFHGRVLTV 228
+ E GR + V
Sbjct: 59 -NMNESELFGRTIRV 72
|
This subfamily corresponds to the RRM of Cyp33, also termed peptidyl-prolyl cis-trans isomerase E (PPIase E), or cyclophilin E, or rotamase E. Cyp33 is a nuclear RNA-binding cyclophilin with an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal PPIase domain. Cyp33 possesses RNA-binding activity and preferentially binds to polyribonucleotide polyA and polyU, but hardly to polyG and polyC. It binds specifically to mRNA, which can stimulate its PPIase activity. Moreover, Cyp33 interacts with the third plant homeodomain (PHD3) zinc finger cassette of the mixed lineage leukemia (MLL) proto-oncoprotein and a poly-A RNA sequence through its RRM domain. It further mediates downregulation of the expression of MLL target genes HOXC8, HOXA9, CDKN1B, and C-MYC, in a proline isomerase-dependent manner. Cyp33 also possesses a PPIase activity that catalyzes cis-trans isomerization of the peptide bond preceding a proline, which has been implicated in the stimulation of folding and conformational changes in folded and unfolded proteins. The PPIase activity can be inhibited by the immunosuppressive drug cyclosporin A. . Length = 73 |
| >gnl|CDD|240744 cd12298, RRM3_Prp24, RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-IKGYNNFEK-NVGFGFVIYDGPAAEKSA 210
+I+V NL + + + F +FG ++++ + K + N GF FV + + SA
Sbjct: 2 EIYVRNLDFKLDEDDLRGIFSKFGEVESIRIPKKQDEKQGRLNNGFAFVTFKDAS---SA 58
Query: 211 MKAVEFDGVEFHGRVLTVKL 230
A++ +G E GR ++V L
Sbjct: 59 ENALQLNGTELGGRKISVSL 78
|
This subfamily corresponds to the RRM3 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 78 |
| >gnl|CDD|240782 cd12336, RRM_RBM7_like, RNA recognition motif in RNA-binding protein 7 (RBM7) and similar proteins | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNL + + ++ E F Q GP++ V + K N K+ F FV + + A++
Sbjct: 4 LFVGNLDARVTEEILYELFLQAGPLEGVKIPKDPNGKPKS--FAFVTFKHEVSVPYAIQL 61
Query: 214 VEFDGVEFHGRVLTVK 229
+G+ GR L +K
Sbjct: 62 --LNGIRLFGRELRIK 75
|
This subfamily corresponds to the RRM of RBM7, RBM11 and their eukaryotic homologous. RBM7 is an ubiquitously expressed pre-mRNA splicing factor that enhances messenger RNA (mRNA) splicing in a cell-specific manner or in a certain developmental process, such as spermatogenesis. It interacts with splicing factors SAP145 (the spliceosomal splicing factor 3b subunit 2) and SRp20, and may play a more specific role in meiosis entry and progression. Together with additional testis-specific RNA-binding proteins, RBM7 may regulate the splicing of specific pre-mRNA species that are important in the meiotic cell cycle. RBM11 is a novel tissue-specific splicing regulator that is selectively expressed in brain, cerebellum and testis, and to a lower extent in kidney. It is localized in the nucleoplasm and enriched in SRSF2-containing splicing speckles. It may play a role in the modulation of alternative splicing during neuron and germ cell differentiation. Both, RBM7 and RBM11, contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a region lacking known homology at the C-terminus. The RRM is responsible for RNA binding, whereas the C-terminal region permits nuclear localization and homodimerization. . Length = 75 |
| >gnl|CDD|240895 cd12449, RRM_CIRBP_RBM3, RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-07
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
GK+F+G L + + + F ++G I V+++K +++ GFGFV ++ P K AM
Sbjct: 1 GKLFIGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET-QRSRGFGFVTFENPDDAKDAM 59
Query: 212 KAVEFDGVEFHGRVLTV 228
A+ +G GR + V
Sbjct: 60 MAM--NGKSVDGRQIRV 74
|
This subfamily corresponds to the RRM domain of two structurally related heterogenous nuclear ribonucleoproteins, CIRBP (also termed CIRP or A18 hnRNP) and RBM3 (also termed RNPL), both of which belong to a highly conserved cold shock proteins family. The cold shock proteins can be induced after exposure to a moderate cold-shock and other cellular stresses such as UV radiation and hypoxia. CIRBP and RBM3 may function in posttranscriptional regulation of gene expression by binding to different transcripts, thus allowing the cell to response rapidly to environmental signals. However, the kinetics and degree of cold induction are different between CIRBP and RBM3. Tissue distribution of their expression is different. CIRBP and RBM3 may be differentially regulated under physiological and stress conditions and may play distinct roles in cold responses of cells. CIRBP, also termed glycine-rich RNA-binding protein CIRP, is localized in the nucleus and mediates the cold-induced suppression of cell cycle progression. CIRBP also binds DNA and possibly serves as a chaperone that assists in the folding/unfolding, assembly/disassembly and transport of various proteins. RBM3 may enhance global protein synthesis and the formation of active polysomes while reducing the levels of ribonucleoprotein complexes containing microRNAs. RBM3 may also serve to prevent the loss of muscle mass by its ability to decrease cell death. Furthermore, RBM3 may be essential for cell proliferation and mitosis. Both, CIRBP and RBM3, contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), that is involved in RNA binding, and C-terminal glycine-rich domain (RGG motif) that probably enhances RNA-binding via protein-protein and/or protein-RNA interactions. Like CIRBP, RBM3 can also bind to both RNA and DNA via its RRM domain. . Length = 80 |
| >gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-07
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP-AAEK--SA 210
+F+ NLP + + E F QFG +K ++K + G FV + +A+K A
Sbjct: 3 VFIRNLPFDATEEELKELFSQFGEVKYARIVK-DKLTGHSKGTAFVKFKTKESAQKCLEA 61
Query: 211 MKAVEFDGVEFHGRVLTVKL 230
E G+ GR L V L
Sbjct: 62 ADNAEDSGLSLDGRRLIVTL 81
|
This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82 |
| >gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (121), Expect = 1e-06
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 110 PPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVM 169
+++E + E SS + + + +FVGNLP + + +
Sbjct: 74 EENEREMEEQNDGERGYTKEFEEELFRSSESPKSRQKSKEENNTLFVGNLPYDVTEEDLR 133
Query: 170 EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
E F++FGP+K V + K+ GF FV ++ + + A++ E +G E GR L V+
Sbjct: 134 ELFKKFGPVKRVR-LVRDRETGKSRGFAFVEFESEESAEKAIE--ELNGKELEGRPLRVQ 190
Query: 230 LD 231
Sbjct: 191 KA 192
|
Length = 306 |
| >gnl|CDD|240896 cd12450, RRM1_NUCLs, RNA recognition motif 1 found in nucleolin-like proteins mainly from plants | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNL ++ + EFF++ G + +V + + + K GFG V + A E+ A KA
Sbjct: 2 LFVGNLSWSAEQDDLEEFFKECGEVVDVRIAQDDDGRSK--GFGHVEF---ATEEGAQKA 56
Query: 214 VEFDGVEFHGRVLTVKL 230
+E G E GR + V L
Sbjct: 57 LEKSGEELLGREIRVDL 73
|
This subfamily corresponds to the RRM1 of a group of plant nucleolin-like proteins, including nucleolin 1 (also termed protein nucleolin like 1) and nucleolin 2 (also termed protein nucleolin like 2, or protein parallel like 1). They play roles in the regulation of ribosome synthesis and in the growth and development of plants. Like yeast nucleolin, nucleolin-like proteins possess two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 77 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (118), Expect = 2e-06
Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 4/227 (1%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTL-HVYTNLIHAYAVGRDMEEALSCVRKM 357
L+ + G + A + E + P L NL EEAL + K
Sbjct: 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 358 KEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN--AIIYGNIIYAQCQTR 415
+ L + +G ++G+ E A +E+A E LN A +
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 416 NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYG 475
E A L+ + D + + Y +G E+ L +E+ E + +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALY 240
Query: 476 CLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDW 522
L L ++G+ +ALE + ++L+ L+
Sbjct: 241 NLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELL 287
|
Length = 291 |
| >gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF-EKNVGFGFVIYDGPAAEKSAM 211
++VGNLP + + + + F QFG + + +I + ++ GFGFV + +A+
Sbjct: 1 NLYVGNLPYNVTEEDLKDLFGQFGEVTSARVI--TDRETGRSRGFGFVEMETAEEANAAI 58
Query: 212 KAVEFDGVEFHGRVLTV 228
+ +G +F GR LTV
Sbjct: 59 EK--LNGTDFGGRTLTV 73
|
This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. . Length = 78 |
| >gnl|CDD|240828 cd12382, RRM_RBMX_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKS 209
K+FV L + + F +FG ++ V+L+K + E GFGFV ++ +
Sbjct: 2 NKLFVSGLSTRTTEKELEALFSKFGRVEEVLLMK---DPETGESRGFGFVTFESVEDADA 58
Query: 210 AMKAVEFDGVEFHGRVLTV 228
A++ + +G E GRV+ V
Sbjct: 59 AIR--DLNGKELEGRVIKV 75
|
This subfamily corresponds to the RRM domain of hnRNP G, also termed glycoprotein p43 or RBMX, an RNA-binding motif protein located on the X chromosome. It is expressed ubiquitously and has been implicated in the splicing control of several pre-mRNAs. Moreover, hnRNP G may function as a regulator of transcription for SREBP-1c and GnRH1. Research has shown that hnRNP G may also act as a tumor-suppressor since it upregulates the Txnip gene and promotes the fidelity of DNA end-joining activity. In addition, hnRNP G appears to play a critical role in proper neural development of zebrafish and frog embryos. The family also includes several paralogs of hnRNP G, such as hRBMY and hnRNP G-T (also termed RNA-binding motif protein, X-linked-like-2). Both, hRBMY and hnRNP G-T, are exclusively expressed in testis and critical for male fertility. Like hnRNP G, hRBMY and hnRNP G-T interact with factors implicated in the regulation of pre-mRNA splicing, such as hTra2-beta1 and T-STAR. Although members in this family share a high conserved N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), they appear to recognize different RNA targets. For instance, hRBMY interacts specifically with a stem-loop structure in which the loop is formed by the sequence CA/UCAA. In contrast, hnRNP G associates with single stranded RNA sequences containing a CCA/C motif. In addition to the RRM, hnRNP G contains a nascent transcripts targeting domain (NTD) in the middle region and a novel auxiliary RNA-binding domain (RBD) in its C-terminal region. The C-terminal RBD exhibits distinct RNA binding specificity, and would play a critical role in the regulation of alternative splicing by hnRNP G. . Length = 80 |
| >gnl|CDD|240833 cd12387, RRM3_hnRNPM_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein M (hnRNP M) and similar proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 154 IFVGNLP---NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
IFV NLP W + + FR+ G + + + K GFG V+++ P + A
Sbjct: 1 IFVRNLPFSVTWQD---LKDLFRECGNVLRADVKTDNDGRSK--GFGTVLFESP---EDA 52
Query: 211 MKAVE-FDGVEFHGRVLTVK 229
+A+E F+G + GR L V+
Sbjct: 53 QRAIEMFNGYDLEGRELEVR 72
|
This subfamily corresponds to the RRM3 of heterogeneous nuclear ribonucleoprotein M (hnRNP M), myelin expression factor 2 (MEF-2 or MyEF-2 or MST156) and similar proteins. hnRNP M is pre-mRNA binding protein that may play an important role in the pre-mRNA processing. It also preferentially binds to poly(G) and poly(U) RNA homopolymers. hnRNP M is able to interact with early spliceosomes, further influencing splicing patterns of specific pre-mRNAs. hnRNP M functions as the receptor of carcinoembryonic antigen (CEA) that contains the penta-peptide sequence PELPK signaling motif. In addition, hnRNP M and another splicing factor Nova-1 work together as dopamine D2 receptor (D2R) pre-mRNA-binding proteins. They regulate alternative splicing of D2R pre-mRNA in an antagonistic manner. hnRNP M contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an unusual hexapeptide-repeat region rich in methionine and arginine residues (MR repeat motif). MEF-2 is a sequence-specific single-stranded DNA (ssDNA) binding protein that binds specifically to ssDNA derived from the proximal (MB1) element of the myelin basic protein (MBP) promoter and represses transcription of the MBP gene. MEF-2 shows high sequence homology with hnRNP M. It also contains three RRMs, which may be responsible for its ssDNA binding activity. . Length = 72 |
| >gnl|CDD|240677 cd12231, RRM2_U2AF65, RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK-GYNNFEKNVGFGFVIYDGPAAEKSAM 211
KIF+G LPN++ + V E FG +K L+K K G+ F Y P+
Sbjct: 2 KIFIGGLPNYLSEDQVKELLESFGKLKAFNLVKDSATGLSK--GYAFCEYLDPSV---TD 56
Query: 212 KAVE-FDGVEFHGRVLTVK 229
+A+ +G++ + LTV+
Sbjct: 57 QAIAGLNGMQLGDKKLTVQ 75
|
This subfamily corresponds to the RRM2 of U2AF65 and dU2AF50. U2AF65, also termed U2AF2, is the large subunit of U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF), which has been implicated in the recruitment of U2 snRNP to pre-mRNAs and is a highly conserved heterodimer composed of large and small subunits. U2AF65 specifically recognizes the intron polypyrimidine tract upstream of the 3' splice site and promotes binding of U2 snRNP to the pre-mRNA branchpoint. U2AF65 also plays an important role in the nuclear export of mRNA. It facilitates the formation of a messenger ribonucleoprotein export complex, containing both the NXF1 receptor and the RNA substrate. Moreover, U2AF65 interacts directly and specifically with expanded CAG RNA, and serves as an adaptor to link expanded CAG RNA to NXF1 for RNA export. U2AF65 contains an N-terminal RS domain rich in arginine and serine, followed by a proline-rich segment and three C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The N-terminal RS domain stabilizes the interaction of U2 snRNP with the branch point (BP) by contacting the branch region, and further promotes base pair interactions between U2 snRNA and the BP. The proline-rich segment mediates protein-protein interactions with the RRM domain of the small U2AF subunit (U2AF35 or U2AF1). The RRM1 and RRM2 are sufficient for specific RNA binding, while RRM3 is responsible for protein-protein interactions. The family also includes Splicing factor U2AF 50 kDa subunit (dU2AF50), the Drosophila ortholog of U2AF65. dU2AF50 functions as an essential pre-mRNA splicing factor in flies. It associates with intronless mRNAs and plays a significant and unexpected role in the nuclear export of a large number of intronless mRNAs. Length = 77 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 110 PPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVM 169
P P + Q +D + E S+++ S + +I++GNLP ++ + +
Sbjct: 262 PVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDS--------KDRIYIGNLPLYLGEDQIK 313
Query: 170 EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
E FG +K LIK + G+ F Y P+ A+ A+ +G + L V+
Sbjct: 314 ELLESFGDLKAFNLIKDIAT-GLSKGYAFCEYKDPSVTDVAIAAL--NGKDTGDNKLHVQ 370
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|240688 cd12242, RRM_SLIRP, RNA recognition motif found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG----FGFVIYDGPAAEK 208
K+FVGNLP + + E+F QFG +K+ + F+K G +GFV + +
Sbjct: 1 KLFVGNLPWTVGSKELKEYFSQFGKVKSCNVP-----FDKETGLSKGYGFVSFSSRDGLE 55
Query: 209 SAMKAVEFDGVEFHGRVLTVK 229
+A++ G L V+
Sbjct: 56 NALQ---KQKHILEGNKLQVQ 73
|
This subfamily corresponds to the RRM of SLIRP, a widely expressed small steroid receptor RNA activator (SRA) binding protein, which binds to STR7, a functional substructure of SRA. SLIRP is localized predominantly to the mitochondria and plays a key role in modulating several nuclear receptor (NR) pathways. It functions as a co-repressor to repress SRA-mediated nuclear receptor coactivation. It modulates SHARP- and SKIP-mediated co-regulation of NR activity. SLIRP contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is required for SLIRP's corepression activities. . Length = 73 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-06
Identities = 34/147 (23%), Positives = 39/147 (26%), Gaps = 17/147 (11%)
Query: 8 SAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNL-----------HRPP 56
A A P P S PPPP PP L RPP
Sbjct: 2808 PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867
Query: 57 KSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQL 116
S + P P L S + S + + PP P PPPP Q
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARPA---VSRSTESFALP---PDQPERPPQPQAPPPPQPQP 2921
Query: 117 QEPQSQGNDEIPDAENRSPSSSLATSQ 143
Q P P R T+
Sbjct: 2922 QPPPPPQPQPPPPPPPRPQPPLAPTTD 2948
|
Length = 3151 |
| >gnl|CDD|240826 cd12380, RRM3_I_PABPs, RNA recognition motif 3 found in type I polyadenylate-binding proteins | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-06
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++V NL + + E F ++G I + ++K K+ GFGFV ++ A A KA
Sbjct: 4 VYVKNLGEDMDDEKLKELFGKYGKITSAKVMKDDEG--KSKGFGFVNFENHEA---AQKA 58
Query: 214 VE-FDGVEFHGRVLTVKLDDGRRLK 237
VE +G E +G+ L V GR K
Sbjct: 59 VEELNGKEVNGKKLYV----GRAQK 79
|
This subfamily corresponds to the RRM3 of type I poly(A)-binding proteins (PABPs), highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. The family represents type I polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 1 (PABP-1 or PABPC1), polyadenylate-binding protein 3 (PABP-3 or PABPC3), polyadenylate-binding protein 4 (PABP-4 or APP-1 or iPABP), polyadenylate-binding protein 5 (PABP-5 or PABPC5), polyadenylate-binding protein 1-like (PABP-1-like or PABPC1L), polyadenylate-binding protein 1-like 2 (PABPC1L2 or RBM32), polyadenylate-binding protein 4-like (PABP-4-like or PABPC4L), yeast polyadenylate-binding protein, cytoplasmic and nuclear (PABP or ACBP-67), and similar proteins. PABP-1 is an ubiquitously expressed multifunctional protein that may play a role in 3' end formation of mRNA, translation initiation, mRNA stabilization, protection of poly(A) from nuclease activity, mRNA deadenylation, inhibition of mRNA decapping, and mRNP maturation. Although PABP-1 is thought to be a cytoplasmic protein, it is also found in the nucleus. PABP-1 may be involved in nucleocytoplasmic trafficking and utilization of mRNP particles. PABP-1 contains four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a less well conserved linker region, and a proline-rich C-terminal conserved domain (CTD). PABP-3 is a testis-specific poly(A)-binding protein specifically expressed in round spermatids. It is mainly found in mammalian and may play an important role in the testis-specific regulation of mRNA homeostasis. PABP-3 shows significant sequence similarity to PABP-1. However, it binds to poly(A) with a lower affinity than PABP-1. PABP-1 possesses an A-rich sequence in its 5'-UTR and allows binding of PABP and blockage of translation of its own mRNA. In contrast, PABP-3 lacks the A-rich sequence in its 5'-UTR. PABP-4 is an inducible poly(A)-binding protein (iPABP) that is primarily localized to the cytoplasm. It shows significant sequence similarity to PABP-1 as well. The RNA binding properties of PABP-1 and PABP-4 appear to be identical. PABP-5 is encoded by PABPC5 gene within the X-specific subinterval, and expressed in fetal brain and in a range of adult tissues in mammalian, such as ovary and testis. It may play an important role in germ cell development. Moreover, unlike other PABPs, PABP-5 contains only four RRMs, but lacks both the linker region and the CTD. PABP-1-like and PABP-1-like 2 are the orthologs of PABP-1. PABP-4-like is the ortholog of PABP-5. Their cellular functions remain unclear. The family also includes the yeast PABP, a conserved poly(A) binding protein containing poly(A) tails that can be attached to the 3'-ends of mRNAs. The yeast PABP and its homologs may play important roles in the initiation of translation and in mRNA decay. Like vertebrate PABP-1, the yeast PABP contains four RRMs, a linker region, and a proline-rich CTD as well. The first two RRMs are mainly responsible for specific binding to poly(A). The proline-rich region may be involved in protein-protein interactions. . Length = 80 |
| >gnl|CDD|240819 cd12373, RRM_SRSF3_like, RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-06
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K++VGNL K + + F ++GP+++V + + GF FV ++ P A
Sbjct: 1 KVYVGNLGPRATKRELEDEFEKYGPLRSVWVAR------NPPGFAFVEFEDPR---DAED 51
Query: 213 AV-EFDGVEFHGRVLTVKL 230
AV DG G + V+L
Sbjct: 52 AVRALDGRRICGNRVRVEL 70
|
This subfamily corresponds to the RRM of two serine/arginine (SR) proteins, serine/arginine-rich splicing factor 3 (SRSF3) and serine/arginine-rich splicing factor 7 (SRSF7). SRSF3, also termed pre-mRNA-splicing factor SRp20, modulates alternative splicing by interacting with RNA cis-elements in a concentration- and cell differentiation-dependent manner. It is also involved in termination of transcription, alternative RNA polyadenylation, RNA export, and protein translation. SRSF3 is critical for cell proliferation, and tumor induction and maintenance. It can shuttle between the nucleus and cytoplasm. SRSF7, also termed splicing factor 9G8, plays a crucial role in both constitutive splicing and alternative splicing of many pre-mRNAs. Its localization and functions are tightly regulated by phosphorylation. SRSF7 is predominantly present in the nuclear and can shuttle between nucleus and cytoplasm. It cooperates with the export protein, Tap/NXF1, helps mRNA export to the cytoplasm, and enhances the expression of unspliced mRNA. Moreover, SRSF7 inhibits tau E10 inclusion through directly interacting with the proximal downstream intron of E10, a clustering region for frontotemporal dementia with Parkinsonism (FTDP) mutations. Both SRSF3 and SRSF7 contain a single N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal RS domain rich in serine-arginine dipeptides. The RRM domain is involved in RNA binding, and the RS domain has been implicated in protein shuttling and protein-protein interactions. . Length = 73 |
| >gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-06
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK-GYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FVGNLP I++ + + F G ++ V +++ K GFG+V++ S
Sbjct: 2 VFVGNLPFDIEEEELRKHFEDCGDVEAVRIVRDRKTGIGK--GFGYVLFKTKD---SVAL 56
Query: 213 AVEFDGVEFHGRVLTVK 229
A++ +G++ GR + VK
Sbjct: 57 ALKLNGIKLKGRKIRVK 73
|
This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 6e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 716 TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749
YN L+ A+ GD A ++++MK G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 577 RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611
T+ +I G +AG ++ ALE+F M+ G P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|240838 cd12392, RRM2_SART3, RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+FV LP + K + + F++ G +K+V L+ + K G +V Y+ E SA +
Sbjct: 4 KLFVSGLPFSVTKEELEKLFKKHGVVKSVRLVTNRSGKPK--GLAYVEYEN---ESSASQ 58
Query: 213 AV-EFDGVEFHGRVLTVKL 230
AV + DG E + ++V +
Sbjct: 59 AVLKMDGTEIKEKTISVAI 77
|
This subfamily corresponds to the RRM2 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), is an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 81 |
| >gnl|CDD|241118 cd12674, RRM1_Nop4p, RNA recognition motif 1 in yeast nucleolar protein 4 (Nop4p) and similar proteins | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-06
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV NL + + + +FF PIK+ +++ ++ G+GFV + + A+
Sbjct: 2 LFVRNLAFSVTQEDLTDFFSDVAPIKHAVVVTDPET-GESRGYGFVTFAMLEDAQEALA- 59
Query: 214 VEFDGVEFHGRVLTVKLD 231
+ + HGR+L +LD
Sbjct: 60 -KLKNKKLHGRIL--RLD 74
|
This subgroup corresponds to the RRM1 of Nop4p (also known as Nop77p), encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 79 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 7e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743
+ + YN LIDG R G V EA +L+ +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|241058 cd12614, RRM1_PUB1, RNA recognition motif 1 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-06
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 20/93 (21%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++VGNL + + ++ + F+ GP++NV +I NN K V +GFV Y + A++
Sbjct: 1 LYVGNLDPRVTEDILKQIFQVGGPVQNVKIIPDKNN--KGVNYGFVEYHQSHDAEIALQT 58
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARW 246
+ +GR+++N E+R W
Sbjct: 59 L-----------------NGRQIENN-EIRVNW 73
|
This subgroup corresponds to the RRM1 of yeast protein PUB1, also termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein. PUB1 has been identified as both, a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP), which may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. It is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA); however, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 74 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 34/148 (22%), Positives = 48/148 (32%), Gaps = 19/148 (12%)
Query: 8 SAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPP-------PPSPTPPEPHNLHRPPKSSR 60
++P P PA P P + +P PP+P PP P + +R
Sbjct: 2731 ASPALPAAPAP-----PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTR 2785
Query: 61 PTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPP-----PPPPPAEQ 115
P + + ++ P+ +A +S P PPP PPPP
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 116 LQEPQSQGNDEIP--DAENRSPSSSLAT 141
G P D R PS S A
Sbjct: 2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAA 2873
|
Length = 3151 |
| >gnl|CDD|240844 cd12398, RRM_CSTF2_RNA15_like, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPAAEKS 209
+FVGN+P + ++E F + GP+ + L+ +++ G+GF ++ S
Sbjct: 1 VFVGNIPYDATEEQLIEIFSEVGPVVSFRLV-----TDRDTGKPKGYGFCEFEDIETAAS 55
Query: 210 AMKAVEFDGVEFHGRVLTV 228
A++ +G EF+GR L V
Sbjct: 56 AIR--NLNGYEFNGRALRV 72
|
This subfamily corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. The family also includes yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins. RNA15 is a core subunit of cleavage factor IA (CFIA), an essential transcriptional 3'-end processing factor from Saccharomyces cerevisiae. RNA recognition by CFIA is mediated by an N-terminal RRM, which is contained in the RNA15 subunit of the complex. The RRM of RNA15 has a strong preference for GU-rich RNAs, mediated by a binding pocket that is entirely conserved in both yeast and vertebrate RNA15 orthologs. Length = 75 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 39 PPPPSPTPPEP---HNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLR 95
PP P+P P EP RP + R + P + P+PPS
Sbjct: 2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD------RGDPRGPAPPS-------- 2615
Query: 96 LSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSS 138
P PPPP P+ EP +P E +
Sbjct: 2616 -PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657
|
Length = 3151 |
| >gnl|CDD|240784 cd12338, RRM1_SRSF1_like, RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+I+VGNLP I++ + + F ++GPIK + L N + F FV ++ P + A++
Sbjct: 1 RIYVGNLPGDIRERDIEDLFYKYGPIKAIDL----KNRRRGPPFAFVEFEDPRDAEDAVR 56
Query: 213 AVEFDGVEFHGRVLTVKL 230
DG +F G L V+
Sbjct: 57 GR--DGYDFDGYRLRVEF 72
|
This subgroup corresponds to the RRM1 in three serine/arginine (SR) proteins: serine/arginine-rich splicing factor 1 (SRSF1 or ASF-1), serine/arginine-rich splicing factor 9 (SRSF9 or SRp30C), and plant pre-mRNA-splicing factor SF2 (SR1). SRSF1 is a shuttling SR protein involved in constitutive and alternative splicing, nonsense-mediated mRNA decay (NMD), mRNA export and translation. It also functions as a splicing-factor oncoprotein that regulates apoptosis and proliferation to promote mammary epithelial cell transformation. SRSF9 has been implicated in the activity of many elements that control splice site selection, the alternative splicing of the glucocorticoid receptor beta in neutrophils and in the gonadotropin-releasing hormone pre-mRNA. It can also interact with other proteins implicated in alternative splicing, including YB-1, rSLM-1, rSLM-2, E4-ORF4, Nop30, and p32. Both, SRSF1 and SRSF9, contain two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RS domains rich in serine-arginine dipeptides. In contrast, SF2 contains two N-terminal RRMs and a C-terminal PSK domain rich in proline, serine and lysine residues. . Length = 72 |
| >gnl|CDD|240811 cd12365, RRM_RNPS1, RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-05
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 154 IFVGNL-PNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+ VG L N K HL E F +G +K+V + I N + G+ +V ++ P + A+
Sbjct: 1 LHVGKLTRNVNKDHL-KEIFSNYGTVKDVDLPIDREVNLPR--GYAYVEFESPEDAEKAI 57
Query: 212 KAVEFDGVEFHGRVLTVK 229
K + DG + G+ +TV+
Sbjct: 58 KHM--DGGQIDGQEVTVE 73
|
This subfamily corresponds to the RRM of RNPS1 and its eukaryotic homologs. RNPS1, also termed RNA-binding protein prevalent during the S phase, or SR-related protein LDC2, was originally characterized as a general pre-mRNA splicing activator, which activates both constitutive and alternative splicing of pre-mRNA in vitro.It has been identified as a protein component of the splicing-dependent mRNP complex, or exon-exon junction complex (EJC), and is directly involved in mRNA surveillance. Furthermore, RNPS1 is a splicing regulator whose activator function is controlled in part by CK2 (casein kinase II) protein kinase phosphorylation. It can also function as a squamous-cell carcinoma antigen recognized by T cells-3 (SART3)-binding protein, and is involved in the regulation of mRNA splicing. RNPS1 contains an N-terminal serine-rich (S) domain, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and the C-terminal arginine/serine/proline-rich (RS/P) domain. . Length = 73 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 605 SGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 637
G P V T+N LI GL ++++A+E+LDEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|241023 cd12579, RRM2_hnRNPA0, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0) and similar proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-05
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY-DGPAAEKSAM 211
K+FVG L + + + E F QFGP++ +I +K GFGFV + + +A+K+A+
Sbjct: 1 KLFVGGLKGDVGEGDLTEHFSQFGPVEKAEVIADKQTGKKR-GFGFVYFQNHDSADKAAV 59
Query: 212 KAVEFDGVEFH 222
V+F + H
Sbjct: 60 --VKFHPINGH 68
|
This subgroup corresponds to the RRM2 of hnRNP A0, a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A0 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 80 |
| >gnl|CDD|240789 cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-05
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+FVGNLP+ + F ++G + ++K Y GFV + + A+K
Sbjct: 1 KLFVGNLPDATTSEELRALFEKYGTVTECDVVKNY---------GFVHMEEEEDAEDAIK 51
Query: 213 AVEFDGVEFHGRVLTVK 229
A+ +G EF G+ + V+
Sbjct: 52 AL--NGYEFMGKRINVE 66
|
This subfamily corresponds to the RRM in CoAA (also known as RBM14 or PSP2) and RNA-binding protein 4 (RBM4). CoAA is a heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein identified as a nuclear receptor coactivator. It mediates transcriptional coactivation and RNA splicing effects in a promoter-preferential manner, and is enhanced by thyroid hormone receptor-binding protein (TRBP). CoAA contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a TRBP-interacting domain. RBM4 is a ubiquitously expressed splicing factor with two isoforms, RBM4A (also known as Lark homolog) and RBM4B (also known as RBM30), which are very similar in structure and sequence. RBM4 may also function as a translational regulator of stress-associated mRNAs as well as play a role in micro-RNA-mediated gene regulation. RBM4 contains two N-terminal RRMs, a CCHC-type zinc finger, and three alanine-rich regions within their C-terminal regions. This family also includes Drosophila RNA-binding protein lark (Dlark), a homolog of human RBM4. It plays an important role in embryonic development and in the circadian regulation of adult eclosion. Dlark shares high sequence similarity with RBM4 at the N-terminal region. However, Dlark has three proline-rich segments instead of three alanine-rich segments within the C-terminal region. . Length = 66 |
| >gnl|CDD|240776 cd12330, RRM2_Hrp1p, RNA recognition motif 2 in yeast nuclear polyadenylated RNA-binding protein 4 (Hrp1p or Nab4p) and similar proteins | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG LP + + E+F QFG + + L++ ++ ++ GFGFV +D +A +
Sbjct: 1 KIFVGGLPPDVTEEEFKEYFSQFGKVVDAQLMQDHDT-GRSRGFGFVTFDSESAVERVFS 59
Query: 213 AVEFDGVEFHGRVLTVK 229
A +E G+ + VK
Sbjct: 60 A---GMLELGGKQVEVK 73
|
This subfamily corresponds to the RRM1 of Hrp1p and similar proteins. Hrp1p or Nab4p, also termed cleavage factor IB (CFIB), is a sequence-specific trans-acting factor that is essential for mRNA 3'-end formation in yeast Saccharomyces cerevisiae. It can be UV cross-linked to RNA and specifically recognizes the (UA)6 RNA element required for both, the cleavage and poly(A) addition steps. Moreover, Hrp1p can shuttle between the nucleus and the cytoplasm, and play an additional role in the export of mRNAs to the cytoplasm. Hrp1p also interacts with Rna15p and Rna14p, two components of CF1A. In addition, Hrp1p functions as a factor directly involved in modulating the activity of the nonsense-mediated mRNA decay (NMD) pathway; it binds specifically to a downstream sequence element (DSE)-containing RNA and interacts with Upf1p, a component of the surveillance complex, further triggering the NMD pathway. Hrp1p contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an arginine-glycine-rich region harboring repeats of the sequence RGGF/Y. . Length = 75 |
| >gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 77 SATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGN-----DEIPDAE 131
S T+ SPP+ PPPPPPPPPPP LQ+ S + A
Sbjct: 166 STTSFPISPPTE-------EPVLEVPPPPPPPPPPPPPSLQQSTSAIDLIKERKGQRSAA 218
Query: 132 NRSPSSSLATSQE 144
++ S S E
Sbjct: 219 GKTLVLSKPKSPE 231
|
In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707
TY ++ +L + + + G E D + +L K G + A + EM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767
RN + +I G G+ EA L ++M ++G + T+ + A + G
Sbjct: 185 PE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 768 QV 769
+
Sbjct: 241 RA 242
|
Length = 697 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (107), Expect = 4e-05
Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 5/258 (1%)
Query: 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE-VSKVMKSSGIKHNMK 507
+ + L + + ++ + L +G++++ALE + + ++
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKP-DVVLYNNIIRAFCGMGNMDRAIHIVKE 566
+L LKL + E + L P N+ +G + A+ ++++
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626
P + + G+ + ALE+++ L LG + +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 627 --MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684
E+A+E+L++ + + Y LG +A EY+ K +
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEAL 239
Query: 685 EALLKACCKSGRMQSALA 702
L + GR + AL
Sbjct: 240 YNLALLLLELGRYEEALE 257
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS 576
V YN +I C G ++ A+ + KEM++ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE 646
T+N LI GL + ++E+A+E+ EM GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGV 747
YN LI G+ + G + EA +L ++MK++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 1/105 (0%)
Query: 40 PPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSK 99
PPPSP P L P + P A+ S + + +++
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSSPEETAR 184
Query: 100 LSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQE 144
PP PPP P+ A SP+ + S
Sbjct: 185 APSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229
|
Length = 1352 |
| >gnl|CDD|240762 cd12316, RRM3_RBM19_RRM2_MRD1, RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and RNA recognition motif 2 found in multiple RNA-binding domain-containing protein 1 (MRD1) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-05
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++FV NLP + + E F FG I V + + +++ GF FV + P A
Sbjct: 1 RLFVRNLPFTTTEEELRELFEAFGEISEVHLPLD--KETKRSKGFAFVSFMFPEHAVKAY 58
Query: 212 KAVEFDGVEFHGRVLTV 228
+ DG F GR+L V
Sbjct: 59 SEL--DGSIFQGRLLHV 73
|
This subfamily corresponds to the RRM3 of RBM19 and RRM2 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). MRD1 is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). It is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. MRD1 contains 5 conserved RRMs, which may play an important structural role in organizing specific rRNA processing events. . Length = 74 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 7e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 676 GLELDVFTYEALLKACCKSGRMQSALAVTKEMS 708
GL+ DV TY L+ C++GR+ A+ + EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 7e-05
Identities = 36/157 (22%), Positives = 46/157 (29%), Gaps = 33/157 (21%)
Query: 10 PHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPK- 68
P P A P P + P PPSP PP+ H PP S P ++
Sbjct: 2589 PDAPPQSAR-----PRAPVDDRGDP--RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPH 2641
Query: 69 NPFKNLLNSATTHVPSPPSHSLSAKLRLSSK-------------------------LSPP 103
P P+P S + R + L+ P
Sbjct: 2642 PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADP 2701
Query: 104 PPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLA 140
PPPPP P PA + A SP+ A
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAA 2738
|
Length = 3151 |
| >gnl|CDD|240783 cd12337, RRM1_SRSF4_like, RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-05
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++++G LP ++ V FF+ +G I+ + L KN GFGFV ++ P + A
Sbjct: 1 RVYIGRLPYRARERDVERFFKGYGRIREINL--------KN-GFGFVEFEDP---RDADD 48
Query: 213 AV-EFDGVEFHGRVLTVKLDDG 233
AV E +G E G + V+ G
Sbjct: 49 AVYELNGKELCGERVIVEHARG 70
|
This subfamily corresponds to the RRM1 in three serine/arginine (SR) proteins: serine/arginine-rich splicing factor 4 (SRSF4 or SRp75 or SFRS4), serine/arginine-rich splicing factor 5 (SRSF5 or SRp40 or SFRS5 or HRS), serine/arginine-rich splicing factor 6 (SRSF6 or SRp55). SRSF4 plays an important role in both, constitutive and alternative, splicing of many pre-mRNAs. It can shuttle between the nucleus and cytoplasm. SRSF5 regulates both alternative splicing and basal splicing. It is the only SR protein efficiently selected from nuclear extracts (NE) by the splicing enhancer (ESE) and essential for enhancer activation. SRSF6 preferentially interacts with a number of purine-rich splicing enhancers (ESEs) to activate splicing of the ESE-containing exon. It is the only protein from HeLa nuclear extract or purified SR proteins that specifically binds B element RNA after UV irradiation. SRSF6 may also recognize different types of RNA sites. Members in this family contain two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a C-terminal RS domains rich in serine-arginine dipeptides. . Length = 70 |
| >gnl|CDD|240857 cd12411, RRM_ist3_like, RNA recognition motif in ist3 family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-05
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAA 206
+++ I++G LP + + ++ F Q+G I ++ L++ K+ GF F+ Y+
Sbjct: 5 QYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLVRD-KKTGKSKGFAFLAYED--- 60
Query: 207 EKSAMKAVE-FDGVEFHGRVLTV 228
++S + AV+ +G++ GR + V
Sbjct: 61 QRSTILAVDNLNGIKLLGRTIRV 83
|
This subfamily corresponds to the RRM of the ist3 family that includes fungal U2 small nuclear ribonucleoprotein (snRNP) component increased sodium tolerance protein 3 (ist3), X-linked 2 RNA-binding motif proteins (RBMX2) found in Metazoa and plants, and similar proteins. Gene IST3 encoding ist3, also termed U2 snRNP protein SNU17 (Snu17p), is a novel yeast Saccharomyces cerevisiae protein required for the first catalytic step of splicing and for progression of spliceosome assembly. It binds specifically to the U2 snRNP and is an intrinsic component of prespliceosomes and spliceosomes. Yeast ist3 contains an atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). In the yeast pre-mRNA retention and splicing complex, the atypical RRM of ist3 functions as a scaffold that organizes the other two constituents, Bud13p (bud site selection 13) and Pml1p (pre-mRNA leakage 1). Fission yeast Schizosaccharomyces pombe gene cwf29 encoding ist3, also termed cell cycle control protein cwf29, is an RNA-binding protein complexed with cdc5 protein 29. It also contains one RRM. The biological function of RBMX2 remains unclear. It shows high sequence similarity to yeast ist3 protein and harbors one RRM as well. . Length = 89 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 8e-05
Identities = 34/158 (21%), Positives = 50/158 (31%), Gaps = 25/158 (15%)
Query: 9 APHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPK 68
A + P P L+ + PP SP P P PP S++PT P
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP-----PPTSAQPTAPPPPP 2843
Query: 69 NPFKNLLNSATTHVPS------PPSHSLSAK--------LRLSSKLSPPPPPPP---PPP 111
P L + P PPS S +AK +R ++ + PP
Sbjct: 2844 GPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903
Query: 112 PAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFR 149
E+ +PQ+ P + + P R
Sbjct: 2904 QPERPPQPQAP---PPPQPQPQPPPPPQPQPPPPPPPR 2938
|
Length = 3151 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV 751
YN LIDG + G V EA +L ++MK+ G++PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|241011 cd12567, RRM3_RBM19, RNA recognition motif 3 in RNA-binding protein 19 (RBM19) and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-IKGYNNFEKNVGFGFVIYDGPAAEKSA 210
G++F+ NL + + + F ++GP+ V L I K GF FV Y P + A
Sbjct: 3 GRLFIRNLAYTCTEEDLEKLFSKYGPLSEVHLPIDKLTK--KPKGFAFVTYMIP---EHA 57
Query: 211 MKAV-EFDGVEFHGRVLTV 228
+KA E DG F GR+L +
Sbjct: 58 VKAFAELDGTVFQGRLLHL 76
|
This subgroup corresponds to the RRM3 of RBM19, also termed RNA-binding domain-1 (RBD-1), which is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 79 |
| >gnl|CDD|241022 cd12578, RRM1_hnRNPA_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+F+G L + +F Q+G I + +++K N +++ GFGFV + + +AM
Sbjct: 1 KLFIGGLSYETTDDSLKNYFSQWGEITDCVVMKDPNT-KRSRGFGFVTFASASEVDAAMN 59
Query: 213 A 213
A
Sbjct: 60 A 60
|
This subfamily corresponds to the RRM1 in hnRNP A0, hnRNP A1, hnRNP A2/B1, hnRNP A3 and similar proteins. hnRNP A0 is a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A1 is an abundant eukaryotic nuclear RNA-binding protein that may modulate splice site selection in pre-mRNA splicing. hnRNP A2/B1 is an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). Many mRNAs, such as myelin basic protein (MBP), myelin-associated oligodendrocytic basic protein (MOBP), carboxyanhydrase II (CAII), microtubule-associated protein tau, and amyloid precursor protein (APP) are trafficked by hnRNP A2/B1. hnRNP A3 is also a RNA trafficking response element-binding protein that participates in the trafficking of A2RE-containing RNA. The hnRNP A subfamily is characterized by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 78 |
| >gnl|CDD|240900 cd12454, RRM2_RIM4_like, RNA recognition motif 2 in yeast meiotic activator RIM4 and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IFVG L + K + E F + G I V LIK N+ N F F+ ++ E++A +A
Sbjct: 6 IFVGQLSPDVTKEELNERFSRHGKILEVNLIKRANH--TNA-FAFIKFE---REQAAARA 59
Query: 214 VE-FDGVEFHGRVLTVKLDD 232
VE + + + V+ +
Sbjct: 60 VESENHSMLKNKTMHVQYKE 79
|
This subfamily corresponds to the RRM2 of RIM4, also termed regulator of IME2 protein 4, a putative RNA binding protein that is expressed at elevated levels early in meiosis. It functions as a meiotic activator required for both the IME1- and IME2-dependent pathways of meiotic gene expression, as well as early events of meiosis, such as meiotic division and recombination, in Saccharomyces cerevisiae. RIM4 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes a putative RNA-binding protein termed multicopy suppressor of sporulation protein Msa1. It is a putative RNA-binding protein encoded by a novel gene, msa1, from the fission yeast Schizosaccharomyces pombe. Msa1 may be involved in the inhibition of sexual differentiation by controlling the expression of Ste11-regulated genes, possibly through the pheromone-signaling pathway. Like RIM4, Msa1 also contains two RRMs, both of which are essential for the function of Msa1. . Length = 80 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 578 TFMPIIHGFARAGEMKRALEIFDMMRRSGC 607
T+ +I G+ +AG+++ ALE+F M+ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|240787 cd12341, RRM_hnRNPC_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein C (hnRNP C)-related proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 9e-05
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Query: 153 KIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++FVGNL + + K + E F ++G I + L KGY GFV +D E+ A
Sbjct: 2 RVFVGNLNTDKVSKEDLEEIFSKYGKILGISLHKGY---------GFVQFD---NEEDAR 49
Query: 212 KAV-EFDGVEFHGRVLTVK 229
AV +G E G+ L +
Sbjct: 50 AAVAGENGREIAGQKLDIN 68
|
This subfamily corresponds to the RRM in the hnRNP C-related protein family, including hnRNP C proteins, Raly, and Raly-like protein (RALYL). hnRNP C proteins, C1 and C2, are produced by a single coding sequence. They are the major constituents of the heterogeneous nuclear RNA (hnRNA) ribonucleoprotein (hnRNP) complex in vertebrates. They bind hnRNA tightly, suggesting a central role in the formation of the ubiquitous hnRNP complex; they are involved in the packaging of the hnRNA in the nucleus and in processing of pre-mRNA such as splicing and 3'-end formation. Raly, also termed autoantigen p542, is an RNA-binding protein that may play a critical role in embryonic development. The biological role of RALYL remains unclear. It shows high sequence homology with hnRNP C proteins and Raly. Members of this family are characterized by an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal auxiliary domain. The Raly proteins contain a glycine/serine-rich stretch within the C-terminal regions, which is absent in the hnRNP C proteins. Thus, the Raly proteins represent a newly identified class of evolutionarily conserved autoepitopes. . Length = 68 |
| >gnl|CDD|241015 cd12571, RRM6_RBM19, RNA recognition motif 6 in RNA-binding protein 19 (RBM19) and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-05
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KI V N+P + E F FG +K V L K + GFGFV + K A K
Sbjct: 2 KILVRNIPFEATVKELRELFSTFGELKTVRLPKKMTGTGSHRGFGFVDFITKQDAKRAFK 61
Query: 213 AVEFDGVEFHGRVL 226
A+ +GR L
Sbjct: 62 ALC-HSTHLYGRRL 74
|
This subgroup corresponds to the RRM6 of RBM19, also termed RNA-binding domain-1 (RBD-1), which is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 79 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 28/137 (20%), Positives = 40/137 (29%), Gaps = 7/137 (5%)
Query: 6 SLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSK 65
SL +P P P + + PP + P PP S S
Sbjct: 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856
Query: 66 IPKNPFKNLLNS-ATTHVPSPPSHSLSAKL------RLSSKLSPPPPPPPPPPPAEQLQE 118
P + S + P+ P+ +L R + + PP P PP +
Sbjct: 2857 APGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP 2916
Query: 119 PQSQGNDEIPDAENRSP 135
PQ Q P P
Sbjct: 2917 PQPQPQPPPPPQPQPPP 2933
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 37/139 (26%), Positives = 46/139 (33%), Gaps = 14/139 (10%)
Query: 8 SAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSP----TPPEPHNLHRPPKSSRPTR 63
APH AT L P S + PP P TP P RPP ++ P
Sbjct: 2710 PAPH-ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768
Query: 64 SKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQG 123
P P + P SLS S+ S P P P PPA L +
Sbjct: 2769 PAPPAAP----AAGPPRRLTRPAVASLSE-----SRESLPSPWDPADPPAAVLAPAAALP 2819
Query: 124 NDEIPDAENRSPSSSLATS 142
P P+S+ T+
Sbjct: 2820 PAASPAGPLPPPTSAQPTA 2838
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 31/141 (21%), Positives = 45/141 (31%), Gaps = 21/141 (14%)
Query: 24 PHHPTTTSLSFSLKQPP---PPSPTPPEPHNLHRPPKSSRPTRSKIP----KNPFKNLLN 76
P L F ++ P PPS H P ++S PTR + PF
Sbjct: 341 PRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPG 400
Query: 77 SATTHVPSPPSHSLSAKLRLSSKLSPPPPPP--------------PPPPPAEQLQEPQSQ 122
P+ P + + + PPPP P PPP Q P ++
Sbjct: 401 GDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE 460
Query: 123 GNDEIPDAENRSPSSSLATSQ 143
+ PD R +L +
Sbjct: 461 PAPDDPDDATRKALDALRERR 481
|
Length = 3151 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574
+ YN ++ A G+ D A+ +++EM+ +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGI 362
Y +LI Y +EEAL ++MKE+G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|240682 cd12236, RRM_snRNP70, RNA recognition motif in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV L + + F ++GPIK + L++ K G+ F+ ++ K+A K
Sbjct: 4 LFVARLNYDTTESKLRREFEEYGPIKRIRLVRDKKT-GKPRGYAFIEFEHERDMKAAYKY 62
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKN 238
DG + GR + V ++ GR +K
Sbjct: 63 A--DGKKIDGRRVLVDVERGRTVKG 85
|
This subfamily corresponds to the RRM of U1-70K, also termed snRNP70, a key component of the U1 snRNP complex, which is one of the key factors facilitating the splicing of pre-mRNA via interaction at the 5' splice site, and is involved in regulation of polyadenylation of some viral and cellular genes, enhancing or inhibiting efficient poly(A) site usage. U1-70K plays an essential role in targeting the U1 snRNP to the 5' splice site through protein-protein interactions with regulatory RNA-binding splicing factors, such as the RS protein ASF/SF2. Moreover, U1-70K protein can specifically bind to stem-loop I of the U1 small nuclear RNA (U1 snRNA) contained in the U1 snRNP complex. It also mediates the binding of U1C, another U1-specific protein, to the U1 snRNP complex. U1-70K contains a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by an adjacent glycine-rich region at the N-terminal half, and two serine/arginine-rich (SR) domains at the C-terminal half. The RRM is responsible for the binding of stem-loop I of U1 snRNA molecule. Additionally, the most prominent immunodominant region that can be recognized by auto-antibodies from autoimmune patients may be located within the RRM. The SR domains are involved in protein-protein interaction with SR proteins that mediate 5' splice site recognition. For instance, the first SR domain is necessary and sufficient for ASF/SF2 Binding. The family also includes Drosophila U1-70K that is an essential splicing factor required for viability in flies, but its SR domain is dispensable. The yeast U1-70k doesn't contain easily recognizable SR domains and shows low sequence similarity in the RRM region with other U1-70k proteins and therefore not included in this family. The RRM domain is dispensable for yeast U1-70K function. Length = 91 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 14/144 (9%)
Query: 7 LSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPP--------KS 58
L +PH P P T P P +S Q P PP PH L + P
Sbjct: 237 LPSPHPPLQPQTASQQSPQPPAPSS---RHPQSSHHGPGPPMPHALQQGPVFLQHPSSNP 293
Query: 59 SRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPP---PPPAEQ 115
+P + P L + A H +PPS S + + PP P P PPP
Sbjct: 294 PQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTP 353
Query: 116 LQEPQSQGNDEIPDAENRSPSSSL 139
+ + +Q + P + SP +
Sbjct: 354 IPQLPNQSHKHPPHLQGPSPFPQM 377
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|240823 cd12377, RRM3_Hu, RNA recognition motif 3 in the Hu proteins family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVI---YDGPAAEKSA 210
IFV NLP + L+ + F FG + NV +I+ K G+GFV Y E++
Sbjct: 4 IFVYNLPPDADESLLWQLFSPFGAVTNVKVIRDLTT-NKCKGYGFVTMTNY-----EEAY 57
Query: 211 MKAVEFDGVEFHGRVLTV 228
+G GRVL V
Sbjct: 58 SAIASLNGYRLGGRVLQV 75
|
This subfamily corresponds to the RRM3 of the Hu proteins family which represent a group of RNA-binding proteins involved in diverse biological processes. Since the Hu proteins share high homology with the Drosophila embryonic lethal abnormal vision (ELAV) protein, the Hu family is sometimes referred to as the ELAV family. Drosophila ELAV is exclusively expressed in neurons and is required for the correct differentiation and survival of neurons in flies. The neuronal members of the Hu family include Hu-antigen B (HuB or ELAV-2 or Hel-N1), Hu-antigen C (HuC or ELAV-3 or PLE21), and Hu-antigen D (HuD or ELAV-4), which play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. Hu-antigen R (HuR or ELAV-1 or HuA) is the ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. Hu proteins perform their cytoplasmic and nuclear molecular functions by coordinately regulating functionally related mRNAs. In the cytoplasm, Hu proteins recognize and bind to AU-rich RNA elements (AREs) in the 3' untranslated regions (UTRs) of certain target mRNAs, such as GAP-43, vascular epithelial growth factor (VEGF), the glucose transporter GLUT1, eotaxin and c-fos, and stabilize those ARE-containing mRNAs. They also bind and regulate the translation of some target mRNAs, such as neurofilament M, GLUT1, and p27. In the nucleus, Hu proteins function as regulators of polyadenylation and alternative splicing. Each Hu protein contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. . Length = 78 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 38 QPPPPSPTPPEPHNLH-RPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRL 96
QPPPPS P P P +S +++P+ F L + PS P S+ A
Sbjct: 187 QPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPP-- 244
Query: 97 SSKLSPPPPPPPPPPP 112
+ PPP PPP
Sbjct: 245 IPPVIQYVAPPPVPPP 260
|
Length = 582 |
| >gnl|CDD|240808 cd12362, RRM3_CELF1-6, RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 17/86 (19%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGY--NNFEKNVGFGFVIYDGPAAEKSAM 211
+F+ +LPN + + ++ F P NVI K + N ++ FGFV YD P SA
Sbjct: 1 LFIYHLPN---EFTDQDLYQLFAPFGNVISAKVFVDKNTGQSKCFGFVSYDNPE---SAQ 54
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLK 237
A++ +G + G+RLK
Sbjct: 55 AAIK----AMNGFQV-----GGKRLK 71
|
This subgroup corresponds to the RRM3 of the CUGBP1 and ETR-3-like factors (CELF) or BRUNOL (Bruno-like) proteins, a family of structurally related RNA-binding proteins involved in the regulation of pre-mRNA splicing in the nucleus and in the control of mRNA translation and deadenylation in the cytoplasm. The family contains six members: CELF-1 (also termed BRUNOL-2, or CUG-BP1, or NAPOR, or EDEN-BP), CELF-2 (also termed BRUNOL-3, or ETR-3, or CUG-BP2, or NAPOR-2), CELF-3 (also termed BRUNOL-1, or TNRC4, or ETR-1, or CAGH4, or ER DA4), CELF-4 (also termed BRUNOL-4), CELF-5 (also termed BRUNOL-5), CELF-6 (also termed BRUNOL-6). They all contain three highly conserved RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains): two consecutive RRMs (RRM1 and RRM2) situated in the N-terminal region followed by a linker region and the third RRM (RRM3) close to the C-terminus of the protein. The low sequence conservation of the linker region is highly suggestive of a large variety in the co-factors that associate with the various CELF family members. Based on both sequence similarity and function, the CELF family can be divided into two subfamilies, the first containing CELFs 1 and 2, and the second containing CELFs 3, 4, 5, and 6. The different CELF proteins may act through different sites on at least some substrates. Furthermore, CELF proteins may interact with each other in varying combinations to influence alternative splicing in different contexts. . Length = 73 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEP 329
+ ++ A+ GD A E M+A G++P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV 681
TY T++ G G +A E F +++ G+E DV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS 365
Y LI +EEAL ++MKE GIE
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 20/128 (15%)
Query: 20 LTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSAT 79
L P P + S SL PP + T P PP+S +PF + A
Sbjct: 415 LQSVPAQPPVLTQSQSL---PPKASTHPHSGLHSGPPQSPFAQ------HPFTSGGLPAI 465
Query: 80 THVPSPPSHSLSAKLRLSSKLSPP----------PPPPPPPPPAEQLQEPQSQGND-EIP 128
PS P+ + +A R SS PP P PP PP + +EP + + E P
Sbjct: 466 GPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESP 525
Query: 129 DAENRSPS 136
RSPS
Sbjct: 526 PPPPRSPS 533
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|240840 cd12394, RRM1_RBM34, RNA recognition motif 1 in RNA-binding protein 34 (RBM34) and similar proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPI----------------KNVILIKGYNNFEKNVGFG 197
+FVGNLP KK + + F+QFGPI K V IK + +K+
Sbjct: 3 VFVGNLPLTTKKKDLKKLFKQFGPIESVRFRSVPVKEKKLPKKVAAIKKKFHDKKDNVNA 62
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+V++ E+SA KA++ +G EF G + V
Sbjct: 63 YVVF---KEEESAEKALKLNGTEFEGHHIRV 90
|
This subfamily corresponds to the RRM1 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 91 |
| >gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation region | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 12/142 (8%)
Query: 6 SLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSK 65
+ + H P HPT + L F P P+ PH R P P
Sbjct: 131 AFTQHHRPVITGHSGISASPHPTPSPLHFPTSPILPQQPSSYFPHTAIRYPPHLHPQD-- 188
Query: 66 IPKNPFKNLLNSATTHVPSPPSHSLSAKLR---LSSKLSPPPPPP------PPPPPAEQL 116
P F L+ ++ P+ S K+ L + + PPPPP P P P +
Sbjct: 189 -PLKEFVQLVCDPSSQQAGQPNGSGQGKVPNHFLPTPMLAPPPPPPMARPVPLPMPDTKP 247
Query: 117 QEPQSQGNDEIPDAENRSPSSS 138
++G P + S S+
Sbjct: 248 PTTSTEGGATSPTSPTYSTPST 269
|
Length = 295 |
| >gnl|CDD|215605 PLN03153, PLN03153, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 26/121 (21%)
Query: 43 SPTPPEPHNLHRPPKSSRPTRSK-------------IPKNPFKNLLNSATT----HV--- 82
SP P L SR R + + +L+ S TT H
Sbjct: 3 SPHRPCSSPLSLSRTRSRRWRHSRTGTAVVAVAALLLSTTAWLSLVFSGTTARCWHRFKD 62
Query: 83 --PSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAE-QLQEPQSQGNDEIPDAENRSPSSSL 139
SP + + + PPPP P P+ L + N + + E + L
Sbjct: 63 WEGSPDTLLWNKRYHHPIVTPLPPPPSSPSLPSSLLLDHFR---NRSLSEIERLKVEAEL 119
Query: 140 A 140
+
Sbjct: 120 S 120
|
Length = 537 |
| >gnl|CDD|240719 cd12273, RRM1_NEFsp, RNA recognition motif 1 in vertebrate putative RNA exonuclease NEF-sp | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++ G P V F GP++ V ++ F+ ++ ++A A
Sbjct: 2 VYAGPFPTSFCLSDVKRLFETCGPVRKVTML-----SRTVQPHAFITFE---NLEAAQLA 53
Query: 214 VE-FDGVEFHGRVLTVK 229
+E +G G + V+
Sbjct: 54 IETLNGASVDGNCIKVQ 70
|
This subfamily corresponds to the RRM1 of NEF-sp., including uncharacterized putative RNA exonuclease NEF-sp found in vertebrates. Although its cellular functions remains unclear, NEF-sp contains an exonuclease domain and two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), suggesting it may possess both exonuclease and RNA-binding activities. . Length = 71 |
| >gnl|CDD|240773 cd12327, RRM2_DAZAP1, RNA recognition motif 2 in Deleted in azoospermia-associated protein 1 (DAZAP1) and similar proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG LP + + + ++F QFG + V+++ + ++ GFGF+ ++ +E S +
Sbjct: 4 KIFVGGLPPNVTETDLRKYFSQFGTVTEVVVMYDHEK-KRPRGFGFITFE---SEDSVDQ 59
Query: 213 AVEFDGVEFHGRVLTVK 229
V + +G+ + VK
Sbjct: 60 VVNEHFHDINGKKVEVK 76
|
This subfamily corresponds to the RRM2 of DAZAP1 or DAZ-associated protein 1, also termed proline-rich RNA binding protein (Prrp), a multi-functional ubiquitous RNA-binding protein expressed most abundantly in the testis and essential for normal cell growth, development, and spermatogenesis. DAZAP1 is a shuttling protein whose acetylated is predominantly nuclear and the nonacetylated form is in cytoplasm. DAZAP1 also functions as a translational regulator that activates translation in an mRNA-specific manner. DAZAP1 was initially identified as a binding partner of Deleted in Azoospermia (DAZ). It also interacts with numerous hnRNPs, including hnRNP U, hnRNP U like-1, hnRNPA1, hnRNPA/B, and hnRNP D, suggesting DAZAP1 might associate and cooperate with hnRNP particles to regulate adenylate-uridylate-rich elements (AU-rich element or ARE)-containing mRNAs. DAZAP1 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal proline-rich domain. . Length = 80 |
| >gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 27/113 (23%), Positives = 34/113 (30%), Gaps = 11/113 (9%)
Query: 10 PHFPHTPATLLTHKPHHPTTTSLSFSLKQPPP-PSPTPPEPHNLHRPPKSSRPTRSKIPK 68
P P + + T TS + K P P T PP + K P+
Sbjct: 225 PDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPE 284
Query: 69 NPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPP---------PPPPPPPPP 112
K A+ SP S S K L+ P P P P PP
Sbjct: 285 ASPKE-SEEASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKPQSPP 336
|
This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 35 SLKQPP---PPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLS 91
SL Q P PP L P ++ + +S + +P PPS +L
Sbjct: 347 SLGQSPNLRSSQLPPPTKRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPS-ALP 405
Query: 92 AKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEET 146
+ + SS PP P P +L P + P +S T +
Sbjct: 406 SHVGASSSKHHRLPPSVLPGP--RLSSPSPSPSLPTRRPGTPPPPASPPTPSPPS 458
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 508 TYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDV 541
TY+ LI+G K +F+++ G++PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 36/155 (23%), Positives = 46/155 (29%), Gaps = 12/155 (7%)
Query: 19 LLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHN--------LHRPPKSSRPTRSKIPKNP 70
L T P P TT S P PPSP P N L PP + K K
Sbjct: 45 LETGYPFCPPTTPHPSSQPPPCPPSPGHPPQTNDTHEKDLALQPPPGG----KKKEKKKK 100
Query: 71 FKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDA 130
P + P PPPP E P D
Sbjct: 101 ETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPPPPGGEGEVEGGPSPGPGPGPLDQ 160
Query: 131 ENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKK 165
E P +L + E +F Q V +L ++ ++
Sbjct: 161 EGLLPGVALRLQKWEQQFDQLVDNIVVDLRDYWQR 195
|
Length = 200 |
| >gnl|CDD|240858 cd12412, RRM_DAZL_BOULE, RNA recognition motif in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+IFVG +P + + +FF +FG +K+V +I K G+GFV ++ ++ A K
Sbjct: 4 RIFVGGIPPDTTEEELRDFFSRFGSVKDVKIITDRAGVSK--GYGFVTFE---TQEDAEK 58
Query: 213 AVEFDGVEFHGRVLTV 228
+ + F G+ L +
Sbjct: 59 ILAMGNLNFRGKKLNI 74
|
This subfamily corresponds to the RRM domain of two Deleted in AZoospermia (DAZ) autosomal homologs, DAZL (DAZ-like) and BOULE. BOULE is the founder member of the family and DAZL arose from BOULE in an ancestor of vertebrates. The DAZ gene subsequently originated from a duplication transposition of the DAZL gene. Invertebrates contain a single DAZ homolog, BOULE, while vertebrates, other than catarrhine primates, possess both BOULE and DAZL genes. The catarrhine primates possess BOULE, DAZL, and DAZ genes. The family members encode closely related RNA-binding proteins that are required for fertility in numerous organisms. These proteins contain an RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a varying number of copies of a DAZ motif, believed to mediate protein-protein interactions. DAZL and BOULE contain a single copy of the DAZ motif, while DAZ proteins can contain 8-24 copies of this repeat. Although their specific biochemical functions remain to be investigated, DAZL proteins may interact with poly(A)-binding proteins (PABPs), and act as translational activators of specific mRNAs during gametogenesis. . Length = 80 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 4e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603
+P T+ +I G RAG + A+E+ D M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 42 PSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLS 101
P+P P R P+++R P +A +PP A L +
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPE-----AAAPNGAAAPPDGVWGAALAGAPLAL 309
Query: 102 PPPPPPPPPPPAEQLQE 118
P PP PPPP PA +E
Sbjct: 310 PAPPDPPPPAPAGDAEE 326
|
Length = 3151 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP 539
++TY+ L+ K D AV E++ GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712
+ TY ALL A K+G ALAV +EM A +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|241014 cd12570, RRM5_MRD1, RNA recognition motif 5 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 4e-04
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
KI V NLP K V F +G +K+V + K ++ + GF FV + +AM
Sbjct: 1 TKILVKNLPFEATKKDVRTLFSSYGQLKSVRVPKKFDQSAR--GFAFVEFSTAKEALNAM 58
Query: 212 KAVEFDGVEFHGRVLTVK 229
A++ GR L ++
Sbjct: 59 NALK--DTHLLGRRLVLQ 74
|
This subgroup corresponds to the RRM5 of MRD1 which is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well-conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). MRD1 is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. It contains 5 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which may play an important structural role in organizing specific rRNA processing events. . Length = 76 |
| >gnl|CDD|240769 cd12323, RRM2_MSI, RNA recognition motif 2 in RNA-binding protein Musashi homologs Musashi-1, Musashi-2 and similar proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 4e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPAAEK 208
KIFVG L + V ++F QFG +++ +L+ F+K GFGFV ++ +E
Sbjct: 1 KIFVGGLSANTTEDDVKKYFSQFGKVEDAMLM-----FDKQTNRHRGFGFVTFE---SED 52
Query: 209 SAMKAVEFDGVEFH 222
K E + FH
Sbjct: 53 VVDKVCE---IHFH 63
|
This subfamily corresponds to the RRM2.in Musashi-1 (also termed Msi1), a neural RNA-binding protein putatively expressed in central nervous system (CNS) stem cells and neural progenitor cells, and associated with asymmetric divisions in neural progenitor cells. It is evolutionarily conserved from invertebrates to vertebrates. Musashi-1 is a homolog of Drosophila Musashi and Xenopus laevis nervous system-specific RNP protein-1 (Nrp-1). It has been implicated in the maintenance of the stem-cell state, differentiation, and tumorigenesis. It translationally regulates the expression of a mammalian numb gene by binding to the 3'-untranslated region of mRNA of Numb, encoding a membrane-associated inhibitor of Notch signaling, and further influences neural development. Moreover, Musashi-1 represses translation by interacting with the poly(A)-binding protein and competes for binding of the eukaryotic initiation factor-4G (eIF-4G). Musashi-2 (also termed Msi2) has been identified as a regulator of the hematopoietic stem cell (HSC) compartment and of leukemic stem cells after transplantation of cells with loss and gain of function of the gene. It influences proliferation and differentiation of HSCs and myeloid progenitors, and further modulates normal hematopoiesis and promotes aggressive myeloid leukemia. Both, Musashi-1 and Musashi-2, contain two conserved N-terminal tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), along with other domains of unknown function. . Length = 74 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 5e-04
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISP 644
+ T+NAL+L L + + A+ +L+EM +G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|240892 cd12446, RRM_RBM25, RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 153 KIFVGNLP-----NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAE 207
+FVGN+P ++I+K L + G + + +K + K FGF ++ P
Sbjct: 2 TVFVGNIPEGVSDDFIRKLL-----EKCGKVLSWKRVKDPST-GKLKAFGFCEFEDPE-- 53
Query: 208 KSAMKAVE-FDGVEFHGRVLTVKLDD 232
A++A+ +G+E G+ L VK+D
Sbjct: 54 -GALRALRLLNGLELGGKKLLVKVDA 78
|
This subfamily corresponds to the RRM of RBM25, also termed Arg/Glu/Asp-rich protein of 120 kDa (RED120), or protein S164, or RNA-binding region-containing protein 7, an evolutionary-conserved splicing coactivator SRm160 (SR-related nuclear matrix protein of 160 kDa, )-interacting protein. RBM25 belongs to a family of RNA-binding proteins containing a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), at the N-terminus, a RE/RD-rich (ER) central region, and a C-terminal proline-tryptophan-isoleucine (PWI) motif. It localizes to the nuclear speckles and associates with multiple splicing components, including splicing cofactors SRm160/300, U snRNAs, assembled splicing complexes, and spliced mRNAs. It may play an important role in pre-mRNA processing by coupling splicing with mRNA 3'-end formation. Additional research indicates that RBM25 is one of the RNA-binding regulators that direct the alternative splicing of apoptotic factors. It can activate proapoptotic Bcl-xS 5'ss by binding to the exonic splicing enhancer, CGGGCA, and stabilize the pre-mRNA-U1 snRNP through interaction with hLuc7A, a U1 snRNP-associated factor. . Length = 84 |
| >gnl|CDD|240798 cd12352, RRM1_TIA1_like, RNA recognition motif 1 in granule-associated RNA binding proteins p40-TIA-1 and TIAR | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
++VGNL + + L+ E F Q GPIK+ LI+ N + FV Y
Sbjct: 1 LYVGNLDRTVTEDLLAELFSQIGPIKSCKLIRE----HGNDPYAFVEY 44
|
This subfamily corresponds to the RRM1 of nucleolysin TIA-1 isoform p40 (p40-TIA-1 or TIA-1) and nucleolysin TIA-1-related protein (TIAR), both of which are granule-associated RNA binding proteins involved in inducing apoptosis in cytotoxic lymphocyte (CTL) target cells. TIA-1 and TIAR share high sequence similarity. They are expressed in a wide variety of cell types. TIA-1 can be phosphorylated by a serine/threonine kinase that is activated during Fas-mediated apoptosis.TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. Both, TIA-1 and TIAR, bind specifically to poly(A) but not to poly(C) homopolymers. They are composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. TIA-1 and TIAR interact with RNAs containing short stretches of uridylates and their RRM2 can mediate the specific binding to uridylate-rich RNAs. The C-terminal auxiliary domain may be responsible for interacting with other proteins. In addition, TIA-1 and TIAR share a potential serine protease-cleavage site (Phe-Val-Arg) localized at the junction between their RNA binding domains and their C-terminal auxiliary domains. Length = 72 |
| >gnl|CDD|240764 cd12318, RRM5_RBM19_like, RNA recognition motif 5 in RNA-binding protein 19 (RBM19 or RBD-1) and similar proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 5e-04
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 154 IFVGNLPNW------IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDG 203
+FV NL N+ +KKH F + G +++V + K + G+GFV +
Sbjct: 3 LFVKNL-NFKTTEETLKKH-----FEKCGGVRSVTIAKKKDPKGPGKLLSMGYGFVEFKS 56
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVKL 230
A + A+K ++ G G L +KL
Sbjct: 57 KEAAQKALKRLQ--GTVLDGHALELKL 81
|
This subfamily corresponds to the RRM5 of RBM19 and RRM4 of MRD1. RBM19, also termed RNA-binding domain-1 (RBD-1), is a nucleolar protein conserved in eukaryotes involved in ribosome biogenesis by processing rRNA and is essential for preimplantation development. It has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 82 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 24/113 (21%), Positives = 30/113 (26%), Gaps = 14/113 (12%)
Query: 37 KQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRL 96
P SP+ P + P S P P + + PS
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDS-------SLPPAPSSFQSDTPPPSPE 229
Query: 97 SSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFR 149
S PPP P PPP Q P +P S+ AT
Sbjct: 230 SPTNPSPPPGPAAPPPPPVQQVPPLST-------AKPTPPSASATPAPIGGIT 275
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 6e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 577 RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP 609
T+ ++ A+AG+ AL + + M+ SG P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|240780 cd12334, RRM1_SF3B4, RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 6e-04
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVIL----IKGYNNFEKNVGFGFVIYDGPAAEKS 209
++VGNL + + L+ E F Q GP+ NV + + + G+GFV + E+
Sbjct: 1 VYVGNLDEKVTEELLWELFIQAGPVVNVHIPKDRVTQAHQ-----GYGFVEFLS---EED 52
Query: 210 AMKAVE-FDGVEFHGRVLTVK 229
A A++ + ++ +G+ + V
Sbjct: 53 ADYAIKIMNMIKLYGKPIRVN 73
|
This subfamily corresponds to the RRM1 of SF3B4, also termed pre-mRNA-splicing factor SF3b 49 kDa (SF3b50), or spliceosome-associated protein 49 (SAP 49). SF3B4 a component of the multiprotein complex splicing factor 3b (SF3B), an integral part of the U2 small nuclear ribonucleoprotein (snRNP) and the U11/U12 di-snRNP. SF3B is essential for the accurate excision of introns from pre-messenger RNA, and is involved in the recognition of the pre-mRNA's branch site within the major and minor spliceosomes. SF3B4 functions to tether U2 snRNP with pre-mRNA at the branch site during spliceosome assembly. It is an evolutionarily highly conserved protein with orthologs across diverse species. SF3B4 contains two closely adjacent N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It binds directly to pre-mRNA and also interacts directly and highly specifically with another SF3B subunit called SAP 145. . Length = 74 |
| >gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP) | Back alignment and domain information |
|---|
Score = 42.5 bits (99), Expect = 6e-04
Identities = 36/126 (28%), Positives = 47/126 (37%), Gaps = 20/126 (15%)
Query: 10 PHFPHTPATLLT----HKPHHPTT----TSLSFSLKQPP-------PPSPTPPEPHNLHR 54
P++P+ A L H+P PT S SLK PP PPS P NL
Sbjct: 229 PYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPPECLLTPLPPSALPSADDNLKT 288
Query: 55 PPKSS-RPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPA 113
P + RP +P + N+ P PP L+P PP PP
Sbjct: 289 PAECLLRP----LPPSADDNIKECPLALKPPPPLPPSVDDNLKECLLAPLPPSALPPSVD 344
Query: 114 EQLQEP 119
+ L+ P
Sbjct: 345 DNLKTP 350
|
This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans. Length = 350 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 7e-04
Identities = 26/137 (18%), Positives = 36/137 (26%), Gaps = 14/137 (10%)
Query: 6 SLSAPHFPHTPATLLTHKPHHPTTTSLSFS------LKQPPPPSPTPPEPHNLHRPPKS- 58
P P P + L S +++ PP +P RPP
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885
Query: 59 ------SRPTRS-KIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPP 111
SR T S +P + + P P PP P PP P
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945
Query: 112 PAEQLQEPQSQGNDEIP 128
+ + G P
Sbjct: 2946 TTDPAGAGEPSGAVPQP 2962
|
Length = 3151 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 682 FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT 716
TY L+ CK+GR++ AL + KEM + I +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 26/109 (23%), Positives = 32/109 (29%), Gaps = 12/109 (11%)
Query: 38 QPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPP-SHSLSAKLRL 96
PPP P P S PT S P + A P+PP S
Sbjct: 69 TGPPPGPGTEAP----ANESRSTPTWSLSTLAPA----SPAREGSPTPPGPSSPDPPPPT 120
Query: 97 SSKLSPPPPPPP---PPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATS 142
SPPP P P P + A + +S A+S
Sbjct: 121 PPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASS 169
|
Length = 1352 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 32/126 (25%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 24 PHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTR--SKIPKNPFKNLLNSATTH 81
P S + QPP P P +P L +P + P+ P +
Sbjct: 220 LPAP-----SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
Query: 82 VPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQ--GNDEIPDAENRSPSSSL 139
P PP + + L + P PPP P +Q+PQ Q G S
Sbjct: 275 QP-PPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQRE 333
Query: 140 ATSQEE 145
A SQEE
Sbjct: 334 ALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|240730 cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG-YNNFEKNVGFGFVIYDGPAAEKSAMK 212
++VGNL I + + F FG I+ V L + K G+GF+ + K A++
Sbjct: 1 LYVGNLHFNITEDDLRGIFEPFGEIEFVQLQRDPETGRSK--GYGFIQFADAEDAKKALE 58
Query: 213 AVEFDGVEFHGRVLTV 228
+ +G E GR + V
Sbjct: 59 --QLNGFELAGRPIKV 72
|
This subfamily corresponds to the RRM2 of RBM39 (also termed HCC1), a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 7/137 (5%)
Query: 9 APHFPHTPATLLT-----HKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTR 63
P P TL T + P++ S P P P + P S P
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314
Query: 64 SK--IPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQS 121
S + S+++ + S S S PPPP P P ++ + ++
Sbjct: 315 SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRA 374
Query: 122 QGNDEIPDAENRSPSSS 138
+ +
Sbjct: 375 PSSPAASAGRPTRRRAR 391
|
Length = 1352 |
| >gnl|CDD|240816 cd12370, RRM1_PUF60, RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 8e-04
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF-EKNVGFGFVIYDGPAAEKSA 210
+++VG++ + + + + F FGPIK++ + ++ K+ GF FV Y+ P A + A
Sbjct: 1 CRVYVGSISFELGEDTIRQAFSPFGPIKSIDM--SWDPVTMKHKGFAFVEYEVPEAAQLA 58
Query: 211 MKAVEFDGVEFHGRVLTV 228
++ + +GV GR + V
Sbjct: 59 LE--QMNGVMLGGRNIKV 74
|
This subfamily corresponds to the RRM1 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1). PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. Research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 76 |
| >gnl|CDD|240774 cd12328, RRM2_hnRNPA_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 8e-04
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILI--KGYNNFEKNVGFGFVIYD 202
K+FVG L + + + E+F Q+G +++V ++ K K GF FV +D
Sbjct: 1 KLFVGGLKEDVTEEDLREYFSQYGNVESVEIVTDKETG---KKRGFAFVTFD 49
|
This subfamily corresponds to the RRM2 of hnRNP A0, hnRNP A1, hnRNP A2/B1, hnRNP A3 and similar proteins. hnRNP A0 is a low abundance hnRNP protein that has been implicated in mRNA stability in mammalian cells. It has been identified as the substrate for MAPKAP-K2 and may be involved in the lipopolysaccharide (LPS)-induced post-transcriptional regulation of tumor necrosis factor-alpha (TNF-alpha), cyclooxygenase 2 (COX-2) and macrophage inflammatory protein 2 (MIP-2). hnRNP A1 is an abundant eukaryotic nuclear RNA-binding protein that may modulate splice site selection in pre-mRNA splicing. hnRNP A2/B1 is an RNA trafficking response element-binding protein that interacts with the hnRNP A2 response element (A2RE). Many mRNAs, such as myelin basic protein (MBP), myelin-associated oligodendrocytic basic protein (MOBP), carboxyanhydrase II (CAII), microtubule-associated protein tau, and amyloid precursor protein (APP) are trafficked by hnRNP A2/B1. hnRNP A3 is also a RNA trafficking response element-binding protein that participates in the trafficking of A2RE-containing RNA. The hnRNP A subfamily is characterized by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), followed by a long glycine-rich region at the C-terminus. . Length = 73 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 9e-04
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPT 330
+ +++ + G + A + F+ M+ RGIEP
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 26/114 (22%), Positives = 35/114 (30%), Gaps = 28/114 (24%)
Query: 6 SLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSK 65
L +P +L P HP TT + PP P + P R
Sbjct: 227 PLPSPQPVRHSPGILGPSPLHPHTT------RPSPPRPAFSRSPSSPLSPLPRPSTRRGL 280
Query: 66 IPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEP 119
+P NP L ++ H+ PPP PP P L+ P
Sbjct: 281 LP-NP--RLPRASRGHL-------------------PPPTSSAPPRPNGGLRRP 312
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|240788 cd12342, RRM_Nab3p, RNA recognition motif in yeast nuclear polyadenylated RNA-binding protein 3 (Nab3p) and similar proteins | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 9e-04
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 153 KIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++F+GNLP + K + F +G + ++L KN +GFV +D P + +A+
Sbjct: 1 RLFIGNLPTKRVSKEDLFRIFSTYGELAQIVL--------KN-AYGFVQFDSPESCANAI 51
Query: 212 KAVEFDGVEFHGRVL 226
+ G GR L
Sbjct: 52 NCEQ--GKMIRGRKL 64
|
This subfamily corresponds to the RRM of Nab3p, an acidic nuclear polyadenylated RNA-binding protein encoded by Saccharomyces cerevisiae NAB3 gene that is essential for cell viability. Nab3p is predominantly localized within the nucleoplasm and essential for growth in yeast. It may play an important role in packaging pre-mRNAs into ribonucleoprotein structures amenable to efficient nuclear RNA processing. Nab3p contains an N-terminal aspartic/glutamic acid-rich region, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal region rich in glutamine and proline residues. . Length = 71 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 34/158 (21%), Positives = 50/158 (31%), Gaps = 28/158 (17%)
Query: 9 APHFPHTPA-TLLTHKPH----HPTTTSLSFSLKQ--------PPPPSP----------T 45
AP P A +L +P HP + L++ PPPP P +
Sbjct: 2508 APPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRS 2567
Query: 46 PPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPP 105
P P RP + + +R++ P P + SA P S L P
Sbjct: 2568 VPPPRPAPRPSEPAVTSRARRPDAPPQ----SARPRAPVDDRGDPRGPAP-PSPLPPDTH 2622
Query: 106 PPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQ 143
P PPPP+ + + P A +
Sbjct: 2623 APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGR 2660
|
Length = 3151 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570
V YN++I +C G ++ A+ + KEM+++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 1/108 (0%)
Query: 38 QPPPPSPTPPEPHNLH-RPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRL 96
+ P P P E +S + +P + + P PS +
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 97 SSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQE 144
S S PP P P+S N P P +
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPP 253
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 16 PATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNP----- 70
P HKP T S + P P EP RP + RPTR K PK P
Sbjct: 561 PGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDI 620
Query: 71 ---FKNLLNSATTHVPSPPSHSLSAKLRLSSKL--SPPPPPPPPPP 111
K + + P PP S + K+ SP PP P PP
Sbjct: 621 PKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666
|
Length = 943 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 29/146 (19%), Positives = 44/146 (30%), Gaps = 16/146 (10%)
Query: 10 PHFPHTPATLLTHKPHHPTTTSLSFSLK--------QPPPPSPT---PPEPHNLHRPPKS 58
T + H P+ P+ T + L QPPP +PT PP +
Sbjct: 659 ITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPA 718
Query: 59 SRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQE 118
+ R++ P A + P + + R P P PPA
Sbjct: 719 AATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR-----PPAAAPGRARPPAAAPGA 773
Query: 119 PQSQGNDEIPDAENRSPSSSLATSQE 144
P Q + P A + P +
Sbjct: 774 PTPQPPPQAPPAPQQRPRGAPTPQPP 799
|
Length = 991 |
| >gnl|CDD|240807 cd12361, RRM1_2_CELF1-6_like, RNA recognition motif 1 and 2 in CELF/Bruno-like family of RNA binding proteins and plant flowering time control protein FCA | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.001
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+FVG LP + V F ++G I+ V +I+ + ++ G FV + ++ + A K
Sbjct: 1 KLFVGQLPKTATEEDVRALFEEYGNIEEVTIIRD-KDTGQSKGCAFVKF---SSREEAQK 56
Query: 213 AVE 215
A+E
Sbjct: 57 AIE 59
|
This subfamily corresponds to the RRM1 and RRM2 domains of the CUGBP1 and ETR-3-like factors (CELF) as well as plant flowering time control protein FCA. CELF, also termed BRUNOL (Bruno-like) proteins, is a family of structurally related RNA-binding proteins involved in regulation of pre-mRNA splicing in the nucleus, and control of mRNA translation and deadenylation in the cytoplasm. The family contains six members: CELF-1 (also known as BRUNOL-2, CUG-BP1, NAPOR, EDEN-BP), CELF-2 (also known as BRUNOL-3, ETR-3, CUG-BP2, NAPOR-2), CELF-3 (also known as BRUNOL-1, TNRC4, ETR-1, CAGH4, ER DA4), CELF-4 (BRUNOL-4), CELF-5 (BRUNOL-5) and CELF-6 (BRUNOL-6). They all contain three highly conserved RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains): two consecutive RRMs (RRM1 and RRM2) situated in the N-terminal region followed by a linker region and the third RRM (RRM3) close to the C-terminus of the protein. The low sequence conservation of the linker region is highly suggestive of a large variety in the co-factors that associate with the various CELF family members. Based on both, sequence similarity and function, the CELF family can be divided into two subfamilies, the first containing CELFs 1 and 2, and the second containing CELFs 3, 4, 5, and 6. The different CELF proteins may act through different sites on at least some substrates. Furthermore, CELF proteins may interact with each other in varying combinations to influence alternative splicing in different contexts. This subfamily also includes plant flowering time control protein FCA that functions in the posttranscriptional regulation of transcripts involved in the flowering process. FCA contains two RRMs, and a WW protein interaction domain. . Length = 77 |
| >gnl|CDD|217197 pfam02711, Pap_E4, E4 protein | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 96 LSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEET 146
L + +PP PPPPPPP A + + + +D + S E
Sbjct: 16 LHTYTTPPRPPPPPPPWAPKKRCRRRLESDSDSSSTTSPSSPPTPQPTTEC 66
|
This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but neither the function of E4 or E1--E4 is known. Length = 95 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++V NL + + + E F +FG I + ++K + ++ GF FV ++ A++
Sbjct: 181 LYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSG--RSRGFAFVNFEKHEDAAKAVEE 238
Query: 214 VEFDGVEFHGRVLTVKLDDGR---RLKNKAEVRA 244
+ +G + KL GR R + +AE+R
Sbjct: 239 M--NGKKIGLAKEGKKLYVGRAQKRAEREAELRR 270
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 14/141 (9%)
Query: 7 LSAPHFPH-TPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSK 65
S P + + P P SP P + PP P S+
Sbjct: 45 DSTKQPPAPEQVAKHELADAPLQQVNAALP-PAPAPQSPQPDQQQQSQAPPSHQYP--SQ 101
Query: 66 IPKNPFKNLLNSATTHVPS---PPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQ 122
+P +++ T PPS + P P PP + Q+ Q Q
Sbjct: 102 LPPQQVQSVPQQPTPQQEPYYPPPSQPQPPP-------AQQPQAQQPQPPPQVPQQQQYQ 154
Query: 123 GNDEIPDAENRSPSSSLATSQ 143
+ P + P + + Q
Sbjct: 155 SPPQQPQYQQNPPPQAQSAPQ 175
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|240768 cd12322, RRM2_TDP43, RNA recognition motif 2 in TAR DNA-binding protein 43 (TDP-43) and similar proteins | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.001
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY-DGPAAEKSAM 211
K+FVG L + + + ++F QFG + +V + K + F FV + D A+
Sbjct: 2 KVFVGRLTEDMTEEDLRQYFSQFGEVTDVYIPKPFR------AFAFVTFADPEVAQSLCG 55
Query: 212 KAVEFDGVEFH 222
+ GV H
Sbjct: 56 EDHIIKGVSVH 66
|
This subfamily corresponds to the RRM2 of TDP-43 (also termed TARDBP), a ubiquitously expressed pathogenic protein whose normal function and abnormal aggregation are directly linked to the genetic disease cystic fibrosis, and two neurodegenerative disorders: frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). TDP-43 binds both DNA and RNA, and has been implicated in transcriptional repression, pre-mRNA splicing and translational regulation. TDP-43 is a dimeric protein with two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal glycine-rich domain. The RRMs are responsible for DNA and RNA binding; they bind to TAR DNA and RNA sequences with UG-repeats. The glycine-rich domain can interact with the hnRNP family proteins to form the hnRNP-rich complex involved in splicing inhibition. It is also essential for the cystic fibrosis transmembrane conductance regulator (CFTR) exon 9-skipping activity. . Length = 71 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 641 GISPNEHTYTTIMHGYASLGDTGKAFEYF 669
G+ P+ TY T++ G G +A E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 613 TFNALILGLVEKRQMEKAIEILDEMTLAGI 642
T+N+LI G + ++E+A+E+ EM G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 8/114 (7%)
Query: 10 PHFPHTPATL--LTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIP 67
P H P+ + L+ KP P ++P P P RP P IP
Sbjct: 563 PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPK-RPRSAQRPTRPKSPKLPELLDIP 621
Query: 68 KNPFKNLLNSATTHVPSP-----PSHSLSAKLRLSSKLSPPPPPPPPPPPAEQL 116
K+P + + P P P K+ S K P PP P E+
Sbjct: 622 KSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKF 675
|
Length = 943 |
| >gnl|CDD|241037 cd12593, RRM_RBM11, RNA recognition motif in vertebrate RNA-binding protein 11 (RBM11) | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGNL +++ ++ E F Q GP+ V + K K+ FGFV + + A+
Sbjct: 4 LFVGNLECRVREEILYELFLQAGPLTKVTICKDKEGKPKS--FGFVCFKHSESVPYAIAL 61
Query: 214 VEFDGVEFHGRVLTVK 229
+ +G+ +GR + V
Sbjct: 62 L--NGIRLYGRPIKVH 75
|
This subfamily corresponds to the RRM or RBM11, a novel tissue-specific splicing regulator that is selectively expressed in brain, cerebellum and testis, and to a lower extent in kidney. RBM11 is localized in the nucleoplasm and enriched in SRSF2-containing splicing speckles. It may play a role in the modulation of alternative splicing during neuron and germ cell differentiation. RBM11 contains an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a region lacking known homology at the C-terminus. The RRM of RBM11 is responsible for RNA binding, whereas the C-terminal region permits nuclear localization and homodimerization. . Length = 75 |
| >gnl|CDD|240909 cd12463, RRM_G3BP1, RNA recognition motif found in ras GTPase-activating protein-binding protein 1 (G3BP1) and similar proteins | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
++FVGNLP+ + K + EFF+Q+G NV+ ++ N+ K FGFV++D
Sbjct: 5 QLFVGNLPHDVDKSELKEFFQQYG---NVVELR-INSGGKLPNFGFVVFDDS 52
|
This subgroup corresponds to the RRM of G3BP1, also termed ATP-dependent DNA helicase VIII (DH VIII), or GAP SH3 domain-binding protein 1, which has been identified as a phosphorylation-dependent endoribonuclease that interacts with the SH3 domain of RasGAP, a multi-functional protein controlling Ras activity. The acidic RasGAP binding domain of G3BP1 harbors an arsenite-regulated phosphorylation site and dominantly inhibits stress granule (SG) formation. G3BP1 also contains an N-terminal nuclear transfer factor 2 (NTF2)-like domain, an RNA recognition motif (RRM domain), and an Arg-Gly-rich region (RGG-rich region, or arginine methylation motif). The RRM domain and RGG-rich region are canonically associated with RNA binding. G3BP1 co-immunoprecipitates with mRNAs. It binds to and cleaves the 3'-untranslated region (3'-UTR) of the c-myc mRNA in a phosphorylation-dependent manner. Thus, G3BP1 may play a role in coupling extra-cellular stimuli to mRNA stability. It has been shown that G3BP1 is a novel Dishevelled-associated protein that is methylated upon Wnt3a stimulation and that arginine methylation of G3BP1 regulates both Ctnnb1 mRNA and canonical Wnt/beta-catenin signaling. Furthermore, G3BP1 can be associated with the 3'-UTR of beta-F1 mRNA in cytoplasmic RNA-granules, demonstrating that G3BP1 may specifically repress the translation of the transcript. Length = 80 |
| >gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 168 VMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVE-FDGVEFHGRVL 226
+ + F FG ++ + L +K GF FV + ++A KAV+ +GV F GR L
Sbjct: 1 LYKLFSPFGNVEKIKL------LKKKPGFAFVEFSTE---EAAEKAVQYLNGVLFGGRPL 51
Query: 227 TVKL 230
V
Sbjct: 52 RVDY 55
|
(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56 |
| >gnl|CDD|240669 cd12223, RRM_SR140, RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG--FGFVIYDGPAAEKSAM 211
++VGNL + + ++ + F +FGP+ +V ++ E+ GFV + A + A+
Sbjct: 4 LYVGNLNPKVTEEVLCQEFGRFGPLASVKIMWPRTEEERRRNRNCGFVAFMNRADAERAL 63
Query: 212 KAVEFDGVEFHGRVLTV 228
E DG + G L +
Sbjct: 64 D--ELDGKDVMGYELKL 78
|
This subgroup corresponds to the RRM of SR140 (also termed U2 snRNP-associated SURP motif-containing protein orU2SURP, or 140 kDa Ser/Arg-rich domain protein) which is a putative splicing factor mainly found in higher eukaryotes. Although it is initially identified as one of the 17S U2 snRNP-associated proteins, the molecular and physiological function of SR140 remains unclear. SR140 contains an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a SWAP/SURP domain that is found in a number of pre-mRNA splicing factors in the middle region, and a C-terminal arginine/serine-rich domain (RS domain). Length = 84 |
| >gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 102 PPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSP 135
PPPPPPP PP E+ + Q + + + ++ P
Sbjct: 274 PPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIP 307
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589 |
| >gnl|CDD|241100 cd12656, RRM3_HuD, RNA recognition motif 3 in vertebrate Hu-antigen D (HuD) | Back alignment and domain information |
|---|
Score = 37.4 bits (86), Expect = 0.002
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IFV NL + ++ + F FG + NV +I+ +N K GFGFV +++AM
Sbjct: 6 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNT-NKCKGFGFVTMTN--YDEAAMAI 62
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLK 237
+G RVL V + K
Sbjct: 63 ASLNGYRLGDRVLQVSFKTNKTHK 86
|
This subgroup corresponds to the RRM3 of HuD, also termed ELAV-like protein 4 (ELAV-4), or paraneoplastic encephalomyelitis antigen HuD, one of the neuronal members of the Hu family. The neuronal Hu proteins play important roles in neuronal differentiation, plasticity and memory. HuD has been implicated in various aspects of neuronal function, such as the commitment and differentiation of neuronal precursors as well as synaptic remodeling in mature neurons. HuD also functions as an important regulator of mRNA expression in neurons by interacting with AU-rich RNA element (ARE) and stabilizing multiple transcripts. Moreover, HuD regulates the nuclear processing/stability of N-myc pre-mRNA in neuroblastoma cells. And it also regulates the neurite elongation and morphological differentiation. HuD specifically bound poly(A) RNA. Like other Hu proteins, HuD contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. . Length = 86 |
| >gnl|CDD|240837 cd12391, RRM1_SART3, RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV NL + + + + F + G I +V L+K Y K G+ +V + E+S +A
Sbjct: 2 VFVSNLDYSVPEDELRKLFSKCGEITDVRLVKNYKGKSK--GYAYVEF---ENEESVQEA 56
Query: 214 VEFDGVEFHGR 224
++ D GR
Sbjct: 57 LKLDRELIKGR 67
|
This subfamily corresponds to the RRM1 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72 |
| >gnl|CDD|240800 cd12354, RRM3_TIA1_like, RNA recognition motif 2 in granule-associated RNA binding proteins (p40-TIA-1 and TIAR), and yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++VGNLP+ + + + F FG I+ V + K +K G+ FV +D A +A+
Sbjct: 3 VYVGNLPHGLTEEELQRTFSPFGAIEEVRVFK-----DK--GYAFVRFDTHEAAATAI-- 53
Query: 214 VEFDGVEFHGRVL 226
V +G +G+ +
Sbjct: 54 VAVNGTSINGQTV 66
|
This subfamily corresponds to the RRM3 of TIA-1, TIAR, and PUB1. Nucleolysin TIA-1 isoform p40 (p40-TIA-1 or TIA-1) and nucleolysin TIA-1-related protein (TIAR) are granule-associated RNA binding proteins involved in inducing apoptosis in cytotoxic lymphocyte (CTL) target cells. They share high sequence similarity and are expressed in a wide variety of cell types. TIA-1 can be phosphorylated by a serine/threonine kinase that is activated during Fas-mediated apoptosis.TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. Both TIA-1 and TIAR bind specifically to poly(A) but not to poly(C) homopolymers. They are composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. TIA-1 and TIAR interact with RNAs containing short stretches of uridylates and their RRM2 can mediate the specific binding to uridylate-rich RNAs. The C-terminal auxiliary domain may be responsible for interacting with other proteins. In addition, TIA-1 and TIAR share a potential serine protease-cleavage site (Phe-Val-Arg) localized at the junction between their RNA binding domains and their C-terminal auxiliary domains. This subfamily also includes a yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1, termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein, which has been identified as both a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP). It may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. PUB1 is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA); however, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RRMs, and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 73 |
| >gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.002
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 33/81 (40%)
Query: 37 KQPPPPSPT--PPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKL 94
K PPPP PP P+ PP + SPP
Sbjct: 4 KSPPPPVKQYSPPPPYYYKSPPPPVKS------------------PVYKSPPP------- 38
Query: 95 RLSSKLSPPPPPP----PPPP 111
SPPPP PPPP
Sbjct: 39 --PVYKSPPPPKYVYKSPPPP 57
|
Length = 57 |
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 36 LKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLR 95
LK P PSPT P + P SS + +P A P LS
Sbjct: 447 LKPPTSPSPTAPTGVS---PSVSSTSSVPAVPDTAPATAATDAAAP-PPANMRPLSPYAV 502
Query: 96 LSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQ 150
P P P P +E+ N +P ++LA Q + +
Sbjct: 503 YDDLKPPTSPSPAAPVGKV-----APSSTNEVVKVGNSAPPTALADEQHHAQPKP 552
|
Length = 576 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 400 NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDI-YHMMMDGY 446
+ + Y +I C+ +E A L +M++ GI P Y +++DG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI-KPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|241115 cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.003
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FVGN+P + + + F + GP+ + L+ K G+GF Y SAM+
Sbjct: 1 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET-GKPKGYGFCEYKDQETALSAMR- 58
Query: 214 VEFDGVEFHGRVLTV 228
+G E +GR L V
Sbjct: 59 -NLNGYELNGRQLRV 72
|
This subgroup corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. . Length = 75 |
| >gnl|CDD|240713 cd12267, RRM_YRA1_MLO3, RNA recognition motif in yeast RNA annealing protein YRA1 (Yra1p), yeast mRNA export protein mlo3 and similar proteins | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 153 KIFVGNLPNWIKKHLVMEFF-RQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
K+ V NLP + + + E+F Q GPIK V+L YN K+ G + + A
Sbjct: 1 KVIVSNLPKDVTEAQIREYFVSQIGPIKRVLLS--YNEGGKSTGIANITFKRA---GDAT 55
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLK 237
KA + +F+GR D R++K
Sbjct: 56 KAYD----KFNGR----IDDGNRKMK 73
|
This subfamily corresponds to the RRM of Yra1p and mlo3. Yra1p is an essential nuclear RNA-binding protein encoded by Saccharomyces cerevisiae YRA1 gene. It belongs to the evolutionarily conserved REF (RNA and export factor binding proteins) family of hnRNP-like proteins. Yra1p possesses potent RNA annealing activity and interacts with a number of proteins involved in nuclear transport and RNA processing. It binds to the mRNA export factor Mex67p/TAP and couples transcription to export in yeast. Yra1p is associated with Pse1p and Kap123p, two members of the beta-importin family, further mediating transport of Yra1p into the nucleus. In addition, the co-transcriptional loading of Yra1p is required for autoregulation. Yra1p consists of two highly conserved N- and C-terminal boxes and a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). This subfamily includes RNA-annealing protein mlo3, also termed mRNA export protein mlo3, which has been identified in fission yeast as a protein that causes defects in chromosome segregation when overexpressed. It shows high sequence similarity with Yra1p. . Length = 77 |
| >gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription factor N terminal domain | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 34 FSLKQPPPPSPTPPEPHN---LHRPPKSSRPTRSKIPKNPFKNLLNSATTHVP-SPPSHS 89
S +PP P TP P N R + S P + P +P L N + P S P S
Sbjct: 127 ASGFKPPTPPSTPCSPVNPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSS 186
Query: 90 LSAKLRLSSKLSPPPPPPPPPP 111
++ R +LS P P PPPP
Sbjct: 187 YPSEHRFQRQLSEPCLPFPPPP 208
|
The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites. Length = 336 |
| >gnl|CDD|241097 cd12653, RRM3_HuR, RNA recognition motif 3 in vertebrate Hu-antigen R (HuR) | Back alignment and domain information |
|---|
Score = 37.0 bits (85), Expect = 0.003
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IF+ NL + ++ + F FG + NV +I+ +N K GFGFV E++AM
Sbjct: 4 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNT-NKCKGFGFVTMTN--YEEAAMAI 60
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLK 237
+G ++L V + K
Sbjct: 61 ASLNGYRLGDKILQVSFKTSKSHK 84
|
This subgroup corresponds to the RRM3 of HuR, also termed ELAV-like protein 1 (ELAV-1), the ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. HuR has an anti-apoptotic function during early cell stress response. It binds to mRNAs and enhances the expression of several anti-apoptotic proteins, such as p21waf1, p53, and prothymosin alpha. HuR also has pro-apoptotic function by promoting apoptosis when cell death is unavoidable. Furthermore, HuR may be important in muscle differentiation, adipogenesis, suppression of inflammatory response and modulation of gene expression in response to chronic ethanol exposure and amino acid starvation. Like other Hu proteins, HuR contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an AU-rich RNA element (ARE). RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. . Length = 84 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGL 677
TY +++ GY G +A E F +++ +G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|221509 pfam12287, Caprin-1_C, Cytoplasmic activation/proliferation-associated protein-1 C term | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 12/157 (7%)
Query: 13 PHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKN--P 70
HT P P S+S + +Q P S P S S I N P
Sbjct: 86 SHTAEPRPQTDPIDPIQASMSLNSEQTPTSSSLPAASQPQVFQTGSKPLHSSGINVNAAP 145
Query: 71 FKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPP---PPPPPPPAEQLQEPQSQGNDEI 127
F+++ + P PP + + L+ ++ P P EQ + Q Q +
Sbjct: 146 FQSMQTVFNMNAPVPPVNEPES-LKQQNQYQASYNQGFSSQPQHPVEQTELQQEQLQTVV 204
Query: 128 ------PDAENRSPSSSLATSQEETEFRQEGKIFVGN 158
+++ S SQ+ F ++G+ F +
Sbjct: 205 GSFHSQDQQAHQAASGHQQPSQQGPGFGRQGQSFYNS 241
|
This family of proteins is found in eukaryotes. Proteins in this family are typically between 343 and 708 amino acids in length. This family is the C terminal region of caprin-1. Caprin-1 is a protein involved in regulating cellular proliferation. In mutated phenotypes, the G1 phase of the cell cycle is greatly lengthened, impairing normal proliferation. The C terminal region of caprin-1 contains RGG motifs which are characteristic of RNA binding domains. It is possible that caprin-1 functions through an RNA binding mechanism. Length = 319 |
| >gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1 | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 13/127 (10%)
Query: 8 SAPHFPHTPATLLTHKPH-HPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPT---- 62
P P + S L P P + K R +
Sbjct: 56 QTPRQSRRSKRAAHAYPSPERSPALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSD 115
Query: 63 --------RSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAE 114
+ + + + A PS + S + LS + P P P PP
Sbjct: 116 DEDEAERPSKRPRSDSISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHT 175
Query: 115 QLQEPQS 121
S
Sbjct: 176 PTDTAPS 182
|
Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 798 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| PLN03134 | 144 | glycine-rich RNA-binding protein 4; Provisional | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG0149 | 247 | consensus Predicted RNA-binding protein SEB4 (RRM | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG0122 | 270 | consensus Translation initiation factor 3, subunit | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| KOG0125 | 376 | consensus Ataxin 2-binding protein (RRM superfamil | 99.59 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.59 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.59 | |
| KOG0121 | 153 | consensus Nuclear cap-binding protein complex, sub | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG0113 | 335 | consensus U1 small nuclear ribonucleoprotein (RRM | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG0107 | 195 | consensus Alternative splicing factor SRp20/9G8 (R | 99.55 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 99.54 | |
| PF00076 | 70 | RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or | 99.53 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| PLN03213 | 759 | repressor of silencing 3; Provisional | 99.51 | |
| KOG0126 | 219 | consensus Predicted RNA-binding protein (RRM super | 99.51 | |
| TIGR01661 | 352 | ELAV_HUD_SF ELAV/HuD family splicing factor. These | 99.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| PLN03120 | 260 | nucleic acid binding protein; Provisional | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.47 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.47 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.47 | |
| PF14259 | 70 | RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or | 99.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| TIGR01645 | 612 | half-pint poly-U binding splicing factor, half-pin | 99.45 | |
| TIGR01659 | 346 | sex-lethal sex-lethal family splicing factor. This | 99.45 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 99.43 | |
| KOG4207 | 256 | consensus Predicted splicing factor, SR protein su | 99.43 | |
| KOG0148 | 321 | consensus Apoptosis-promoting RNA-binding protein | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.41 | |
| KOG0111 | 298 | consensus Cyclophilin-type peptidyl-prolyl cis-tra | 99.41 | |
| KOG0130 | 170 | consensus RNA-binding protein RBM8/Tsunagi (RRM su | 99.4 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| PLN03121 | 243 | nucleic acid binding protein; Provisional | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.37 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 99.37 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 99.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG0226 | 290 | consensus RNA-binding proteins [General function p | 99.35 | |
| KOG0114 | 124 | consensus Predicted RNA-binding protein (RRM super | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.33 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 99.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| KOG0108 | 435 | consensus mRNA cleavage and polyadenylation factor | 99.32 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.31 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 99.31 | |
| smart00362 | 72 | RRM_2 RNA recognition motif. | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 99.28 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| TIGR01628 | 562 | PABP-1234 polyadenylate binding protein, human typ | 99.27 | |
| smart00360 | 71 | RRM RNA recognition motif. | 99.26 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 99.26 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 99.25 | |
| KOG0145 | 360 | consensus RNA-binding protein ELAV/HU (RRM superfa | 99.25 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.22 | |
| smart00361 | 70 | RRM_1 RNA recognition motif. | 99.22 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 99.21 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 99.2 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| KOG0415 | 479 | consensus Predicted peptidyl prolyl cis-trans isom | 99.18 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 99.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| PF13893 | 56 | RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or | 99.16 | |
| TIGR01648 | 578 | hnRNP-R-Q heterogeneous nuclear ribonucleoprotein | 99.16 | |
| cd00590 | 74 | RRM RRM (RNA recognition motif), also known as RBD | 99.15 | |
| TIGR01649 | 481 | hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor | 99.15 | |
| COG0724 | 306 | RNA-binding proteins (RRM domain) [General functio | 99.15 | |
| KOG0109 | 346 | consensus RNA-binding protein LARK, contains RRM a | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| KOG0117 | 506 | consensus Heterogeneous nuclear ribonucleoprotein | 99.14 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.14 | |
| KOG0116 | 419 | consensus RasGAP SH3 binding protein rasputin, con | 99.13 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.12 | |
| KOG0131 | 203 | consensus Splicing factor 3b, subunit 4 [RNA proce | 99.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| KOG4208 | 214 | consensus Nucleolar RNA-binding protein NIFK [Gene | 99.09 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.08 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.07 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 99.06 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.06 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.05 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 99.04 | |
| KOG0127 | 678 | consensus Nucleolar protein fibrillarin NOP77 (RRM | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.0 | |
| KOG0146 | 371 | consensus RNA-binding protein ETR-3 (RRM superfami | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.99 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.99 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.98 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.98 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.98 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| KOG0153 | 377 | consensus Predicted RNA-binding protein (RRM super | 98.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.93 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.93 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.9 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 98.89 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 98.89 | |
| KOG0124 | 544 | consensus Polypyrimidine tract-binding protein PUF | 98.88 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 98.87 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 98.85 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 98.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.7 | |
| KOG0110 | 725 | consensus RNA-binding protein (RRM superfamily) [G | 98.66 | |
| KOG4212 | 608 | consensus RNA-binding protein hnRNP-M [RNA process | 98.63 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.62 | |
| KOG0533 | 243 | consensus RRM motif-containing protein [RNA proces | 98.61 | |
| KOG4209 | 231 | consensus Splicing factor RNPS1, SR protein superf | 98.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.6 | |
| KOG4454 | 267 | consensus RNA binding protein (RRM superfamily) [G | 98.6 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 98.58 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| KOG0123 | 369 | consensus Polyadenylate-binding protein (RRM super | 98.57 | |
| KOG4205 | 311 | consensus RNA-binding protein musashi/mRNA cleavag | 98.56 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 98.56 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.5 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.46 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| KOG0151 | 877 | consensus Predicted splicing regulator, contains R | 98.42 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.4 | |
| KOG4660 | 549 | consensus Protein Mei2, essential for commitment t | 98.36 | |
| KOG3671 | 569 | consensus Actin regulatory protein (Wiskott-Aldric | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.26 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.16 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.12 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.1 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.07 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.04 | |
| KOG1457 | 284 | consensus RNA binding protein (contains RRM repeat | 98.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.01 | |
| KOG0147 | 549 | consensus Transcriptional coactivator CAPER (RRM s | 98.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.0 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 97.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.98 | |
| PF04059 | 97 | RRM_2: RNA recognition motif 2; InterPro: IPR00720 | 97.94 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.93 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.88 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.87 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.86 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.81 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.76 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.76 | |
| KOG1995 | 351 | consensus Conserved Zn-finger protein [General fun | 97.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.74 | |
| PF11608 | 90 | Limkain-b1: Limkain b1; InterPro: IPR024582 This e | 97.74 | |
| PF08777 | 105 | RRM_3: RNA binding motif; InterPro: IPR014886 This | 97.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.72 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.7 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.69 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.69 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.68 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.68 | |
| KOG4206 | 221 | consensus Spliceosomal protein snRNP-U1A/U2B [RNA | 97.67 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.66 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.66 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 97.65 | |
| KOG1830 | 518 | consensus Wiskott Aldrich syndrome proteins [Cytos | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.64 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.63 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.62 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.61 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 97.6 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 97.51 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.49 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 97.49 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.48 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.45 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.42 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.42 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.41 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.4 | |
| KOG4210 | 285 | consensus Nuclear localization sequence binding pr | 97.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.34 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.31 | |
| KOG0106 | 216 | consensus Alternative splicing factor SRp55/B52/SR | 97.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.3 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.29 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.23 | |
| KOG3152 | 278 | consensus TBP-binding protein, activator of basal | 97.21 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.2 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.18 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.14 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 97.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.13 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.08 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.01 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.01 | |
| KOG1190 | 492 | consensus Polypyrimidine tract-binding protein [RN | 96.96 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.96 | |
| KOG1923 | 830 | consensus Rac1 GTPase effector FRL [Signal transdu | 96.93 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.91 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.9 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.87 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.87 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.86 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 96.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.8 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.75 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.73 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 96.63 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.63 | |
| KOG0120 | 500 | consensus Splicing factor U2AF, large subunit (RRM | 96.62 | |
| KOG1996 | 378 | consensus mRNA splicing factor [RNA processing and | 96.62 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 96.61 | |
| KOG2253 | 668 | consensus U1 snRNP complex, subunit SNU71 and rela | 96.6 | |
| KOG1548 | 382 | consensus Transcription elongation factor TAT-SF1 | 96.57 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.55 | |
| KOG0129 | 520 | consensus Predicted RNA-binding protein (RRM super | 96.52 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.48 | |
| PF08952 | 146 | DUF1866: Domain of unknown function (DUF1866) ; In | 96.47 | |
| KOG4211 | 510 | consensus Splicing factor hnRNP-F and related RNA- | 96.46 | |
| KOG1855 | 484 | consensus Predicted RNA-binding protein [General f | 96.46 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.44 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.43 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.4 | |
| PF14605 | 53 | Nup35_RRM_2: Nup53/35/40-type RNA recognition moti | 96.39 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.39 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 96.36 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.3 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.28 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.27 | |
| PF05172 | 100 | Nup35_RRM: Nup53/35/40-type RNA recognition motif; | 96.26 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.22 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.22 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.21 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.17 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.17 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.16 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.13 | |
| KOG0115 | 275 | consensus RNA-binding protein p54nrb (RRM superfam | 96.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.08 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.08 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.08 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.06 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.99 | |
| KOG2193 | 584 | consensus IGF-II mRNA-binding protein IMP, contain | 95.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.95 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 95.86 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.8 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.8 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.64 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.57 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.5 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.4 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.37 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.36 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.36 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.33 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.31 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.23 | |
| KOG1456 | 494 | consensus Heterogeneous nuclear ribonucleoprotein | 95.19 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 95.16 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.14 | |
| KOG0112 | 975 | consensus Large RNA-binding protein (RRM superfami | 95.06 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.98 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.89 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.86 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 94.86 | |
| KOG2202 | 260 | consensus U2 snRNP splicing factor, small subunit, | 94.85 | |
| PRK15319 | 2039 | AIDA autotransporter-like protein ShdA; Provisiona | 94.8 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.66 | |
| KOG0112 | 975 | consensus Large RNA-binding protein (RRM superfami | 94.61 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.56 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.45 | |
| KOG0105 | 241 | consensus Alternative splicing factor ASF/SF2 (RRM | 94.45 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.42 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 94.41 | |
| KOG1365 | 508 | consensus RNA-binding protein Fusilli, contains RR | 94.41 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.4 | |
| KOG2416 | 718 | consensus Acinus (induces apoptotic chromatin cond | 94.37 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.27 | |
| KOG2068 | 327 | consensus MOT2 transcription factor [Transcription | 94.21 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.19 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.19 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.14 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.84 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 93.77 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.62 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.44 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.29 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 93.15 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 93.06 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 93.0 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 92.94 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.93 | |
| PF08675 | 87 | RNA_bind: RNA binding domain; InterPro: IPR014789 | 92.63 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.58 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 92.52 | |
| PF03880 | 74 | DbpA: DbpA RNA binding domain ; InterPro: IPR00558 | 92.46 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.43 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 92.4 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.39 | |
| PF04847 | 184 | Calcipressin: Calcipressin; InterPro: IPR006931 Ca | 92.24 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.98 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.95 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.71 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.7 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.68 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 91.65 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.52 | |
| KOG4676 | 479 | consensus Splicing factor, arginine/serine-rich [R | 91.35 | |
| PF10309 | 62 | DUF2414: Protein of unknown function (DUF2414); In | 91.35 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 91.35 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 91.32 | |
| PF07174 | 297 | FAP: Fibronectin-attachment protein (FAP); InterPr | 91.28 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.28 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.8 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.6 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.59 | |
| PRK11901 | 327 | hypothetical protein; Reviewed | 90.34 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.3 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.18 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.15 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.62 | |
| PF15023 | 166 | DUF4523: Protein of unknown function (DUF4523) | 89.59 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 89.57 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.55 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 89.47 | |
| KOG4574 | 1007 | consensus RNA-binding protein (contains RRM and Pu | 89.32 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.03 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 88.95 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.55 | |
| KOG1925 | 817 | consensus Rac1 GTPase effector FHOS [Signal transd | 88.51 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.5 | |
| KOG0260 | 1605 | consensus RNA polymerase II, large subunit [Transc | 88.49 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.43 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.22 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.19 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.06 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.9 | |
| PF07174 | 297 | FAP: Fibronectin-attachment protein (FAP); InterPr | 87.88 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 87.84 | |
| KOG4210 | 285 | consensus Nuclear localization sequence binding pr | 87.78 | |
| KOG0260 | 1605 | consensus RNA polymerase II, large subunit [Transc | 87.67 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.66 | |
| PF15449 | 1287 | Retinal: Retinal protein | 87.49 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.1 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.09 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.05 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.02 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 86.81 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 86.75 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 86.65 | |
| KOG4410 | 396 | consensus 5-formyltetrahydrofolate cyclo-ligase [C | 86.57 | |
| KOG4285 | 350 | consensus Mitotic phosphoprotein [Cell cycle contr | 86.45 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.28 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 85.99 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=591.99 Aligned_cols=503 Identities=19% Similarity=0.317 Sum_probs=447.3
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
+.++|++ ++|+++|++|...+...| +...++.++..|.+.|..++|..+|+.|..
T Consensus 380 l~r~G~l---------~eAl~Lfd~M~~~gvv~~-------------~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--- 434 (1060)
T PLN03218 380 LLRDGRI---------KDCIDLLEDMEKRGLLDM-------------DKIYHAKFFKACKKQRAVKEAFRFAKLIRN--- 434 (1060)
T ss_pred HHHCcCH---------HHHHHHHHHHHhCCCCCc-------------hHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---
Confidence 4456666 889999999888777666 445667788899999999999999988864
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.+|..+|+.+
T Consensus 435 -pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 -PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred -CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHHcC
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE--CGFSPSIISYGCLINLYTKIG 485 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g 485 (798)
|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999976 578899999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 003749 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (798)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 565 (798)
++++|.++|++|.+.|+.++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003749 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (798)
Q Consensus 566 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 645 (798)
+|.+.|..++..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cC-------------------ChHHHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK----SG-------------------RMQSALA 702 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~ 702 (798)
..||+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+.+|.+ ++ ..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999876532 21 2367889
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccccch
Q 003749 703 VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPMLTK 778 (798)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 778 (798)
+|++|.+.|+.||..+|+.++.++++.+....+..+++.|...+..++..+|++||++|.+. .++|+.+...+.
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 99999999999999999999988888888999999999988888888999999999988443 357887755554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-68 Score=617.55 Aligned_cols=529 Identities=18% Similarity=0.254 Sum_probs=503.1
Q ss_pred hhhhc--cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhh-----------------cCCCHhhHHHHH
Q 003749 243 RARWV--AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERI-----------------KKPSRREFGLMV 303 (798)
Q Consensus 243 ~~~~~--~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li 303 (798)
...+| |+++|++ +.|.++|+++.+.|...|+.++.+|.+. ..||..+|+.++
T Consensus 124 ~n~li~~~~~~g~~---------~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 124 GNAMLSMFVRFGEL---------VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred HHHHHHHHHhCCCh---------HHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 34555 8999999 9999999999999999999999887542 258999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (798)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (798)
++|+..+++..+.+++..|.+.|+.+|..+||+||.+|++.|++++|.++|++|.+ +|.++||++|.+|++.|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999964 58899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
+|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 464 ECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543 (798)
Q Consensus 464 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 543 (798)
. +|..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.++..+
T Consensus 351 ~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 351 T----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred C----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 4 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 544 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999975 4788999999999999999999999999986 588999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAV 703 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (798)
.|.++.+.+++..|.+.|+.+|..++++||++|++.|++++|+++|+.+ .+|..+|++||.+|++.|+.++|+++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 57999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCccccccccccchhhhh
Q 003749 704 TKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK-QEGVQPDVHTYTSFINACSKAGDMQVRFSIPMLTKFYLF 782 (798)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 782 (798)
|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.||..+|++++++|++.|++++|.++.+.++..++
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999999999999999999 689999999999999999999999999999988888999
Q ss_pred hhhhh--heeecCCCCCC
Q 003749 783 SFIWF--LITMNSHKNDE 798 (798)
Q Consensus 783 ~~~w~--~~~~~~~~~~~ 798 (798)
..+|. |.+|.+|++.|
T Consensus 657 ~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 657 PAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHHHHHHHHHcCChH
Confidence 99996 99999998753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=579.24 Aligned_cols=482 Identities=17% Similarity=0.265 Sum_probs=459.9
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 293 KPSRREFGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
.++...|..+++.|++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|+.+|+.|.+ ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 35677899999999999999999999999999985 46777888999999999999999999999974 79999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
++.+|++.|++++|.++|++|.+.|..+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003749 452 EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS--SGIKHNMKTYSMLINGFLKLKDWANVFAVF 529 (798)
Q Consensus 452 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (798)
+++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|++||.+|++.|++++|+++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 578999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003749 530 EDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP 609 (798)
Q Consensus 530 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 609 (798)
+.|.+.|+.++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (798)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (798)
+..+|+.||.+|++.|++++|.++|++|.+.++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHcC
Q 003749 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR----R-------------------GDVWEAADLMQQMKQEG 746 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g 746 (798)
+|++.|++++|.+++++|.+.|+.||..+|++|+..|.+ . +..++|+.+|++|++.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999976432 1 23467999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCccccccccccch
Q 003749 747 VQPDVHTYTSFINACSKAGDMQVRFSIPMLTK 778 (798)
Q Consensus 747 ~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 778 (798)
+.||..||+.++..+++.+..+.+.++.+.+.
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 99999999999988888888888887765443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=584.32 Aligned_cols=501 Identities=19% Similarity=0.309 Sum_probs=474.6
Q ss_pred hhhhhHHHHHHHHHHhcCC----ccHHHHHHH-------------HHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 260 HKEREWHRREFRKAVETQP----ENWQAVVSA-------------FERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322 (798)
Q Consensus 260 ~~~~~~a~~~f~~~~~~~~----~~~~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (798)
.+..+.+..++..++.... ..++.++.. |+.+..+|..+|+.||.+|++.|++++|+++|++|
T Consensus 99 ~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M 178 (857)
T PLN03077 99 KRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM 178 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444778888887765533 224555554 55667899999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 003749 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI 402 (798)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (798)
...|+.||..+|+.++++|++.+++..+.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.. +|..
T Consensus 179 ~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~ 254 (857)
T PLN03077 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCI 254 (857)
T ss_pred HHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 4889
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 003749 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (798)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 482 (798)
+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.||.+|+
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 003749 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 562 (798)
+.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 335 k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 335 SLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred hcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 9999999999999996 368899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI 642 (798)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 642 (798)
+++.|.+.|..++..++++|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 999999999999999999999999999999999999999975 5889999999999999999999999999986 58
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003749 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNIL 722 (798)
Q Consensus 643 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 722 (798)
.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++++|+++|+++|++++|+.+|+++ .+|..+||+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~l 560 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNIL 560 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 4899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccccch
Q 003749 723 IDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPMLTK 778 (798)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 778 (798)
|.+|++.|+.++|+++|++|.+.|+.||..||+.|+.+|++.|++++|.++...++
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999976665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-60 Score=538.29 Aligned_cols=469 Identities=17% Similarity=0.260 Sum_probs=416.7
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARG-IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
+..+|+.+|..|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.+|..+|+.|+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 33456778888999999999999999998764 67899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (798)
.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.++..+|+.++.+|...|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999864 5888999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
.+.+++..+.+.|+.+|..+|+.||++|++.|++++|.++|++|.. +|..+|+.||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999989999999999999999999999999998864 588899999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 534 RDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHT 613 (798)
Q Consensus 534 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 613 (798)
+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|..+|..++++|+++|++.|++++|.++|++|.+ +|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999888999999999999999999999999998864 58889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 003749 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRN-EGLELDVFTYEALLKACC 692 (798)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 692 (798)
||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999975 588899999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCccccc
Q 003749 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSFINACSKAGDMQVRF 771 (798)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l~~~~~~~g~~~~a~ 771 (798)
+.|++++|.+++++| .+.|+..+|+.|+.+|...|+++.|.++++++.+ +.|+ ..+|..|++.|++.|++++|.
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 999999999988766 3578899999999999999999999999998874 4554 568999999999999999999
Q ss_pred cccccchhh
Q 003749 772 SIPMLTKFY 780 (798)
Q Consensus 772 ~~~~~~~~~ 780 (798)
++...++..
T Consensus 549 ~v~~~m~~~ 557 (697)
T PLN03081 549 KVVETLKRK 557 (697)
T ss_pred HHHHHHHHc
Confidence 987766643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-59 Score=532.87 Aligned_cols=463 Identities=19% Similarity=0.282 Sum_probs=439.4
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
|.++|+. ++|.++|+.+....+. .|+..+|+.++.+|++.++++.|.+++..|.+.|+
T Consensus 97 l~~~g~~---------~~Al~~f~~m~~~~~~-------------~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~ 154 (697)
T PLN03081 97 LVACGRH---------REALELFEILEAGCPF-------------TLPASTYDALVEACIALKSIRCVKAVYWHVESSGF 154 (697)
T ss_pred HHcCCCH---------HHHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 4455666 8999999988654332 36889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
.||..+||.|+.+|++.|++++|+++|++|.+ +|.++|++++.+|++.|++++|+++|++|.+.|..++..+|..+
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 99999999999999999999999999999964 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (798)
+.+|++.|+.+.+.+++..+.+.|+.+|..+|+.|+++|++.|++++|.++|++|.+ +|.++||.||.+|++.|+.
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999964 5999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|..+|+.|+.+|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH
Q 003749 568 QKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL-AGISPNE 646 (798)
Q Consensus 568 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p~~ 646 (798)
.+ +|..+|++||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 64 589999999999999999999999999999999999999999999999999999999999999986 5899999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
.+|++++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..+|+.|++.|
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y 538 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLY 538 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHH
Confidence 99999999999999999999998765 678999999999999999999999999999998765 44678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC
Q 003749 727 ARRGDVWEAADLMQQMKQEGVQ 748 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~ 748 (798)
++.|++++|.+++++|++.|+.
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999975
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=313.36 Aligned_cols=505 Identities=14% Similarity=0.096 Sum_probs=431.4
Q ss_pred ccCCCccccccchhhhhhHHHHHHHHHHhcCCccH---HH-------------HHHHHHhhc---CCCHhhHHHHHHHHH
Q 003749 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENW---QA-------------VVSAFERIK---KPSRREFGLMVNYYA 307 (798)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~---~~-------------~~~~~~~~~---~~~~~~~~~li~~~~ 307 (798)
+|.+.|+. ++|.+.|++++..++.+. .. .+..|.+.. ..+......++..|.
T Consensus 372 ~~~~~g~~---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 372 AYLALGDF---------EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHCCCH---------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 37778887 899999999988877532 11 122222211 123345566788899
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
+.|++++|+.+++.+.... ..+..+++.+...|.+.|++++|.++|+++.+.. +.+...+..++..+...|++++|++
T Consensus 443 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998863 5577889999999999999999999999998864 3467788899999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.|+++...+. .+..++..++..+.+.|++++|...++++.+.+ +.+...+..++..|...|++++|+.+++++.+..
T Consensus 521 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 9999988754 377888999999999999999999999998875 4567788899999999999999999999998754
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
..+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|..+|+++.+.... +..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 3477899999999999999999999999998764 446778888999999999999999999999887544 67889999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (798)
Q Consensus 548 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 627 (798)
+..+...|++++|..+++.+...... +...+..+...+.+.|++++|...|+.+...+. +..++..++.++.+.|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCH
Confidence 99999999999999999999887643 667788888999999999999999999988653 447777889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 628 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
++|.+.++++.+.. +.+...+..+...|...|++++|.++|+++.+.... +..+++.++..+.+.|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 99999999998864 567888999999999999999999999999988654 78899999999999999 8899999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccc
Q 003749 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPM 775 (798)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~ 775 (798)
.+.. +.+..++..++.++...|++++|+++++++++.+.. |..++..++.++.+.|+.++|.++..
T Consensus 830 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 830 LKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8865 567778899999999999999999999999997644 88999999999999999999988744
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-30 Score=307.19 Aligned_cols=504 Identities=14% Similarity=0.099 Sum_probs=392.2
Q ss_pred ccCCCccccccchhhhhhHHHHHHHHHHhcCCccH---HHH-------------HHHHHhh---cCCCHhhHHHHHHHHH
Q 003749 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENW---QAV-------------VSAFERI---KKPSRREFGLMVNYYA 307 (798)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~---~~~-------------~~~~~~~---~~~~~~~~~~li~~~~ 307 (798)
++.+.|+. ++|...|.+++..++.+. ..+ +..|.+. ...+...+..+...+.
T Consensus 338 ~~~~~g~~---------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 338 IQLRLGRV---------DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408 (899)
T ss_pred HHHHCCCH---------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 37778887 899999999988877532 222 2222222 1224556667777777
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
..|++++|++.|+.+.+.. .........++..|.+.|++++|+.+++++.+. .+.+..+|..++..|...|++++|++
T Consensus 409 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 8888888888888887764 223445566777788888888888888888765 34467788888888888888888888
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.|+++.+.+. .+...+..++..+...|++++|.+.++++.+.+ +.+..++..+...+...|+.++|..+|+++.+.+.
T Consensus 487 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 564 (899)
T TIGR02917 487 AFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564 (899)
T ss_pred HHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 8888877643 356677778888888888888888888888764 44677888888888888888888888888877643
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
.+...+..++..|.+.|++++|+.+++++.+.. +.+...|..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 565 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 641 (899)
T TIGR02917 565 -QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLL 641 (899)
T ss_pred -cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 356677788888888888888888888887653 456778888888888888899988888888876543 56677888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQM 627 (798)
Q Consensus 548 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 627 (798)
..++...|++++|..+|+++...... +..++..++..+...|++++|.++++.+.+... .+...+..+...+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCH
Confidence 88888888899998888888876533 567788888888888899999888888887654 3677778888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 628 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
++|++.|+++...+ |+..++..++.++.+.|++++|.+.+.++.+.... +...+..+...|.+.|++++|..+|+++
T Consensus 720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999998888764 44567777888888899999999998888877543 7788888888888899999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccccc
Q 003749 708 SAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIP 774 (798)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~ 774 (798)
.+.. +.+..+++.+++.+...|+ .+|+.+++++.+.. .-+..++..+...+...|++++|.++.
T Consensus 797 ~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 797 VKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8775 6678888888999988888 78999999888752 235667788888889999988888873
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-23 Score=244.34 Aligned_cols=511 Identities=11% Similarity=0.072 Sum_probs=334.4
Q ss_pred hhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHH-HHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003749 245 RWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVV-SAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMR 323 (798)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (798)
..++...|+. ++|.+.++++.+.+|.+..... ...-....++......+...+...|++++|++.|+.+.
T Consensus 69 ~~~~l~~g~~---------~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 69 FRLLLRQGDS---------DGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred HHHHHhCCCH---------HHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 3345666777 9999999999999998643211 11112233444445556667778888888888888887
Q ss_pred HCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----
Q 003749 324 ARGIEPTLHV-YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT---- 398 (798)
Q Consensus 324 ~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---- 398 (798)
+.+ .++... ...+.......|++++|++.|+++.+.. +-+...+..+...+...|++++|+..|+++......
T Consensus 140 ~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 140 NGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred cCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 653 333221 1111122234578888888888888763 336677778888888888888888888876543110
Q ss_pred ----------------------------CChhh---------------------HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 399 ----------------------------LNAII---------------------YGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 399 ----------------------------~~~~~---------------------~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
++... ...+...+...|++++|+..|++.++
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00000 00123445677888888888888887
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHH------------HHHHHHHHHcCCHHHHHHHHHH
Q 003749 430 EGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISY------------GCLINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~ 496 (798)
.. +.+..++..|..+|.+.|++++|+..|++..+..... +...| ..+...+.+.|++++|+..|++
T Consensus 298 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 AN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 64 3467778888888888888888888888877653221 11111 1223456778888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH------------------------------
Q 003749 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNN------------------------------ 546 (798)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~------------------------------ 546 (798)
+.+.. +.+...+..+..+|...|++++|++.|+++.+.... +...+..
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 87764 335566667778888888888888888887765433 2222222
Q ss_pred ------------HHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 547 ------------IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (798)
Q Consensus 547 ------------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 614 (798)
+...+...|++++|+..|++..+.... +...+..+...|.+.|++++|+..|+++.+.... +...+
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~ 532 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQV 532 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 233445667888888888887776543 4455666777788888888888888887764332 33333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---------------------------------------CCCCCHHHHHHHHHH
Q 003749 615 NALILGLVEKRQMEKAIEILDEMTLA---------------------------------------GISPNEHTYTTIMHG 655 (798)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~---------------------------------------~~~p~~~t~~~li~~ 655 (798)
..+...+...++.++|+..++.+... ..+.+...+..+...
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHH
Confidence 33322333344444444443322100 013344556677788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003749 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEA 735 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 735 (798)
+.+.|++++|++.|+++++.... +...+..++.+|...|++++|+..++.+.+.. +.+...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHH
Confidence 88888889999888888887544 67788888888888899999998888877654 44566777788888888999999
Q ss_pred HHHHHHHHHcCCC--C---CHHHHHHHHHHHHHcCCccccccc
Q 003749 736 ADLMQQMKQEGVQ--P---DVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 736 ~~~~~~m~~~g~~--p---d~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
.+++++++...-. + +...+..+...+...|+.++|...
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998888764211 1 235666777888888888888777
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-23 Score=245.22 Aligned_cols=487 Identities=11% Similarity=0.033 Sum_probs=355.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---------
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY--------- 334 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------- 334 (798)
+.|.+.+.+++..+|. ++..+..++..+.+.|+.++|.+.++++.+.. +.+...+
T Consensus 45 d~a~~~l~kl~~~~p~---------------~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 45 DLVRQSLYRLELIDPN---------------NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence 8899999999999997 77778889999999999999999999999984 2232222
Q ss_pred -------HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 003749 335 -------TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (798)
Q Consensus 335 -------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (798)
..+...+...|++++|++.|+++.+.+ +++.. ....+.......|++++|++.|+++...... +...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 334457889999999999999999764 33332 2222222233569999999999999988543 7778889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--------------------------------CChh-----------------
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGID--------------------------------APID----------------- 437 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~--------------------------------~~~~----------------- 437 (798)
+..++...|+.++|+++++++.+.... ++..
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988653210 0000
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH---
Q 003749 438 ----IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH-NMKTY--- 509 (798)
Q Consensus 438 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~--- 509 (798)
....+...+...|++++|+..|++.++.... +...+..|..+|.+.|++++|+..|++..+..... ....|
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 0011245567889999999999999986432 77889999999999999999999999998764221 11112
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHH
Q 003749 510 ---------SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFM 580 (798)
Q Consensus 510 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 580 (798)
..+...+.+.|++++|+..|+++++.... +...+..+..++...|++++|++.|+++.+.... +...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 12245677899999999999999987554 6677888999999999999999999999876432 222222
Q ss_pred HH------------------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 581 PI------------------------------------------IHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (798)
Q Consensus 581 ~l------------------------------------------i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 618 (798)
.+ ...+...|++++|+..|+++.+.... +...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 22 23345678888888888888876543 566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----------------------
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----------------------- 675 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------- 675 (798)
..|.+.|++++|+..++++.+.. +.+...+..+...+...++.++|+..++.+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88888899999998888887653 223333333333344445555554444332110
Q ss_pred ----------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 676 ----------------GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 676 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (798)
....+...+..+...+.+.|++++|+..++++.+.. +.+...+..++.+|...|++++|++.+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 012244566777888888899999999999888775 567788888899999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHHcCCcccccccccc
Q 003749 740 QQMKQEGVQP-DVHTYTSFINACSKAGDMQVRFSIPML 776 (798)
Q Consensus 740 ~~m~~~g~~p-d~~~~~~l~~~~~~~g~~~~a~~~~~~ 776 (798)
+...+. .| +..++..+..++...|+.++|.++...
T Consensus 661 ~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 661 AKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 887753 33 455677788888888998888877443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-23 Score=209.99 Aligned_cols=480 Identities=13% Similarity=0.120 Sum_probs=383.6
Q ss_pred HHHHHHHhcCCc--cHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003749 268 REFRKAVETQPE--NWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR 345 (798)
Q Consensus 268 ~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 345 (798)
..|...++.++. .-+.+++.|..-..-+ .....|..-..+.|++.+|.+.....-+++ ..+......+-..+.+..
T Consensus 19 ~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~-~~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~ 96 (966)
T KOG4626|consen 19 EAFSRKLDQSVSSSGSSSVLQQFNKTHEGS-DDRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGS 96 (966)
T ss_pred HHHHHHhccCcccccchHHHHHhccCCccc-hhHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhccc
Confidence 555566655443 2456666665443322 224566777789999999999887776664 333444444456677777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 003749 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVR 425 (798)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (798)
+++....--...++.. +--.++|..+...+...|++++|+.+|+.+++.... ....|..+..++...|+.+.|.+.|.
T Consensus 97 r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 97 RLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred chhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 7777666555555543 336789999999999999999999999999998544 78899999999999999999999999
Q ss_pred HHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003749 426 DMEEEGIDAP-IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH 504 (798)
Q Consensus 426 ~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 504 (798)
+.++.+ |+ ....+.+.......|++++|...|.+..+.... =.+.|..|...+-..|+...|++.|++..+. .|
T Consensus 175 ~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 175 EALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred HHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 999874 33 445566777778899999999999998885321 2568999999999999999999999999885 44
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003749 505 N-MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPII 583 (798)
Q Consensus 505 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 583 (798)
+ ...|-.|...|...+.++.|+..|.+.....+. ..+.+..|...|...|.++-|+..|++.++.... -...|+.|.
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~Nla 327 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLA 327 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHH
Confidence 4 457888999999999999999999998876443 5678888999999999999999999999987644 457899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 003749 584 HGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDT 662 (798)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~ 662 (798)
.++...|++.+|.+.|++.+..... .....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccH
Confidence 9999999999999999999987543 6788899999999999999999999998875 343 46789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 663 GKAFEYFTKLRNEGLELD-VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 663 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
++|+..|+++++.. |+ ...|+.+...|...|+.+.|...+.+++..+ +-=....+.|...|..+|++.+|+.-+++
T Consensus 405 ~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 405 DDAIMCYKEALRIK--PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHHHHHhcC--chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 99999999998754 44 6789999999999999999999999998865 33456889999999999999999999999
Q ss_pred HHHcCCCCCH-HHHHHHHHHHHHcCC
Q 003749 742 MKQEGVQPDV-HTYTSFINACSKAGD 766 (798)
Q Consensus 742 m~~~g~~pd~-~~~~~l~~~~~~~g~ 766 (798)
.+. ++||. ..+-.++.++.-..+
T Consensus 482 aLk--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 482 ALK--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HHc--cCCCCchhhhHHHHHHHHHhc
Confidence 986 67773 445555544444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=203.74 Aligned_cols=432 Identities=13% Similarity=0.099 Sum_probs=259.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|.+-.+-+.+.|+.+ ....-.+-.++.+..+++.....-...++.. .--..+|..+.+.+-.
T Consensus 65 ~~a~~h~nmv~~~d~t~---------------~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 65 KQAEKHCNMVGQEDPTN---------------TERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHhHhhccCCCc---------------ccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 66776666666666542 1122222334444444444443333333331 2344556666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (798)
.|++++|+.+++.+++... -....|..+..++...|+.+.|...|.+.++.+.. .......+...+-..|++++|...
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHH
Confidence 6666666666666666432 14556666666666666666666666666554221 222333344555556666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003749 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS-IISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502 (798)
Q Consensus 424 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 502 (798)
+.+.++.. +--..+|+.|...+...|+...|+..|++.... +|+ ...|..|...|...+.+++|+..|.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 66666543 223455666666666666666666666666653 233 345666666666666666666666666553
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHH
Q 003749 503 KH-NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMP 581 (798)
Q Consensus 503 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 581 (798)
.| ..+.+..|...|...|+++-|+..|++.++..+. -...|+.|..++-..|+..+|...|.+.+..... .....+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 23 3445555666666667777777777766664333 3456777777777777777777777776665432 4456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 003749 582 IIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLG 660 (798)
Q Consensus 582 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g 660 (798)
|...|.+.|.+++|..+|....+.... -...+|.|...|-+.|++++|+..+++.++. .|+ ...|+.+...|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhh
Confidence 777777777777777777776663221 2455677777777777777777777777653 444 356777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 003749 661 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN-TFVYNILIDGW 726 (798)
Q Consensus 661 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 726 (798)
+.+.|+..+.+++..+.. -...++.|...|...|++.+|+.-++..++.+ || ...|..++.++
T Consensus 437 ~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklk--PDfpdA~cNllh~l 500 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLK--PDFPDAYCNLLHCL 500 (966)
T ss_pred hHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccC--CCCchhhhHHHHHH
Confidence 777777777777765432 35566777777777777777777777777654 33 33444444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-23 Score=218.54 Aligned_cols=327 Identities=14% Similarity=0.166 Sum_probs=235.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 003749 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN---MKTYSMLINGFLKLK 520 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~ 520 (798)
..+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+.......+ ...+..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344455566666666666655422 1344556666666666666666666666655321111 234555666666667
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHH
Q 003749 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~ 596 (798)
++++|..+|+++.+... .+..++..++.++.+.|++++|.+.++.+.+.+..... ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777766665422 24556666777777777777777777776665432211 13445666778889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.+|+++.+.... +...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++++.+..
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999888875432 5667778888899999999999999998876422234678889999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR---RGDVWEAADLMQQMKQEGVQPDVHT 753 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~ 753 (798)
|+...+..++..+.+.|++++|..+++++.+.. |+...++.++..+.. .|+.++++.++++|.+.++.+|..
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~- 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR- 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence 455667889999999999999999999998864 888899988888775 568999999999999988888776
Q ss_pred HHHHHHHHHHcCCccccccccccchhhhhhhhhhheeecCCCC
Q 003749 754 YTSFINACSKAGDMQVRFSIPMLTKFYLFSFIWFLITMNSHKN 796 (798)
Q Consensus 754 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~ 796 (798)
..|.+.| +......|.|+.|.+|+-
T Consensus 355 -----~~c~~cg-------------~~~~~~~~~c~~c~~~~~ 379 (389)
T PRK11788 355 -----YRCRNCG-------------FTARTLYWHCPSCKAWET 379 (389)
T ss_pred -----EECCCCC-------------CCCccceeECcCCCCccC
Confidence 5588888 556666677999999974
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-20 Score=210.08 Aligned_cols=431 Identities=10% Similarity=-0.025 Sum_probs=304.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.+..+.+.|.+.|++++|+..|+++++. .|+...|..+..+|.+.|++++|++.+++.++.+ +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556788899999999999999999986 6788899999999999999999999999999874 336788999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (798)
..|++++|+..|..+...+...+.. ...++..+.. ..+........+.. +.+...+..+...+ ..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 9999999999998776653322222 1122221111 22333333333332 22233333333322 2111111111
Q ss_pred HHHHHHHCCCCcC-HHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 458 VFERLKECGFSPS-IISYGCLINL---YTKIGKVSKALEVSKVMKSSG-I-KHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 458 ~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
.+.+..+. .++ ...+..+... ....+++++|++.|+++.+.+ . ......|..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12211111 111 0111111111 123468889999999988764 1 22455677788888889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (798)
Q Consensus 532 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 611 (798)
.++.... +...|..+...+...|++++|+..|+++...... +...|..+...+...|++++|+..|++.++.... +.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 8876443 4667888888889999999999999998877543 5677888888899999999999999999886543 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVF------TYE 685 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~ 685 (798)
..+..+..++.+.|++++|+..|++.++.. +.+...|+.+..++...|++++|++.|++.++.....+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 777788888899999999999999888753 4456788888899999999999999999988764331111 122
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
..+..+...|++++|..++++....+ +.+...+..|+.++.+.|++++|+++|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22233344689999999999988765 455667888999999999999999999998764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-19 Score=206.42 Aligned_cols=488 Identities=12% Similarity=0.051 Sum_probs=297.9
Q ss_pred hhhHHHHhhhhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHH
Q 003749 236 LKNKAEVRARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRA 315 (798)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (798)
+....++.....+...|+. ++|+..|+++++.+|. +...+..|...|.+.|++++|
T Consensus 42 ~~~~~~f~~a~~~~~~Gd~---------~~A~~~l~~Al~~dP~---------------n~~~~~~LA~~yl~~g~~~~A 97 (987)
T PRK09782 42 FVIYPRLDKALKAQKNNDE---------ATAIREFEYIHQQVPD---------------NIPLTLYLAEAYRHFGHDDRA 97 (987)
T ss_pred HHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHH
Confidence 3333444444446666776 8999999999999998 667778899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHH
Q 003749 316 RQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--------FAKMGNAEAADH 387 (798)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~ 387 (798)
+..+++..+. .|+...|..++..+ +++++|..+++++.+.. +-+..++..+... |.+.++..++++
T Consensus 98 ~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~ 171 (987)
T PRK09782 98 RLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN 171 (987)
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 9999999987 45555554444333 88899999999998874 3356666666665 665544444444
Q ss_pred HHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 003749 388 WFEEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEEKCLIVFERLKEC 465 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 465 (798)
.......++.. ....+..+|.+.|++++|++++.++.+.+ ..+......|..+|.. .++ +++..++...
T Consensus 172 ----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~--- 242 (987)
T PRK09782 172 ----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG--- 242 (987)
T ss_pred ----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh---
Confidence 22222232333 34444888888999999999999988876 3455556677777777 366 7777775532
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHH--HHH----------------------------HHH
Q 003749 466 GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK-HNMKT--YSM----------------------------LIN 514 (798)
Q Consensus 466 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~--~~~----------------------------ll~ 514 (798)
++-|...+..++..|.+.|+.++|.++++++...... |...+ |+. ++.
T Consensus 243 -lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 243 -IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLP 321 (987)
T ss_pred -cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHH
Confidence 2347777888888888888888888777766433111 11111 000 011
Q ss_pred HHH---------------------------------------------------------------hcCCHHHHHHHHHH
Q 003749 515 GFL---------------------------------------------------------------KLKDWANVFAVFED 531 (798)
Q Consensus 515 ~~~---------------------------------------------------------------~~~~~~~a~~~~~~ 531 (798)
.+. +.|+.++|.++|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~ 401 (987)
T PRK09782 322 VLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQ 401 (987)
T ss_pred HHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111 22344444444443
Q ss_pred HHHc-C-CCCCHHHHHHHHHHHHcC-------------------------------------------------------
Q 003749 532 VMRD-G-LKPDVVLYNNIIRAFCGM------------------------------------------------------- 554 (798)
Q Consensus 532 ~~~~-g-~~~~~~~~~~li~~~~~~------------------------------------------------------- 554 (798)
.... + -..+....+.|+..|.+.
T Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~ 481 (987)
T PRK09782 402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWN 481 (987)
T ss_pred hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHH
Confidence 3221 0 001112222333333332
Q ss_pred --------CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 555 --------GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ 626 (798)
Q Consensus 555 --------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 626 (798)
++.++|+..|.+..... |+......+...+.+.|++++|...|+++... .++...+..+..++.+.|+
T Consensus 482 ~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 482 RLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC
Confidence 34444555444444332 23222222333334666777777766665443 2233344455556666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003749 627 MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKE 706 (798)
Q Consensus 627 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (798)
.++|..++++.++.. ..+...+..+...+...|++++|...++++++.. |+...+..+..++.+.|++++|+..+++
T Consensus 558 ~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 558 GAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777666543 2222233333334445577777777777777654 3566777777777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCccccccc
Q 003749 707 MSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQP-DVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
..... +.+...++.+..++...|++++|+.++++..+. .| +...+..+..++...|+.++|...
T Consensus 635 AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 635 ALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77765 556667777777777777777777777777764 33 456677777777777777766654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-18 Score=196.19 Aligned_cols=425 Identities=13% Similarity=0.005 Sum_probs=304.2
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
|.+.|+. +.|++.|.+++..+|. ...|..+..+|...|++++|++.++..++..
T Consensus 137 ~~~~~~~---------~~Ai~~y~~al~~~p~----------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~- 190 (615)
T TIGR00990 137 AYRNKDF---------NKAIKLYSKAIECKPD----------------PVYYSNRAACHNALGDWEKVVEDTTAALELD- 190 (615)
T ss_pred HHHcCCH---------HHHHHHHHHHHhcCCc----------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-
Confidence 5566776 9999999999988773 3467888999999999999999999999974
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
+.+...|..+..+|...|++++|+..|..+...+-. +......++..+.+ ..+........+... .+...+..+
T Consensus 191 p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~ 264 (615)
T TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFV 264 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHH
Confidence 446678999999999999999999999877654311 22222222222211 223333333333322 122333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCc-CHHHHHHHHHHHH
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY---TIIGNEEKCLIVFERLKECG-FSP-SIISYGCLINLYT 482 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~ 482 (798)
.. |............+.+..+.... ....+..+...+ ...+++++|++.|++..+.+ ..+ +...|+.+..++.
T Consensus 265 ~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 265 GN-YLQSFRPKPRPAGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC 342 (615)
T ss_pred HH-HHHHccCCcchhhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 22 22221222222222221111100 011112221111 33578999999999998764 223 4567888889999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 003749 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH 562 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 562 (798)
..|++++|+..|++.++.. +.+...|..+...+...|++++|+..|+++++.... +..+|..+...+...|++++|+.
T Consensus 343 ~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998863 234668888889999999999999999999887554 67889999999999999999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 563 IVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI 642 (798)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 642 (798)
.|++.+..... +...+..+..++.+.|++++|+..|++..+.... +...++.+..++...|++++|++.|++.++...
T Consensus 421 ~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 421 DYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99999887643 5667778888999999999999999999876433 678899999999999999999999999887532
Q ss_pred CCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 643 SPNEH------TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 643 ~p~~~------t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
..+.. .++..+..+...|++++|.++++++++.... +...+..+..++...|++++|..+|++..+..
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 21111 1222233344579999999999999887643 55678999999999999999999999998753
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-19 Score=185.98 Aligned_cols=488 Identities=13% Similarity=0.104 Sum_probs=363.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHH--H--------------h------hcCCCHhhHHHHHHHHHHcCChHHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAF--E--------------R------IKKPSRREFGLMVNYYARRGDMHRARQTFEN 321 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~--~--------------~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (798)
+.|+..|.++++.||.+..+++... . . ...-|+...+.|.+.|.-.|++..+..+.+.
T Consensus 216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 7899999999999997766665431 1 0 1134677788999999999999999999999
Q ss_pred HHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003749 322 MRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL 399 (798)
Q Consensus 322 ~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 399 (798)
+...-.. .-...|..+.++|-..|++++|...|.+..+..-.--+..+.-|+.+|.+.|+++.+.-.|+++.+.. +.
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~ 374 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PN 374 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cc
Confidence 9886311 12235888899999999999999999887765322114456678889999999999999999998873 44
Q ss_pred ChhhHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCcCH
Q 003749 400 NAIIYGNIIYAQCQTR----NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK----ECGFSPSI 471 (798)
Q Consensus 400 ~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 471 (798)
+..+...|...|...+ ..++|..++.+..+.- ..|...|..+...+....-+.. +.+|.... ..+-..-.
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCH
Confidence 6777778888887775 5577777777777653 5577888888888876665555 77776654 33444567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 472 ISYGCLINLYTKIGKVSKALEVSKVMKSS---GIKHNM------KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (798)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (798)
...|.+...+...|++++|...|+..... ...++. .+--.+...+-..++++.|.+.|..+.+..+. -..
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId 531 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YID 531 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHH
Confidence 88999999999999999999999988765 122222 22333556666778999999999999886332 334
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 003749 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS-GCIPTVHTFNALILGL 621 (798)
Q Consensus 543 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~ 621 (798)
.|-.++.+....++..+|..++++....+- .+...++.+...+.+..++..|.+-|..+.+. ...+|..+.-+|.+.|
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 455555444556788899999999887653 25666777777888888888888877766543 1224555555555544
Q ss_pred Hh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 622 VE------------KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (798)
Q Consensus 622 ~~------------~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (798)
.+ .+..++|+.+|.+.+... +-|...=|-+..+++..|++.+|..+|.++++.... +..+|..+.+
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah 688 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAH 688 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHH
Confidence 32 356788999999888764 556677788888999999999999999999987542 5568889999
Q ss_pred HHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 690 ACCKSGRMQSALAVTKEMSAQK-IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFI 758 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~ 758 (798)
+|..+|++..|+++|+.....- -..+..+...|..++.+.|++.+|.+.+...+..-..-..+.||..+
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999999999999999887543 24567789999999999999999999999888764443455666544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-18 Score=185.09 Aligned_cols=502 Identities=11% Similarity=0.110 Sum_probs=342.1
Q ss_pred hHHHHHHHHHHhcCCcc------------HH-----HHHHHHHhhcCCCHhhHHHHHHHH---H---HcCChHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPEN------------WQ-----AVVSAFERIKKPSRREFGLMVNYY---A---RRGDMHRARQTFE 320 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~------------~~-----~~~~~~~~~~~~~~~~~~~li~~~---~---~~g~~~~A~~~~~ 320 (798)
-.|+..|.+++..+|.. |+ .++.+|.+.-..++...++++... . ..-.+..++.++.
T Consensus 181 ~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~ 260 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQ 260 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 78999999988888753 22 344445554433433333322211 1 1223556666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003749 321 NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (798)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (798)
..-..+ .-|.++.+.|.+.|.-.|++..++.+..-++..-.. .-...|..++++|...|++++|...|.+.......
T Consensus 261 ~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 261 RAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 666554 446677778888888888888888887777664211 12345777888888888888888888877765433
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCcCHHHH
Q 003749 399 LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG----NEEKCLIVFERLKECGFSPSIISY 474 (798)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 474 (798)
.-+..+.-+.+.|.+.|+++.+...|+++.+.. +.+..+...|...|...+ ..+.|..++.+..+.. ..|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 235556667788888888888888888887763 445666666777776664 5566777777766653 3366777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC------CH
Q 003749 475 GCLINLYTKIGKVSKALEVSKVMK----SSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD---GLKP------DV 541 (798)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~------~~ 541 (798)
-.+..++-...-+.. +.+|..+. ..+........|.+...+...|++..|...|+..... ...+ +.
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 766666655544443 66655443 3444566777888888888888888888888776654 1112 22
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 542 VLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (798)
Q Consensus 542 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 621 (798)
.+-..+...+...++++.|.++|..+.+..+. -...|.-++......+...+|...++.+...+- .+...++.+...+
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLH 574 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHH
Confidence 23445666777778888888888888876422 122233333222234567788888888776543 3666777777788
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 622 VEKRQMEKAIEILDEMTLA-GISPNEHTYTTIMHGYAS------------LGDTGKAFEYFTKLRNEGLELDVFTYEALL 688 (798)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 688 (798)
.+...+..|.+-|...... ...+|..+.-.|.+.|.. .+..++|+++|.+++..... |...-|.+.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchh
Confidence 8888888888876665543 223566666666665542 34578899999999988765 788889999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCc
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQPDVHTYTSFINACSKAGDM 767 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~l~~~~~~~g~~ 767 (798)
-+++..|++.+|..+|.+..+.. ..+..+|-.+..+|...|++..|+++|+..... +-.-+..+...|..++...|.+
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999998754 235668889999999999999999999986654 4444678889999999999998
Q ss_pred cccccc
Q 003749 768 QVRFSI 773 (798)
Q Consensus 768 ~~a~~~ 773 (798)
.+|.+.
T Consensus 733 ~eak~~ 738 (1018)
T KOG2002|consen 733 QEAKEA 738 (1018)
T ss_pred HHHHHH
Confidence 877665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=199.14 Aligned_cols=301 Identities=15% Similarity=0.152 Sum_probs=162.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcC
Q 003749 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYAQCQTR 415 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 415 (798)
..+...|++++|+..|+++.+.+ +.+..++..++..|.+.|++++|+.+++.+.......+ ..++..++..|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34445566666666666666643 22445566666666666666666666666654321111 123344444444444
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 416 NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSK 495 (798)
Q Consensus 416 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (798)
++++|+.+|+++.+.. +. +..+++.++.++.+.|++++|++.++
T Consensus 122 ~~~~A~~~~~~~l~~~-~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DF-----------------------------------AEGALQQLLEIYQQEKDWQKAIDVAE 165 (389)
T ss_pred CHHHHHHHHHHHHcCC-cc-----------------------------------hHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 4444444444444331 12 33444445555555555555555555
Q ss_pred HHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 496 VMKSSGIKHN----MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 496 ~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
.+.+.+..+. ...+..+...+.+.|++++|..+|+++.+.... +...+..++..+.+.|++++|.++|+++...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 166 RLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 5444321111 112333444555556666666666655554322 33445555566666666666666666665543
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ 651 (798)
......++..++.+|.+.|++++|...++++.+.. |+...+..++..+.+.|++++|..+|+++.+. .|+..++..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 22223345556666667777777777777666543 34444566666677777777777777766654 466666666
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHcCCCCCH
Q 003749 652 IMHGYAS---LGDTGKAFEYFTKLRNEGLELDV 681 (798)
Q Consensus 652 li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 681 (798)
++..+.. .|+.++++.+++++.+.++.++.
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6665553 34667777777777665544443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-17 Score=190.09 Aligned_cols=493 Identities=10% Similarity=0.015 Sum_probs=341.7
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHH-----H----------------HHH-HhhcCC--CHhhHHHH-HHHHHHcCChHHH
Q 003749 261 KEREWHRREFRKAVETQPENWQAV-----V----------------SAF-ERIKKP--SRREFGLM-VNYYARRGDMHRA 315 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~-----~----------------~~~-~~~~~~--~~~~~~~l-i~~~~~~g~~~~A 315 (798)
+..+.|...|++++..+|.+-... . .+. .+...+ .......+ .+.|.+.|+|++|
T Consensus 122 ~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 334788999999998888652211 1 011 112223 34444444 7888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003749 316 RQTFENMRARGIEPTLHVYTNLIHAYAV-GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (798)
++++.++.+.+ ..+......|..+|.. .++ +++..+++.. +.-+...+..++..|.+.|+.++|.++++++..
T Consensus 202 i~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999886 3455556777778877 366 7777776542 234788888999999999999999998888654
Q ss_pred cCCC-CChhhH------------------------------HHHHHHHHhcCChHHHHHHH-------------------
Q 003749 395 RHAT-LNAIIY------------------------------GNIIYAQCQTRNMERAEALV------------------- 424 (798)
Q Consensus 395 ~~~~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~~~------------------- 424 (798)
.... +...+| ..++..+.+.++++-++++.
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence 3211 111111 11133444555555444332
Q ss_pred ----------HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCcCHHHHHHHHHHHHHcCC---HHH
Q 003749 425 ----------RDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC-G-FSPSIISYGCLINLYTKIGK---VSK 489 (798)
Q Consensus 425 ----------~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~---~~~ 489 (798)
+.|.+.. +-+......+.....+.|+.++|..+|...... + -..+......|+..|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 1111110 123333444445566788889999998888762 1 22344555677888877766 223
Q ss_pred HHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 490 ALEV----------------------SKVMKSS-GI-KH--NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543 (798)
Q Consensus 490 A~~~----------------------~~~m~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 543 (798)
+..+ +...... +. .. +...|..+..++.. ++.++|+..|.+..... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 3222 1111111 11 23 56677777777776 78888999888877653 45444
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 544 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
...+..++...|++++|...|+++... .++...+..+..++.+.|++++|..++++.++.... +...+..+...+..
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHh
Confidence 444555667899999999999998665 234455667778889999999999999999886532 33344444445556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAV 703 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (798)
.|++++|+..+++.++. .|+...|..+..++.+.|+.++|+..|+++++.... +...++.+..++...|++++|+.+
T Consensus 589 ~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 69999999999999876 467889999999999999999999999999998754 778899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCcccccc
Q 003749 704 TKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV-HTYTSFINACSKAGDMQVRFS 772 (798)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~l~~~~~~~g~~~~a~~ 772 (798)
+++..+.. +.+...+..+..++...|++++|+..+++..+. .|+. .+.........+..+++.+.+
T Consensus 666 l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 666 LERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999876 678889999999999999999999999999874 5653 444455555555555555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-18 Score=190.56 Aligned_cols=369 Identities=10% Similarity=0.045 Sum_probs=290.2
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
......++..+.+.|++++|+.+++...... .-+...+..++.++...|++++|+..|+++.+.. +.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445667788899999999999999999874 3355566777778888999999999999999874 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
+...|++++|+..|+++..... .+...+..++.++...|++++|...++.+..... .+...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999998743 3677888999999999999999999998887642 334444444 347889999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN----VFAVFED 531 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 531 (798)
...++++.+.....+...+..+...+.+.|++++|+..++++.+.. ..+...+..+...|...|++++ |...|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998876433345555666788999999999999999999875 4467788889999999999986 8999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (798)
Q Consensus 532 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 611 (798)
..+..+. +...+..+..++.+.|++++|+..+++....... +...+..+..++.+.|++++|+..|+.+.+.... +.
T Consensus 276 Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~ 352 (656)
T PRK15174 276 ALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TS 352 (656)
T ss_pred HHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-ch
Confidence 9987654 6788999999999999999999999999987644 5566777889999999999999999999876433 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT----TIMHGYASLGDTGKAFEYFTKLR 673 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~----~li~~~~~~g~~~~A~~~~~~~~ 673 (798)
..+..+..++...|+.++|+..|++..+....-....|. .+-.++...+..++....+.++.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 344445678899999999999999988763221222333 33333444444444434444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-18 Score=189.91 Aligned_cols=362 Identities=7% Similarity=-0.004 Sum_probs=289.9
Q ss_pred HHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 307 ARRGDMHRARQTFENMRAR--GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA 384 (798)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 384 (798)
.+..+|+.-.-+|....+. .-.-+..-.-.++..+.+.|++++|+.+++..+... +-+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 4455565555555444332 001122334456778889999999999999999874 3356677777788888999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
|+..|+++....+. +...+..+..++.+.|++++|.+.++++.+.. +.+...+..++..+...|++++|...+.++..
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999987543 67788999999999999999999999999874 45677889999999999999999999999877
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 465 CGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLY 544 (798)
Q Consensus 465 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 544 (798)
.... +...+..+ ..+...|++++|..+++.+.+.....+...+..+...+...|++++|+..|+++.+.... +...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 5433 33344333 358889999999999999887643344555566678889999999999999999987654 67888
Q ss_pred HHHHHHHHcCCChHH----HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 545 NNIIRAFCGMGNMDR----AIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILG 620 (798)
Q Consensus 545 ~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 620 (798)
..+..+|...|++++ |+..|+++...... +...+..+...+.+.|++++|+..++++.+.... +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 899999999999986 89999999987644 6678889999999999999999999999987544 56778888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE 678 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 678 (798)
|.+.|++++|+..|+++.+.+ |+. ..+..+..++...|+.++|...|+++.+....
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999998763 444 33444677889999999999999999887544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-17 Score=190.57 Aligned_cols=421 Identities=10% Similarity=-0.003 Sum_probs=235.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
..-.+......|+.++|+++++.+.... ..+...+..+..++.+.|++++|+.+|++.++.. +.+...+..++.++.+
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444555566666666666655421 2334445555566666666666666666655542 2234455555555666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
.|++++|+..++++...... +.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 66666666666665554222 333 5555555556666666666666655543 22344444455555555555555555
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCH---HHHHHHHH
Q 003749 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGF-----LKLKDW---ANVFAVFE 530 (798)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~---~~a~~~~~ 530 (798)
++++.. .|+... -+ .......++..+ ...+++ ++|+..++
T Consensus 173 l~~~~~---~p~~~~---~l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 173 IDDANL---TPAEKR---DL--------------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHhCCC---CHHHHH---HH--------------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 544432 111000 00 000001111111 111223 55666666
Q ss_pred HHHHc-CCCCCHH-H----HHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 531 DVMRD-GLKPDVV-L----YNNIIRAFCGMGNMDRAIHIVKEMQKERHR-PTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (798)
Q Consensus 531 ~~~~~-g~~~~~~-~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 603 (798)
.+.+. ...|+.. . ....+.++...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 66543 1111111 1 111123344556777777777776665421 111 12224556677777777777777766
Q ss_pred HcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHH
Q 003749 604 RSGCIP---TVHTFNALILGLVEKRQMEKAIEILDEMTLAGI-----------SPN---EHTYTTIMHGYASLGDTGKAF 666 (798)
Q Consensus 604 ~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~---~~t~~~li~~~~~~g~~~~A~ 666 (798)
+..... .......|..++.+.|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 543211 123444555566777777777777777665421 122 224456667778888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003749 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (798)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (798)
++++++...... +...+..+...+...|+.++|+..++++.... +.+...+..++..+.+.|++++|+.+++++++.
T Consensus 380 ~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~- 456 (765)
T PRK10049 380 MRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR- 456 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 888888876544 57788888888888888888888888888765 555677777777888888888888888888874
Q ss_pred CCCCHHHHHHHHHHH
Q 003749 747 VQPDVHTYTSFINAC 761 (798)
Q Consensus 747 ~~pd~~~~~~l~~~~ 761 (798)
.||......|-..+
T Consensus 457 -~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 -EPQDPGVQRLARAR 470 (765)
T ss_pred -CCCCHHHHHHHHHH
Confidence 56655444444444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-17 Score=186.66 Aligned_cols=390 Identities=11% Similarity=0.069 Sum_probs=250.7
Q ss_pred HHHHHHHHhhc---CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003749 282 QAVVSAFERIK---KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (798)
Q Consensus 282 ~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 358 (798)
..++..+.+.. ..+...+..+...+...|++++|+++|+++++.. +.+...+..++.++...|++++|+..+++++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555433 2455568999999999999999999999999873 4456778888899999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--
Q 003749 359 EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI-- 436 (798)
Q Consensus 359 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-- 436 (798)
+.. +.+.. +..+..++...|+.++|+..|+++.+.... +...+..++.++...+..++|++.++.+.. .|+.
T Consensus 111 ~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~ 184 (765)
T PRK10049 111 SGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKR 184 (765)
T ss_pred HhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHH
Confidence 873 34666 999999999999999999999999998544 677777788889999999999999877654 1220
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHC-CCCCCHH-
Q 003749 437 ----DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV---SKALEVSKVMKSS-GIKHNMK- 507 (798)
Q Consensus 437 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-~~~~~~~- 507 (798)
.....++..+.. ......+++ ++|+..++.+.+. ...|+..
T Consensus 185 ~l~~~~~~~~~r~~~~------------------------------~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 185 DLEADAAAELVRLSFM------------------------------PTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHHHHHHhhcc------------------------------cccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 011111111110 001111222 4555555555532 1111111
Q ss_pred HH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC---CcccH
Q 003749 508 TY----SMLINGFLKLKDWANVFAVFEDVMRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP---TSRTF 579 (798)
Q Consensus 508 ~~----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 579 (798)
.+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++....... .....
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 00 01122334456666666666666655422 221 11223556666666666666666655432111 01223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003749 580 MPIIHGFARAGEMKRALEIFDMMRRSGC-----------IPT---VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (798)
Q Consensus 580 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 645 (798)
..+..++.+.|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n 392 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGN 392 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 3444455666666666666666654321 122 2244556667777888888888888877653 445
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
...+..++..+...|+.++|++.++++++.... +...+..++..+...|++++|+.+++++++..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 667777778888888888888888888776533 45566666777788888888888888887754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-16 Score=176.83 Aligned_cols=443 Identities=11% Similarity=0.052 Sum_probs=332.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTL--HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
+....+...++.|+++.|+..|+++.+. .|+. .++ .++..+...|+.++|+..+++..... .........++..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 3444555677999999999999999987 4443 244 88889999999999999999998321 2233344444678
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
|...|++++|+++|+++.+.... +...+..++..|.+.++.++|++.++++.... ++...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999998655 57777788899999999999999999998873 4555555565666667777779
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCC---
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY------SMLINGF-----LKLKD--- 521 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~------~~ll~~~-----~~~~~--- 521 (798)
++.++++.+.... +...+..+..++.+.|-...|+++.++-... +.+...-+ ..++..- ....+
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999997532 6777888899999999999999877654321 11111111 1111100 01122
Q ss_pred HHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 003749 522 WANVFAVFEDVMRD-GLKPDV-V----LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595 (798)
Q Consensus 522 ~~~a~~~~~~~~~~-g~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 595 (798)
.+.|+.-++.+... +..|.. . ...-.+-++...|++.++++.|+.+...+......+...+.++|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 34455555555542 111221 1 22234567889999999999999999888665666888899999999999999
Q ss_pred HHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHH
Q 003749 596 LEIFDMMRRSGC-----IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGI-------------SPNEH-TYTTIMHGY 656 (798)
Q Consensus 596 ~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------------~p~~~-t~~~li~~~ 656 (798)
+.+|..+..... .++......|..+|...+++++|..+++++.+... .||-. .+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999876431 22444467888999999999999999999987311 12222 345567788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003749 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
...|++.+|.+.++++....+. |......+.+.+...|+..+|+..++.+.... +.+..+...++.++...|++++|.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999988754 89999999999999999999999998777664 677788889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHH
Q 003749 737 DLMQQMKQEGVQPDVHT 753 (798)
Q Consensus 737 ~~~~~m~~~g~~pd~~~ 753 (798)
.+++.+.+. .|+...
T Consensus 505 ~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 505 LLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHHhh--CCCchh
Confidence 999998874 455443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-16 Score=173.14 Aligned_cols=437 Identities=11% Similarity=0.051 Sum_probs=326.7
Q ss_pred hhhhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 243 RARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322 (798)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (798)
....+..+.|+. +.|+..|++++..+|. +......++..+...|+.++|+..+++.
T Consensus 39 ~~aii~~r~Gd~---------~~Al~~L~qaL~~~P~---------------~~~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 39 DSLIIRARAGDT---------APVLDYLQEESKAGPL---------------QSGQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred HHHHHHHhCCCH---------HHHHHHHHHHHhhCcc---------------chhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 334447788888 8999999999999986 3212227788888999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 003749 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI 402 (798)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (798)
.... .........+...|...|++++|+++|+++++.... +...+..++..|.+.++.++|++.++++..... +..
T Consensus 95 ~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~ 170 (822)
T PRK14574 95 QSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQ 170 (822)
T ss_pred ccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chH
Confidence 8321 223333344467888999999999999999998533 677888889999999999999999999988743 444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH------HH
Q 003749 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISY------GC 476 (798)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~ 476 (798)
.+..++..+...++..+|++.++++.+.+ +.+...+..++.+..+.|-...|+++..+-.+. +.+...-+ ..
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAE 248 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHH
Confidence 44555555656777777999999999985 557788899999999999999999877654322 11111111 11
Q ss_pred HHHHH---H--HcCC---HHHHHHHHHHHHHC-CCCCCH-HH-HH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 477 LINLY---T--KIGK---VSKALEVSKVMKSS-GIKHNM-KT-YS---MLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (798)
Q Consensus 477 li~~~---~--~~g~---~~~A~~~~~~m~~~-~~~~~~-~~-~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (798)
+++.- . ...+ .+.|+.-++.+... +..|.. .. .. -.+-++...+++.++++.|+.+...+...-..
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 11110 0 1122 34455555555542 111321 22 22 23456778899999999999999988766677
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------
Q 003749 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERH-----RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC---------- 607 (798)
Q Consensus 543 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------- 607 (798)
+-..+..+|...++.++|+.+|+.+..... .++......|.-+|...+++++|..+++.+.+.-.
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 888999999999999999999999976532 12233346788999999999999999999987321
Q ss_pred ---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003749 608 ---IPT-VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT 683 (798)
Q Consensus 608 ---~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 683 (798)
.|| ...+..++..+...|++.+|++.++++.... +-|......+.+.+...|...+|++.++.+...... +..+
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~ 486 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLIL 486 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHH
Confidence 122 2334556677889999999999999998764 678889999999999999999999999888776543 6778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 684 YEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
...++.++...|++++|..+.+.+.+..
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 8889999999999999999999998764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-15 Score=148.82 Aligned_cols=471 Identities=11% Similarity=0.021 Sum_probs=364.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 305 YYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA 384 (798)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 384 (798)
+.....+.+.|+-++.++.+. +..+.. |..+|++...|+.|.+++++..+. ++-+...|.+....--..|+.+.
T Consensus 385 aAVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHH
Confidence 344455667799999999887 333444 445666777899999999999886 67788999998888888999999
Q ss_pred HHHHHHHHH----hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 003749 385 ADHWFEEAK----ERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 385 A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
+.+++++.+ ..|+..+..-|..=...|-..|..--+..+....+..|++.. ..+|+.-.+.|.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 988887654 467788888888888888889999999999999988876533 56888889999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003749 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (798)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (798)
|...++.. .-+...|......--..|..++...+|+++... .+-....|......+-..|++..|..++....+....
T Consensus 539 ya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 539 YAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 99988863 336778888888888889999999999999886 3445566766777777889999999999999887665
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (798)
Q Consensus 539 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 618 (798)
+...|-.-+.....+.++++|..+|.+.... .++...|.--+....-.+..++|++++++.++.- .--...|..+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLG 692 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHh
Confidence 7788888889999999999999999988775 4577888877777777889999999999888752 22356777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (798)
..+-+.++++.|.+.|..-.+. .+-..-.|-.|...-.+.|.+-+|..+|++.+-.+.+ +...|...|.+-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHH
Confidence 7888888888888888776554 2334456777777777888999999999999887766 8889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccccccc--
Q 003749 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPML-- 776 (798)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~-- 776 (798)
.|..++.++++. ++.+...|.--|+...+.++-......+++ ..-|..+...+...+....++++|++....
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888764 356666777777777776665444444443 244666666677777777777777776332
Q ss_pred c--hhhhhhhhhhheeecCCC
Q 003749 777 T--KFYLFSFIWFLITMNSHK 795 (798)
Q Consensus 777 ~--~~~~~~~~w~~~~~~~~~ 795 (798)
+ +.++|..+||..-...||
T Consensus 845 k~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred ccCCccchHHHHHHHHHHHhC
Confidence 2 256777788755555555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-16 Score=153.51 Aligned_cols=458 Identities=16% Similarity=0.148 Sum_probs=320.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY-TNLIHAYAVGRDMEEALSCVRKMKEEGIE----MSLVTYSIIV 373 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~l~ 373 (798)
...|.+-|..+..+.+|+..|+-+++...-|+.-.. -.+.+.+.+.+.+.+|++.|+..++.=.. ......+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344556677778899999999999987655555433 34557788999999999999887765211 1234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------------CChhhHHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID------------APIDIYHM 441 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~------------~~~~~~~~ 441 (798)
..+.+.|++++|+..|+...+. .||..+-..|+.++.--|+-++..+.|.+|+..-.. |+....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 7788999999999999998875 568888888888888999999999999999864322 22222322
Q ss_pred HH-----HHHHhcC--CHHHHHHHHHHHHHCCCCcCHH-------------HHH--------HHHHHHHHcCCHHHHHHH
Q 003749 442 MM-----DGYTIIG--NEEKCLIVFERLKECGFSPSII-------------SYG--------CLINLYTKIGKVSKALEV 493 (798)
Q Consensus 442 l~-----~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~-------------~~~--------~li~~~~~~g~~~~A~~~ 493 (798)
.+ .-..+.+ +.++++-.--++..--+.||.. .+. .-..-|.+.|+++.|+++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 22 1111111 1222222222222111122210 010 112357889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 494 SKVMKSSGIKHNMKTYSMLING--FLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 494 ~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
++-+.+.+-+.-...-+.|-.. +.-.+++.+|.++-+..+...-. +......-......+|++++|.+.|++.+...
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 9988876433333333333322 22346788888877776654221 33333333444556899999999999998763
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTT 651 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ 651 (798)
-.-. ..+-.+.-.+...|++++|++.|-++...- ..+..+..-+...|....+...|++++.+.... ++.|...++-
T Consensus 521 asc~-ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCT-EALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 2211 122223335678899999999998765431 236677777888888899999999999876654 5667889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcC
Q 003749 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA-RRG 730 (798)
Q Consensus 652 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g 730 (798)
|...|-+.|+-.+|++++-+--.. +..+..+...|..-|....-+++|+.+|++..- +.|+..-|..|+..|. +.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999999887655443 345778888888889999899999999999876 4699999998886655 689
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 731 DVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGD 766 (798)
Q Consensus 731 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~ 766 (798)
++++|.++++...++ +.-|......|+..|...|.
T Consensus 675 nyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999999999998875 77788999999999988884
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-14 Score=139.34 Aligned_cols=322 Identities=16% Similarity=0.258 Sum_probs=236.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCChHHH-HHHHHHHHHcC------------
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEA-LSCVRKMKEEG------------ 361 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~A-~~~~~~m~~~g------------ 361 (798)
.+=+.|++. ...|.+.++.-+|++|...|+..+...-..|+.. |.+..+..-| ++.|-.|.+.|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 344555554 4578889999999999999887777776666644 3233222211 12222232221
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003749 362 -------IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA 434 (798)
Q Consensus 362 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 434 (798)
.+-...|+.+||.++|+.-..+.|.++|.+......+.+..+|+.+|.+-.- ....+++.+|+...+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 2335679999999999999999999999999988888899999998877542 23378999999999999
Q ss_pred ChhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCCC--
Q 003749 435 PIDIYHMMMDGYTIIGNEEKC----LIVFERLKECGFSPSIISYGCLINLYTKIGKVSK-ALEVSKVMKS----SGIK-- 503 (798)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~-- 503 (798)
|..|+|+++.+..+.|+++.| ++++.+|++.|+.|...+|..+|..+.+.++..+ +..++..+.. ..++
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 999999999999999988754 5677888999999999999999999988887644 4444444433 2222
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 003749 504 --HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG----LKP---DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (798)
Q Consensus 504 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (798)
.+...|...+..|.+..+.+-|.++...+.... +.+ ...-|..+..+.|+....+.-..+|+.|.-.-.-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 245567778888889999998988876654321 111 12345667788889999999999999998887778
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 575 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
+..+...++.+..-.++++-.-+++.+++..|...+...-..++..+++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 8888899999999999999999999999887655444444444434443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-14 Score=149.08 Aligned_cols=483 Identities=11% Similarity=0.118 Sum_probs=340.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|.+++.+++..+|. +...|..|..+|-+.|+.++++..+-.+-..+ +.|...|..+.....+
T Consensus 156 eeA~~i~~EvIkqdp~---------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPR---------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCcc---------------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 9999999999999986 77889999999999999999999888887775 5577899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHhcCChHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYG----NIIYAQCQTRNMER 419 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~ 419 (798)
.|+++.|.-+|.+.++.. +.+...+---+..|-+.|+...|.+.|.++.....+.|..-+. .++..+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999975 4466666777889999999999999999999876543433333 34556777788899
Q ss_pred HHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCcCH
Q 003749 420 AEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG---------------------------FSPSI 471 (798)
Q Consensus 420 A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------~~~~~ 471 (798)
|.+.++.....+ -..+...++.++..|.+...++.+......+.... ...+.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999998877732 23456678899999999999999999888887621 12222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 472 ISYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (798)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 549 (798)
.++ .+.-++......+....+.....+.+ ...+...|.-+.++|...|++.+|+.+|..+......-+...|-.+..
T Consensus 379 ~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 221 12233344444444444455555554 334556788888999999999999999999998766667889999999
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHH
Q 003749 550 AFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS--------GCIPTVHTFNALILGL 621 (798)
Q Consensus 550 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~p~~~~~~~li~~~ 621 (798)
+|...|.+++|.+.|+.++..... +......|...+.+.|+.++|.+.+..+..- +..++..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 999999999999999999887543 5566667788899999999999999886522 2334444445556677
Q ss_pred HhcCCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHH------HH
Q 003749 622 VEKRQMEKAIEILDEMTLAG----------------------ISPNEHTYTTIMHGYASLGDTGKAFEYFTK------LR 673 (798)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~----------------------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~------~~ 673 (798)
.+.|+.++=+.+...|+... ..-...+...++.+-.+.++.....+-+.. ..
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 78888777555444433210 111222333444444444442222221111 11
Q ss_pred HcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 003749 674 NEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKI-PRNTF----VYNILIDGWARRGDVWEAADLMQQMKQE- 745 (798)
Q Consensus 674 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 745 (798)
..++..+ ...+..++.++++.+++++|+.+...+.+..+ ..+.. .-..++.+....+++..|...++.|...
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1222222 24567788899999999999999998876532 11222 2355667777899999999999999864
Q ss_pred CC--CCCH-HHHHHHHHHHHHcC
Q 003749 746 GV--QPDV-HTYTSFINACSKAG 765 (798)
Q Consensus 746 g~--~pd~-~~~~~l~~~~~~~g 765 (798)
++ .+.. ..|+...+...+.|
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~ 719 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYG 719 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 22 2222 24554555555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-14 Score=148.53 Aligned_cols=466 Identities=15% Similarity=0.132 Sum_probs=334.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
.+.....|++++|.+++.+.++.. +.+...|.+|...|-..|+.++++..+-..-..+ +-|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 344555699999999999999985 5577899999999999999999999886555543 44778999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHH
Q 003749 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI----DIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
+.|.-+|.++++.+.. +...+..-+..|-+.|+..+|.+.|.++.......+. .....+++.|...++.+.|++.
T Consensus 224 ~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999998544 6666666778899999999999999999997532232 2334456777888888999999
Q ss_pred HHHHHHCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------------------------CCCHHHHH
Q 003749 459 FERLKECG-FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI---------------------------KHNMKTYS 510 (798)
Q Consensus 459 ~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~~~~~~~~ 510 (798)
++.....+ -.-+...++.++..|.+...++.|......+..... ..+..++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 98887632 233556788999999999999999998888776211 1222221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 003749 511 MLINGFLKLKDWANVFAVFEDVMRDG--LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588 (798)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 588 (798)
-++-++.+.+..+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 12334445555555555555555555 4445678889999999999999999999999988766678899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcC
Q 003749 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA--------GISPNEHTYTTIMHGYASLG 660 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------~~~p~~~t~~~li~~~~~~g 660 (798)
.|.++.|.+.|..++..... +...--.|...+.+.|+.++|.+.+..+..- ...++........+.+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999986543 5666677778899999999999999986522 23455556666777888899
Q ss_pred ChHHHHHHHHHHHHcCC----------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH------HhCCC
Q 003749 661 DTGKAFEYFTKLRNEGL----------------------ELDVFTYEALLKACCKSGRMQSALAVTKEM------SAQKI 712 (798)
Q Consensus 661 ~~~~A~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~ 712 (798)
+.++-+.+-..|+.... .-...+...++.+-.+.++......-...- ...++
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 98886666665554211 111122222333333333322211111110 11122
Q ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHH----HHHHHHHHHHHcCCccccccc
Q 003749 713 PRNT--FVYNILIDGWARRGDVWEAADLMQQMKQEGVQ-PDVH----TYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 713 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~----~~~~l~~~~~~~g~~~~a~~~ 773 (798)
..+. ..+.-++..+++.|++++|+.+...+.+.... -|.. .-...+.++...++...|++.
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2222 24566788899999999999999998875322 2333 223456777888999988876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-13 Score=131.83 Aligned_cols=475 Identities=12% Similarity=0.082 Sum_probs=342.8
Q ss_pred hhHHHHhhhhc-cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHH
Q 003749 237 KNKAEVRARWV-AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRA 315 (798)
Q Consensus 237 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (798)
.+++..-..|| |++-... +++...|+.+|.++++.+-. +...|-..+.+=.++.+...|
T Consensus 67 rrnR~~~~~WikYaqwEes-----q~e~~RARSv~ERALdvd~r---------------~itLWlkYae~Emknk~vNhA 126 (677)
T KOG1915|consen 67 RRNRLNMQVWIKYAQWEES-----QKEIQRARSVFERALDVDYR---------------NITLWLKYAEFEMKNKQVNHA 126 (677)
T ss_pred HHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHhcccc---------------cchHHHHHHHHHHhhhhHhHH
Confidence 35566777888 7665433 45568899999999988754 444555566666678888999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 316 RQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+.++++++..- +--...|...+.+=-..|++..|.++|++-.+ ..|+.-.|++.|..-.+...++.|..+|++....
T Consensus 127 RNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~ 203 (677)
T KOG1915|consen 127 RNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV 203 (677)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee
Confidence 99999998862 22223556666666677999999999998877 5789999999999999999999999999998765
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--H
Q 003749 396 HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE-GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--I 471 (798)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 471 (798)
.|++..|......-.++|++.-+..+|...++. |- ..+...+.+.+..-..+..++.|.-+|.-.++. +..+ .
T Consensus 204 --HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~rae 280 (677)
T KOG1915|consen 204 --HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAE 280 (677)
T ss_pred --cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHH
Confidence 478888988888888999999999999887763 11 112334555555556778888888888887765 2222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH
Q 003749 472 ISYGCLINLYTKIGKVSKALEV--------SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD-VV 542 (798)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~ 542 (798)
..|..+...=-+.|+.....++ ++.+.+.+ ..|-.+|-..++.-...|+.+...++|+..+..-+... -.
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH
Confidence 4555555555555664433332 34444443 45778888888888888999999999999887533221 12
Q ss_pred HHHHHHHH--------HHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCC
Q 003749 543 LYNNIIRA--------FCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHG----FARAGEMKRALEIFDMMRRSGCIPT 610 (798)
Q Consensus 543 ~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~p~ 610 (798)
.|...|.. -....+.+.+.++|+..++. ++-...|+..+--. ..+..++..|.+++..++. .-|.
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK 436 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCc
Confidence 23222221 13567888999999988874 22244555544433 4577899999999988765 4567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG-LELDVFTYEALLK 689 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~ 689 (798)
..+|...|..-.+.++++...+++++.++-+ +-+..+|......-..+|+.+.|..+|..+++.. ++.....|-+.|+
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 8899999999999999999999999999875 4566788888888888999999999999998763 3344566777777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHH
Q 003749 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA-----RRG-----------DVWEAADLMQQMKQ 744 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 744 (798)
--...|.++.|..+++.+++.. ....+|-++..-=. ..| ....|..+|++...
T Consensus 516 FEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 516 FEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 7788999999999999998753 44446655544322 233 56677788877653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-13 Score=136.01 Aligned_cols=489 Identities=11% Similarity=0.069 Sum_probs=390.9
Q ss_pred hHHHHHHHHHHhcCCcc---HHHHHHHH---------HhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 003749 264 EWHRREFRKAVETQPEN---WQAVVSAF---------ERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL 331 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 331 (798)
..=.++++++++..|.+ |..++..= .+-.. -..+-..|.-+|++..-|+.|..+++.+.+. ++.+.
T Consensus 363 ~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAve-ccp~s~dLwlAlarLetYenAkkvLNkaRe~-iptd~ 440 (913)
T KOG0495|consen 363 KNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVE-CCPQSMDLWLALARLETYENAKKVLNKAREI-IPTDR 440 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCh
Confidence 45577899999998876 66555421 11000 0001234556778888899999999999986 67889
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChhhHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKM----KEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL--NAIIYG 405 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~ 405 (798)
.+|.+....=-.+|+.+...+++++- ...|+..+-..|..=...+-+.|..-.+..+....+..|+.- -..+|.
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 99999888888899999988887764 456888899999999999999999999999999988877653 245888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG 485 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 485 (798)
.-...|.+.+.++-|..+|...++. .+.+..+|...+..--..|..+....+|++.... +.-....|......+...|
T Consensus 521 ~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcC
Confidence 8889999999999999999999886 3567788998888888899999999999999886 3335667777788899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 003749 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (798)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 565 (798)
+.-.|..++..+.+... -+...|..-+........++.|..+|.+.... .++..+|..-+....-.++.++|+++++
T Consensus 599 dv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 99999999999998753 36778888899999999999999999998764 4566777776777777899999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003749 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (798)
Q Consensus 566 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 645 (798)
+.++.-.. -...|..+.+.+-+.++++.|.+.|..-.+. +.-.+-.|-.|...-.+.|++-+|..+|++..-++ +.+
T Consensus 676 e~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 676 EALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 98876322 3456777888899999999999988876654 33467788888877788899999999999988776 567
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (798)
...|-..|..-.+.|+.+.|..++.++++... -+...|..-|.+..+.++-..+...+++. ..|..+.-.+...
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~l 826 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECP-SSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKL 826 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHH
Confidence 88999999999999999999999999988654 37778888888888877755555555443 3677888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccc
Q 003749 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQV 769 (798)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~ 769 (798)
|.....+++|.+.|++....+- .+..+|.-+..-+..+|.-+.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHH
Confidence 9999999999999999987532 235688888888888884433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-15 Score=138.97 Aligned_cols=322 Identities=14% Similarity=0.185 Sum_probs=230.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcC
Q 003749 447 TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM------KTYSMLINGFLKLK 520 (798)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~ 520 (798)
.-.++.++|..+|-+|.+... .+..+.-+|.+.|.+.|..|.|+++.+.+.+. ||. .....|..-|...|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 445778899999999988522 24455667888899999999999999888874 332 23344566778888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHH
Q 003749 521 DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~ 596 (798)
-+|.|..+|..+...+.- -......|+..|-...+|++|+++-+++.+.+..... ..|..|...+.-..+++.|.
T Consensus 122 l~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999888875432 4556778888899999999999988888876543221 22344444555567888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.++.+..+.+.+ .+..--.+...+...|+++.|++.++...+.+..--..+...|..+|...|+.++...++..+.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888888876443 4444455666788889999999999988887655555677888889999999999999998888765
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR---RGDVWEAADLMQQMKQEGVQPDVHT 753 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~~ 753 (798)
..++ .-..|...-....-.+.|..++.+-+..+ |+...+..|++.... .|+..+.+.+++.|...-++
T Consensus 280 ~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~----- 350 (389)
T COG2956 280 TGAD--AELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR----- 350 (389)
T ss_pred CCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh-----
Confidence 4433 33334443344445677777776666654 888888888887653 45677777788888754222
Q ss_pred HHHHHHHHHHcCCccccccccccchhhhhhhhhhheeecCCCCC
Q 003749 754 YTSFINACSKAGDMQVRFSIPMLTKFYLFSFIWFLITMNSHKND 797 (798)
Q Consensus 754 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~w~~~~~~~~~~~ 797 (798)
+..-.-|.+.| |...+++|.|++|+.|+-+
T Consensus 351 -~~~~YRC~~CG-------------F~a~~l~W~CPsC~~W~Ti 380 (389)
T COG2956 351 -RKPRYRCQNCG-------------FTAHTLYWHCPSCRAWETI 380 (389)
T ss_pred -hcCCceecccC-------------CcceeeeeeCCCccccccc
Confidence 22334577777 7889999999999999864
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-13 Score=132.52 Aligned_cols=411 Identities=13% Similarity=0.166 Sum_probs=254.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HH-HHHHHHHHHHhcC----------
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN--AE-AADHWFEEAKERH---------- 396 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~--~~-~A~~~~~~~~~~~---------- 396 (798)
.+.+-|.|+.+. ..|.+.++.-+|+.|...|++.+...-..|+...+-.+. .- .-.+.|-.|...|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 444667777665 468899999999999999988888877777765443222 11 1112222222221
Q ss_pred ---------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 397 ---------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 397 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.+-+..++..||.+.|+--..+.|.+++++..+.....+..++|.+|.+-.-.- ..++..+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 123556777788888888888888888887777666777777887775543222 2567777777777
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHc----CCC
Q 003749 468 SPSIISYGCLINLYTKIGKVSKA----LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWA-NVFAVFEDVMRD----GLK 538 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~----g~~ 538 (798)
.||..|+|.++++..+.|+++.| ++++.+|++.|+.|...+|..+|..+++.++-. .+..++.++... .++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 88888888888888888876644 456777777888888888888877777766543 344444444332 111
Q ss_pred ----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC----CCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 539 ----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER----HRP---TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC 607 (798)
Q Consensus 539 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 607 (798)
-|...|...+..|.+..+.+-|.++..-+.... +.+ ....|..+..+.++....+.....|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 144556666777777777777776665554321 111 123345556666677777777777777765555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--------H-----HHHHHH----
Q 003749 608 IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG-DT--------G-----KAFEYF---- 669 (798)
Q Consensus 608 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~--------~-----~A~~~~---- 669 (798)
.|+..+...++.+..-.++++-.-+++.+++..|...+...-..++..+++.. +. . -|..++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777777777664444444444444444433 11 0 011111
Q ss_pred ---HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 670 ---TKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--I--PRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 670 ---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
.++. ..+......+...-.+.+.|+.++|++++..+...+ + .|......-+++.-.+..+...|+.+++-|
T Consensus 510 ~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1122 223344556666666777888888888777775432 1 122223335555566677777777777777
Q ss_pred HHcCC
Q 003749 743 KQEGV 747 (798)
Q Consensus 743 ~~~g~ 747 (798)
...++
T Consensus 588 ~~~n~ 592 (625)
T KOG4422|consen 588 SAFNL 592 (625)
T ss_pred HHcCc
Confidence 65543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-12 Score=123.97 Aligned_cols=450 Identities=14% Similarity=0.126 Sum_probs=343.6
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|....+.=..++++..|+.+|++++... ..+...|...+.+=.++..+..|..++++.+.. ++.-...|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 33445555566667889999999999999875 457778888889999999999999999999875 2323345666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
+--..|++..|.++|++..+- .|+..+|.+.|..-.+.+.++.|..++++..-. .|++..|...+..-.+.|+...
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 777789999999999998864 789999999999999999999999999999874 6899999999999999999999
Q ss_pred HHHHHHHHHHC-CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH---
Q 003749 455 CLIVFERLKEC-GF-SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFA--- 527 (798)
Q Consensus 455 A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~--- 527 (798)
|..+|++..+. |- ..+...+.++...=.++..++.|.-+|+-.++. ++.+ ...|......--+-|+......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998764 11 112345555555556677889999999988875 2333 4455555554445566544433
Q ss_pred -----HHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc-ccHHHHHHH--------HHhcCCHH
Q 003749 528 -----VFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS-RTFMPIIHG--------FARAGEMK 593 (798)
Q Consensus 528 -----~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~--------~~~~~~~~ 593 (798)
-|+.+++.+.. |-.+|-..++.-...|+.+...++|++.+..-..... ..|.-.|-. -....+.+
T Consensus 305 ~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 24555555444 7888999999999999999999999999876432111 222222211 13468899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003749 594 RALEIFDMMRRSGCIPTVHTFNALIL----GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYF 669 (798)
Q Consensus 594 ~a~~~~~~~~~~~~~p~~~~~~~li~----~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 669 (798)
.+.++|+..++. +.-...||.-+=. -..+..++..|.+++...+ |..|-..+|...|..-.+.++++...+++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999998884 2224455544433 3346788999999998876 55888999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003749 670 TKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK-IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQ 748 (798)
Q Consensus 670 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 748 (798)
++.++.++. +..+|......-...|+.+.|..+|+-++.+. +.-....|-..|+-=...|.++.|..+++++++. .
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t 537 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--T 537 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--c
Confidence 999998866 88899998888889999999999999998753 2223456777777778899999999999999985 3
Q ss_pred CCHHHHHHHH
Q 003749 749 PDVHTYTSFI 758 (798)
Q Consensus 749 pd~~~~~~l~ 758 (798)
....+|.++.
T Consensus 538 ~h~kvWisFA 547 (677)
T KOG1915|consen 538 QHVKVWISFA 547 (677)
T ss_pred ccchHHHhHH
Confidence 3444666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-14 Score=137.47 Aligned_cols=419 Identities=12% Similarity=0.036 Sum_probs=251.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPT-LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGF 376 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~ 376 (798)
+-...+-|.++|++++|++.|.+.+.. .|| ...|.....+|...|+|++..+..-+.++.+ |+ +..+.--.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 445678899999999999999999997 677 7788999999999999999999998888853 44 55677777888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID---APIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~ 453 (798)
-..|++++|+.=..-..-.+-.-|..+.-.+=+.+- ..|....++-.+.+-. |+.....+....+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~---- 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD---- 264 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc----
Confidence 888888888643322211111111111111111111 1222222222221112 2222222222222100
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHH----HHHc-CCHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHH
Q 003749 454 KCLIVFERLKECGFSPSIISYGCLINL----YTKI-GKVSKALEVSKVMKSS---GIKHN---------MKTYSMLINGF 516 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~li~~----~~~~-g~~~~A~~~~~~m~~~---~~~~~---------~~~~~~ll~~~ 516 (798)
.......+.......+... +... ..+..|.+.+.+-... ....+ ..+...-...+
T Consensus 265 --------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 265 --------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred --------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 0000000000011111111 1110 1223333332222110 00111 11222222234
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
.-.|+...+..-|+..++....+ ...|-.+..+|....+.++..+.|.+..+.+.. +..+|-.-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 44677888888888887765542 233667777888888888888888888877654 5566666666667777888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.-|++.+..... ++..|--+..+..+.+++++++..|++.+++ ++-....|+.....+...+++++|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 888888876544 5666666666777788888888888888765 34445678888888888888888888888887653
Q ss_pred CC-----CCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 677 LE-----LDVF--TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 677 ~~-----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.. .+.. +.-.++.. --.+++..|..+++++.+.+ +.....|..|...-...|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 1211 11222211 12377888888888888766 45556788888888888888888888888654
|
|
| >PLN03134 glycine-rich RNA-binding protein 4; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-17 Score=142.87 Aligned_cols=84 Identities=26% Similarity=0.483 Sum_probs=79.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+||++++++++|+++|++||.|.+++++.| +.||+++|||||+|++.++|++|++.| |+..|+|+.|+|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kGfaFV~F~~~e~A~~Al~~l--ng~~i~Gr~l~V~ 109 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD-RETGRSRGFGFVNFNDEGAATAAISEM--DGKELNGRHIRVN 109 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3458999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9977643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-12 Score=127.98 Aligned_cols=363 Identities=13% Similarity=0.041 Sum_probs=186.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh--hHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI--IYG 405 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~ 405 (798)
.-|...+-.....+.+.|....|++.|.+.+.. .+..-..|..|..... +.+.+.. ... +...|.. .-.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e~~~~----l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIEILSI----LVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHHHHHH----HHh-cCcccchHHHHH
Confidence 344444444445555556666666666555543 2333334444333322 1111111 110 1111111 111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF--SPSIISYGCLINLYTK 483 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~ 483 (798)
-+..++-...+.+++.+-...+...|+..+...-+..+.++....+++.|+.+|+++++.+. --|..+|..++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 23344555556666666666666666555555555555555666666666666666665422 113444444432 22
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 003749 484 IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHI 563 (798)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 563 (798)
..+-.-+.-...-..-. +-...|..++.+.|+-.++.++|...|+..++.+.. ....|+.+..-|....+...|+..
T Consensus 310 ~~~skLs~LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHHHHHHHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 22211111111111111 123345555666666666666666666666665443 455666666666666666666666
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003749 564 VKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGIS 643 (798)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 643 (798)
|+..++.+.. |-..|-.|.++|.-.+...-|+-.|+++...... |...|.+|..+|.+.++.++|++.|......+ .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 6666665443 6666666666666666666666666666654332 56666666666666666666666666666554 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 644 PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GLELD--VFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 644 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
-+...|..|.+.|.+.++.++|..+|++-++. |...+ ......|..-+.+++++++|..+....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34456666666666666666666666655442 22212 111122334445555555555554433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-13 Score=129.50 Aligned_cols=436 Identities=13% Similarity=0.099 Sum_probs=279.5
Q ss_pred hhhhHHHHHHHHHHhcCCcc-HHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 261 KEREWHRREFRKAVETQPEN-WQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIH 339 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 339 (798)
+++..|++.|+-+++--|.- -..-+ ...+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-
T Consensus 251 r~fskaikfyrmaldqvpsink~~ri-----------kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i 317 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRI-----------KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLII 317 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHH-----------HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhh
Confidence 34478888888877655531 11111 12344556688999999999999999887 688888777777
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCH------------HHHHHHHHH-----HHhcC--CHHHHHHHHHHHHhcCCCCC
Q 003749 340 AYAVGRDMEEALSCVRKMKEEGIEMSL------------VTYSIIVGG-----FAKMG--NAEAADHWFEEAKERHATLN 400 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~------------~~~~~l~~~-----~~~~g--~~~~A~~~~~~~~~~~~~~~ 400 (798)
++.-.|+-++..+.|.+|+..-..+|. ...+..+.. .-+.+ +-++++-.--+++.--+.++
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 888889999999999999864322222 222221111 11110 01111111111111101111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 003749 401 AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480 (798)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 480 (798)
... -.+..++.++.-.... .-...-..-..-|.++|+++.|++++.-+.+.+-+.-...-+.|-..
T Consensus 398 fa~------------g~dwcle~lk~s~~~~--la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l 463 (840)
T KOG2003|consen 398 FAA------------GCDWCLESLKASQHAE--LAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCAL 463 (840)
T ss_pred hhc------------ccHHHHHHHHHhhhhh--hhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHH
Confidence 100 0111222222111110 00111112344578899999999999888765433223333333322
Q ss_pred H-HH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChH
Q 003749 481 Y-TK-IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMD 558 (798)
Q Consensus 481 ~-~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 558 (798)
+ .+ ..++.+|.++-+.....+ +.+......-.+.-..+|++++|.+.|++.+...-.- ......+.-.+...|+++
T Consensus 464 ~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ld 541 (840)
T KOG2003|consen 464 RFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLD 541 (840)
T ss_pred HHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHH
Confidence 2 22 346777877777766543 3344444333444456799999999999988763221 112223344567889999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 559 RAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMT 638 (798)
Q Consensus 559 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 638 (798)
+|+..|-++...- ..+...+..+...|--..+...|++++.+.... +..|..+.+-|...|-+.|+-..|.+.+-+--
T Consensus 542 eald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 542 EALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 9999988775432 226677777888888889999999999887765 44478899999999999999998888765543
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhCCCCCCHH
Q 003749 639 LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC-KSGRMQSALAVTKEMSAQKIPRNTF 717 (798)
Q Consensus 639 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (798)
+. ++-+..+...|...|....-+++++.+|++..- +.|+..-|..++..|. +.|++++|.++++..... ++-|..
T Consensus 620 ry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedld 695 (840)
T KOG2003|consen 620 RY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLD 695 (840)
T ss_pred cc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchH
Confidence 32 456788888899899998899999999998764 4689999988877665 678999999999988754 678888
Q ss_pred HHHHHHHHHHHcCC
Q 003749 718 VYNILIDGWARRGD 731 (798)
Q Consensus 718 ~~~~l~~~~~~~g~ 731 (798)
+..-|+..+...|.
T Consensus 696 clkflvri~~dlgl 709 (840)
T KOG2003|consen 696 CLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhccccc
Confidence 88888888877663
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-12 Score=131.37 Aligned_cols=454 Identities=11% Similarity=0.078 Sum_probs=298.1
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH----HHHHc-------C--
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVR----KMKEE-------G-- 361 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~----~m~~~-------g-- 361 (798)
++.....+++++.-.|+++.|..+...-.-. ..|.........++.+..++++|+.++. .+... +
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 5556667889999999999988887765433 3478888888899999999999999987 22110 0
Q ss_pred CCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 362 IEMSL-----------VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 362 ~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+..|. ..+..-...|....++++|...|.+.+.. |...+..+...-. .. .-.+.+.++.+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs-~~-mlt~~Ee~~ll~~l 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVS-AH-MLTAQEEFELLESL 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHH-HH-hcchhHHHHHHhcc
Confidence 01111 11111122345556677777777777665 3333333321111 11 11111112222211
Q ss_pred CC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003749 431 GI----DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506 (798)
Q Consensus 431 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (798)
.. ..++.....+.........-++....-.+..-.+..-+........+.+...+++.+.+.+++.+.+.. +.+.
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~ 278 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHL 278 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCc
Confidence 10 011111111111110000001111111101111233355556666777888899999999999888764 4556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003749 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGF 586 (798)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 586 (798)
..+..-|.++...|+..+...+=.++++.-+. ...+|-++.--|...|+..+|.+.|.+....+.. -...|..+...|
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsf 356 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSF 356 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHh
Confidence 66666677888888888888888888876444 6778888888888889999999999988766533 356788889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIP-TVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 665 (798)
.-.+.-|+|+..+..+.+.-..- -...| +.--|.+.++++.|.++|.+..... +-|...++.+.-.....+.+.+|
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHH
Confidence 99999999999888776641110 12223 2334677889999999998887653 45667777777777778889999
Q ss_pred HHHHHHHHHc----CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 666 FEYFTKLRNE----GLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 666 ~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (798)
..+|+..+.. +.+ -...+++.|+.+|.+++.+++|+..+++.+... +.+..++.+++-.|...|+++.|++.|
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 9999887632 111 134568899999999999999999999998876 788899999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 740 QQMKQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 740 ~~m~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
.+.+. +.||..+...++..+....
T Consensus 513 hKaL~--l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 513 HKALA--LKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHHh--cCCccHHHHHHHHHHHHhh
Confidence 99875 7888887777777665553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.4e-12 Score=122.50 Aligned_cols=162 Identities=10% Similarity=0.033 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (798)
Q Consensus 543 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 622 (798)
|+..+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|++.++.+++.+.. |-..|-.|..+|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHH
Confidence 3444444444445555555555555544332 3344444445555555555555555555444322 4445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003749 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA 702 (798)
Q Consensus 623 ~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (798)
-.+...-|+-.|++..... +.|...|.+|..+|.+.++.++|++.|+.+...|- .+...+..|.+.|-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555544432 33444555555555555555555555555544432 134445555555555555555554
Q ss_pred HHHHHH
Q 003749 703 VTKEMS 708 (798)
Q Consensus 703 ~~~~~~ 708 (798)
.+++.+
T Consensus 488 ~yek~v 493 (559)
T KOG1155|consen 488 YYEKYV 493 (559)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-13 Score=130.95 Aligned_cols=410 Identities=12% Similarity=0.049 Sum_probs=269.2
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
|.+.|+. ++|++.|+.++++.|. .+.-|+....+|...|+|+++++.--..++.
T Consensus 125 ~f~~kkY---------~eAIkyY~~AI~l~p~---------------epiFYsNraAcY~~lgd~~~Vied~TkALEl-- 178 (606)
T KOG0547|consen 125 FFRNKKY---------DEAIKYYTQAIELCPD---------------EPIFYSNRAACYESLGDWEKVIEDCTKALEL-- 178 (606)
T ss_pred hhhcccH---------HHHHHHHHHHHhcCCC---------------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--
Confidence 5566666 9999999999999885 3667888999999999999999999999887
Q ss_pred CCC-HHHHHHHHHHHHccCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cC--CCCChh
Q 003749 328 EPT-LHVYTNLIHAYAVGRDMEEALSCVRKMK-EEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE-RH--ATLNAI 402 (798)
Q Consensus 328 ~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~ 402 (798)
.|+ +-.++.-.+++-..|++++|+.-.--.- -.|+. |..+--.+=+.+-+ .|....++-.+ ++ +.|...
T Consensus 179 ~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~ 252 (606)
T KOG0547|consen 179 NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSAT 252 (606)
T ss_pred CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHH
Confidence 344 3367777788888899988876433222 12222 22222122122222 12222222222 22 123333
Q ss_pred hHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCCcC--
Q 003749 403 IYGNIIYAQCQT------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEEKCLIVFERLKEC---GFSPS-- 470 (798)
Q Consensus 403 ~~~~l~~~~~~~------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~---~~~~~-- 470 (798)
...+....+... ...+++-..+.+..+ ..+.. ...+..|...+.+-... ...-+
T Consensus 253 fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~ 318 (606)
T KOG0547|consen 253 FIASYFGSFHADPKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEI 318 (606)
T ss_pred HHHHHHhhccccccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhcccccc
Confidence 333333332110 011111111111110 00000 00111222221111100 00001
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 471 -------IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVL 543 (798)
Q Consensus 471 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 543 (798)
..+.......+.-.|+.-.|..-|+..++....++ ..|.-+..+|....+-++.+..|.+..+.+.. |..+
T Consensus 319 d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dv 396 (606)
T KOG0547|consen 319 DAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDV 396 (606)
T ss_pred chhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCch
Confidence 22223333445667899999999999998753332 33777778899999999999999999988766 7788
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 544 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
|..-..++.-.+++++|..-|++.++.... +...|..+..+..|.+++++++..|++.++.-. .....|+.....+..
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTD 474 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhh
Confidence 888889999999999999999999988654 667777888888899999999999999988643 368899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCC-----CCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 624 KRQMEKAIEILDEMTLAGIS-----PNEHTY--TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR 696 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~-----p~~~t~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 696 (798)
.++++.|.+.|+..++.... .+...+ -.++ .+.-.+++..|.+++.++++.+.+ ....|.+|...-...|+
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGK 552 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhh
Confidence 99999999999998765211 122222 1122 112348999999999999998766 67789999999999999
Q ss_pred hHHHHHHHHHHHh
Q 003749 697 MQSALAVTKEMSA 709 (798)
Q Consensus 697 ~~~A~~~~~~~~~ 709 (798)
+++|+++|++...
T Consensus 553 i~eAielFEksa~ 565 (606)
T KOG0547|consen 553 IDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
|
| >KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-16 Score=139.13 Aligned_cols=78 Identities=31% Similarity=0.479 Sum_probs=73.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++||||+|+++++.+.|++.|++||+|.+..|+.| +.||+|||||||+|.|.++|.+|++.. .-.|+||+-++++|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd-~~t~rskGyGfVTf~d~~aa~rAc~dp---~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITD-KNTGRSKGYGFVTFRDAEAATRACKDP---NPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEec-cCCccccceeeEEeecHHHHHHHhcCC---CCcccccccccchh
Confidence 49999999999999999999999999999999999 999999999999999999999999864 66799999999988
Q ss_pred cc
Q 003749 232 DG 233 (798)
Q Consensus 232 ~~ 233 (798)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 43
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-13 Score=140.92 Aligned_cols=267 Identities=12% Similarity=0.068 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARG--IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...-+..+|...+++++|.++|+.+.+.. ..-+.++|.+.+-.+-+. -+---+-+.+++.. +-...+|..+..+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~Laq~Li~~~-~~sPesWca~GNc 430 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSYLAQDLIDTD-PNSPESWCALGNC 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHHHHHHHHhhC-CCCcHHHHHhcch
Confidence 34456677777888888888888777752 112555677766555321 11122233344432 3356778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
|.-+++.+.|++.|++.+..+.. ..++|+.+..-+.....+|.|...|+..+... +.+-.+|..|.-.|.+.++++.|
T Consensus 431 fSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHH
Confidence 88888888888888887776433 56777777777777777777777777776653 33445666667777777777777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
+-.|++..+.+.. +.+....+..++.+.|+.|+|+++++++...+.. |.-.--..+..+...+++++|+..++++.+.
T Consensus 509 e~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 509 EFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 7777777765433 5555556666777777777777777777665432 3322223344555567777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 003749 536 GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR 573 (798)
Q Consensus 536 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 573 (798)
-+. +...+..+...|.+.|+.+.|+.-|..+.....+
T Consensus 587 vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 587 VPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred Ccc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 333 4556666667777777777777766666655433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-13 Score=138.62 Aligned_cols=284 Identities=11% Similarity=0.069 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHH
Q 003749 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA--TLNAIIYGNIIYAQCQTRNMERAEALV 424 (798)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (798)
..+|+.+|+++.++ +.-...+...++.+|...+++++|.++|+.+.+... .-+..+|.+.+.-+ .+.-+---+-
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHHHH
Confidence 34555555554443 222334445555566666666666666666554421 11334444433221 1111111222
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003749 425 RDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH 504 (798)
Q Consensus 425 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 504 (798)
+++++.. +....+|-.+.++|.-+++++.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+... ..
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-ch
Confidence 3333322 223455555555555555555555555555553211 34555555555555555555555555554321 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003749 505 NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (798)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 584 (798)
+...|--|...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+.+|++....+.+ |...--..+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHH
Confidence 2223333444555555555555555555544333 4444444445555555555555555555444332 2222222333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 585 GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA 640 (798)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 640 (798)
.+...+++++|+..++++.+.-.. +...|..+...|.+.|+.+.|+.-|.-|.+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 444445555555555555443211 3334444444555555555555555444443
|
|
| >KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-15 Score=131.48 Aligned_cols=82 Identities=26% Similarity=0.479 Sum_probs=79.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|=|.||+.+++|++|+++|.+||.|..+.+.+| +.||.+||||||.|.+.++|.+||+.| ||+.++.-.|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylard-K~TG~~kGFAFVtF~sRddA~rAI~~L--nG~gyd~LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARD-KETGLSKGFAFVTFESRDDAARAIADL--NGYGYDNLILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEc-cccCcccceEEEEEecHHHHHHHHHHc--cCcccceEEEEEE
Confidence 5678999999999999999999999999999999999 999999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99886
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-12 Score=134.77 Aligned_cols=296 Identities=13% Similarity=0.090 Sum_probs=161.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 491 (798)
...|+++.|++.+.+..+.. +.....+.....++...|+.+.|..++.+..+................+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34555666665555554432 11122223334445555555555555555544321111112222344455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 492 EVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 492 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
..++.+.+.. +-+...+..+...|...|++++|.+++..+.+.+.. +...+..+-.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~---------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH----------------------
Confidence 5555555443 223344444555555555555555555555444322 1111110000
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC---IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHT 648 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t 648 (798)
.........+..+++.+.+..+.+... ..+...+..+...+...|+.++|.+++++..+.. |+...
T Consensus 230 ---------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 230 ---------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred ---------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 000011111222222333333333211 1267777778888888888888888888887763 33331
Q ss_pred ---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003749 649 ---YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV--FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILI 723 (798)
Q Consensus 649 ---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (798)
...........++.+.+.+.+++..+.... |. ....++.+.|.+.|++++|.++|+........|+...+..+.
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 111112223456778888888888776433 44 677788999999999999999999544433458888888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (798)
..+.+.|+.++|.+++++...
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999887643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=135.13 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=75.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|+|+|+|+...|.||+.+|.+||.|.+|.|+.+.| -|||||||+|++.++|.+|.++| +|..+.||+|.|+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER---GSKGFGFVTmen~~dadRARa~L--Hgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER---GSKGFGFVTMENPADADRARAEL--HGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC---CCCccceEEecChhhHHHHHHHh--hcceeeceEEEEec
Confidence 35999999999999999999999999999999997633 46999999999999999999999 99999999999999
Q ss_pred ccccchhh
Q 003749 231 DDGRRLKN 238 (798)
Q Consensus 231 ~~~~~~~~ 238 (798)
+..|...+
T Consensus 171 ATarV~n~ 178 (376)
T KOG0125|consen 171 ATARVHNK 178 (376)
T ss_pred cchhhccC
Confidence 98885443
|
|
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=143.72 Aligned_cols=85 Identities=20% Similarity=0.402 Sum_probs=79.8
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
.....++|||+|||+++++++|+++|++||.|++|+|++| +.+|+++|||||+|.+.++|.+|++.| |+..+.+++|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d-~~tg~srGyaFVeF~~~e~A~~Ai~~L--nG~~l~gr~i 179 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRD-YKTGYSFGYAFVDFGSEADSQRAIKNL--NGITVRNKRL 179 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCccCcEEEEEEccHHHHHHHHHHc--CCCccCCcee
Confidence 4456779999999999999999999999999999999999 889999999999999999999999999 9999999999
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
+|.++++.
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99998764
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-15 Score=154.95 Aligned_cols=81 Identities=26% Similarity=0.424 Sum_probs=77.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||+|||+++++++|+++|++||.|.+++|++| +.||++||||||+|.+.++|.+|+..| ||..|+||.|+|.|.
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d-~~t~~skG~aFV~F~~~~~A~~Ai~~l--nG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRD-LTTNQCKGYGFVSMTNYDEAAMAILSL--NGYTLGNRVLQVSFK 346 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEc-CCCCCccceEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEEc
Confidence 47999999999999999999999999999999999 889999999999999999999999999 999999999999998
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7763
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-15 Score=117.81 Aligned_cols=89 Identities=22% Similarity=0.438 Sum_probs=81.8
Q ss_pred hhhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 144 ~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.....+.+++||||||++-++|+.|.++|+++|.|+.|.+-.| +.+..+-|||||+|.+.++|..|++.+ ||+.++.
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLd-r~kktpCGFCFVeyy~~~dA~~Alryi--sgtrLdd 105 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLD-RFKKTPCGFCFVEYYSRDDAEDALRYI--SGTRLDD 105 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccc-cCCcCccceEEEEEecchhHHHHHHHh--ccCcccc
Confidence 3445678899999999999999999999999999999999988 888888999999999999999999999 9999999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
|+|.+.|+-+-.
T Consensus 106 r~ir~D~D~GF~ 117 (153)
T KOG0121|consen 106 RPIRIDWDAGFV 117 (153)
T ss_pred cceeeeccccch
Confidence 999999985543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-11 Score=131.11 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=65.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPT-LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (798)
..|+++.|.+.+.+..+. .|+ ...+-....++.+.|+++.|...+++..+.....+..........+...|+++.|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666666665554 222 22233334555556666666666666554321111223333455556666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
..++++.+..+. +..++..+..+|.+.|++++|.+++..+.+.+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 666666655322 44555566666666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-10 Score=115.86 Aligned_cols=457 Identities=14% Similarity=0.135 Sum_probs=291.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
|..++.+| ..+++...+.+.+.+.+. ..-...+.....-.+...|+-++|......-+..++. +-++|..++-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33444444 677888888888888874 3334445555555566778999999988887775544 67888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
..++++|+++|..+...+. .|...+.-+...-++.++++-..+.-..+.+.. ......|..++.++.-.|++..|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999887743 377888888888888888888887777777653 34456788888888899999999999
Q ss_pred HHHHHHCC-CCcCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 459 FERLKECG-FSPSIISYGCLI------NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 459 ~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
++...+.. -.++...|.... ....+.|..++|++.+..-... +......-.+-...+.+.++.++|..+|..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 98887653 245555554433 3456678888888877665443 222233344556778889999999999999
Q ss_pred HHHcCCCCCHHHHHH-HHHHHHcCCChHHHH-HHHHHHHHCCCCCCcccHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC
Q 003749 532 VMRDGLKPDVVLYNN-IIRAFCGMGNMDRAI-HIVKEMQKERHRPTSRTFMPIIHGFARAGEM-KRALEIFDMMRRSGCI 608 (798)
Q Consensus 532 ~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~ 608 (798)
++.. .||..-|+. +..++.+-.+.-+++ .+|....+.-. .......+--.......+ +..-.++..+.+.|+.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 8886 445555444 444443333333343 55555544311 111111111111111222 3334455666666654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 609 PTVHTFNALILGLVEKRQMEKAIEILDEMTL----AG----------ISPNEH--TYTTIMHGYASLGDTGKAFEYFTKL 672 (798)
Q Consensus 609 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~~ 672 (798)
.++..+...|-.-...+-..++.-.+.. .+ -.|... ++..++..+-+.|+++.|..+++.+
T Consensus 321 ---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 ---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred ---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2344444433322222211111111111 00 134443 4456778888999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 673 RNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (798)
Q Consensus 673 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (798)
++.... -...|..-.+++...|++++|...+++..+.+ .+|..+-.--+.-..+..+.++|.++.....+.|. +..
T Consensus 398 IdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~ 473 (700)
T KOG1156|consen 398 IDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAV 473 (700)
T ss_pred hccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chh
Confidence 876422 24556666788999999999999999998876 34544444556666788899999999998888775 222
Q ss_pred --------HHHHH--HHHHHHcCCcccccc
Q 003749 753 --------TYTSF--INACSKAGDMQVRFS 772 (798)
Q Consensus 753 --------~~~~l--~~~~~~~g~~~~a~~ 772 (798)
.|-.+ ..+|.+.|++.+|++
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 12222 456677776655543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-11 Score=128.26 Aligned_cols=221 Identities=10% Similarity=0.049 Sum_probs=95.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH
Q 003749 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM-------KTYSMLINGF 516 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~ 516 (798)
..+...|+++.|...++++.+.... +......+...|.+.|++++|.+++..+.+.+..... ..|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443221 3444444445555555555555555555444322111 0111112222
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
....+.+...++++.+.+. ...+......+...+...|+.++|.+++++..+.. ++. -..++.+....++.++++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~--~l~~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE--RLVLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH--HHHHHHhhccCCChHHHH
Confidence 2222333333333333221 11234444455555555555555555555554421 121 111122222335555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR 673 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 673 (798)
+..+...+.... |...+.++...+.+.+++++|.+.|+.+.+. .|+..+|..+..++.+.|+.++|.+++++..
T Consensus 315 ~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555554443322 4444445555555555555555555555443 3555555555555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=145.75 Aligned_cols=261 Identities=18% Similarity=0.197 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003749 476 CLINLYTKIGKVSKALEVSKVMKSSG-IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (798)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 554 (798)
.+...+.+.|++++|++++++..... ...+...|..+...+...++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555566666666666664433322 1233444444555555566666666666666655433 34445555555 466
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG-CIPTVHTFNALILGLVEKRQMEKAIEI 633 (798)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~ 633 (798)
+++++|..++....+.. .+...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|+++
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665554432 244455556666666667777666666655332 223555666666666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003749 634 LDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIP 713 (798)
Q Consensus 634 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 713 (798)
+++.++.. +.|......++..+...|+.+++.++++...... ..|...+..+..+|...|+.++|+.++++....+ +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 76666553 2235556666666666666666666666665543 2234455666666666677777777776666544 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 714 RNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
.|......+.+++...|+.++|.++.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 566666666667767777777766666543
|
|
| >KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-15 Score=134.87 Aligned_cols=86 Identities=28% Similarity=0.514 Sum_probs=81.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+-++|||+-|+++++|.+|+..|++||.|+.|+||+| +.||+++|||||+|+++.+...|.+.. +|..|+|+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d-~vTgkskGYAFIeye~erdm~~AYK~a--dG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD-KVTGKSKGYAFIEYEHERDMKAAYKDA--DGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeee-cccCCccceEEEEeccHHHHHHHHHhc--cCceecCcEEEE
Confidence 45679999999999999999999999999999999999 999999999999999999999999998 999999999999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
.+-+.+.+.
T Consensus 176 DvERgRTvk 184 (335)
T KOG0113|consen 176 DVERGRTVK 184 (335)
T ss_pred Eeccccccc
Confidence 998877655
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-11 Score=127.74 Aligned_cols=252 Identities=12% Similarity=0.059 Sum_probs=148.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 003749 482 TKIGKVSKALEVSKVMKSSGIKHNMKTY--SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDR 559 (798)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 559 (798)
.+.|+++.|.+.+.++.+. .++.... ......+...|+++.|...++++.+..+. +......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4445555555555544442 1222111 12233444445555555555555444333 34444444555555555555
Q ss_pred HHHHHHHHHHCCCCCCc-------ccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 560 AIHIVKEMQKERHRPTS-------RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIE 632 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 632 (798)
|..++..+.+.....+. ..|..++....+..+.+...++++.+.+. ...+......+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555444322111 11222222223333445555555554322 12366777778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 003749 633 ILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712 (798)
Q Consensus 633 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (798)
++++..+. .++.... ++.+....++.+++++..+...+...+ |...+..+...|.+.|++++|.+.|+.+.+..
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~- 358 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR- 358 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 88887764 3444221 223334558888888888888876543 67778888888888888888888888888754
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 713 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
|+...|..|..++.+.|+.++|.+++++-..
T Consensus 359 -P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 -PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888888888888888888888888887654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-14 Score=142.85 Aligned_cols=258 Identities=14% Similarity=0.119 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 373 VGGFAKMGNAEAADHWFEEAKERH-ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
...+.+.|++++|++++++..... ...|...|..+...+...+++++|++.++++...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 334444444444444443322221 122333333333344444444444444444444321 123333333333 34444
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003749 452 EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG-IKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (798)
Q Consensus 452 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (798)
+++|..++.+..+.. .+...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|++.|+
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444433321 233344445555555555555555555544321 22344455555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003749 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (798)
Q Consensus 531 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 610 (798)
+.++..+. |....+.++..+...|+.+++..+++...+.. ..+...+..+..+|...|+.++|+..|++..+.... |
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-D 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-c
Confidence 55554333 34455555555555555555555555544432 223444555555566666666666666665554322 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEM 637 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (798)
..+...+..++.+.|+.++|..+..+.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555555555566666666666555543
|
|
| >KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-15 Score=123.73 Aligned_cols=80 Identities=29% Similarity=0.586 Sum_probs=74.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
-.++||||||+..+++.||+.+|.+||.+..|.|... +.|||||||+++.+|..|+..| +|..|.|..++|+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn------PPGfAFVEFed~RDA~DAvr~L--DG~~~cG~r~rVE 80 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN------PPGFAFVEFEDPRDAEDAVRYL--DGKDICGSRIRVE 80 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec------CCCceEEeccCcccHHHHHhhc--CCccccCceEEEE
Confidence 3579999999999999999999999999999999875 4899999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
++......
T Consensus 81 ~S~G~~r~ 88 (195)
T KOG0107|consen 81 LSTGRPRG 88 (195)
T ss_pred eecCCccc
Confidence 99877653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-09 Score=113.08 Aligned_cols=451 Identities=11% Similarity=0.069 Sum_probs=300.1
Q ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003749 263 REWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (798)
Q Consensus 263 ~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 342 (798)
+...++..+.++.+.+. ...+.....-.+...|+-++|....+...+.++ -+-+.|+.+.-.+-
T Consensus 23 YkkgLK~~~~iL~k~~e---------------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKFPE---------------HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHhHHHHHHHHHHhCCc---------------cchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 35556666666666654 233333444445567999999999999888654 36778999999998
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
...+|++|+++|....+.+ +-|...|.-+.-.-++.++++.....-....+... .....|..++.++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999865 33788888888888899999998888888777643 367788899999999999999999
Q ss_pred HHHHHHHcCC-CCChhhHHHH------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 423 LVRDMEEEGI-DAPIDIYHMM------MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSK 495 (798)
Q Consensus 423 ~~~~m~~~~~-~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 495 (798)
+++..++... .++...+... .......|..++|++.+...... +.-....-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 9999988652 3444444322 23446778888888887766543 11122333455788999999999999999
Q ss_pred HHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 003749 496 VMKSSGIKHNMKTYS-MLINGFLKLKDWANVF-AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR 573 (798)
Q Consensus 496 ~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 573 (798)
.++..+ ||...|. .+..++.+-.+.-++. .+|....+.-.. ....-..=+..+....-.+..-.++..+.+.|+.
T Consensus 244 ~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 244 RLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 999874 5555444 4455554344444444 666655443111 1111111111111111233444566677777754
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 003749 574 PTSRTFMPIIHGFARAGEMKRALEIFDMMRR----SG----------CIPTVHTFN--ALILGLVEKRQMEKAIEILDEM 637 (798)
Q Consensus 574 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~p~~~~~~--~li~~~~~~~~~~~A~~~~~~m 637 (798)
+ ++..+...|-.-...+-..++.-.+.. .| -.|....|+ .++..+-+.|+++.|...++..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3 444444444332222212222222211 11 135555554 4566788999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 003749 638 TLAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT 716 (798)
Q Consensus 638 ~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 716 (798)
+.. .|+. ..|..-.+.+...|++++|..++++..+.+. +|..+-..-..-..++++.++|.++.....+.|. +.
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~ 472 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GA 472 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--ch
Confidence 876 5664 4566677889999999999999999998864 4665555666667789999999999998887663 22
Q ss_pred H--------HHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 003749 717 F--------VYNI--LIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 717 ~--------~~~~--l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
. .|-. =+.+|.+.|++.+|++=|...-
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 2 1221 2457888888888887666654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-11 Score=114.54 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=76.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYA 410 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~ 410 (798)
|-.=++.+. ..+.++|.++|-+|.+.. +-...+..+|.+.|.+.|.+|.|+++...+.++--.+. ..+...|..-
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 333344333 356788888888888753 22556677788888888888888888887776511110 1233344555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
|...|-++.|+++|..+.+.+ ..-......|+..|-...+|++|+++-.++...
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 666666666666666666543 223445555555555555555555555555554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-11 Score=112.81 Aligned_cols=423 Identities=12% Similarity=0.150 Sum_probs=238.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (798)
.+..+|.+.|++++|+..|..+.+.. .++...+-.|.-++.-.|.+.+|..+-.+..+ +...-..|+....+.|
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhC
Confidence 35566777788888888877777654 44555666666666666777777776544432 3444455556666677
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHHH
Q 003749 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM-MMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~ 459 (798)
+-++-..+.+.+... ..--.+|.......-.+.+|++++++....+ ++-...|. +.-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 766666666655432 1233344555555566777888887777653 23333333 335566777777777777
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHH
Q 003749 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK-----LKDWANVFAVFEDVMR 534 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~ 534 (798)
.-.++. +.-+...-|.......+.-+-..|.+-.+.+...+-. .|-. +.-+++ -+.-+.|++++-.+.+
T Consensus 209 ~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~~f-~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 209 KVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EYPF-IEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cchh-HHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 666554 2223444555544444443333444444444433211 0111 111111 1334566666655554
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHH-----HHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003749 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPII-----HGFARAGEMKRALEIFDMMRRSGCIP 609 (798)
Q Consensus 535 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~~~~p 609 (798)
. -...--.|+-.|.+.++..+|..+.+++.-. .|-......+. .-.....++.-|.+.|...-+++..-
T Consensus 283 ~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 283 H----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred h----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 3 1222334555677888888888877765321 11112222221 11112234566666666655544332
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHH
Q 003749 610 T-VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY-EAL 687 (798)
Q Consensus 610 ~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 687 (798)
| +.--..+...+.-..++++.+..++.....-...|.. --.+..+++..|++.+|.++|-.+....++ |..+| ..|
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~L 434 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSML 434 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHH
Confidence 2 2223445555666677888888887776653333333 334667888888888888888877766555 44444 555
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 688 LKACCKSGRMQSALAVTKEMSAQKIPRNTF-VYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755 (798)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 755 (798)
.++|.+++..+.|+.++-++.. +.+.. ....+...|.+.+.+--|-+.|+++.. ..|+..-|.
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 6778888888888877755543 22332 234445667778888778888877764 456666665
|
|
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-14 Score=131.18 Aligned_cols=84 Identities=24% Similarity=0.433 Sum_probs=79.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+....+|||.|..+|+.++|++.|.+||+|.+++|++| ..|+|+||||||.|-+.++|++||..| ||.-|++|.|+-
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~M--nGqWlG~R~IRT 136 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQM--NGQWLGRRTIRT 136 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeec-ccCCcccceeEEeccchHHHHHHHHHh--CCeeeccceeec
Confidence 34568999999999999999999999999999999999 999999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+|+..+.
T Consensus 137 NWATRKp 143 (321)
T KOG0148|consen 137 NWATRKP 143 (321)
T ss_pred cccccCc
Confidence 9996664
|
|
| >PF00076 RRM_1: RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-14 Score=110.19 Aligned_cols=70 Identities=27% Similarity=0.644 Sum_probs=66.6
Q ss_pred eeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 154 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
|||+|||.++++++|+++|++||.|..+.+..+ .+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~--~~~~~~~~a~V~F~~~~~a~~a~~~l--~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN--SSGKSKGYAFVEFESEEDAEKALEEL--NGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE--TTSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc--ccccccceEEEEEcCHHHHHHHHHHc--CCCEECccCcC
Confidence 799999999999999999999999999999985 67888999999999999999999999 99999999885
|
(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A .... |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-10 Score=111.00 Aligned_cols=455 Identities=13% Similarity=0.121 Sum_probs=296.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (798)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (798)
.-+....|+..|+.+++.-...+-+-...+-..+..++.+.|++++|+..|..+.+.. .++...+..|..++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3456677889999999887765433223344456677889999999999999888753 568888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
+|..+-.+..+ +......|+....+.++-++.......+.+. ..-..+|.......-.+.+|+.+|.+++
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877643 4455566777778889988888887777653 2334556666666677899999999998
Q ss_pred HCCCCcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 464 ECGFSPSIISYGC-LINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (798)
Q Consensus 464 ~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (798)
.. .++....|. +.-+|.+..-++-+.++++-.... +..+....|.......+.-.-..|..-.+.+...+-..
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 75 344444444 345678888889888888877765 34455566655555444433334444444544432211
Q ss_pred HHHHHHHHHHcC-----CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 543 LYNNIIRAFCGM-----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNAL 617 (798)
Q Consensus 543 ~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 617 (798)
| -.+.-+++. .+-+.|++++--+.+. -......|+--|.+.+++.+|..+.+++.- ..|.......+
T Consensus 253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgv 324 (557)
T KOG3785|consen 253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGV 324 (557)
T ss_pred -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHH
Confidence 1 122233333 3456788777665543 122334456678899999999998876532 12223332222
Q ss_pred HHH-H----HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 618 ILG-L----VEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 618 i~~-~----~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
+.+ + .....+.-|...|+-.-+.+..-|. .--.++..++.-...+++.+-++..+.+.-...|.+.|| +..++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHH
Confidence 221 1 1223455677777655444433222 123445556666677899999998888765554555544 77899
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCcccc
Q 003749 692 CKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY-TSFINACSKAGDMQVR 770 (798)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~-~~l~~~~~~~g~~~~a 770 (798)
+..|++.+|+++|-.+....+..+......|.++|.+.|..+-|..++-++. -.-+..+. ..+.+-|.+.|++--|
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888876655444455677889999999999988866553 23334333 3445788888887655
Q ss_pred cccc-ccchhhhhhhhhh
Q 003749 771 FSIP-MLTKFYLFSFIWF 787 (798)
Q Consensus 771 ~~~~-~~~~~~~~~~~w~ 787 (798)
.+.. ++.+..+.-=-|.
T Consensus 481 aKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 481 AKAFDELEILDPTPENWE 498 (557)
T ss_pred HHhhhHHHccCCCccccC
Confidence 5553 3334445555673
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-10 Score=114.12 Aligned_cols=463 Identities=11% Similarity=0.030 Sum_probs=314.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+..-+..+++-+....++.-|+-+-++....+ .|....-.+..+|.-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34456666777777778888988888888765 45555556778888889999988887654322 248888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhc--C-----------CCCChh-----------hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 375 GFAKMGNAEAADHWFEEAKER--H-----------ATLNAI-----------IYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~--~-----------~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
++.+..+|+.|+.++...... . ...|.. .+..-..+|....++++|.+.|++.+..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 999999999999998832100 0 000111 1111123345556677777777777654
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003749 431 GIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF----SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM 506 (798)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 506 (798)
.+.- ...+-.|+... .-.+.+.|+.+..... ..+......+.....-...-++....-....-.++.-+.
T Consensus 171 D~~c-~Ea~~~lvs~~-----mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 171 DAKC-FEAFEKLVSAH-----MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred chhh-HHHHHHHHHHH-----hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 3221 11222222221 1122222333322111 112222222222111111111111111111112344566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 003749 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGF 586 (798)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 586 (798)
.......+-+....++.+..++++.+.+..+- ....+-.-|..+.+.|+..+-..+=.++.+.-+. ...+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHH
Confidence 66677777888899999999999999887443 4555666677888999988888888888877544 788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 666 (798)
...|+..+|.+.|.+....+.. -...|-.+...|...+..|.|+..+..+.+.- .-...-+--+.--|.+.++++.|.
T Consensus 323 l~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 9999999999999998765433 46788999999999999999999998876541 111112233444678899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ------KIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (798)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (798)
++|.++...... |...++.+.-.....+.+.+|..+|+..+.. ....-.-+++.|+.+|.+.+++++|+..++
T Consensus 401 ~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999999987654 8889999998889999999999999988731 111123468999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCccccccc
Q 003749 741 QMKQEGVQPDVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 741 ~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
+.+.. ..-|..++.++.-.|...|.++.|++.
T Consensus 480 ~aL~l-~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 480 KALLL-SPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHc-CCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 99986 345889999999999999999999876
|
|
| >PLN03213 repressor of silencing 3; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-14 Score=139.43 Aligned_cols=81 Identities=14% Similarity=0.319 Sum_probs=74.7
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCCh--hHHHHHHHhcccCCeeecceeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP--AAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..+||||||++++++++|+..|+.||.|.+|.|++ .+| ||||||+|.+. .++.+||..| ||..++||.|+|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR---ETG--RGFAFVEMssdddaEeeKAISaL--NGAEWKGR~LKV 82 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR---TKG--RSFAYIDFSPSSTNSLTKLFSTY--NGCVWKGGRLRL 82 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec---ccC--CceEEEEecCCcHHHHHHHHHHh--cCCeecCceeEE
Confidence 45999999999999999999999999999999994 467 99999999987 7899999999 999999999999
Q ss_pred ecccccchhh
Q 003749 229 KLDDGRRLKN 238 (798)
Q Consensus 229 ~~~~~~~~~~ 238 (798)
+.|++..+.+
T Consensus 83 NKAKP~YLeR 92 (759)
T PLN03213 83 EKAKEHYLAR 92 (759)
T ss_pred eeccHHHHHH
Confidence 9999886654
|
|
| >KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-15 Score=127.05 Aligned_cols=85 Identities=25% Similarity=0.513 Sum_probs=79.2
Q ss_pred hhhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 144 ~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.-.+..+++-|||||||++.||.||-..|++||+|.+|.+++| +.||+|+||||+.|++..+-.-|+.-+ ||..|.|
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRD-k~TGKSKGFaFLcYEDQRSTILAVDN~--NGiki~g 104 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRD-KKTGKSKGFAFLCYEDQRSTILAVDNL--NGIKILG 104 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEec-CCCCcccceEEEEecCccceEEEEecc--CCceecc
Confidence 3456678889999999999999999999999999999999999 999999999999999999999999988 9999999
Q ss_pred eeeeeecc
Q 003749 224 RVLTVKLD 231 (798)
Q Consensus 224 ~~~~v~~~ 231 (798)
|.|+|.--
T Consensus 105 RtirVDHv 112 (219)
T KOG0126|consen 105 RTIRVDHV 112 (219)
T ss_pred eeEEeeec
Confidence 99999643
|
|
| >TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-14 Score=148.43 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=78.0
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
..+|||||||.++++++|+++|++||+|.+|+|++| +.+|+++|||||+|.+.++|.+|++.| ||..|.|+.|+|++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l--~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSL--NGLRLQNKTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhc--ccEEECCeeEEEEe
Confidence 469999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+++..
T Consensus 80 a~~~~ 84 (352)
T TIGR01661 80 ARPSS 84 (352)
T ss_pred ecccc
Confidence 87653
|
These proteins contain 3 RNA-recognition motifs (rrm: pfam00076). |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-11 Score=127.76 Aligned_cols=461 Identities=14% Similarity=0.125 Sum_probs=264.1
Q ss_pred cCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 292 KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
..||..+|.++|.-||..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+. .|...||+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 3589999999999999999999888 9999988877778888888888888888777665 467788999
Q ss_pred HHHHHHhcCCHHH---HHHHHHHHHh----cCCCCChh--------------hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 372 IVGGFAKMGNAEA---ADHWFEEAKE----RHATLNAI--------------IYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 372 l~~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
|..+|...|++.. +.+.++.+.. .|+..-.. .-.+++....-.|-++.+++++..+.-.
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999998888655 2222222211 11110000 0112222333334444444444333222
Q ss_pred CCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003749 431 GIDAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY 509 (798)
Q Consensus 431 ~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (798)
...-.... .++-+ .....+++-..+...+.+ .++..+|..++.+....|+.+.|..++..|++.|+..+...|
T Consensus 169 a~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 169 AWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 11100111 12222 222333443333333333 367788888888888888888888888888888877777766
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH-----------HHHHHH----------
Q 003749 510 SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH-----------IVKEMQ---------- 568 (798)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~-----------~~~~~~---------- 568 (798)
..|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+.++|....+.. ++..|.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 666544 67777777777888888888887777666555555433221111 111110
Q ss_pred ---------------HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CCHHHHHHHHHHHHhcCCH---
Q 003749 569 ---------------KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG--CI-PTVHTFNALILGLVEKRQM--- 627 (798)
Q Consensus 569 ---------------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~-p~~~~~~~li~~~~~~~~~--- 627 (798)
-.|.......|...+. ....|.-++..++...+...- .. .++..|..++.-|.+.-+.
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~ 398 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHIC 398 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHH
Confidence 0111111122221111 222455566666655554321 11 2345555555444432110
Q ss_pred ---HHHHHHHH------------HHHHCCCCCCH----------------------------HHHHHHHHHHHhcCChHH
Q 003749 628 ---EKAIEILD------------EMTLAGISPNE----------------------------HTYTTIMHGYASLGDTGK 664 (798)
Q Consensus 628 ---~~A~~~~~------------~m~~~~~~p~~----------------------------~t~~~li~~~~~~g~~~~ 664 (798)
..|-..+. +.... ..||. ..-+.++..|++.-+..+
T Consensus 399 ~~i~~~~qgls~~l~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 399 SRIYYAGQGLSLNLNSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000 01111 112344445555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 665 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--IPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 665 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
++..-++....-+ ...|..||+-++.....++|..+.++..... +.-|..-|..+.+.+.+.+...++..++++|
T Consensus 478 ~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ 554 (1088)
T KOG4318|consen 478 ILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYED 554 (1088)
T ss_pred HHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 5544444433211 1468889999999999999999998887432 3345567888999999999999999999999
Q ss_pred HHcCCCCC--HHHHHHHHHHHHHcCCccccccccccch
Q 003749 743 KQEGVQPD--VHTYTSFINACSKAGDMQVRFSIPMLTK 778 (798)
Q Consensus 743 ~~~g~~pd--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 778 (798)
.+.-..-+ ..++-.+++.....|+.+.-.+..+...
T Consensus 555 ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 555 KSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred hHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 87422222 4567778888888887766666555444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-09 Score=105.37 Aligned_cols=292 Identities=13% Similarity=0.088 Sum_probs=125.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
.|+|..|++...+..+.+.. ....|..-+.+.-+.|+.+.+-+++.+.-+.--..+...+.+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35555555555554433222 23333333444445555555555555555442233444444445555555555555555
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003749 459 FERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (798)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (798)
.+++.+.+.. +.........+|.+.|++.+...++.++.+.+.-.+...-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 5555544322 344455555555555555555555555555543322210000
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 539 PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (798)
Q Consensus 539 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 618 (798)
...+|+.+++-....+..+.-...++..... .+-+...-.+++.-+.++|+.++|.++..+..+.+..++ ... .
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-L 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-H
Confidence 0122333333333333333333333333221 111233333444444455555555555544444433322 111 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (798)
-.+.+-++.+.-++..++-.... .-+...+.+|...|.+.+.+.+|.+.|+...+. .++..+|+.+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 12233344444444443333221 222344445555555555555555555544432 244445555555555555555
Q ss_pred HHHHHHHHHH
Q 003749 699 SALAVTKEMS 708 (798)
Q Consensus 699 ~A~~~~~~~~ 708 (798)
+|.++.++..
T Consensus 379 ~A~~~r~e~L 388 (400)
T COG3071 379 EAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
|
| >PLN03120 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-13 Score=128.89 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=69.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++||||||++.+++++|+++|+.||.|++|+|.+| + .++|||||+|.++++|..|+. | ||..|.||.|+|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d-~---~~~GfAFVtF~d~eaAe~All-L--nG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSE-N---ERSQIAYVTFKDPQGAETALL-L--SGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-C---CCCCEEEEEeCcHHHHHHHHH-h--cCCeeCCceEEEEe
Confidence 358999999999999999999999999999999987 3 357999999999999999994 7 99999999999998
Q ss_pred ccc
Q 003749 231 DDG 233 (798)
Q Consensus 231 ~~~ 233 (798)
+..
T Consensus 77 a~~ 79 (260)
T PLN03120 77 AED 79 (260)
T ss_pred ccC
Confidence 753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-10 Score=109.87 Aligned_cols=295 Identities=14% Similarity=0.138 Sum_probs=209.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
..|+|.+|+++..+..+.+ +.....|..-+++--+.|+.+.+-.++.+..+.--.++...+-+........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4588888888887766665 223444555556667777777777777777765334455666666677777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 003749 493 VSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH 572 (798)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 572 (798)
-+.++.+.+ +.+.........+|.+.|++.+...++..+.+.+.-.+...-. |
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~------------------l-------- 227 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR------------------L-------- 227 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH------------------H--------
Confidence 777776654 3356666777777777777777777777777765543322110 0
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652 (798)
Q Consensus 573 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~l 652 (798)
...+|..+++-....+..+.-...++..... ..-+...-.+++.-+.++|+.++|.+++.+..+++..++. ..
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~ 300 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CR 300 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HH
Confidence 1234555555555555555555555554332 2235667777888899999999999999999888655552 22
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003749 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDV 732 (798)
Q Consensus 653 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 732 (798)
...+.+-++.+.-++..++-...... +...+.+|+..|.+.+.|.+|...|+...+.. ++..+|+.+.++|.+.|+.
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCCh
Confidence 23566788888888888877766433 56899999999999999999999999888764 9999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 003749 733 WEAADLMQQMKQE 745 (798)
Q Consensus 733 ~~A~~~~~~m~~~ 745 (798)
.+|.++.++....
T Consensus 378 ~~A~~~r~e~L~~ 390 (400)
T COG3071 378 EEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-08 Score=105.04 Aligned_cols=299 Identities=12% Similarity=0.125 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---
Q 003749 470 SIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN------MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD--- 540 (798)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--- 540 (798)
++..|..-+.. ..|+..+-...|.++... +.|. ...|..+...|-..|+++.|..+|++..+-...--
T Consensus 348 nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 34455444433 356677777888887764 2221 34677888899999999999999999887543311
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-----------------CCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR-----------------PTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (798)
Q Consensus 541 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 603 (798)
..+|..-..+=.+..+++.|++++++....-.. -+...|...++..-..|-++....+|++++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555566666777888898888876543111 122345556666666788899999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCC
Q 003749 604 RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYAS---LGDTGKAFEYFTKLRNEGLEL 679 (798)
Q Consensus 604 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~ 679 (798)
+..+. +....-....-+-...-++++.+++++-+..-..|+. ..|++.+.-+.+ .-.++.|..+|++.++ |..|
T Consensus 505 dLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 87654 3333322333345566788999998876655334544 356655544332 2358999999999999 5555
Q ss_pred CHHHHHHHHHHH--HHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 680 DVFTYEALLKAC--CKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755 (798)
Q Consensus 680 ~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 755 (798)
...-+-.|+.+- -+.|....|+.+++++... +.+. ...||+.|.-.+..=-+..-..++++.++. -||...-.
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~ 659 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKARE 659 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHH
Confidence 544333343332 2457888999999987643 2222 236888877655443334455677777764 55654433
Q ss_pred ---HHHHHHHHcCCcccccccccc
Q 003749 756 ---SFINACSKAGDMQVRFSIPML 776 (798)
Q Consensus 756 ---~l~~~~~~~g~~~~a~~~~~~ 776 (798)
.+.+.=++.|.++.|..|.+.
T Consensus 660 mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 660 MCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHh
Confidence 334566889999999988543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-09 Score=111.24 Aligned_cols=440 Identities=14% Similarity=0.088 Sum_probs=258.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (798)
+-++.+...|++++|.+...++...+ +.+...+..-+.++.+.++|++|+.+.+.-... ..+.+.+..-+-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34677888999999999999999876 667778888888999999999999765443221 111112123334455789
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
+.++|+..++-.... +..+...-...+.+.|++++|+++|+.+.+.+.+- +...-..++..-. +...
T Consensus 94 k~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~- 161 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV- 161 (652)
T ss_pred cHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-
Confidence 999999999833222 44466666788999999999999999998876432 1112222221111 1111
Q ss_pred HHHHHCCCCcCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHC--------CCC-----CCHHHH-HHHHHHHHhcCCH
Q 003749 460 ERLKECGFSPSIISYGC---LINLYTKIGKVSKALEVSKVMKSS--------GIK-----HNMKTY-SMLINGFLKLKDW 522 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~--------~~~-----~~~~~~-~~ll~~~~~~~~~ 522 (798)
+.+......+ ..+|.. ....+...|++.+|++++....+. ... -...+. --|...+...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1122221222 223433 345677889999999999888321 111 011111 1234556678999
Q ss_pred HHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChH-HHHHHHHHHHHCCC----------CCCcccH-HHHHHHH
Q 003749 523 ANVFAVFEDVMRDGLKPDV----VLYNNIIRAFCGMGNMD-RAIHIVKEMQKERH----------RPTSRTF-MPIIHGF 586 (798)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~----------~~~~~~~-~~li~~~ 586 (798)
++|..+|..+++.... |. +.-|.|+.+-....-++ .++..++....... ....... +.++..|
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887654 33 33344444322222122 12222222211100 0000111 1122222
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL--VEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGK 664 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 664 (798)
.+..+.+.++...... ..| ...+.+++..+ ++...+.+|.+++....+....-.....-.++......|+++.
T Consensus 320 --tnk~~q~r~~~a~lp~--~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPG--MSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred --hhhHHHHHHHHHhCCc--cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2333444444333221 122 33444444332 2233577888888777665433345566677788889999999
Q ss_pred HHHHHH--------HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHH----HHHcC
Q 003749 665 AFEYFT--------KLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ--KIPRNTFVYNILIDG----WARRG 730 (798)
Q Consensus 665 A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~----~~~~g 730 (798)
|++++. .+.+.+..| .+...+...+.+.++.+.|..++.+.+.. .-........++++- -.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999998 455444433 35566777788888777777777766531 001222333444433 34789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 731 DVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 731 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
+.++|..+++++.+. ..+|..+...++.+|+...
T Consensus 473 ~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 473 NEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred chHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC
Confidence 999999999999885 3567888899999998764
|
|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.9e-14 Score=147.36 Aligned_cols=80 Identities=26% Similarity=0.468 Sum_probs=76.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+..++||||||++++++++|+++|++||.|++|+++.| +.||+++|||||+|.+.++|.+|++.| ||..|+||.|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~l--nG~~i~GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhc--CCeEEecceeee
Confidence 45679999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred ecc
Q 003749 229 KLD 231 (798)
Q Consensus 229 ~~~ 231 (798)
+..
T Consensus 182 ~rp 184 (612)
T TIGR01645 182 GRP 184 (612)
T ss_pred ccc
Confidence 854
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-09 Score=109.67 Aligned_cols=446 Identities=12% Similarity=0.083 Sum_probs=265.1
Q ss_pred cCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003749 248 AGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGI 327 (798)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 327 (798)
++++|+. ++|.+..++++...|. +...+..-+.++.+.++|++|+.+.+.-...
T Consensus 22 ~~~~~e~---------e~a~k~~~Kil~~~pd---------------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-- 75 (652)
T KOG2376|consen 22 HGKNGEY---------EEAVKTANKILSIVPD---------------DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-- 75 (652)
T ss_pred hccchHH---------HHHHHHHHHHHhcCCC---------------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--
Confidence 7888887 9999999999999886 5666777888889999999999555443221
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChhhHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-NAIIYGN 406 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 406 (798)
..+...+..-.-+..+.+..++|+..++-+-+ .+..+...-...+.+.|++++|+.+|+.+.+.+..- +...-.+
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 11111112223444578999999999983322 245577777888999999999999999998774321 1222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC-C-cCH----
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTIIGNEEKCLIVFERLKEC-------GF-S-PSI---- 471 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~-~-~~~---- 471 (798)
++.+-. .-.+. .+......+ +-..+......+...|++.+|+++++..... +- . -+.
T Consensus 152 l~a~~a----~l~~~----~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 152 LLAVAA----ALQVQ----LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHH----hhhHH----HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 221111 11111 122221111 2333445566778899999999999988322 11 1 011
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH--HHHHHHHHHHHcCC-------
Q 003749 472 -ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMK----TYSMLINGFLKLKDWA--NVFAVFEDVMRDGL------- 537 (798)
Q Consensus 472 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~------- 537 (798)
.+-..|.-.+-..|+.++|..++..++..+. +|.. .-|.|+.+ ....++- .++..++.......
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 1223455667889999999999999998763 3432 22333322 2222211 12222222211100
Q ss_pred ---CCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 538 ---KPDVVLY-NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA--RAGEMKRALEIFDMMRRSGCIPTV 611 (798)
Q Consensus 538 ---~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~p~~ 611 (798)
.-..+.. +.++.+|. +..+.+.++....... . -...+..++..+. +...+.++.+++....+....-..
T Consensus 302 s~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~--~-p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~ 376 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGM--S-PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK 376 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCcc--C-chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH
Confidence 0011111 22333332 3333333333322211 1 2334444444433 233567777777777665444345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILD--------EMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE--GLELDV 681 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~--------~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 681 (798)
.+.-+++......|+++.|++++. ...+.+..| .+-..+...+.+.++.+.|..++.+.+.. .-....
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 666677778889999999999998 444444444 34455666777888877788888777643 011122
Q ss_pred H----HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 682 F----TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 682 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
. ++..+...-.+.|+.++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 2 33333334457799999999999999976 68999999999999987 677777775554
|
|
| >PF14259 RRM_6: RNA recognition motif (a | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=104.83 Aligned_cols=70 Identities=33% Similarity=0.668 Sum_probs=64.4
Q ss_pred eeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 154 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
|||+|||+++++++|+++|+.||.|..+++..+ +. |+++|+|||+|.+.++|.+|+..+ +|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~-~~-~~~~~~a~v~f~~~~~a~~al~~~--~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN-KD-GQSRGFAFVEFSSEEDAKRALELL--NGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES-TT-SSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee-ec-cccCCEEEEEeCCHHHHHHHHHHC--CCcEECCEEcC
Confidence 799999999999999999999999999999997 55 899999999999999999999998 88999999875
|
k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A .... |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.8e-11 Score=131.98 Aligned_cols=218 Identities=11% Similarity=0.057 Sum_probs=156.0
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHH---------HcCChHHHHHHHHHHHHCCCCCCH
Q 003749 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYA---------RRGDMHRARQTFENMRARGIEPTL 331 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~ 331 (798)
...+.|...|+++++.+|. +...|..+..+|. ..+++++|+..++++.+.+ +.+.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~---------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~ 338 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN---------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNP 338 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCH
Confidence 3457899999999999887 4444555544443 2345789999999998875 4467
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
..+..+..++...|++++|+..|++.++.+ +.+...|..+...|...|++++|+..|+++.+.+.. +...+..++..+
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~ 416 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHH
Confidence 778888888888899999999999998875 335778888888899999999999999998887544 333344445556
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 491 (798)
...|++++|++.++++.+...+.+...+..+..+|...|+.++|...+.++.... ..+....+.+...|...| ++|.
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~ 493 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERAL 493 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHH
Confidence 6678888888888887765423345556777778888888888888888776542 113444555666666666 3666
Q ss_pred HHHHHHHH
Q 003749 492 EVSKVMKS 499 (798)
Q Consensus 492 ~~~~~m~~ 499 (798)
..++.+.+
T Consensus 494 ~~l~~ll~ 501 (553)
T PRK12370 494 PTIREFLE 501 (553)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
| >TIGR01645 half-pint poly-U binding splicing factor, half-pint family | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-13 Score=145.63 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=77.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++||||||++++++++|+++|++||.|+++++.+| +.+|++||||||+|++.++|.+|++.| |+..|+|+.|+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kAI~am--Ng~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCcCCeEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999999 789999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
++...
T Consensus 280 kAi~p 284 (612)
T TIGR01645 280 KCVTP 284 (612)
T ss_pred ecCCC
Confidence 88654
|
In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. |
| >TIGR01659 sex-lethal sex-lethal family splicing factor | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-13 Score=137.90 Aligned_cols=83 Identities=23% Similarity=0.414 Sum_probs=77.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc--eeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~ 227 (798)
..++|||+|||.++++++|+++|++||.|++++|++| +.+|++||||||+|++.++|.+|++.| |++.+.| ++|+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~~~g~~~~l~ 268 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD-KLTGTPRGVAFVRFNKREEAQEAISAL--NNVIPEGGSQPLT 268 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCccCCCceeEE
Confidence 3568999999999999999999999999999999998 889999999999999999999999999 9999876 7899
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++.+.
T Consensus 269 V~~a~~~~ 276 (346)
T TIGR01659 269 VRLAEEHG 276 (346)
T ss_pred EEECCccc
Confidence 99987654
|
This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). |
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-13 Score=120.59 Aligned_cols=88 Identities=24% Similarity=0.440 Sum_probs=83.6
Q ss_pred hhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 145 ~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
..+..++|+|||-.||.+..+.+|-+.|-.||.|.+.++..| |.|..||.||||.|+++.+++.||.+| ||+.|+-+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvD-RATNQSKCFGFVSfDNp~SaQaAIqAM--NGFQIGMK 355 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQAM--NGFQIGMK 355 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeeh-hccccccceeeEecCCchhHHHHHHHh--cchhhhhh
Confidence 346678899999999999999999999999999999999999 999999999999999999999999999 99999999
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
+|+|.+.+++.
T Consensus 356 RLKVQLKRPkd 366 (371)
T KOG0146|consen 356 RLKVQLKRPKD 366 (371)
T ss_pred hhhhhhcCccc
Confidence 99999998874
|
|
| >KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-13 Score=118.70 Aligned_cols=78 Identities=23% Similarity=0.427 Sum_probs=75.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
..|-|-||.+.++.++|+.+|++||.|.+|.|.+| +.|+.++|||||-|.+..+|+.|+++| +|..|+|+.|.|++|
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrd-r~Tr~sRgFaFVrf~~k~daedA~dam--DG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRD-RYTRQSRGFAFVRFHDKRDAEDALDAM--DGAVLDGRELRVQMA 90 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccc-cccccccceeEEEeeecchHHHHHHhh--cceeeccceeeehhh
Confidence 48999999999999999999999999999999999 999999999999999999999999999 999999999999998
Q ss_pred c
Q 003749 232 D 232 (798)
Q Consensus 232 ~ 232 (798)
+
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 5
|
|
| >KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-13 Score=122.13 Aligned_cols=82 Identities=22% Similarity=0.447 Sum_probs=76.3
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
...++++|||||++..++|++|++.|+.||.|.+|||.++ +||+||-|++.|+|..||..+ |+..|.|..+
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-------qGYaFVrF~tkEaAahAIv~m--Nntei~G~~V 230 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-------QGYAFVRFETKEAAAHAIVQM--NNTEIGGQLV 230 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-------cceEEEEecchhhHHHHHHHh--cCceeCceEE
Confidence 3467899999999999999999999999999999999999 999999999999999999999 9999999999
Q ss_pred eeecccccchh
Q 003749 227 TVKLDDGRRLK 237 (798)
Q Consensus 227 ~v~~~~~~~~~ 237 (798)
++.|-+.....
T Consensus 231 kCsWGKe~~~~ 241 (321)
T KOG0148|consen 231 RCSWGKEGDDG 241 (321)
T ss_pred EEeccccCCCC
Confidence 99998766433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.6e-09 Score=110.23 Aligned_cols=294 Identities=15% Similarity=0.138 Sum_probs=212.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM-- 379 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-- 379 (798)
.+..+...|++++|++.++.-... +.............|.+.|+.++|..+|..+++++. .|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 345678899999999999886665 333455667888999999999999999999999863 2555556666665322
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 380 ---GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME-RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 380 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
.+.+...++|+++...- |...+...+...+..-..|. .+...+..+...|++ .++..|-..|....+..-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 35778889999887763 33333333333333333443 355666777888864 4566777777766666666
Q ss_pred HHHHHHHHHC----C----------CCcCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003749 456 LIVFERLKEC----G----------FSPSI--ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL 519 (798)
Q Consensus 456 ~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 519 (798)
..++..+... + -.|.. .++..+...|...|++++|++++++.++.. +..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 6666665432 1 12333 344666788999999999999999999873 23366888889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCccc--------HHHHHHHHHhcCC
Q 003749 520 KDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRT--------FMPIIHGFARAGE 591 (798)
Q Consensus 520 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~~~ 591 (798)
|++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+.+..+.... ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987666 777777888889999999999999999887764322222 1345667899999
Q ss_pred HHHHHHHHHHHHH
Q 003749 592 MKRALEIFDMMRR 604 (798)
Q Consensus 592 ~~~a~~~~~~~~~ 604 (798)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-09 Score=110.23 Aligned_cols=410 Identities=13% Similarity=0.050 Sum_probs=250.2
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 003749 325 RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIY 404 (798)
Q Consensus 325 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 404 (798)
..+..|...|-.+.-++...|+++.+.+.|++....- --....|+.+...|.-.|.-..|..++++.......|+..+-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455688889999999999999999999999987642 336778999999999999999999999887766544544443
Q ss_pred HHHH-HHHH-hcCChHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC
Q 003749 405 GNII-YAQC-QTRNMERAEALVRDMEEE--GI--DAPIDIYHMMMDGYTII-----------GNEEKCLIVFERLKECGF 467 (798)
Q Consensus 405 ~~l~-~~~~-~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~ 467 (798)
..++ ..|. +.+.++++++.-.+++.. +. ......|..+.-+|... ....+++..+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333 3333 567888888887777762 21 12234455555555322 234567777888777644
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
. |..+.-.+.--|+..++++.|.+..++..+.+-..+...|..|...+...+++.+|+.+.+.....-.. |......-
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~ 553 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGK 553 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhh
Confidence 2 222222334457788899999999999998866778889999998999999999999998877654211 22222222
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCC----------------------------CCCCcccHHHHHHHH-HhcCCHHHHHHH
Q 003749 548 IRAFCGMGNMDRAIHIVKEMQKER----------------------------HRPTSRTFMPIIHGF-ARAGEMKRALEI 598 (798)
Q Consensus 548 i~~~~~~g~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~~li~~~-~~~~~~~~a~~~ 598 (798)
+..-...++.++++.....+...- ..-...++..+.... .+.........
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 222233455555554443332210 000001111111000 00000000000
Q ss_pred HHHHHHcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003749 599 FDMMRRSGCI--PT------VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT 670 (798)
Q Consensus 599 ~~~~~~~~~~--p~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 670 (798)
+...-.. ++ ...|......+.+.++-++|...+.+..... .-....|......+...|.+++|.+.|.
T Consensus 633 ---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 ---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0000000 11 2234444555666677777776666665432 2334455555566666777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 671 KLRNEGLELDVFTYEALLKACCKSGRMQSALA--VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 671 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.....+.. +.....++..++.+.|+-.-|.. ++..+.+.+ +.+...|-.++..+.+.|+.+.|.+.|.-..+
T Consensus 709 ~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 77766543 56667777777777776555555 777777766 56777777777777777777777777776655
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-08 Score=100.22 Aligned_cols=451 Identities=12% Similarity=0.117 Sum_probs=266.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR-GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
-++.|-..+.....+|+...-+..|++.+.. -+.-...+|...+...-..+-.+.++.+|++-++. +...-+..+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 3456677777778899999999999988764 22223447888888888889999999999999875 445577888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCC--hhhHHHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERH------ATLNAIIYGNIIYAQCQTRNMER---AEALVRDMEEEGIDAP--IDIYHMM 442 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~~~~~--~~~~~~l 442 (798)
..+++.+++++|.+.+......+ .+.+...|.-+....++.-+.-. ...+++.++.+ -+| -..|.+|
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 88999999999999988875432 23456667766666665544332 33344444433 223 3568999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH----------------------HHHHHHHHHHHHC
Q 003749 443 MDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV----------------------SKALEVSKVMKSS 500 (798)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------------------~~A~~~~~~m~~~ 500 (798)
++-|.+.|.+++|..+|++....- ..+.-|..+.+.|+..... +-.+.-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999999999999999999877641 2344455555555443221 1222223333222
Q ss_pred C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHcCCChHHHHHH
Q 003749 501 G-----------IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP------DVVLYNNIIRAFCGMGNMDRAIHI 563 (798)
Q Consensus 501 ~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~ 563 (798)
+ -..++..|..-+..+ .|+..+....|.+.++. +.| -...|..+...|...|+++.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 1 011222333222222 35556666666666553 111 234567777777788888888888
Q ss_pred HHHHHHCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------CHHHHHHHHHHHHh
Q 003749 564 VKEMQKERHRPT---SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP-----------------TVHTFNALILGLVE 623 (798)
Q Consensus 564 ~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----------------~~~~~~~li~~~~~ 623 (798)
|++..+....-- ..+|..-...-.+..+++.|+++++++...--.+ +...|..+++..-.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 877766543211 1233333334445666777777777665431110 22345555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc-C--ChHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD-VFTYEALLKACCKS-G--RMQS 699 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g--~~~~ 699 (798)
.|-++....+++++++..+- +..........+..+.-++++.+++++-+..-.-|+ ...|+..+.-+.+. | .++.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 67777777777777766532 222222222234455557777777776655433333 34566666555442 2 4778
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 003749 700 ALAVTKEMSAQKIPRNTFVYNILID--GWARRGDVWEAADLMQQMKQEGVQPDV--HTYTSFIN 759 (798)
Q Consensus 700 A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~l~~ 759 (798)
|..+|+++++ +.+|...-+--|+. .=-+.|....|+.++++.... +.+.. ..|+.+|.
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 8888888887 44443332222222 222467777888888886653 55443 35666654
|
|
| >KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-13 Score=120.23 Aligned_cols=85 Identities=26% Similarity=0.524 Sum_probs=80.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++||||+|..+|+|.-|...|-.||.|++|.+..| -.++|+||||||+|+-.++|.+||..| |+..+.||.|+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlD-yesqkHRgFgFVefe~aEDAaaAiDNM--nesEL~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLD-YESQKHRGFGFVEFEEAEDAAAAIDNM--NESELFGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccc-hhcccccceeEEEeeccchhHHHhhcC--chhhhcceeEEEe
Confidence 3459999999999999999999999999999999999 789999999999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
++++-+..
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99988755
|
|
| >KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-13 Score=108.17 Aligned_cols=79 Identities=23% Similarity=0.316 Sum_probs=75.8
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+-.|||.++.++++|+++.+.|..||+|+++.+..| +.||-.|||+.|+|++.+.|++|+.++ ||..|.|+.|.|.|
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLD-RRtGy~KGYaLvEYet~keAq~A~~~~--Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLD-RRTGYVKGYALVEYETLKEAQAAIDAL--NGAELLGQNVSVDW 148 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccc-cccccccceeeeehHhHHHHHHHHHhc--cchhhhCCceeEEE
Confidence 337999999999999999999999999999999999 999999999999999999999999999 99999999999998
Q ss_pred cc
Q 003749 231 DD 232 (798)
Q Consensus 231 ~~ 232 (798)
+.
T Consensus 149 ~F 150 (170)
T KOG0130|consen 149 CF 150 (170)
T ss_pred EE
Confidence 84
|
|
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-13 Score=114.86 Aligned_cols=82 Identities=28% Similarity=0.490 Sum_probs=77.7
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..+..+||||||+..++++.|.++|-+.|+|.++++.+| +.+.+++|||||+|.++++|.-|++.| |.+.+.||+|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkD-rv~~~~qGygF~Ef~~eedadYAikil--n~VkLYgrpIr 82 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKD-RVTQKHQGYGFAEFRTEEDADYAIKIL--NMVKLYGRPIR 82 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchh-hhcccccceeEEEEechhhhHHHHHHH--HHHHhcCceeE
Confidence 345679999999999999999999999999999999999 889999999999999999999999999 99999999999
Q ss_pred eeccc
Q 003749 228 VKLDD 232 (798)
Q Consensus 228 v~~~~ 232 (798)
|+-+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 98876
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-09 Score=117.26 Aligned_cols=470 Identities=11% Similarity=0.041 Sum_probs=286.6
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI-EMSLVTYSIIVG 374 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~l~~ 374 (798)
...|..|...|...-|...|.+.|+++-+.+ ..+...+......|++..++++|..+.-...+... .--..-|..+.-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4568889999998889999999999999886 55777889999999999999999998433332210 112233445556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.|.+.++...|+.-|+...+.++. |...|..++.+|.+.|++..|.++|.+..... +.+...-.....+.+..|++.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHH
Confidence 678889999999999999887655 88899999999999999999999999888764 2223333444556678899999
Q ss_pred HHHHHHHHHHC------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHhcCC
Q 003749 455 CLIVFERLKEC------GFSPSIISYGCLINLYTKIGKVSKALEVSKVM-------KSSGIKHNMKTYSMLINGFLKLKD 521 (798)
Q Consensus 455 A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~~~~~~~~~ll~~~~~~~~ 521 (798)
|+..+..+... +..--..++-.+...+...|-..+|.+++++. .......+...|..+.++|.---.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 99988877542 11112334444444444445444444444443 333323344444444333321100
Q ss_pred HH------HHHHHHH-HHHHcCC--------------------CCCHHHHHHHHHHHHc----CC----ChHHHHHHHHH
Q 003749 522 WA------NVFAVFE-DVMRDGL--------------------KPDVVLYNNIIRAFCG----MG----NMDRAIHIVKE 566 (798)
Q Consensus 522 ~~------~a~~~~~-~~~~~g~--------------------~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~ 566 (798)
.+ ....++. +....+. ..+..+|..|+..|.+ .| +...|+..+.+
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 00 0111111 1111111 1123444444443332 11 23356666666
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003749 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNE 646 (798)
Q Consensus 567 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 646 (798)
.++..-. +..+|+.|.-. ...|.+.-+...|-+.+..... ...+|..+...+.++.+++-|...|...+... +.|.
T Consensus 809 aV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 809 AVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcC-chhh
Confidence 6655322 55666666544 5567777777777666554333 56677777777788888888888888777653 4456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH--HHc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---------CCCC
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKL--RNE--GLELDVFTYEALLKACCKSGRMQSALAVTKEMSA---------QKIP 713 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~ 713 (798)
..|-.........|+.-++..+|..- ... |--++..-|-+........|+.++-+...+++.. .+.+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 66766666666778888888888762 222 3233444444444444556665544433333321 1345
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHH----HHHHHHHcCCcccccc
Q 003749 714 RNTFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQPDVHTYTS----FINACSKAGDMQVRFS 772 (798)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~~~~~----l~~~~~~~g~~~~a~~ 772 (798)
.....|.+.+..+-+.+.+++|.++..+.+.. ..+.|..+|+. +...++..|.++.|..
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 66778888888888888888888887776531 12334445553 3344555566654443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.5e-11 Score=110.50 Aligned_cols=234 Identities=11% Similarity=0.019 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
..-+-+.++|.+.|.+.+|.+.|+..++. .+-+.||..|...|.+..+...|+.+|.+..+.. +-|+....-+.+++
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHH
Confidence 34467888899999999999988888775 4577788888899999999999999998887762 33555555677888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL 491 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 491 (798)
-..++.++|.++++...+.. ..++...-.+...|.-.++.+-|+.+|.++++.|+. +...|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88889999999998888764 456677777778888888999999999999988876 7788888888888888898888
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003749 492 EVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (798)
Q Consensus 492 ~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 569 (798)
..|.+....--.++ ..+|-.|.......||+..|.+.|+..+.++.. +...++.|.-.-.+.|++++|..++....+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 88888776533333 346666666667778888888888877766544 556777777777778888888888877665
Q ss_pred CC
Q 003749 570 ER 571 (798)
Q Consensus 570 ~~ 571 (798)
..
T Consensus 458 ~~ 459 (478)
T KOG1129|consen 458 VM 459 (478)
T ss_pred hC
Confidence 53
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-10 Score=127.13 Aligned_cols=184 Identities=11% Similarity=-0.001 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYA---------VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
+++|+.+|++..+.. +.+...|..+..+|. ..+++++|...+++.++.+ +-+..+|..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 456666666666552 122333433333332 1123555555555555543 22455555555555555566
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (798)
++|+..|+++.+.+.. +...+..+..+|...|++++|...+++..+.+.. +...+..++..+...|++++|+..++++
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6666666555554322 3445555555555555555555555555554311 1222222333344445555555555554
Q ss_pred HHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 463 KECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 463 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
.+....-+...+..+..+|...|+.++|...+.++..
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 4332111233344444555555555555555555433
|
|
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-13 Score=112.33 Aligned_cols=81 Identities=30% Similarity=0.589 Sum_probs=72.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+..++|||||||.+|.+.+|+++|.+||.|.+|.+... -....||||+|+++.+|..||..- +|..++|..|+|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygR--dGYdydg~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGR--DGYDYDGCRLRV 77 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC----CCCCCeeEEEecCccchhhhhhcc--cccccCcceEEE
Confidence 44679999999999999999999999999999988543 334689999999999999999988 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++...
T Consensus 78 Efprggr 84 (241)
T KOG0105|consen 78 EFPRGGR 84 (241)
T ss_pred EeccCCC
Confidence 9997653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-10 Score=111.26 Aligned_cols=198 Identities=15% Similarity=0.127 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..+..+...|...|++++|++.++++.+.. +.+...+..+...|...|++++|++.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 445566666777777777777777766653 3345566666666777777777777777666653 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
...|++++|++.|+++..... ......+..+..++...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 667777777777766655321 1123344455555566666666666666555542 22334455555555555555555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
..++++..+. ...+...+..++..+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555443 12233444444455555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN03121 nucleic acid binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=119.11 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=68.3
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+.+|||+||++.+|+++|+++|+.||.|.+|+|++| ++.+|||||+|.+++++..|+ .| ||..|.+++|.|..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D----~et~gfAfVtF~d~~aaetAl-lL--nGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS----GEYACTAYVTFKDAYALETAV-LL--SGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC----CCcceEEEEEECCHHHHHHHH-hc--CCCeeCCceEEEEe
Confidence 458999999999999999999999999999999988 455789999999999999999 46 99999999999876
Q ss_pred cc
Q 003749 231 DD 232 (798)
Q Consensus 231 ~~ 232 (798)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 53
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-07 Score=92.78 Aligned_cols=294 Identities=9% Similarity=-0.001 Sum_probs=211.7
Q ss_pred cCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 449 IGNEEKCLIVFERLKEC-GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFA 527 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 527 (798)
.++...+...+.-+... -++-|+.....+.+++...|+.++|+..|++.+..+ ..+..........+.+.|++++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444443333222 245578888999999999999999999999988753 1122222333344567788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 528 VFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC 607 (798)
Q Consensus 528 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 607 (798)
+...+....- -....|..-+..+....+++.|+.+-++.+..+.. +...+..-...+...++.++|.-.|+.++....
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 8887765421 23445555556666788899999999888876543 555565556778889999999999999887643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 608 IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIM-HGYASL-GDTGKAFEYFTKLRNEGLELDVFTYE 685 (798)
Q Consensus 608 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li-~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~ 685 (798)
-+..+|.-|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..|... ..-++|.+++++.+...+. -.-..+
T Consensus 366 -~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~ 442 (564)
T KOG1174|consen 366 -YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVN 442 (564)
T ss_pred -hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHH
Confidence 27889999999999999999998877665443 234555665553 333322 2357899999888765432 244567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVH 752 (798)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 752 (798)
.+...|...|+.++++.++++.... .+|....+.|++.+...+.+++|++.|..... +.|+..
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 7788899999999999999998874 58999999999999999999999999998886 455543
|
|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=126.08 Aligned_cols=83 Identities=22% Similarity=0.412 Sum_probs=77.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~ 227 (798)
..++.||||.||.++.|++|.-+|.+.|+|-++++++| +.+|.+||||||.|.+.+.|+.||+.| |++.|. |+.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~l--nn~Eir~GK~ig 157 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMD-PFSGDNRGYAFVTFCTKEEAQEAIKEL--NNYEIRPGKLLG 157 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeec-ccCCCCcceEEEEeecHHHHHHHHHHh--hCccccCCCEeE
Confidence 34569999999999999999999999999999999999 999999999999999999999999999 999986 99999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|+.+-.+
T Consensus 158 vc~Svan 164 (506)
T KOG0117|consen 158 VCVSVAN 164 (506)
T ss_pred EEEeeec
Confidence 9877444
|
|
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=114.93 Aligned_cols=81 Identities=20% Similarity=0.463 Sum_probs=78.3
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+.|.|.-||..+|+++++.+|+..|+|++|++++| +.+|+|-|||||.|-++++|.+|+..+ ||..+..+.|+|.++
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRD-KitGqSLGYGFVNYv~p~DAe~Aintl--NGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTL--NGLRLQNKTIKVSYA 118 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeec-cccccccccceeeecChHHHHHHHhhh--cceeeccceEEEEec
Confidence 48999999999999999999999999999999999 999999999999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
++..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 8874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-08 Score=94.78 Aligned_cols=399 Identities=11% Similarity=0.031 Sum_probs=260.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
+...-..++.+|-..|+-+.|+..+.......-. .--|.|+..+-+.| +-.++.--+.+.+.. .+.- ...|
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~---p~inlMla~l~~~g~r~~~~vl~ykevvre-cp~a----L~~i 167 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRS---PRINLMLARLQHHGSRHKEAVLAYKEVIRE-CPMA----LQVI 167 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccc---hhHHHHHHHHHhccccccHHHHhhhHHHHh-cchH----HHHH
Confidence 3444566788898999999999888777665322 22344444444332 222333333333322 1111 1112
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcC
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ--TRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIG 450 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g 450 (798)
.+..+.+ +..+...-..|-.....++..+....+.+++. .++-..|...+--+.... +..++.....+.+++...|
T Consensus 168 ~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G 246 (564)
T KOG1174|consen 168 EALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG 246 (564)
T ss_pred HHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc
Confidence 2222111 11111111122222233344444445555443 444444555554444432 5667888999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003749 451 NEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFE 530 (798)
Q Consensus 451 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 530 (798)
+.++|+-.|++.+..+.. ++.......-.+.+.|++++...+...+.... ..+...|-.-+..+...+++..|+.+-+
T Consensus 247 dn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred CchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998875321 23334444555677888888888777776542 2344445555555667899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003749 531 DVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610 (798)
Q Consensus 531 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 610 (798)
+.++.... +...+-.-..++...|+.++|.-.|+..+...+ -+...|..|+.+|.-.|++.+|.-+-+...+. ...+
T Consensus 325 K~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~s 401 (564)
T KOG1174|consen 325 KCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNS 401 (564)
T ss_pred HHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcc
Confidence 98876443 455666667788999999999999999887653 36789999999999999999998887766554 2225
Q ss_pred HHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 611 VHTFNALI-LGLV-EKRQMEKAIEILDEMTLAGISPNE-HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEAL 687 (798)
Q Consensus 611 ~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 687 (798)
..+.+.+. ..+. .-.--++|.+++++.... .|+. -..+.+...|...|..+.++.++++.+.. .+|....+.|
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~L 477 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHL 477 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHH
Confidence 55555442 2222 223347899999887764 4553 45667777888999999999999988764 5788999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCC
Q 003749 688 LKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
.+.+...+.+++|+..|..+...+
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC
Confidence 999999999999999999998876
|
|
| >KOG0226 consensus RNA-binding proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=110.10 Aligned_cols=78 Identities=24% Similarity=0.506 Sum_probs=74.3
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.++.+||+|.|..+++++.|...|++|-.....++++| ++||+++|||||.|.+++++.+|++.| ||..++.|+|+.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd-kRTgKSkgygfVSf~~pad~~rAmrem--~gkyVgsrpikl 264 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMREM--NGKYVGSRPIKL 264 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhcccccc-ccccccccceeeeecCHHHHHHHHHhh--cccccccchhHh
Confidence 56779999999999999999999999999999999999 999999999999999999999999999 999999999876
Q ss_pred e
Q 003749 229 K 229 (798)
Q Consensus 229 ~ 229 (798)
.
T Consensus 265 R 265 (290)
T KOG0226|consen 265 R 265 (290)
T ss_pred h
Confidence 4
|
|
| >KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-12 Score=96.70 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=69.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+.-|||.|||+.+|.++..++|.+||.|..|+|--. ...+|-|||.|++..+|++|++.| +|..+.++.+.|-+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~----k~TrGTAFVVYedi~dAk~A~dhl--sg~n~~~ryl~vly 91 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT----KETRGTAFVVYEDIFDAKKACDHL--SGYNVDNRYLVVLY 91 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCc----cCcCceEEEEehHhhhHHHHHHHh--cccccCCceEEEEe
Confidence 348999999999999999999999999999999655 344999999999999999999999 99999999999976
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 5433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-10 Score=108.51 Aligned_cols=200 Identities=17% Similarity=0.098 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
....+..+...|...|++++|++.++++++.. +.+...+..++..|...|++++|++.|++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 34566777777888888888888888877653 335667777777788888888888888877765432 4556666777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS 488 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 488 (798)
.+...|++++|.+.+++..+... ......+..+...+...|++++|...|++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 77777777777777777765421 122344555666666666666666666666654321 3445556666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 489 KALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
+|...++++... ...+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666554 23344444455555555666666666555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-09 Score=111.02 Aligned_cols=293 Identities=16% Similarity=0.136 Sum_probs=141.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ--- 413 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 413 (798)
....+...|++++|++.+++-.+. +......+...+..+.+.|+.++|..+|..++.+++. |..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 334556677777777777665543 3323455566677777777777777777777776432 33333344433311
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 414 --TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE-KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 414 --~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
..+.+...++++++...- |.......+.-.+.....+. .+..++..+...|+. .+|+.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 123555566666665542 22222222221122211222 233444444555533 3455555555544444444
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003749 491 LEVSKVMKSS----G----------IKHNM--KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (798)
Q Consensus 491 ~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 554 (798)
.+++...... + -.|+. +++..+...|...|++++|+.++++.+++.+. .+..|....+.|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 4444443321 0 01222 23333444555556666666666555554322 244555555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H----HH--HHHHHHHHhcCC
Q 003749 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV--H----TF--NALILGLVEKRQ 626 (798)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~----~~--~~li~~~~~~~~ 626 (798)
|++++|...++.....+.. |...-+-.+..+.++|++++|.+++....+.+..+.. . .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666555555555554433 3444444444555555555555555555443322111 1 11 222334555555
Q ss_pred HHHHHHHHHHHH
Q 003749 627 MEKAIEILDEMT 638 (798)
Q Consensus 627 ~~~A~~~~~~m~ 638 (798)
+..|++.|....
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-10 Score=105.49 Aligned_cols=229 Identities=13% Similarity=0.126 Sum_probs=154.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003749 475 GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM 554 (798)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 554 (798)
+.|..+|.+.|.+.+|...|+...+. .+-..||..|-..|.+..+-..|+.+|.+-++.-+ .|+.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 56777888888888888877777765 45667777777788888888888887777666422 2444444566677777
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003749 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEIL 634 (798)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 634 (798)
++.++|.++|+.+.+.... ++....++...|.-.++.+.|+..|+++...|.. +...|+.+..+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7788888888777776533 5666666666777777778888888877777765 6777777777777777777777777
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 635 DEMTLAGISPN--EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 635 ~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
.+....-..++ ...|-.|.......||+..|.+.|+..+..+.. +...++.|.-.-.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 77665432233 235556666666666666666666666655433 455666666556666666666666665554
|
|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-12 Score=142.05 Aligned_cols=78 Identities=19% Similarity=0.523 Sum_probs=74.9
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~ 232 (798)
+|||||||.++||++|+++|++||.|.+|+|.+| +.|++++|||||+|.+.++|.+|++.+ |+..++|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~l--n~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETM--NFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeeEEeeccc
Confidence 7999999999999999999999999999999999 889999999999999999999999999 9999999999999875
Q ss_pred c
Q 003749 233 G 233 (798)
Q Consensus 233 ~ 233 (798)
.
T Consensus 79 ~ 79 (562)
T TIGR01628 79 R 79 (562)
T ss_pred c
Confidence 3
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-08 Score=103.23 Aligned_cols=406 Identities=12% Similarity=0.026 Sum_probs=233.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHH
Q 003749 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP-IDIYH 440 (798)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~ 440 (798)
+..|...|..|.-++.+.|+++.+.+.|++...- .......|+.+...|...|.-..|..++++.......|+ ...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456666777777777777777777777776543 222556677777777777777777777766554422232 23333
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHCCCCC
Q 003749 441 MMMDGY-TIIGNEEKCLIVFERLKEC--GF--SPSIISYGCLINLYTKIG-----------KVSKALEVSKVMKSSGIKH 504 (798)
Q Consensus 441 ~l~~~~-~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~~ 504 (798)
.....| .+.+..++++.+-.+.... +. ......|..+.-+|...- ...++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 333333 3445666666665555541 11 112334444444443321 123555666666654422
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003749 505 NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (798)
Q Consensus 505 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 584 (798)
|..+.--+.--|+..++++.|....++..+.+..-+...|..|.-.+...+++.+|+.+.+.....-.. |-.....-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhh
Confidence 222222233345566777777777777776655556677777777777777777777777665543211 1111111122
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCHHH-H-H-HHHHH----HHhcCCHHHHHHHHHH-----------------HHH
Q 003749 585 GFARAGEMKRALEIFDMMRRSGC-IPTVHT-F-N-ALILG----LVEKRQMEKAIEILDE-----------------MTL 639 (798)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~-~-~-~li~~----~~~~~~~~~A~~~~~~-----------------m~~ 639 (798)
.-...++.++++.....+...-- .+.+.. . + .+... .....+..+|.+.... +..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 22224444444444433322100 000000 0 0 00000 0000011111111111 110
Q ss_pred CCCC--CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 640 AGIS--PN------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 640 ~~~~--p~------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
..+. ++ ...|......+.+.+..++|...+.++.... ......|......+...|.+.+|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0011 11 2345566678888899999999998887764 3467788888888899999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccc
Q 003749 712 IPRNTFVYNILIDGWARRGDVWEAAD--LMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 712 ~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
+.+..+...+..++.+.|+..-|.. ++..|.+.+. -+...|-.|...+.+.|+.+.|.+-
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHH
Confidence 5567799999999999998888887 9999998642 3688999999999999999887654
|
|
| >KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-12 Score=130.51 Aligned_cols=83 Identities=28% Similarity=0.550 Sum_probs=79.3
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+.+||||+|+++++++|..+|+..|.|.+++++.| +.||++|||||++|.+.+++.+|++.| ||..+.||+|+|.++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D-~~tG~~~G~~f~~~~~~~~~~~a~~~l--Ng~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYD-RETGKPKGFGFCEFTDEETAERAIRNL--NGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccc-ccCCCcCceeeEecCchhhHHHHHHhc--CCcccCCceEEeecc
Confidence 69999999999999999999999999999999999 999999999999999999999999999 999999999999999
Q ss_pred cccchh
Q 003749 232 DGRRLK 237 (798)
Q Consensus 232 ~~~~~~ 237 (798)
..+...
T Consensus 96 ~~~~~~ 101 (435)
T KOG0108|consen 96 SNRKNA 101 (435)
T ss_pred cccchh
Confidence 766543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.8e-09 Score=104.01 Aligned_cols=434 Identities=15% Similarity=0.120 Sum_probs=238.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGFAKMG 380 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g 380 (798)
-.++.+..||++.|+.+|-+.+... ++|-+.|..-..+|+..|++++|++--.+-++. .|+ ...|+-+..++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 4567788999999999999999986 558888999999999999999999988888875 345 567999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH------HHHHcC---CCCChhhHHHHHHHHHhcC-
Q 003749 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVR------DMEEEG---IDAPIDIYHMMMDGYTIIG- 450 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------~m~~~~---~~~~~~~~~~l~~~~~~~g- 450 (798)
++++|+..|.+.++.+. .|...+..+..++.... . +.+.|. .+...- .......|..++..+-+.-
T Consensus 85 ~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~--~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDY--A-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred cHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHH--H-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 99999999999998754 37777777877772110 0 111111 100000 0000111222221111100
Q ss_pred ------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH-cCCHH----HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 003749 451 ------NEEKCLIVFERLKECGFSPSIISYGCLINLYTK-IGKVS----KALEVSKVMKS-SGIKHNMKTYSMLINGFLK 518 (798)
Q Consensus 451 ------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~----~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~ 518 (798)
+..........+...+.. .+...-..... ..... ........+.+ .....-..-...+.++..+
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 000000000000000000 00000000000 00000 00000000000 0000011233456667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcc-------cHHHHHHHHHhcCC
Q 003749 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSR-------TFMPIIHGFARAGE 591 (798)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~ 591 (798)
..+++.+++.+...++.. -+..-++....+|...|.+.+......+..+.|.. ... .+..+..+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 788888888888777764 25555666677777777777666666555554422 111 12223335666677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003749 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTK 671 (798)
Q Consensus 592 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 671 (798)
++.++..|.+.......|+. +.+....+++++......-.+... ..-...-...+.+.|++..|+..|.+
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 78888877776543222221 222334444444444333222111 11122225566677777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 672 LRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV 751 (798)
Q Consensus 672 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 751 (798)
++..... |...|....-+|.+.|.+..|+.=.+...+.+ +.....|.--+.++....++++|++.|.+.++. .|+.
T Consensus 384 AIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~ 459 (539)
T KOG0548|consen 384 AIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSN 459 (539)
T ss_pred HHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cchh
Confidence 7777643 67777777777777777777777777776664 444455655566666666777777777777663 4554
Q ss_pred HHHHHHHHHHHH
Q 003749 752 HTYTSFINACSK 763 (798)
Q Consensus 752 ~~~~~l~~~~~~ 763 (798)
.-+..-+.-|..
T Consensus 460 ~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 460 AEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHH
Confidence 444333444433
|
|
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-12 Score=122.39 Aligned_cols=77 Identities=27% Similarity=0.500 Sum_probs=74.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
-|++|||.+++++.|+.|+..|..||+|+++.+..| ..||++|||+||||+-++.|+-|++.| ||..++||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqM--Ng~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQM--NGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccc-cccccccceEEEEEeCcHHHHHHHHHh--ccccccCccccccC
Confidence 468999999999999999999999999999999999 999999999999999999999999999 99999999999973
|
|
| >smart00362 RRM_2 RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.6e-12 Score=96.54 Aligned_cols=72 Identities=36% Similarity=0.684 Sum_probs=67.2
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+|||+|||.++++++|+++|++||.|.++++..+ + |+++|+|||+|.+.++|.+|+..+ ++..++|+.++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~-~--~~~~~~~~v~f~~~~~a~~a~~~~--~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD-T--GKSKGFAFVEFESEEDAEKAIEAL--NGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC-C--CCCCceEEEEeCCHHHHHHHHHHh--CCcEECCEEEeeC
Confidence 5899999999999999999999999999999987 3 778999999999999999999998 9999999998874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-09 Score=113.66 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-
Q 003749 436 IDIYHMMMDGYTIIGNEEKCLIVFERLKEC-----GF-SPSIISY-GCLINLYTKIGKVSKALEVSKVMKSS-----GI- 502 (798)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~-----~~- 502 (798)
..+...|...|...|+++.|..++...++. |. .+.+.+. +.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555677777777777777777766553 11 2233322 33556677777777777777766532 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 503 -KHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 503 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
..-..+++.|..+|.+.|++++|...++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 1112355555566666677666666665544
|
|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-12 Score=124.37 Aligned_cols=88 Identities=28% Similarity=0.441 Sum_probs=79.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc----ccCCeeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV----EFDGVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~----~~~~~~~~g~~ 225 (798)
...+|||.|||+++|+++|.++|++||+|.++.++.+ +.||.++|+|||.|.+...++.||.+. +..++.|+||.
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 3479999999999999999999999999999999999 999999999999999999999999876 33348899999
Q ss_pred eeeecccccchhh
Q 003749 226 LTVKLDDGRRLKN 238 (798)
Q Consensus 226 ~~v~~~~~~~~~~ 238 (798)
|+|..+-.|....
T Consensus 370 Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 370 LKVTLAVTRKEAA 382 (678)
T ss_pred EeeeeccchHHHH
Confidence 9999997775443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=122.20 Aligned_cols=280 Identities=17% Similarity=0.213 Sum_probs=167.8
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 458 VFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (798)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (798)
++-.+...|+.|+-+||..+|.-|+..|+.+.|- +|..|....+..+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445556677777777777777777777777777 7777776666667777777777766666665554
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Q 003749 538 KPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS-GCIPTVHTFNA 616 (798)
Q Consensus 538 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ 616 (798)
.|-..+|..|..+|...|++.. |+...+ -+..+...+...|.-.....++..+.-. +..||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4566777777777777777655 222221 1222334445555544444444443211 22233322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003749 617 LILGLVEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYASL-GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKS 694 (798)
Q Consensus 617 li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (798)
++......|-++.+++++..+-... ..|..+ +++-+... ..+++-..+.+...+ .++..+|..++++-...
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 2333444556666666665443221 011111 23222222 223333333333333 46777788888887788
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccccc
Q 003749 695 GRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIP 774 (798)
Q Consensus 695 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~ 774 (798)
|+.+.|..++.+|.+.|++.....|..|+-+ .++..-+..+++.|.+.|+.|+..|+.-.+-.|..+|....+-+..
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s 294 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS 294 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc
Confidence 8888888888888888877777777766655 6777777777888888888888888777777777766655544443
|
|
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-12 Score=134.04 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=72.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~v~ 229 (798)
.++|||||||.+++|++|+++|++||.|.+++|++| .+|++||||||+|.+.++|.+|++.| |+..+. |+.|.|.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D--~sG~sRGfaFV~F~~~e~A~~Ai~~l--ng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD--FSGQNRGYAFVTFCGKEEAKEAVKLL--NNYEIRPGRLLGVC 133 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC--CCCCccceEEEEeCCHHHHHHHHHHc--CCCeecCCcccccc
Confidence 369999999999999999999999999999999998 68999999999999999999999999 999985 8888887
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
.+.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 653
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=117.75 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=73.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee-ec--ceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FH--GRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~-~~--g~~~ 226 (798)
+..++|||.+|..++|.||+++|++||.|.+|.|++| |.||.++|||||.|.+.++|.+|+.+| ++.. |- ..+|
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Al--hn~ktlpG~~~pv 109 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINAL--HNQKTLPGMHHPV 109 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHh--hcccccCCCCcce
Confidence 3458999999999999999999999999999999999 999999999999999999999999998 6544 43 5678
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
.|++|+.-
T Consensus 110 qvk~Ad~E 117 (510)
T KOG0144|consen 110 QVKYADGE 117 (510)
T ss_pred eecccchh
Confidence 88888654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-09 Score=112.84 Aligned_cols=238 Identities=17% Similarity=0.178 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHC-----C--
Q 003749 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRD-----GL-KPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKE-----R-- 571 (798)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-- 571 (798)
..+...|...|...|+++.|+.+++..++. |. .+... ..+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555667777777777777777665543 21 11222 2334666777888888888888777542 1
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRS-----GCI-PT-VHTFNALILGLVEKRQMEKAIEILDEMTLA---G 641 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~ 641 (798)
..--..++..|..+|.+.|++++|...++.+.+. +.. +. ...++.++..|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1112345666677788888888888777766432 111 11 223456667788889999999988875432 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 642 ISP----NEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GL--E-LDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 642 ~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
... ...+++.|...|...|++++|.++|++++.. +- . -....++.|...|.+.+++++|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2357899999999999999999999988754 11 1 12456788888999999999998888876532
Q ss_pred ----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 711 ----K--IPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 711 ----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
| .+-...+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 22234578999999999999999999888765
|
|
| >TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=138.30 Aligned_cols=83 Identities=24% Similarity=0.434 Sum_probs=77.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+||+.++++++|+++|++||.|.+++++.| .+|+++|||||+|.+.++|.+|+..| ||..++|++|.|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d--~~g~~~g~gfV~f~~~~~A~~A~~~~--~g~~~~gk~l~V 358 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD--EKGVSRGFGFVCFSNPEEANRAVTEM--HGRMLGGKPLYV 358 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC--CCCCcCCeEEEEeCCHHHHHHHHHHh--cCCeeCCceeEE
Confidence 34568999999999999999999999999999999997 67999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++..+.
T Consensus 359 ~~a~~k~ 365 (562)
T TIGR01628 359 ALAQRKE 365 (562)
T ss_pred EeccCcH
Confidence 9997664
|
There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range. |
| >smart00360 RRM RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=94.73 Aligned_cols=71 Identities=37% Similarity=0.667 Sum_probs=66.5
Q ss_pred ecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 156 VGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 156 v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
|+|||.++++++|+++|++||.|..+.+..+ +.+++++|||||+|.+.++|.+|+..+ ++..++|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~-~~~~~~~~~a~v~f~~~~~a~~a~~~~--~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRD-KDTGKSKGFAFVEFESEEDAEKALEAL--NGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeC-CCCCCCCceEEEEeCCHHHHHHHHHHc--CCCeeCCcEEEeC
Confidence 6899999999999999999999999999987 668999999999999999999999998 9999999998873
|
|
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-11 Score=134.71 Aligned_cols=82 Identities=26% Similarity=0.467 Sum_probs=77.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
...+|||||||..+++++|+++|+.||.|..+.++++ ..+|+++|||||+|.+.++|..|+..| ||..|.|+.|.|+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l--~g~~~~~~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAAL--NGKDTGDNKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3468999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
++...
T Consensus 371 ~a~~~ 375 (509)
T TIGR01642 371 RACVG 375 (509)
T ss_pred ECccC
Confidence 98644
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=133.85 Aligned_cols=80 Identities=29% Similarity=0.529 Sum_probs=76.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++||||||+..+++++|+++|++||.|..|.++.+ ..+|+++|||||+|.+.++|.+|+..| ||..|.|+.|+|.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~~A~~~l--~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRD-PETGRSKGFGFIQFHDAEEAKEALEVM--NGFELAGRPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhc--CCcEECCEEEEEEE
Confidence 468999999999999999999999999999999998 788999999999999999999999999 99999999999999
Q ss_pred ccc
Q 003749 231 DDG 233 (798)
Q Consensus 231 ~~~ 233 (798)
+..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 863
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=110.00 Aligned_cols=80 Identities=29% Similarity=0.453 Sum_probs=75.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
-.|||-||.++++|.-|-++|+.||.|.+|+|++| ..|.+.||||||.+.+.++|..||..| ||+.+.+|.|.|.|.
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD-~ttnkCKGfgFVtMtNYdEAamAi~sL--NGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRD-FTTNKCKGFGFVTMTNYDEAAMAIASL--NGYRLGDRVLQVSFK 355 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceeeEEEEec-CCcccccceeEEEecchHHHHHHHHHh--cCccccceEEEEEEe
Confidence 38999999999999999999999999999999999 889999999999999999999999999 999999999999886
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-08 Score=103.54 Aligned_cols=413 Identities=15% Similarity=0.137 Sum_probs=230.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-C-------CCCCHHHHHHHHHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-G-------IEMSLVTYSIIVGGFA 377 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g-------~~~~~~~~~~l~~~~~ 377 (798)
|...|+.+.|.+-.+-+. +..+|..|.++|.+..+++-|.-++.-|... | ...+..+-..+.....
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 555677777766555544 3456777777777777777666666555321 0 1111133333444455
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (798)
..|.+++|+.+|++..+. ..|=..|-..|.+++|.++-+.--+.. -..+|......+...++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHH
Confidence 677777777777776543 233345666777777777654332211 13456666666666777777777
Q ss_pred HHHHHHH----------CC---------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003749 458 VFERLKE----------CG---------FSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (798)
Q Consensus 458 ~~~~~~~----------~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (798)
.|++... .. -..|...|.-....+-..|+.+.|+.+|...+. |-.+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 7665321 00 012334444445555556666666666666543 3345555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHH-----
Q 003749 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMK----- 593 (798)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----- 593 (798)
.|+.++|-++-++- -|...+..|.+.|...|++.+|...|.+... +...|..|..++.-+
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHH
Confidence 67777776665542 2556666777778777888787777766542 233333322222111
Q ss_pred ----------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHH
Q 003749 594 ----------RALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD--------EMTLA--GISPNEHTYTTIM 653 (798)
Q Consensus 594 ----------~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~--------~m~~~--~~~p~~~t~~~li 653 (798)
.|-+.|++. |. -+.-.+..|-+.|.+.+|+++-- +++.. .-..|....+...
T Consensus 1016 al~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 112222211 10 01112234555566666555421 11222 2234556666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCH----HHHHHHHHHHHH
Q 003749 654 HGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA-QKIPRNT----FVYNILIDGWAR 728 (798)
Q Consensus 654 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~ 728 (798)
+-++...++++|..++...++. ...+.. |+..++.--.++-+.|.- .+-.++. .+...+.+.|.+
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~---------~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREF---------SGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH---------HHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 7777777788888777766542 233333 333344444455555532 1112332 356778889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccc---------cccccchhhhhhhhhh
Q 003749 729 RGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRF---------SIPMLTKFYLFSFIWF 787 (798)
Q Consensus 729 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~---------~~~~~~~~~~~~~~w~ 787 (798)
.|.+..|-+-|.+.-++ ..-..++.+.|+.++.. +|..+.-.|+.++=|+
T Consensus 1158 QG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq 1216 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQ 1216 (1416)
T ss_pred ccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccc
Confidence 99999998877765432 23567888999877654 4455555788888886
|
|
| >smart00361 RRM_1 RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-11 Score=91.16 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=55.3
Q ss_pred hHHHHHHhc----ccCcceEEE-EecCCCCC--CCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 165 KHLVMEFFR----QFGPIKNVI-LIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 165 ~~~l~~~f~----~~g~v~~~~-~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+++|+++|+ +||.|.++. ++.+ +.+ |+++|||||+|.+.++|.+|+..| ||..+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~-~~~~~~~~rG~~fV~f~~~~dA~~A~~~l--~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYID-NVGYENHKRGNVYITFERSEDAARAIVDL--NGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeC-CCCCCCCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEe
Confidence 678999998 999999995 7776 555 999999999999999999999999 999999999986
|
|
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-11 Score=131.80 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=75.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++.++|||+|||..+++++|+++|++||.|.+|+++.| +.+|+++|||||+|.+.++|.+|+. + +|..+.|++|.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l--~g~~~~g~~i~v 162 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-L--TGQMLLGRPIIV 162 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-h--CCCEECCeeeEE
Confidence 45669999999999999999999999999999999999 8899999999999999999999996 6 999999999999
Q ss_pred ecccc
Q 003749 229 KLDDG 233 (798)
Q Consensus 229 ~~~~~ 233 (798)
+.+..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 87644
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-11 Score=130.37 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=71.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|+..+..|+..++|++|.|++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 468999999999999999999999999999999976 7999999999999999998754478999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+..+.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 97654
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.5e-08 Score=103.66 Aligned_cols=335 Identities=10% Similarity=0.053 Sum_probs=190.9
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
+...+-.+...|++..+++.|..+.-..-+... ..-...|..+.-.|.+.++...|+.-|+...+... -|...|..++
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLG 603 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLG 603 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHH
Confidence 455677788899999999999988433333210 01122345566668888999999999999988653 3788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG------IDAPIDIYHMMMDGYT 447 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~l~~~~~ 447 (798)
.+|.+.|++..|+++|.++...++. +...-.-.....|..|.+.+|+..+...+..- ..--..++..+...+.
T Consensus 604 eAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~ 682 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSA 682 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999998876433 33333444556788899999999888776531 1111233444444444
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCcCHHHHHHHHHHHHHcCCHH------HHHHHHH-HHHHCC------------
Q 003749 448 IIGNEEKCLIVFERLKE-------CGFSPSIISYGCLINLYTKIGKVS------KALEVSK-VMKSSG------------ 501 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~-~m~~~~------------ 501 (798)
..|-..+|..++++-++ .....|...|..+.++|.-.-..+ .-..+|. +....+
T Consensus 683 ~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~ 762 (1238)
T KOG1127|consen 683 ITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGY 762 (1238)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHH
Confidence 44544444444444332 221223344443333322111111 0011111 111111
Q ss_pred --------CCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 003749 502 --------IKHNMKTYSMLINGFLK--------LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVK 565 (798)
Q Consensus 502 --------~~~~~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 565 (798)
+..+..+|..|+..|.+ ..+...|+..+++.++..-. +..+|+.|.-+ ...|++.-|...|-
T Consensus 763 ~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 763 ECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFI 840 (1238)
T ss_pred HHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhh
Confidence 11223445555544443 12334677777776664332 56677766554 55566766666665
Q ss_pred HHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003749 566 EMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD 635 (798)
Q Consensus 566 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 635 (798)
+-...... ...+|..+...+.+..+++.|...|.+.+...+. +...|--........|+.-++..+|.
T Consensus 841 ks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 841 KSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred hhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55544333 5566666666677777777777777776665432 44444333333334444444444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-08 Score=90.17 Aligned_cols=199 Identities=15% Similarity=0.041 Sum_probs=164.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
...-|.-.|.+.|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++.+... +-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 35567778999999999999999999984 4466688999999999999999999999998864 336778899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
..|++++|...|++....-. ..-..+|.++..+..+.|+++.|.+.|++.++.. +-.......+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887532 2345688889888899999999999999998875 334566778888889999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 457 IVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
..+++....+. .+..+....|.+-...|+.+.+.++=.++...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99998888765 68888888888888999988888877777654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-07 Score=95.91 Aligned_cols=424 Identities=14% Similarity=0.056 Sum_probs=250.1
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|+..|-.++..+|. |-..|+.-..+|+..|++++|++=-.+-++.. +.-...|+.+..++.-
T Consensus 19 ~~ai~~~t~ai~l~p~---------------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSPT---------------NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFG 82 (539)
T ss_pred HHHHHHHHHHHccCCC---------------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHh
Confidence 9999999999999986 66678888899999999999998887777763 3345589999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHhc---CCCCChhhHHHHHHHHHhc
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFE------EAKER---HATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------~~~~~---~~~~~~~~~~~l~~~~~~~ 414 (798)
.|++++|+..|.+-++.. +-|...++-+..++.. +.. +.+.|. .+... ........|..++..+-+.
T Consensus 83 lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~--~~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLE--DYA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred cccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhH--HHH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 999999999999998864 2356677777777611 111 111111 11000 0000111122222111100
Q ss_pred -------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHH----HHHHHHHHHHH-CCCCcCHHHHHHHHHHH
Q 003749 415 -------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEE----KCLIVFERLKE-CGFSPSIISYGCLINLY 481 (798)
Q Consensus 415 -------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~----~A~~~~~~~~~-~~~~~~~~~~~~li~~~ 481 (798)
.+........-.+...+.. ............ .... .......++.+ ....--..-...+.+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 0001111111111000000 000000000000 0000 00000000000 00000112345677777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHcC
Q 003749 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYN-------NIIRAFCGM 554 (798)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-------~li~~~~~~ 554 (798)
.+..+++.|++.+....+.. .+...++....+|...|.+.+.+...++..+.|.. ...-|+ .+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 88888889999888888764 45666677778888888888888887777666543 122222 234466677
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003749 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEIL 634 (798)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 634 (798)
++++.++..|.+.......| +...+....++++.......-.+... ..-...-...+.+.|++..|++.|
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~---------~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTP---------DLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCH---------HHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHH
Confidence 88888999988866543332 22334445556665555444332221 111222255678889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003749 635 DEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (798)
Q Consensus 635 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (798)
.+++... +-|...|.....+|.++|.+..|++-.+..++.... ....|..-..++....++++|.+.|++..+.+ +.
T Consensus 382 teAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~ 458 (539)
T KOG0548|consen 382 TEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD-PS 458 (539)
T ss_pred HHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ch
Confidence 9988876 667788999998999999999999888888876432 44556556666777778899999999888876 33
Q ss_pred CHHHHHHHHHHHH
Q 003749 715 NTFVYNILIDGWA 727 (798)
Q Consensus 715 ~~~~~~~l~~~~~ 727 (798)
+......+.++..
T Consensus 459 ~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 459 NAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-11 Score=83.38 Aligned_cols=50 Identities=38% Similarity=0.680 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 714 RNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSK 763 (798)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 763 (798)
||..+||+||.+|++.|++++|.++|++|++.|+.||..||+.|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999988999999999999888874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-08 Score=99.64 Aligned_cols=218 Identities=14% Similarity=0.034 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
|.++..|.+++...+.+- .-....|..+...|...|++++|+..|+++++.. +.+...|+.+...|..
T Consensus 43 e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 43 EVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQ 110 (296)
T ss_pred HHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 778888888886544210 0023457778888999999999999999999875 4567889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (798)
.|++++|+..|++.++.. +-+..+|..++.++...|++++|++.|++..+.+.. +. ........+...++.++|.+.
T Consensus 111 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHH
Confidence 999999999999998864 225778888999999999999999999999887433 22 122222334466789999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--C-cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC---GF--S-PSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 424 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
|.+..... .++...+ . ..+...|+...+ ..+..+.+. .. . .....|..+...+.+.|++++|+..|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97765432 2222222 2 223334554443 344444321 00 0 12356778888888888888888888888
Q ss_pred HHCC
Q 003749 498 KSSG 501 (798)
Q Consensus 498 ~~~~ 501 (798)
.+.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 8764
|
|
| >KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-11 Score=112.83 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=79.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++...|||..|++-+++++|+-+|+.||.|.+|.|++| +.||.+-.||||+|++.++..+|.-.| +++.|+.|+|+|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD-~ktgdsLqyaFiEFen~escE~AyFKM--dNvLIDDrRIHV 313 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRD-RKTGDSLQYAFIEFENKESCEQAYFKM--DNVLIDDRRIHV 313 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEec-ccccchhheeeeeecchhhHHHHHhhh--cceeeccceEEe
Confidence 56779999999999999999999999999999999999 899999999999999999999999999 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.|+.+-
T Consensus 314 DFSQSV 319 (479)
T KOG0415|consen 314 DFSQSV 319 (479)
T ss_pred ehhhhh
Confidence 998654
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-11 Score=110.89 Aligned_cols=73 Identities=26% Similarity=0.561 Sum_probs=69.2
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.++||||||..+++.+|+.+|++||.|.+|+|+++ ||||..++...+..||..| +|..|+|..|+|+-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN---------YgFVHiEdktaaedairNL--hgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN---------YGFVHIEDKTAAEDAIRNL--HGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc---------cceEEeecccccHHHHhhc--ccceecceEEEEEec
Confidence 37999999999999999999999999999999964 9999999999999999988 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
+++.
T Consensus 72 ksKs 75 (346)
T KOG0109|consen 72 KSKS 75 (346)
T ss_pred cccC
Confidence 8883
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-08 Score=90.94 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=137.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY-SIIVGGFA 377 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~ 377 (798)
+.+.+..+.+..++++|++++..-.++. ..+....+.|..+|....++.+|-.+|+++-.. .|...-| ..-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666677788999999998888873 337777888889999999999999999998774 3444333 34566777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (798)
+.+.+.+|+.+...|.... ..-..+...-..+....+++.-+..+++++...| +..+.+.......+.|+++.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8899999999988876431 0011111111223446778888888877776433 45566666666778899999999
Q ss_pred HHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003749 458 VFERLKEC-GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (798)
Q Consensus 458 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (798)
-|+...+. |+. ....||..+ +..+.++++.|++...+++++|++
T Consensus 166 kFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 166 KFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 99888876 444 456676555 445678889999999988887754
|
|
| >PF13893 RRM_5: RNA recognition motif | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=84.43 Aligned_cols=56 Identities=29% Similarity=0.635 Sum_probs=50.7
Q ss_pred HHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 168 VMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 168 l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
|.++|++||.|+++.+..+ + +|+|||+|.+.++|.+|++.| ||..++|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~-~-----~~~a~V~f~~~~~A~~a~~~l--~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK-K-----RGFAFVEFASVEDAQKAIEQL--NGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT-S-----TTEEEEEESSHHHHHHHHHHH--TTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEEEC
Confidence 6789999999999999876 1 599999999999999999999 999999999999875
|
(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A .... |
| >TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-11 Score=125.86 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=69.6
Q ss_pred cccceeecCCCccCchHHHHHHhccc--CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..++|||+||+.++++++|+++|++| |.|++|+++ ++||||+|++.++|.+|++.| |+..|+|+.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---------rgfAFVeF~s~e~A~kAi~~l--nG~~i~Gr~I~ 300 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---------RDYAFVHFEDREDAVKAMDEL--NGKELEGSEIE 300 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---------cCeEEEEeCCHHHHHHHHHHh--CCCEECCEEEE
Confidence 34689999999999999999999999 999999876 469999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++++.
T Consensus 301 V~~Akp~~ 308 (578)
T TIGR01648 301 VTLAKPVD 308 (578)
T ss_pred EEEccCCC
Confidence 99998764
|
Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. |
| >cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=89.61 Aligned_cols=74 Identities=32% Similarity=0.672 Sum_probs=67.6
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+|||+|||.++++++|+++|+.||.|..+.+..+ +. ++++|+|||+|.+.++|..|+..+ ++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~-~~-~~~~~~~~v~f~s~~~a~~a~~~~--~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRD-KD-TKSKGFAFVEFEDEEDAEKALEAL--NGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeC-CC-CCcceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEeC
Confidence 5899999999999999999999999999999986 33 367899999999999999999998 99999999998864
|
This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). |
| >TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=123.81 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=71.6
Q ss_pred cccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++++|||+||++ .+++++|+++|++||.|.+|+++++ .+|||||+|.+.++|..|+..| ||..|.|++|+|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~------~~g~afV~f~~~~~A~~Ai~~l--ng~~l~g~~l~v 345 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN------KKETALIEMADPYQAQLALTHL--NGVKLFGKPLRV 345 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC------CCCEEEEEECCHHHHHHHHHHh--CCCEECCceEEE
Confidence 456999999998 6999999999999999999999986 2699999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.+++...
T Consensus 346 ~~s~~~~ 352 (481)
T TIGR01649 346 CPSKQQN 352 (481)
T ss_pred EEccccc
Confidence 9986653
|
Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). |
| >COG0724 RNA-binding proteins (RRM domain) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.9e-11 Score=120.88 Aligned_cols=80 Identities=33% Similarity=0.645 Sum_probs=76.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++||||||+.++++++|+++|++||.|..+.+..| +.+|+++|||||+|.+.+++..|+..+ +|..|.|++|.|..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d-~~~~~~~g~~~v~f~~~~~~~~a~~~~--~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRD-RETGKSRGFAFVEFESEESAEKAIEEL--NGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeec-cccCccCceEEEEecCHHHHHHHHHHc--CCCeECCceeEeec
Confidence 579999999999999999999999999999999999 789999999999999999999999999 99999999999999
Q ss_pred ccc
Q 003749 231 DDG 233 (798)
Q Consensus 231 ~~~ 233 (798)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 653
|
|
| >KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-11 Score=110.46 Aligned_cols=78 Identities=24% Similarity=0.507 Sum_probs=73.0
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++++||||+.+.++..+|+..|.+||+|.+++|++| |+||.|+-.++|..|++.| |++.+.|++++|
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---------y~fvh~d~~eda~~air~l--~~~~~~gk~m~v 144 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---------YAFVHFDRAEDAVEAIRGL--DNTEFQGKRMHV 144 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc---------eeEEEEeeccchHHHHhcc--cccccccceeee
Confidence 35569999999999999999999999999999999965 9999999999999999999 999999999999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
+++.+|.+.
T Consensus 145 q~stsrlrt 153 (346)
T KOG0109|consen 145 QLSTSRLRT 153 (346)
T ss_pred eeecccccc
Confidence 999998654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-08 Score=99.64 Aligned_cols=150 Identities=11% Similarity=-0.084 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 310 GDMHRARQTFENMRARG-IEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (798)
+..+.++..+.+++... ..+ ....|..+...|...|++++|+..|++.++.. +.+...|+.+...|...|++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666431 111 12346666666667777777777777776653 225666777777777777777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
..|++..+.+.. +..+|..++.++...|++++|.+.|++..+.+ |+..........+...++.++|+..|.+..
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777665332 45566666666666777777777777666653 221111111222334556666666665543
|
|
| >KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.2e-11 Score=115.03 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=74.7
Q ss_pred hhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 146 ~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
+...+...|||.||+.++|++.|+++|++||.|+.|+.++| ||||.|.+.++|.+|++.+ ||+.|+|..
T Consensus 254 d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD---------YaFVHf~eR~davkAm~~~--ngkeldG~~ 322 (506)
T KOG0117|consen 254 DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD---------YAFVHFAEREDAVKAMKET--NGKELDGSP 322 (506)
T ss_pred hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc---------eeEEeecchHHHHHHHHHh--cCceecCce
Confidence 34455678999999999999999999999999999988876 9999999999999999999 999999999
Q ss_pred eeeecccccchhh
Q 003749 226 LTVKLDDGRRLKN 238 (798)
Q Consensus 226 ~~v~~~~~~~~~~ 238 (798)
|.|.+|++.-..+
T Consensus 323 iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 323 IEVTLAKPVDKKK 335 (506)
T ss_pred EEEEecCChhhhc
Confidence 9999999875443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=81.52 Aligned_cols=50 Identities=36% Similarity=0.657 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
||..+||++|++|++.|++++|+++|++|.+.|+.||..||++++++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45666666666666666666666666666666666666666666666553
|
|
| >KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.1e-10 Score=112.47 Aligned_cols=88 Identities=34% Similarity=0.374 Sum_probs=74.8
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.+...+|||+|||.++++++|+++|++||.|+...|... ...++..+||||+|++.+++..||.+ +...++|+++.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr-~~~~~~~~fgFV~f~~~~~~~~~i~A---sp~~ig~~kl~ 360 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVR-SPGGKNPCFGFVEFENAAAVQNAIEA---SPLEIGGRKLN 360 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEe-ccCCCcCceEEEEEeecchhhhhhhc---CccccCCeeEE
Confidence 344556999999999999999999999999999888764 23455569999999999999999987 58999999999
Q ss_pred eecccccchhhH
Q 003749 228 VKLDDGRRLKNK 239 (798)
Q Consensus 228 v~~~~~~~~~~~ 239 (798)
|+..+++..+.+
T Consensus 361 Veek~~~~~g~~ 372 (419)
T KOG0116|consen 361 VEEKRPGFRGNG 372 (419)
T ss_pred EEeccccccccc
Confidence 999888765543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-05 Score=82.27 Aligned_cols=409 Identities=12% Similarity=0.111 Sum_probs=244.9
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
|..+|+.||+-+... .++++++.++++... +..+...|..-|..-....+++...++|.+.+..- .+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 778899999887666 899999999999976 45567789999999999999999999999988753 46777777776
Q ss_pred HHHhc-CCHHH----HHHHHHHHHh-cCCCC-ChhhHHHHHHH---------HHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003749 375 GFAKM-GNAEA----ADHWFEEAKE-RHATL-NAIIYGNIIYA---------QCQTRNMERAEALVRDMEEEGIDAPIDI 438 (798)
Q Consensus 375 ~~~~~-g~~~~----A~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 438 (798)
--.+. |+... -...|+-... .|..+ ....|+..+.. |.++.+.+...+++.+++..-+..-...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 44332 33322 2334444443 33221 22234444332 3344566667777777775422211222
Q ss_pred HHHH------HHH-----H--HhcCCHHHHHHHHHHHHHC--CCCcCHHH---------------HHHHHHHHHHcCCH-
Q 003749 439 YHMM------MDG-----Y--TIIGNEEKCLIVFERLKEC--GFSPSIIS---------------YGCLINLYTKIGKV- 487 (798)
Q Consensus 439 ~~~l------~~~-----~--~~~g~~~~A~~~~~~~~~~--~~~~~~~~---------------~~~li~~~~~~g~~- 487 (798)
|+.. ++. + -+...+..|..+++++... |+..+..+ |..+|.-=...+--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 3221 111 1 1233456677777776542 43322222 44444322221111
Q ss_pred -------HHHHHHHHHHH-HCCCCCCHHHHH-----HHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 488 -------SKALEVSKVMK-SSGIKHNMKTYS-----MLINGFLKLKD-------WANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 488 -------~~A~~~~~~m~-~~~~~~~~~~~~-----~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
....-++++.. -.+..|+.+... ...+.+...|+ .+++..+++..+..-...+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222 122233322111 11122333333 45566666665543222233444333
Q ss_pred HHHHHcC---CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 003749 548 IRAFCGM---GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIP-TVHTFNALILGLVE 623 (798)
Q Consensus 548 i~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 623 (798)
...-... ...+....+++++......--..+|..+++...+..-++.|..+|.++.+.+..+ ++.++++++.-||.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 3221111 1255566677766655433345677788888888888999999999998887666 67788888876664
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQSAL 701 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 701 (798)
++.+-|.++|+--..+- ..+..--...++-+...++-..+..+|++++..++.++ ..+|..+|.--..-|++..+.
T Consensus 415 -kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred -CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 56788999998766541 23334445667778888998999999999988855544 578899998888899999988
Q ss_pred HHHHHHHh
Q 003749 702 AVTKEMSA 709 (798)
Q Consensus 702 ~~~~~~~~ 709 (798)
++-+++..
T Consensus 493 ~lekR~~~ 500 (656)
T KOG1914|consen 493 KLEKRRFT 500 (656)
T ss_pred HHHHHHHH
Confidence 88877754
|
|
| >KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-11 Score=100.75 Aligned_cols=83 Identities=24% Similarity=0.439 Sum_probs=75.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEE-EEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
+.++++|||||.++++|..|.+.|+.||.+... ++.+| ..||.++|||||.|++.+.+.+|+..| ||..+..|++.
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd-~~tg~~~~~g~i~~~sfeasd~ai~s~--ngq~l~nr~it 170 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD-PDTGNPKGFGFINYASFEASDAAIGSM--NGQYLCNRPIT 170 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCccccc-ccCCCCCCCeEEechhHHHHHHHHHHh--ccchhcCCceE
Confidence 445799999999999999999999999998765 77787 889999999999999999999999999 99999999999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|.++..+
T Consensus 171 v~ya~k~ 177 (203)
T KOG0131|consen 171 VSYAFKK 177 (203)
T ss_pred EEEEEec
Confidence 9988544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-07 Score=88.25 Aligned_cols=329 Identities=12% Similarity=0.093 Sum_probs=214.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYG-NIIYAQC 412 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 412 (798)
+++++.-+.+..+++.|++++..-.++. +.+....+.|..+|.+..++..|-+.|+.+....+. ..-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHHH
Confidence 5567777788899999999999988874 237778889999999999999999999999876333 22222 2456677
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
+.+.+..|+++...|.+.. .........-.......+++..+..+.+++...| +..+.+.......+.|+++.|.+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8999999999998887631 0001111111233346788888888888876432 44555666677789999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCHH---------------HH
Q 003749 493 VSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-------------PDVV---------------LY 544 (798)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-------------~~~~---------------~~ 544 (798)
-|+...+-+.--....|+..+.. .+.++++.|+++..++++.|+. +|+. .+
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 99999875434456677766644 4678999999999999887643 1211 12
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 545 NNIIRAFCGMGNMDRAIHIVKEMQKER-HRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 545 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
|.-...+.+.|+++.|.+.+-+|.-+. ...|.+|+..+.-. --.+++.+..+-+.-+.+.+.- -..||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhh
Confidence 223334567788888888888886443 34466666554322 2234455555555555555443 45677778888899
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGI-SPNEHTYTTIMHGYA-SLGDTGKAFEYFTKLR 673 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~-~~g~~~~A~~~~~~~~ 673 (798)
+.-++.|..++.+-..... ..+...|+. ++++. -.-..++|++-++.+.
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 8888888888765322110 122333333 33332 2344566665555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-06 Score=78.04 Aligned_cols=331 Identities=12% Similarity=0.078 Sum_probs=204.9
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVT-YSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l~ 373 (798)
+..-...+.+.+...|++..|+.-|..+++.+ +.+-.++..-...|...|+-.-|+.-+.+.++. .||... ...-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34445667888888899999999888888762 223334555567788888888888888888875 456432 33445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (798)
..+.++|.++.|..-|+.++..... . |...+|.+-+....+ .......+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s--~-------------~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPS--N-------------GLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCC--c-------------chhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchh
Confidence 5677888899888888888765332 1 111111111111111 112233455566788899
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
.|++....+++.. .-|...|..-..+|...|+...|+.-++...+.. ..+...+--+-..+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999998863 3477888888889999999999988887776653 3455666667777888899888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-
Q 003749 534 RDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVH- 612 (798)
Q Consensus 534 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~- 612 (798)
+. .||.-.+...-. .+.+..+.++.|. ...+.++|.++++-.+...+....-...
T Consensus 251 Kl--dpdHK~Cf~~YK------klkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYK------KLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cc--CcchhhHHHHHH------HHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 75 334322211111 1112222222221 2234555666666665555543221112
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 613 --TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 613 --~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.+..+-.++...+++.+|+..-.+.++.. +.|..++..-..+|.-..+++.|+.-|+.+.+.+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 22333445556677777777776666542 2335666666677777777777777777777654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-07 Score=95.32 Aligned_cols=200 Identities=12% Similarity=0.034 Sum_probs=133.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGI-EPTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
..|..+...+...|+.+++...+....+... ..+. .........+...|++++|.+++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 4456666777777888887777777665421 1121 223333445677899999999999988763 335545442 22
Q ss_pred HHH----hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 003749 375 GFA----KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (798)
Q Consensus 375 ~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 450 (798)
.+. ..+..+.+.+.++... ............+..++...|++++|++.+++..+.. +.+...+..+..+|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 333 2455555555555411 1122233445566678889999999999999999875 445677888889999999
Q ss_pred CHHHHHHHHHHHHHCCC-CcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 451 NEEKCLIVFERLKECGF-SPS--IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 451 ~~~~A~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
++++|+.++++...... .++ ...|..+...+...|++++|+.+++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999998877532 122 234567888899999999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-10 Score=100.86 Aligned_cols=81 Identities=20% Similarity=0.437 Sum_probs=75.0
Q ss_pred ccceeecCCCccCchHHHHHHhccc-CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQF-GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..-+||+.+|.-+.+..+...|++| |.|..+++.++ +.||.|||||||+|++++-|.-|-+.| |++.|.|+.|.+.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRn-krTGNSKgYAFVEFEs~eVA~IaAETM--NNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRN-KRTGNSKGYAFVEFESEEVAKIAAETM--NNYLLMEHLLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecc-cccCCcCceEEEEeccHHHHHHHHHHh--hhhhhhhheeeeE
Confidence 4579999999999999999999988 78888888898 999999999999999999999999999 9999999999998
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+=.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87665
|
|
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-10 Score=103.11 Aligned_cols=81 Identities=27% Similarity=0.522 Sum_probs=74.1
Q ss_pred ccccceeecCCCccCchHHHHH----HhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 149 RQEGKIFVGNLPNWIKKHLVME----FFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~----~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
+++.+|||.||+..+..++|++ +|++||.|.+|...+ |.+.||-|||.|.+.++|..|+++| +|..+-|+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k----t~KmRGQA~VvFk~~~~As~A~r~l--~gfpFygK 80 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK----TPKMRGQAFVVFKETEAASAALRAL--QGFPFYGK 80 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC----CCCccCceEEEecChhHHHHHHHHh--cCCcccCc
Confidence 4455999999999999999988 999999999998864 5788999999999999999999999 99999999
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
+++|++|+...
T Consensus 81 ~mriqyA~s~s 91 (221)
T KOG4206|consen 81 PMRIQYAKSDS 91 (221)
T ss_pred hhheecccCcc
Confidence 99999997764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-07 Score=96.58 Aligned_cols=406 Identities=15% Similarity=0.149 Sum_probs=227.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 301 LMVNYYARRGDMHRARQTFENMRAR-GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
..|.-.++...+.+-.++-++.... |-. ....|..-.....-..++.+|..+|-+ .. .-...|.+|...
T Consensus 501 aai~dvak~r~lhd~~eiadeas~~~ggd-gt~fykvra~lail~kkfk~ae~ifle--qn-------~te~aigmy~~l 570 (1636)
T KOG3616|consen 501 AAIGDVAKARFLHDILEIADEASIEIGGD-GTDFYKVRAMLAILEKKFKEAEMIFLE--QN-------ATEEAIGMYQEL 570 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhCCC-CchHHHHHHHHHHHHhhhhHHHHHHHh--cc-------cHHHHHHHHHHH
Confidence 3444455666666777777766543 211 122232222222233567777777622 11 123456777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
.+|++|+.+-+.. |.+--...-.+.++++...|+-++|-++-.. .| . -...+..|.+.|....|.+.-
T Consensus 571 hkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk~s---dg-----d-~laaiqlyika~~p~~a~~~a 638 (1636)
T KOG3616|consen 571 HKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELKES---DG-----D-GLAAIQLYIKAGKPAKAARAA 638 (1636)
T ss_pred HhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhccc---cC-----c-cHHHHHHHHHcCCchHHHHhh
Confidence 8888887764432 2221122223344555556665555443210 01 1 123445566666555554432
Q ss_pred HHHHHCCCCcCHHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHHC---------CCCCCHHHH-HHHHHHH
Q 003749 460 ERLKECGFSPSIISYGCLIN-------------LYTKIGKVSKALEVSKVMKSS---------GIKHNMKTY-SMLINGF 516 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~-------------~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~~~-~~ll~~~ 516 (798)
..=.+ +..|......+.. .|-+..++++|++.|++--.. .++..+++. ......+
T Consensus 639 ~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl 716 (1636)
T KOG3616|consen 639 LNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHL 716 (1636)
T ss_pred cCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHH
Confidence 21111 0112222222222 233333333333333221100 011111111 1223334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
...|+++.|+..|-+. ......+.+-.....+.+|+.+++.+..+.. -...|-.+.+.|...|+++.|.
T Consensus 717 ~~~~q~daainhfiea---------~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEA---------NCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred HHHHhHHHHHHHHHHh---------hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHH
Confidence 4455566555554332 1122344555667788899999888877643 3456777888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
++|-+. ..++-.|.+|.+.|+++.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+-
T Consensus 786 ~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~--- 851 (1636)
T KOG3616|consen 786 ELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--- 851 (1636)
T ss_pred HHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence 988653 245667788999999999988876543 334556667777777788888888888775442
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTS 756 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 756 (798)
.|+ ..|.+|-+.|..++.+++.++-.-. .-..|.-.+..-|-..|++++|..-|-+.. -|..
T Consensus 852 -~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~ka 913 (1636)
T KOG3616|consen 852 -EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKA 913 (1636)
T ss_pred -Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHH
Confidence 233 3567888888888888887655421 122355667777888888888887766554 3566
Q ss_pred HHHHHHHcCCccccccc
Q 003749 757 FINACSKAGDMQVRFSI 773 (798)
Q Consensus 757 l~~~~~~~g~~~~a~~~ 773 (798)
-++.|...|.+++|.+|
T Consensus 914 avnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHhhhhhhHHHHHHH
Confidence 77788888888888777
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-07 Score=96.77 Aligned_cols=241 Identities=14% Similarity=0.154 Sum_probs=156.9
Q ss_pred CHHHHHHHHH--HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCC
Q 003749 330 TLHVYTNLIH--AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH--------ATL 399 (798)
Q Consensus 330 ~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~ 399 (798)
|..|-..+++ .|.-.|+.+.|.+-++.+. +..+|..|.+++.+..++|-|.-.+-.|.... ...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 6677777874 5788899999999887765 45789999999999999998877776664321 111
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 003749 400 NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLIN 479 (798)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 479 (798)
+...-....-...+.|.+++|+.++++..+. ..|=..|...|.+++|+++-+.--...+ ..||.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 1122223334456889999999999998874 3455778889999999988765333222 356777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003749 480 LYTKIGKVSKALEVSKVMKSSG-------------------IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPD 540 (798)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~~-------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 540 (798)
.+-..++.+.|++.|++..... -..+...|.-....+-..|+.+.|+.+|.....
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 7778888998888887643210 011223333333344445556666655554432
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (798)
Q Consensus 541 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 603 (798)
|..+++..|-.|+.++|-++-++-- |....-.|...|-..|++.+|..+|.++.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4455666666677777766655432 44455556667777777777777776543
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-10 Score=110.36 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=75.3
Q ss_pred cceeecCCCccCchHHHHHHhc-ccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+.+||.|+|+++...+|+++|+ +-|+|+.|.+..| .+||+||||.|||+++|.+++|++.| |.+.+.||.|+|+.
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~l--nk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKL--NKYEVNGRELVVKE 120 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHh--hhccccCceEEEec
Confidence 3599999999999999999996 7899999999997 78999999999999999999999999 99999999999998
Q ss_pred ccccchh
Q 003749 231 DDGRRLK 237 (798)
Q Consensus 231 ~~~~~~~ 237 (798)
.....+.
T Consensus 121 d~d~q~~ 127 (608)
T KOG4212|consen 121 DHDEQRD 127 (608)
T ss_pred cCchhhh
Confidence 8664433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-07 Score=84.81 Aligned_cols=206 Identities=14% Similarity=0.050 Sum_probs=135.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 544 YNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 544 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
..-|...|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+-|+++...... +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 344556667777777777777777766543 5566666777777777777777777777766544 56666666666777
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGI-SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA 702 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (798)
.|++++|...|++..+.-. .--..+|..+..+..+.|+.+.|.++|++.++.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777665421 122356777776777777777777777777776543 34456666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 703 VTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYT 755 (798)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 755 (798)
+++.....+ ..+..+....|..-.+.|+.+.+.+.=.++... -|...-+-
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 777776655 367777777777777777777666665555542 34444333
|
|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.6e-10 Score=107.83 Aligned_cols=90 Identities=21% Similarity=0.400 Sum_probs=84.2
Q ss_pred chhhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec
Q 003749 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 143 ~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
....+.+++..+||++||.+.-+.+|-..|..||.|++.++..| +.||-+|.|+||.|++..+|..||.+| ||..++
T Consensus 416 ~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfid-k~tnlskcfgfvSyen~~sa~~aI~am--ngfQig 492 (510)
T KOG0144|consen 416 NGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFID-KVTNLSKCFGFVSYENAQSAQNAISAM--NGFQIG 492 (510)
T ss_pred CccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEe-cccCHhhhcCcccccchhhhHHHHHHh--cchhhc
Confidence 34567788889999999999999999999999999999999999 999999999999999999999999999 999999
Q ss_pred ceeeeeecccccc
Q 003749 223 GRVLTVKLDDGRR 235 (798)
Q Consensus 223 g~~~~v~~~~~~~ 235 (798)
+++++|.+.+.+.
T Consensus 493 ~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 493 SKRLKVQLKRDRN 505 (510)
T ss_pred cccceEEeeeccC
Confidence 9999999987663
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.4e-05 Score=81.57 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=150.1
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNY--YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAY 341 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 341 (798)
..|.....+++.+.|+. .|...+.+ ..+.|+.++|..+++.....+. .|..|...+-.+|
T Consensus 26 kkal~~~~kllkk~Pn~-----------------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNA-----------------LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVY 87 (932)
T ss_pred HHHHHHHHHHHHHCCCc-----------------HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHH
Confidence 67777778888777752 23334444 4578999999999998887763 4888999999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-----
Q 003749 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN----- 416 (798)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 416 (798)
...+..++|..+|+..... .|+......+..+|.|.+.+.+-.++=-++-+. .+-+.+.+-+++..+.+...
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccc
Confidence 9999999999999999886 456888888899999998887644433333332 23355555566665543221
Q ss_pred -----hHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 417 -----MERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVF-ERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 417 -----~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
..-|.+.++.+.+.+ ..-+..-...........|++++|+.++ ....+.-..-+...-+.-++.+...+++.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 234666667766654 2122222333345556788899999998 444443333455555677888999999999
Q ss_pred HHHHHHHHHHCC
Q 003749 490 ALEVSKVMKSSG 501 (798)
Q Consensus 490 A~~~~~~m~~~~ 501 (798)
..++..++...+
T Consensus 245 l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 245 LFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhC
Confidence 999999888876
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-05 Score=84.34 Aligned_cols=226 Identities=12% Similarity=0.131 Sum_probs=159.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE 383 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 383 (798)
....+++..|+...+.+.++ .|+. .|..++++ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567889999999999987 3443 34455555 45789999999999988776655 8899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------CHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG----------NEE 453 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----------~~~ 453 (798)
+|..+|+++.... |+......+..+|.+.+++.+-.++--+|.+. .+.+...+=++++.+.+.- -..
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999998763 45777777888999999887766655555553 2333333333343333211 123
Q ss_pred HHHHHHHHHHHCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 454 KCLIVFERLKECG-FSPSIISYGCLINLYTKIGKVSKALEVS-KVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 454 ~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
-|.+.++++.+.+ ---+..-.......+...|++++|.+++ ....+.-..-+...-+.-++.+...+++.+..++..+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4566667766654 2222333334456677889999999998 3444433344556666778889999999999999999
Q ss_pred HHHcCCC
Q 003749 532 VMRDGLK 538 (798)
Q Consensus 532 ~~~~g~~ 538 (798)
+...|..
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 9887654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-07 Score=84.63 Aligned_cols=89 Identities=10% Similarity=0.081 Sum_probs=65.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003749 622 VEKRQMEKAIEILDEMTLAGISPNEH---TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (798)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~~~p~~~---t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (798)
...++|-++++-.+...+....-... .+..+-.++...|++.+|+....++++.... |+.++.--..+|.-...++
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHH
Confidence 44566777777777666553221222 3344555667788899999999999886533 5888888888999999999
Q ss_pred HHHHHHHHHHhCC
Q 003749 699 SALAVTKEMSAQK 711 (798)
Q Consensus 699 ~A~~~~~~~~~~~ 711 (798)
+|+.-|+.+.+.+
T Consensus 359 ~AI~dye~A~e~n 371 (504)
T KOG0624|consen 359 DAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998876
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-06 Score=91.72 Aligned_cols=199 Identities=8% Similarity=0.000 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGI-EMS-LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
..|..+...+...|+.+++.+.+.+..+... ..+ ..........+...|++++|.+++++..+.... +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3455566666667777777766666554321 112 222333445566788888888888888776432 4444432 22
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 003749 410 AQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG 485 (798)
Q Consensus 410 ~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 485 (798)
.+.. .+....+.+.+... .............+...+...|++++|...+++..+.... +...+..+..+|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 2222 34444444444431 1111222334445567777888888888888888776432 4566777777888888
Q ss_pred CHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 486 KVSKALEVSKVMKSSGIK-HNM--KTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~-~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
++++|...+++....... ++. ..|..+...+...|++++|+.+|++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888777764311 222 2344566777777888888888877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-10 Score=115.35 Aligned_cols=80 Identities=30% Similarity=0.599 Sum_probs=74.9
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~ 232 (798)
++|||||++++++++|+..|+.||.|+.|.+.+| ..||.+||||||+|.+.+.|++|+..| ||..|-||.|+|..-.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ar~a~e~l--ngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKD-SETGRSKGFGFITFVNKEDARKALEQL--NGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccc-cccccccCcceEEEecHHHHHHHHHHh--ccceecCceEEEEEee
Confidence 3999999999999999999999999999999998 779999999999999999999999999 9999999999997765
Q ss_pred ccc
Q 003749 233 GRR 235 (798)
Q Consensus 233 ~~~ 235 (798)
.+.
T Consensus 357 ~r~ 359 (549)
T KOG0147|consen 357 ERV 359 (549)
T ss_pred eec
Confidence 553
|
|
| >KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-10 Score=113.78 Aligned_cols=83 Identities=28% Similarity=0.510 Sum_probs=78.2
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||++||+.++.+.|.++|+.+|+|+.+.++.+ +.++.+||||||.|.=.+++++|+... ++..|.||.|+|..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~-~gs~~~RGfgfVtFam~ED~qrA~~e~--~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTN-KGSSEKRGFGFVTFAMEEDVQRALAET--EQSKFEGRILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecC-CCcccccCccceeeehHhHHHHHHHHh--hcCcccceecccccc
Confidence 59999999999999999999999999999999998 888899999999999999999999988 999999999999999
Q ss_pred cccchh
Q 003749 232 DGRRLK 237 (798)
Q Consensus 232 ~~~~~~ 237 (798)
+.|.+-
T Consensus 83 ~~R~r~ 88 (678)
T KOG0127|consen 83 KKRARS 88 (678)
T ss_pred cccccc
Confidence 877533
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.7e-06 Score=90.41 Aligned_cols=341 Identities=11% Similarity=0.114 Sum_probs=197.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
|...-...++++...+-..+-+++++++.-.+ +.-+.-.-|.|+-...+. +...+.+..+++-.. ---.+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny-------Da~~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC-------CchhH
Confidence 33344455555555555666666666555321 111222233333333332 233344444443221 11123
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (798)
...+...+-+++|..+|++..- +....+.|+. ..++.+.|.+.-++.- ....|..+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 3445555666666666665422 2333333332 3445555555544432 345677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
.+|++-|-+. .|...|.-+++...+.|.|++..+.+....+..-+|... +.||-+|++.+++.+.++++.
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--
Confidence 7777766443 255667777777778888888777776666655444433 467777777777766555442
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003749 568 QKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH 647 (798)
Q Consensus 568 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 647 (798)
-|+......+.+-|...+.++.|.-+|.. +..|..|...+...|++..|.+.-++. .+..
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 25666677777777777777777776653 345666777777777777777655443 3456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003749 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA 727 (798)
Q Consensus 648 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (798)
||-.+-.+|...+.+.-| +|...++.....-...|+.-|-..|-+++.+.+++...... ......|+-|.-.|.
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 777777777766654433 23333344455666777777878888887777777655432 234445666665555
Q ss_pred H
Q 003749 728 R 728 (798)
Q Consensus 728 ~ 728 (798)
+
T Consensus 1325 k 1325 (1666)
T KOG0985|consen 1325 K 1325 (1666)
T ss_pred h
Confidence 4
|
|
| >KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-10 Score=100.05 Aligned_cols=82 Identities=27% Similarity=0.468 Sum_probs=72.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec---ceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g~~~ 226 (798)
++++||||-|...-.|+|++.+|..||.|.+|.+.+. ..|.+|||+||.|.+..+|+.||.+| +|..-. ...|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg--~dg~sKGCAFVKf~s~~eAqaAI~aL--HgSqTmpGASSSL 93 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG--PDGNSKGCAFVKFSSHAEAQAAINAL--HGSQTMPGASSSL 93 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC--CCCCCCCceEEEeccchHHHHHHHHh--cccccCCCCccce
Confidence 5569999999999999999999999999999999985 56999999999999999999999999 887643 4567
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
.|++++..+
T Consensus 94 VVK~ADTdk 102 (371)
T KOG0146|consen 94 VVKFADTDK 102 (371)
T ss_pred EEEeccchH
Confidence 888875554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-05 Score=85.37 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=49.7
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccc
Q 003749 690 ACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQV 769 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~ 769 (798)
.|.+.++|....++.++ ...|---+...+.+++.+-|.+++....+.| ....|..++-.|...=+.|.
T Consensus 1513 lyk~n~rW~qSiel~Kk---------d~lyKDame~Aa~S~~~~lae~Ll~~F~e~g---~~ecFaa~Ly~cYdLlrpd~ 1580 (1666)
T KOG0985|consen 1513 LYKGNNRWKQSIELCKK---------DKLYKDAMETAAESRDTELAEELLQYFLEEG---KRECFAACLYTCYDLLRPDV 1580 (1666)
T ss_pred HHhccchHHHHHHHhhh---------hhHHHHHHHHHHhcCChHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhcChHH
Confidence 34455667766666532 2234444555677888888999999988876 45678888888888777777
Q ss_pred cccc
Q 003749 770 RFSI 773 (798)
Q Consensus 770 a~~~ 773 (798)
+.++
T Consensus 1581 vlEl 1584 (1666)
T KOG0985|consen 1581 VLEL 1584 (1666)
T ss_pred HHHH
Confidence 7766
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.7e-06 Score=99.10 Aligned_cols=373 Identities=9% Similarity=-0.019 Sum_probs=215.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 450 (798)
.....+...|++.+|...+..+... ..-..........+...|+++.+.+.+..+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344455666666666544433211 00011112223344556777777776665522111112222344455666788
Q ss_pred CHHHHHHHHHHHHHCCC------CcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 003749 451 NEEKCLIVFERLKECGF------SPS--IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNM----KTYSMLINGFLK 518 (798)
Q Consensus 451 ~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~ 518 (798)
+++++..++......-- .+. ......+...+...|++++|...++.........+. ...+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 88888888887754310 011 112223345567788999999988887663111121 234555666777
Q ss_pred cCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCC--C-CcccHHHHHHHH
Q 003749 519 LKDWANVFAVFEDVMRDGL-----KPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE----RHR--P-TSRTFMPIIHGF 586 (798)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~ 586 (798)
.|++++|...+++...... .....++..+...+...|++++|...+++.... +.. + ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 8999999888887764311 111234456667788889999998888776542 111 0 112233445566
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHH
Q 003749 587 ARAGEMKRALEIFDMMRRSG--CIP--TVHTFNALILGLVEKRQMEKAIEILDEMTLAGIS-PNEHTY-----TTIMHGY 656 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~t~-----~~li~~~ 656 (798)
...|++++|...+.+..... ..+ ....+..+...+...|++++|...++++...... .....+ ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 77799999988888765431 111 2333444555677889999998888877542100 011111 1122344
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHH
Q 003749 657 ASLGDTGKAFEYFTKLRNEGLELD---VFTYEALLKACCKSGRMQSALAVTKEMSAQ----KIPR-NTFVYNILIDGWAR 728 (798)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~ 728 (798)
...|+.+.|..++........... ...+..+..++...|+.++|..+++++... +... ...++..+..++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 557888888888776554221111 112345677788889999999888887653 2111 22356677788889
Q ss_pred cCCHHHHHHHHHHHHHc
Q 003749 729 RGDVWEAADLMQQMKQE 745 (798)
Q Consensus 729 ~g~~~~A~~~~~~m~~~ 745 (798)
.|+.++|...+.+..+.
T Consensus 744 ~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 744 QGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999888875
|
|
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-10 Score=110.27 Aligned_cols=86 Identities=26% Similarity=0.525 Sum_probs=78.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.+++|||+|+++++++.|++.|++||+|.++.+++| +.+|+++||+||+|++++...+++.. ..+.|+||.|.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d-~~t~rsrgFgfv~f~~~~~v~~vl~~---~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRD-PSTGRSRGFGFVTFATPEGVDAVLNA---RTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEecc-CCCCCcccccceecCCCcchheeecc---cccccCCccccce
Confidence 5679999999999999999999999999999999999 99999999999999999999988865 4788999999999
Q ss_pred cccccchhhH
Q 003749 230 LDDGRRLKNK 239 (798)
Q Consensus 230 ~~~~~~~~~~ 239 (798)
.+.++....+
T Consensus 81 ~av~r~~~~~ 90 (311)
T KOG4205|consen 81 RAVSREDQTK 90 (311)
T ss_pred eccCcccccc
Confidence 9988875543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-06 Score=102.36 Aligned_cols=371 Identities=9% Similarity=-0.002 Sum_probs=202.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTN----LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
.....+|...|++.+|...+..+ + +...... ....+...|++..+..+++.+.......+..........
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a---~---d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAA---G---DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHC---C---CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 34445556666666555433322 1 2121111 223344556777666666554221111122233444555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHAT------L--NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP----IDIYHMMM 443 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~l~ 443 (798)
+...|++++|..+++.+...-.. + .......+...+...|++++|...+++..+.-...+ ...++.+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 56778888888888776542110 0 111222234455678888888888887765311111 12345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHH
Q 003749 444 DGYTIIGNEEKCLIVFERLKEC----GF-SPSIISYGCLINLYTKIGKVSKALEVSKVMKSS----GIK--H-NMKTYSM 511 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~ 511 (798)
..+...|++++|...+.+.... |. .....++..+...+...|++++|...+.+.... +.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 6677788888888888777643 11 111234455666777888888888877766542 211 1 1223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-cccHH-----H
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRD----GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-SRTFM-----P 581 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~ 581 (798)
+...+...|++++|...+.+.... +.......+..+...+...|+.++|...+........... ...+. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 555666678888888877776542 1111223444456667778888888887777654211101 01110 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 003749 582 IIHGFARAGEMKRALEIFDMMRRSGCIPT---VHTFNALILGLVEKRQMEKAIEILDEMTLA----GISP-NEHTYTTIM 653 (798)
Q Consensus 582 li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~t~~~li 653 (798)
.+..+...|+.+.|...+........... ...+..+..++...|++++|..++++.... +... ...++..+.
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 12334456777887777665443211111 111334555677778888888887776542 2111 123555666
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 003749 654 HGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 654 ~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
.++...|+.++|...+.++.+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 77778888888888888887654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-07 Score=97.09 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=121.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
+.+.|++.+|.-+|+...+.++. +...|..|..+....++-..|+..+++..+.. +.+..+...|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34445555555555555544333 44555555555555555555555555555543 23444455555555555555555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHH-----------HHHHHcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLI-----------NLYTKIGKVSKALEVSKVM-KSSGIKHNMKTYSMLINGFLKLKDWA 523 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~ 523 (798)
+..+++++...++ |..+. ........+.+..++|-.+ ...+...|..+...|.-.|.-.|+|+
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 5555555432110 00000 0011111222333344333 33333456666677777777777788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 524 NVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMR 603 (798)
Q Consensus 524 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 603 (798)
+|...|+..+...+. |..+||.|...++...+.++|+..|.+.++..+. -++++..|.-.|...|.+++|.+.|-.++
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888877777765444 6677888887777777788888888777776543 23444445666777777777777765554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-05 Score=77.01 Aligned_cols=412 Identities=12% Similarity=0.099 Sum_probs=233.4
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
+-|..+|+.||.-+... .++++.+.++++... ++-....|..-|..-.+..+++.+..+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 66899999999988766 999999999999986 5557889999999999999999999999999876 3466777665
Q ss_pred HHHHHh-cCChH----HHHHHHHHHHH-cCCCC-ChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCC---
Q 003749 408 IYAQCQ-TRNME----RAEALVRDMEE-EGIDA-PIDIYHMMMDG---------YTIIGNEEKCLIVFERLKECGFS--- 468 (798)
Q Consensus 408 ~~~~~~-~g~~~----~A~~~~~~m~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~--- 468 (798)
+..--+ .++.. ...+.|+-..+ .|+++ +-.+|+..+.. |..+.+++..+++|++++..-+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 543332 22222 23333443333 34322 22345544432 34455777888889888754221
Q ss_pred ---cCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHHhcCC
Q 003749 469 ---PSIISYGCLINLYT-------KIGKVSKALEVSKVMKS--SGIKHNMK---------------TYSMLINGFLKLKD 521 (798)
Q Consensus 469 ---~~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~~~~~~~~---------------~~~~ll~~~~~~~~ 521 (798)
-|-..|..-|+... +...+..|.++++++.. .|+..+.. .|..+|.--..++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 12223332232221 12345667777766643 23322221 13333322111110
Q ss_pred ------H--HHHHHHHHHHHH-cCCCCCHHHH-----HHHHHHHHcCCC-------hHHHHHHHHHHHHCCCCCCcccHH
Q 003749 522 ------W--ANVFAVFEDVMR-DGLKPDVVLY-----NNIIRAFCGMGN-------MDRAIHIVKEMQKERHRPTSRTFM 580 (798)
Q Consensus 522 ------~--~~a~~~~~~~~~-~g~~~~~~~~-----~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~ 580 (798)
. ....-++++.+. .+..|+.... ...-+.+...|+ .+++..+++..+..-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011111222111 1222221110 001112222333 345555555544332221222222
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003749 581 PIIHGFA---RAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGY 656 (798)
Q Consensus 581 ~li~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~ 656 (798)
.+.+.-- .....+.....++++...-..--..+|..++..-.+..-++.|..+|.+..+.+..+ ++..+++++..|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 2221111 111245555566665543222234456667777777777888888888888776555 566677777666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 003749 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDGWARRGDVWE 734 (798)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 734 (798)
| .+|.+-|.++|+--+..- .-+...-...++-+...++-..+..+|++....++.++ ..+|+.+++-=..-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 466788888887665542 22333445666777788888888888888887754444 4588888888788888888
Q ss_pred HHHHHHHHHHc
Q 003749 735 AADLMQQMKQE 745 (798)
Q Consensus 735 A~~~~~~m~~~ 745 (798)
++++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 88887777653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-06 Score=91.15 Aligned_cols=419 Identities=18% Similarity=0.193 Sum_probs=194.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHH--------------------cCCCC
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKE--------------------EGIEM 364 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~--------------------~g~~~ 364 (798)
....|+++.|...++.+.. .|+.. .|-.+.......|++--|.++|..+-+ .|-.
T Consensus 454 aid~~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggd- 529 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGD- 529 (1636)
T ss_pred ccccCchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC-
Confidence 3466888888888876543 34443 466666555555555555444433211 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003749 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (798)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 444 (798)
....|..-.....-..++++|..+|-+-- .....|-.|....++++|+.+-+- .|.+.-...-.+.+.
T Consensus 530 gt~fykvra~lail~kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q 597 (1636)
T KOG3616|consen 530 GTDFYKVRAMLAILEKKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQ 597 (1636)
T ss_pred CchHHHHHHHHHHHHhhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHH
Confidence 11122222222222234555555443210 112234455555666666555432 222222222334445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 445 GYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN 524 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 524 (798)
++...|+-++|-++- +. ...-...|+.|.+.|..-.|.+....=.. +..|......+..++.+..-++.
T Consensus 598 ~l~dt~qd~ka~elk----~s-----dgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydk 666 (1636)
T KOG3616|consen 598 ALMDTGQDEKAAELK----ES-----DGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDK 666 (1636)
T ss_pred HHHhcCchhhhhhhc----cc-----cCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHh
Confidence 555566655554331 11 11122457778888887777664322111 12344444445555555544555
Q ss_pred HHHHHHHHHHc-------------C---------CCCCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHH
Q 003749 525 VFAVFEDVMRD-------------G---------LKPDVVLY-NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMP 581 (798)
Q Consensus 525 a~~~~~~~~~~-------------g---------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 581 (798)
|-.+|+++..- | +.-.+++. .....-+...|+++.|+..|-+. .....
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea---------~~~~k 737 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA---------NCLIK 737 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh---------hhHHH
Confidence 55555544320 0 00000000 00011112222233332222211 11112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003749 582 IIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGD 661 (798)
Q Consensus 582 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 661 (798)
.+.+..+.+.|.+|+.+++.+..... ...-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 23334445555555555555443321 12234444455555556655555554321 13334455555666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 662 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
++.|.++-.+.. |.+.....|.+-..-+-+.|++.+|.+++-.+.. |+ .-|..|-+.|..++.+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 655555544332 2233344444444445555555555555532221 22 234455666666666666554
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHHcCCccccccc-------cccchhhhhhhhhh
Q 003749 742 MKQEGVQPD--VHTYTSFINACSKAGDMQVRFSI-------PMLTKFYLFSFIWF 787 (798)
Q Consensus 742 m~~~g~~pd--~~~~~~l~~~~~~~g~~~~a~~~-------~~~~~~~~~~~~w~ 787 (798)
- .+| ..|..++..-|...|+++.|.+- .+-...|-+|-.|.
T Consensus 876 ~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~ 925 (1636)
T KOG3616|consen 876 H-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWE 925 (1636)
T ss_pred h-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHH
Confidence 3 233 35778889999999998877654 33445788888884
|
|
| >KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-09 Score=102.54 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=69.2
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+||||+|...++|.+|+++|.+||+|+.+++... +|||||+|.+.++|..|.... .|...|+|++|+|.|.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-------~~CAFv~ftTR~aAE~Aae~~-~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-------KGCAFVTFTTREAAEKAAEKS-FNKLVINGFRLKIKWG 300 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-------cccceeeehhhHHHHHHHHhh-cceeeecceEEEEEeC
Confidence 49999999999999999999999999999999986 789999999999999999885 4688899999999999
Q ss_pred cc
Q 003749 232 DG 233 (798)
Q Consensus 232 ~~ 233 (798)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 88
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-06 Score=88.62 Aligned_cols=138 Identities=12% Similarity=0.025 Sum_probs=67.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 304 NYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
..+...++.++|+.+++.+++.. +-+..+|+....++.+.| ++++++..++++++.+. -+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence 33444555566666666666552 223334554444554544 35556666555555432 2444455444444444442
Q ss_pred --HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003749 383 --EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (798)
Q Consensus 383 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 445 (798)
++++.+++++++.+.. |..+|.....++...|+++++++.++++++.+ ..+..+|+.....
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~v 185 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFV 185 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHH
Confidence 4455555555554333 45555555555555555555555555555543 2234444444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-06 Score=88.67 Aligned_cols=148 Identities=9% Similarity=0.031 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHhcCCccHHHHHHHHHhhcC---CCHhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 262 EREWHRREFRKAVETQPENWQAVVSAFERIKK---PSRREFGLMVNYYARRG-DMHRARQTFENMRARGIEPTLHVYTNL 337 (798)
Q Consensus 262 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l 337 (798)
++.+|...|+.++..+.. ...++..+...-. -+...|+....++...| ++++++..++++.+.+ ..+..+|+..
T Consensus 35 ~~~~a~~~~ra~l~~~e~-serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R 112 (320)
T PLN02789 35 EFREAMDYFRAVYASDER-SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHH
Confidence 346666666666655443 2333444333221 12334444444455555 4567777777766654 3344456655
Q ss_pred HHHHHccCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 338 IHAYAVGRDM--EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 338 l~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
..++.+.|+. ++++.+++++++.+. -|..+|+...-++.+.|+++++++.++++++.+.. |..+|+....++.+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 5555555542 556666666666542 26666776666666667777777777777666544 55555555444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-07 Score=95.78 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=167.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (798)
....+.+.|++.+|.-+|+..++.+. -+...|..|....+..++-..|+..+++..+.+.. |..+..+|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 33456678888888888888888753 37888888888888888888888888888887654 77888888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHH-----------HHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHc
Q 003749 417 MERAEALVRDMEEEGIDAPIDIYHMMM-----------DGYTIIGNEEKCLIVFERLKEC-GFSPSIISYGCLINLYTKI 484 (798)
Q Consensus 417 ~~~A~~~~~~m~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 484 (798)
-.+|++.|++.+....+ |..+. ..+.....+.+..++|.++... +...|..++..|.-.|--.
T Consensus 369 q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 88888888888765311 00000 1122223344555666666443 4446777888888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 003749 485 GKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIV 564 (798)
Q Consensus 485 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 564 (798)
|++++|++.|+.++... +-|...||.|...++...+.++|+..|.+.++..+. -+.++..|.-.|...|.+++|.+.|
T Consensus 444 ~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999998864 336678999999999999999999999999886433 2345667888899999999999888
Q ss_pred HHHHH
Q 003749 565 KEMQK 569 (798)
Q Consensus 565 ~~~~~ 569 (798)
-..+.
T Consensus 522 L~AL~ 526 (579)
T KOG1125|consen 522 LEALS 526 (579)
T ss_pred HHHHH
Confidence 76554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9e-07 Score=99.28 Aligned_cols=202 Identities=10% Similarity=0.070 Sum_probs=121.5
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEP-----TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS 370 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (798)
...|...|....+.++.++|++++++++.. +.+ -...|.++++.-...|.-+...++|+++.+. ---...|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 345666666677777777777777777653 111 1225666666666666666667777776663 11234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHh
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTI 448 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~~~ 448 (798)
.|...|.+.+++++|.++|+.|.++-- -...+|...+..+.++.+-+.|.+++.+..+.- +. .+......+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 677777777777777777777766522 355666666666666666666666666665531 11 23344444555556
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003749 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (798)
.|+.+.++.+|+.++....+ -...|+.+|++-.++|+.+.+.++|++++..++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 66666666666666654322 3455666666666666666666666666665544
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=107.00 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 003749 317 QTFENMRA 324 (798)
Q Consensus 317 ~~~~~~~~ 324 (798)
.+++.+++
T Consensus 733 ~~iqnLik 740 (1102)
T KOG1924|consen 733 SMIQNLIK 740 (1102)
T ss_pred HHHHHHHH
Confidence 33444443
|
|
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.1e-09 Score=114.24 Aligned_cols=72 Identities=22% Similarity=0.452 Sum_probs=60.2
Q ss_pred cccceeecCCCccCchHHHHHHhccc------------CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQF------------GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~------------g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
+.++|||||||+++|+++|+++|++| +.|..+.+.. .+|||||+|.+.++|..|+ .| |
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-------~kg~afVeF~~~e~A~~Al-~l--~ 243 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-------EKNFAFLEFRTVEEATFAM-AL--D 243 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-------CCCEEEEEeCCHHHHhhhh-cC--C
Confidence 34599999999999999999999975 2344444443 4899999999999999999 47 9
Q ss_pred Ceeecceeeeeecc
Q 003749 218 GVEFHGRVLTVKLD 231 (798)
Q Consensus 218 ~~~~~g~~~~v~~~ 231 (798)
|..|.|+.|+|...
T Consensus 244 g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 244 SIIYSNVFLKIRRP 257 (509)
T ss_pred CeEeeCceeEecCc
Confidence 99999999998643
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-09 Score=101.05 Aligned_cols=82 Identities=20% Similarity=0.363 Sum_probs=75.7
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+.+.-.+|||..+.++.+|+||+..|..||+|..|.+.++ ..++.+|||||+||.+..+...|+..| |-+.++|+-|
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAiasM--NlFDLGGQyL 282 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIASM--NLFDLGGQYL 282 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeecc-CCCCCccceeeEEeccccchHHHhhhc--chhhcccceE
Confidence 4455569999999999999999999999999999999999 888899999999999999999999999 9999999999
Q ss_pred eeecc
Q 003749 227 TVKLD 231 (798)
Q Consensus 227 ~v~~~ 231 (798)
+|.-+
T Consensus 283 RVGk~ 287 (544)
T KOG0124|consen 283 RVGKC 287 (544)
T ss_pred ecccc
Confidence 98544
|
|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-09 Score=107.84 Aligned_cols=80 Identities=21% Similarity=0.444 Sum_probs=72.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+...+||.||+++++..+|.++|+.||.|.+|++.+| .+| ++|| ||+|+++++|.+|+..+ ||..+.|++|.|.
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~--ng~ll~~kki~vg 148 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKL--NGMLLNGKKIYVG 148 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHh--cCcccCCCeeEEe
Confidence 3334999999999999999999999999999999997 345 8999 99999999999999999 9999999999998
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
....+.
T Consensus 149 ~~~~~~ 154 (369)
T KOG0123|consen 149 LFERKE 154 (369)
T ss_pred eccchh
Confidence 776554
|
|
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=89.14 Aligned_cols=84 Identities=24% Similarity=0.399 Sum_probs=69.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec---ceeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVLTV 228 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g~~~~v 228 (798)
++|||.+||.++...+|..+|..|-..+...+....+...-.+-+|||+|.+..+|.+|+.+| ||+.|+ +..|++
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaL--NGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNAL--NGVRFDPETGSTLHI 112 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHh--cCeeeccccCceeEe
Confidence 499999999999999999999999888877664321211112469999999999999999999 999998 889999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
++++++...
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999887544
|
|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=102.10 Aligned_cols=87 Identities=15% Similarity=0.299 Sum_probs=76.6
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..-.+++||.+|+..+.-.+|+.+|++||.|...+|+.+ -.+--.+.||||++.+.+.|.++|..| +.+.|+||.|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTN-aRsPGaRCYGfVTMSts~eAtkCI~hL--HrTELHGrmIS 478 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN-ARSPGARCYGFVTMSTSAEATKCIEHL--HRTELHGRMIS 478 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeec-CCCCCcceeEEEEecchHHHHHHHHHh--hhhhhcceeee
Confidence 345669999999999999999999999999999999987 444556889999999999999999999 99999999999
Q ss_pred eecccccchh
Q 003749 228 VKLDDGRRLK 237 (798)
Q Consensus 228 v~~~~~~~~~ 237 (798)
|+-++.-..+
T Consensus 479 VEkaKNEp~G 488 (940)
T KOG4661|consen 479 VEKAKNEPGG 488 (940)
T ss_pred eeecccCccc
Confidence 9988755433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=94.10 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=21.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 445 GYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
++...|++++|++++.+. .+.......+.+|.+.++.+.|.+.++.|.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334445555554444321 1333344444455555555555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-07 Score=91.64 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 003749 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDT-GKAFEYFT 670 (798)
Q Consensus 592 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~-~~A~~~~~ 670 (798)
+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+.+ .-+..++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444443322 22234444444444444444444444444443322 22333344444444444443 33334444
Q ss_pred HHHH
Q 003749 671 KLRN 674 (798)
Q Consensus 671 ~~~~ 674 (798)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-08 Score=103.81 Aligned_cols=80 Identities=28% Similarity=0.459 Sum_probs=69.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCC--CCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN--FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.++|||.||+++++.++++.+|++.|.|.++.|..-++. --.|.|||||+|.+.++|++|++.| +|+.|+|+.|.|
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~l--qgtvldGH~l~l 592 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKAL--QGTVLDGHKLEL 592 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHh--cCceecCceEEE
Confidence 334999999999999999999999999999988763111 1124599999999999999999999 999999999999
Q ss_pred eccc
Q 003749 229 KLDD 232 (798)
Q Consensus 229 ~~~~ 232 (798)
+++.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9987
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.5e-06 Score=92.22 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 003749 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKER-HA---TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYH 440 (798)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 440 (798)
+...|-..|..+...++.++|++++++++.. ++ .--...|.++++.....|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4556777777777777777777777776653 11 1123356666666666666666777777776642 1245566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK-HNMKTYSMLINGFLKL 519 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~ 519 (798)
.|...|.+.+++++|.++|+.|.+. +.-...+|...++.+.+.++-+.|..++.++.+.-.+ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7777777777777777777777664 2335567777777777777777777777777664211 1233344445555667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHhcCCHHHHHH
Q 003749 520 KDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS--RTFMPIIHGFARAGEMKRALE 597 (798)
Q Consensus 520 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~ 597 (798)
|+-+.+..+|+..+...++ -...|+..+++-.+.|+.+.+..+|++++..+..+.. ..|...+..-.+.|+-+.++.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 7777777777777766444 4567777777777777777777777777776644322 344444544445566555444
Q ss_pred HHHHHH
Q 003749 598 IFDMMR 603 (798)
Q Consensus 598 ~~~~~~ 603 (798)
+=.++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-05 Score=85.25 Aligned_cols=217 Identities=12% Similarity=0.156 Sum_probs=168.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003749 438 IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFL 517 (798)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 517 (798)
.-..+...+...|-...|+.+|+++. .|.-.|.+|...|+..+|..+..+-.+. +++...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34566788889999999999998764 4667788899999999998888887773 678888888888887
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 003749 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALE 597 (798)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 597 (798)
...-+++|+++++..... .-..+.......++++++.+.|+.-.+.+.- -..+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888775332 2223333334578889999888887766532 56778778888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (798)
Q Consensus 598 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 675 (798)
.|......... +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+.
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99888775433 57789999999999999999999999988876 555667777777788899999999998888754
|
|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-08 Score=105.96 Aligned_cols=79 Identities=20% Similarity=0.436 Sum_probs=73.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.+++||||.|+..+++.||.++|+.||+|.+|.++.. +|||||.+....+|.+|+.+| +.+.+.++.|+|.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-------R~cAfI~M~~RqdA~kalqkl--~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-------RGCAFIKMVRRQDAEKALQKL--SNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-------CceeEEEEeehhHHHHHHHHH--hcccccceeeEEe
Confidence 3569999999999999999999999999999999876 899999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
|+.++...
T Consensus 491 Wa~g~G~k 498 (894)
T KOG0132|consen 491 WAVGKGPK 498 (894)
T ss_pred eeccCCcc
Confidence 99776533
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-06 Score=89.72 Aligned_cols=214 Identities=11% Similarity=0.117 Sum_probs=150.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
..+...+...|-..+|+.+|+++. .|--+|.+|...|+..+|..+..+.+++ ++|...|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345566777788888888888764 4456777888888888888877777764 56777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
.-+++|.++++....+ +-..+.....+.+++.++.+.|+.-.+.+ +....+|..+..++.+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 7777777777765332 23333333445778888888887777654 445677777777778888888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
..-...... +...||.+-.+|.+.++-.+|...+++..+.+ .-+-..|..-+....+.|.+++|++.+.++..
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 777664322 46678888888888888888888888877765 34555666666666777888888877777654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.6e-06 Score=91.79 Aligned_cols=150 Identities=9% Similarity=0.076 Sum_probs=103.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC----------
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM---------- 364 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~---------- 364 (798)
+...+..|+..|...|++++|+++.+...+.. +.....|..+...+.+.++++++..+ .+... +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHH
Confidence 55678889999999999999999999887762 22333444444466677776666555 33322 111
Q ss_pred ---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003749 365 ---------SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP 435 (798)
Q Consensus 365 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 435 (798)
+...+..++.+|-+.|+.++|..+|+++++.+. -|..+.+.+...|... ++++|++++.+.+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 225677778888888888888888888888763 3778888888888887 888888888777654
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 436 IDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
|....++..+.++|.++...
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhc
Confidence 44444555556666655553
|
|
| >KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-08 Score=105.28 Aligned_cols=82 Identities=32% Similarity=0.444 Sum_probs=75.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.+.|.|.|||+..+-.+++++|..||.|++|+|..- ...+.++|||||+|-++..|.+|+++| ..+.+-||.|.++|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al--~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDAL--GSTHLYGRRLVLEW 689 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhh--cccceechhhheeh
Confidence 469999999999999999999999999999999975 567778999999999999999999999 89999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++...
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 97664
|
|
| >KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-08 Score=95.91 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=69.9
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
..+..|+|||.|||.+.|...|++-|..||.|..+.|.. .|+++| .|-|.+++.|.+|+..| ||..++||.|
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime----~GkskG--VVrF~s~edAEra~a~M--ngs~l~Gr~I 603 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME----NGKSKG--VVRFFSPEDAERACALM--NGSRLDGRNI 603 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc----cCCccc--eEEecCHHHHHHHHHHh--ccCcccCcee
Confidence 346778999999999999999999999999999999953 488887 89999999999999999 9999999999
Q ss_pred eeecc
Q 003749 227 TVKLD 231 (798)
Q Consensus 227 ~v~~~ 231 (798)
+|.++
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99763
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-06 Score=81.61 Aligned_cols=185 Identities=16% Similarity=0.090 Sum_probs=130.6
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---HH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL---HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VT 368 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~ 368 (798)
....+..++..|...|++++|+..|+++.... +.+. .++..+..+|.+.|++++|+..|+++++.... +. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHH
Confidence 45567778888999999999999999998863 2122 46778888999999999999999999876321 22 25
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 003749 369 YSIIVGGFAKM--------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYH 440 (798)
Q Consensus 369 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 440 (798)
+..+..++.+. |++++|++.|+++...... +...+..+..... .. .... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 66666677655 7888999999998876433 2223322211110 00 0000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECGF--SPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
.+...|.+.|++.+|+..|.+..+... ......+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566788999999999999999887632 123568889999999999999999998888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6e-06 Score=76.90 Aligned_cols=160 Identities=12% Similarity=0.065 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003749 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL 659 (798)
Q Consensus 580 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 659 (798)
..+-..+.-.|+-+....+......... .|....+.++....+.|++.+|+..|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4444555666666666666665443322 255566667777777788888888887777654 66777788887788888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 660 GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 660 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (798)
|+.++|..-|.+..+.... +...++.|...|.-.|+++.|..++....... ..|..+-..|.-+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888777777776543 55666777777777788888888777777654 346667777777777778887777776
Q ss_pred HHHH
Q 003749 740 QQMK 743 (798)
Q Consensus 740 ~~m~ 743 (798)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5543
|
|
| >KOG0533 consensus RRM motif-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-08 Score=90.28 Aligned_cols=88 Identities=23% Similarity=0.362 Sum_probs=79.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|+|.||++.|++++|+++|..||.++.+-+..| .+|++.|.|-|.|...++|.+|++.+ ||+.++|+++++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~--~~G~s~Gta~v~~~r~~DA~~avk~~--~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD--RAGRSLGTADVSFNRRDDAERAVKKY--NGVALDGRPMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccC--CCCCCCccceeeecchHhHHHHHHHh--cCcccCCceeeeEEe
Confidence 58999999999999999999999998888888775 67999999999999999999999999 999999999999988
Q ss_pred cccchhhHHHHh
Q 003749 232 DGRRLKNKAEVR 243 (798)
Q Consensus 232 ~~~~~~~~~~~~ 243 (798)
.+.....+..+.
T Consensus 160 ~~~~~~~r~~~~ 171 (243)
T KOG0533|consen 160 SSPSQSKRLPVG 171 (243)
T ss_pred cCcccccccccc
Confidence 777766555543
|
|
| >KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.2e-08 Score=92.39 Aligned_cols=82 Identities=23% Similarity=0.341 Sum_probs=76.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
-+...+||||+.+.++.++++..|+.||.|..+.+..| +.+|.+|||+||+|.+.+.+..++. | ||..|.|+.+.|
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d-~~~~~~k~~~yvef~~~~~~~~ay~-l--~gs~i~~~~i~v 174 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKD-KFRGHPKGFAYVEFSSYELVEEAYK-L--DGSEIPGPAIEV 174 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeecc-ccCCCcceeEEEecccHhhhHHHhh-c--CCccccccccee
Confidence 44569999999999999999999999999999999999 8899999999999999999999998 7 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.+.+-+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 877555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-05 Score=88.32 Aligned_cols=239 Identities=14% Similarity=0.101 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+-.|+..|...+++++|.++.+..++.. +-....|..++..+...++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 55578899999999999999999999887752 22455566666677777776665544 2333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
......++.-+..+...|.+. .-+..++..|+.+|-+.|+.++|..+|+++++.... |..+.|.+...|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 344444554444445555553 234568888999999999999999999999998744 888999999999999 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003749 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (798)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 569 (798)
|++++.+.... |...+++..+..+|.++....+. |...+..+++.....-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------------- 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------------- 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------------
Confidence 99999888763 55667788888888887775433 2222222222211110
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 570 ERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (798)
Q Consensus 570 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 622 (798)
+..--..++..+...|-..++|+++..+++.+.+.... |.....-++.+|.
T Consensus 218 -~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112233444555566666677777777777665443 4445555555554
|
|
| >KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-08 Score=87.63 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=71.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||+|+...|+|+.|.++|-+.|+|..|.|..+ ..++.| ||||+|.++-++.-|+..+ ||..+.++.++|++.
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~--~d~~~k-Fa~v~f~~E~sv~~a~~L~--ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG--QDQEQK-FAYVFFPNENSVQLAGQLE--NGDDLEEDEEQRTLR 84 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC--ccCCCc-eeeeecccccchhhhhhhc--ccchhccchhhcccc
Confidence 48999999999999999999999999999999876 346667 9999999999999999998 999999999999876
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
.+.
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 554
|
|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-08 Score=89.55 Aligned_cols=73 Identities=32% Similarity=0.663 Sum_probs=67.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.++|||+|++.+.+.+|+.+|.+||.+.++.+. .||+||+|++..+|..|+..+ |+..|.|..+.|+++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---------~gf~fv~fed~rda~Dav~~l--~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---------NGFGFVEFEDPRDADDAVHDL--DGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---------cccceeccCchhhhhcccchh--cCceecceeeeeecc
Confidence 379999999999999999999999999999885 579999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
+...
T Consensus 71 r~~~ 74 (216)
T KOG0106|consen 71 RGKR 74 (216)
T ss_pred cccc
Confidence 8653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-05 Score=79.49 Aligned_cols=187 Identities=11% Similarity=-0.051 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hh
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA--II 403 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 403 (798)
.....+..+...+.+.|++++|...|+++++.. +.+ ..++..++.+|.+.|++++|+..|+++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356677888889999999999999999998863 212 246788899999999999999999999887543222 25
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 003749 404 YGNIIYAQCQT--------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYG 475 (798)
Q Consensus 404 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 475 (798)
+..+..++.+. |+.++|.+.|+++.+.. +.+...+..+..... .. ..+ .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHH--------HHHHH
Confidence 66666666654 77889999999988764 222223322221111 00 000 01122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 476 CLINLYTKIGKVSKALEVSKVMKSSGI--KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.+...|.+.|++++|+..+....+... ......+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566789999999999999999987632 223578889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.1e-06 Score=76.69 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=86.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCC--hHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC-CKSGR--MQSA 700 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 700 (798)
.++.++++..++..++.+ +.+...|..+...|...|++++|...|+++...... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 456667777777766654 556777777777888888888888888887776644 666777777653 56666 4788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 701 LAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
..++++..+.+ +.+...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888887766 556777777888888888888888888887765
|
|
| >KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=96.76 Aligned_cols=74 Identities=15% Similarity=0.424 Sum_probs=69.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
..|||| +++|+.+|.+.|+.+|+|.++++.+| . | +-|||||.|.++++|.+|+..+ |...++|+++++-|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d-~-t--slgy~yvnf~~~~da~~A~~~~--n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD-A-T--SLGYAYVNFQQPADAERALDTM--NFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeec-C-C--ccceEEEecCCHHHHHHHHHHc--CCcccCCcEEEeehh
Confidence 479999 99999999999999999999999998 4 4 9999999999999999999999 999999999999988
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
...
T Consensus 73 ~rd 75 (369)
T KOG0123|consen 73 QRD 75 (369)
T ss_pred ccC
Confidence 444
|
|
| >KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.6e-08 Score=94.54 Aligned_cols=84 Identities=26% Similarity=0.489 Sum_probs=76.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
...+||||+|+.+++++++++.|.+||.|..+.++.| +.+.+++||+||.|.+.+++.+++.. .-+.|.|+.+.|+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d-~~~~~~rgFgfv~~~~e~sVdkv~~~---~f~~~~gk~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYD-KTTSRPRGFGFVTFDSEDSVDKVTLQ---KFHDFNGKKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeec-ccccccccceeeEeccccccceeccc---ceeeecCceeeEe
Confidence 3458999999999999999999999999999999999 89999999999999999999999864 5888999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
.|.++..-
T Consensus 172 rA~pk~~~ 179 (311)
T KOG4205|consen 172 RAIPKEVM 179 (311)
T ss_pred eccchhhc
Confidence 99888644
|
|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=89.18 Aligned_cols=80 Identities=25% Similarity=0.293 Sum_probs=73.0
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcce--------EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
..++.|||.|||.++|.+++.++|++||-|. .|++.++ ..|+.||=|.|.|-..+++.-|+..| ++..
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd--~~G~lKGDaLc~y~K~ESVeLA~~il--De~~ 207 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD--NQGKLKGDALCCYIKRESVELAIKIL--DEDE 207 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec--CCCCccCceEEEeecccHHHHHHHHh--Cccc
Confidence 4456899999999999999999999999986 5888887 45999999999999999999999999 9999
Q ss_pred ecceeeeeeccc
Q 003749 221 FHGRVLTVKLDD 232 (798)
Q Consensus 221 ~~g~~~~v~~~~ 232 (798)
+.|+.|+|+.|+
T Consensus 208 ~rg~~~rVerAk 219 (382)
T KOG1548|consen 208 LRGKKLRVERAK 219 (382)
T ss_pred ccCcEEEEehhh
Confidence 999999998873
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-05 Score=73.06 Aligned_cols=125 Identities=10% Similarity=0.041 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hHHH
Q 003749 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY-ASLGD--TGKA 665 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~-~~~g~--~~~A 665 (798)
.++.+++...++...+.+.. +...|..|...|...|++++|...|++..+.. ..+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666655443 66667777667777777777777777666653 33555566666543 45555 4677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 003749 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTF 717 (798)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (798)
.++++++++.+.. +...+..+..++.+.|++++|...|+++.+.. +++..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 7777777766544 56666677777777777777777777776654 34433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-05 Score=73.10 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
..+-+.+...|+-+.+..+........ ..|....+..++...+.|++.+|+..|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344455556666666666655544331 3355555567777777777777777777776653 44677777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
|++++|..-|.+..+.... +....+++...|.-.|+++.|..++......+ .-+..+-..|.......|++++|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777665322 55566666666667777777777776666653 335555566666666666666666655
Q ss_pred HHH
Q 003749 460 ERL 462 (798)
Q Consensus 460 ~~~ 462 (798)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=70.62 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=77.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----C
Q 003749 585 GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL----G 660 (798)
Q Consensus 585 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~----g 660 (798)
.|.+.+++++|++...... +......=+..+.+..+++-|.+.+++|.+. .+..|.+.|..++.+. +
T Consensus 117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 4556666666665554411 1112222223344555666666666666543 2445555555554432 3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHH
Q 003749 661 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWE-AADLM 739 (798)
Q Consensus 661 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~ 739 (798)
.+.+|.-+|++|.+. ..|+..+.+....++...||+++|..+++++.... ..+..+...++-.-...|.-.+ ..+.+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 456666666666543 34566666666666666666666666666666554 3455555555544444553322 33444
Q ss_pred HHHHH
Q 003749 740 QQMKQ 744 (798)
Q Consensus 740 ~~m~~ 744 (798)
.+++.
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 44443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-07 Score=58.40 Aligned_cols=32 Identities=34% Similarity=0.663 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (798)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (798)
|+.||..||++||.+||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00014 Score=67.82 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 003749 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (798)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 570 (798)
+.+|.-+|++|.+. ..|+..+.+.+..++...|++++|..+++.....
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44444444444332 2233444444444444444444444444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=71.67 Aligned_cols=94 Identities=10% Similarity=-0.123 Sum_probs=51.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003749 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (798)
..+...+...|++++|+..|+..+... +.+..+|..++.++.+.|++++|+..|+++...+. .+...+..+..++...
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 344455555566666666665555543 22455555555555556666666666665555432 2455555555555555
Q ss_pred CChHHHHHHHHHHHHc
Q 003749 415 RNMERAEALVRDMEEE 430 (798)
Q Consensus 415 g~~~~A~~~~~~m~~~ 430 (798)
|+.++|...|+..++.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.4e-05 Score=83.93 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
..+...+-.|.......|++++|..+++...+.. +-+...+..++..+.+.+++++|+..+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3345556666666666666666666666666642 123445556666666666666666666666655332 45555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
..++.+.|++++|.++|+++...+ +-+..++..+...+...|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666666532 334556666666666666666666666666553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=70.30 Aligned_cols=91 Identities=12% Similarity=-0.133 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003749 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (798)
Q Consensus 652 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (798)
+...+...|++++|...|..++..... +...|..+..++.+.|++++|...|+++...+ +.+...+..++.++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 344444455555555555555444322 44444555555555555555555555555443 3444445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 003749 732 VWEAADLMQQMKQ 744 (798)
Q Consensus 732 ~~~A~~~~~~m~~ 744 (798)
+++|+..|++.++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-07 Score=57.58 Aligned_cols=32 Identities=38% Similarity=0.616 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 711 KIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 711 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666665
|
|
| >KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.3e-07 Score=93.14 Aligned_cols=86 Identities=20% Similarity=0.366 Sum_probs=73.9
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCC--CCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN--FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
-+..+++|||||++.++++.|-..|+.||+|..|+|.--+.. ..+.+.||||.|-+..++.+|++.| +|..+.++.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~l--qg~iv~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKEL--QGIIVMEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHh--cceeeeeee
Confidence 345679999999999999999999999999999999864222 2233679999999999999999999 999999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
+++.|.+.-.
T Consensus 249 ~K~gWgk~V~ 258 (877)
T KOG0151|consen 249 MKLGWGKAVP 258 (877)
T ss_pred eeeccccccc
Confidence 9999986543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00014 Score=81.18 Aligned_cols=181 Identities=10% Similarity=0.097 Sum_probs=125.9
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 575 TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMH 654 (798)
Q Consensus 575 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 654 (798)
+...+..|.....+.|.+++|+.+++.+.+.... +......++..+.+.+++++|+..+++..... .-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 5677777888888888888888888888876443 56667777788888888888888888887764 345566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003749 655 GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWE 734 (798)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 734 (798)
++.+.|++++|..+|+++...+. -+..++..+..++.+.|+.++|...|++..+.. .+....|+.++. +...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~ 234 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNA 234 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHH
Confidence 88888888888888888887443 257788888888888888888888888887654 344455554443 2333
Q ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcC
Q 003749 735 AADLMQQMKQE----GVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 735 A~~~~~~m~~~----g~~pd~~~~~~l~~~~~~~g 765 (798)
-..+++++.-. |..-......+.|.-+.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 34455554322 22233445666666665544
|
|
| >KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-07 Score=92.09 Aligned_cols=69 Identities=23% Similarity=0.438 Sum_probs=63.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.++|+|-|||..|++++|+++|+.||+|++|+... ..+|..||+|-|.-+|++|+++| |+..+.|+.++
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~------~~~~~~~v~FyDvR~A~~Alk~l--~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP------NKRGIVFVEFYDVRDAERALKAL--NRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc------ccCceEEEEEeehHhHHHHHHHH--HHHHhhhhhhc
Confidence 34999999999999999999999999999975543 34899999999999999999999 99999999988
|
|
| >KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-05 Score=77.22 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=12.0
Q ss_pred ecCCCccCchHHHHHHhcccCcceEE
Q 003749 156 VGNLPNWIKKHLVMEFFRQFGPIKNV 181 (798)
Q Consensus 156 v~nl~~~~~~~~l~~~f~~~g~v~~~ 181 (798)
...|+..-...+|..-..+-|..+.|
T Consensus 486 ~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 486 TTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred eccCcCcccHHHHHHHHHhccccccc
Confidence 33444333444554444454555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00025 Score=72.19 Aligned_cols=120 Identities=9% Similarity=-0.002 Sum_probs=65.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.+...|++++|+..++.++.. .+-|.+.+.....++.+.++..+|.+.++++.... +.....+..+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 344555666666666655544 22245555555555666666666666666665542 1124445555566666666666
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
|+.++++..... +-|...|..|..+|...|+..++.....++
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666665555442 225556666666666666666555555444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.8e-05 Score=67.82 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (798)
......+...+...|++++|.+.|+++...+.. +...+..+..+|.+.|++++|..+++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 344555666677777777777777777766533 66677777777777777888887777776655 5566677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFI 758 (798)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~ 758 (798)
|...|++++|+..|++..+. .|+...+..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 125 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEYSELK 125 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 77788888888888777763 45554444333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00034 Score=71.27 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=48.8
Q ss_pred HcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 552 CGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAI 631 (798)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 631 (798)
...|.+++|+..++.++..... |...+....+.+.+.++.++|.+.++++...... .....-.+..+|.+.|+..+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHH
Confidence 3444455555555544443221 3333333344444445555555555444443211 1333334444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003749 632 EILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (798)
Q Consensus 632 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 666 (798)
.++++..... +-|...|..|..+|...|+..++.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 4444444332 334444444444444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00068 Score=62.89 Aligned_cols=185 Identities=13% Similarity=0.094 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 312 MHRARQTFENMRAR---G-IEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (798)
Q Consensus 312 ~~~A~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (798)
.++.++++..+... | ..++.. .|-.++-+....|+.+-|..+++.+..+ ++-+..+-..-...+--.|++++|+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHH
Confidence 45555555555432 2 333443 3455666667778888888888888776 4333333333333344568888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003749 387 HWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (798)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (798)
++|+.+.+.+ +.|..++-.-+.+.-..|+--+|++.+.+..+. +..|...|..+...|...|++++|.-.++++.-..
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 8888888876 446777777666777777777887777777765 46678888888888888888888888888887643
Q ss_pred CCcCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC
Q 003749 467 FSPSIISYGCLINLYTKIG---KVSKALEVSKVMKSS 500 (798)
Q Consensus 467 ~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 500 (798)
. -+...+..+...+.-.| +.+.+..+|.+..+.
T Consensus 185 P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 P-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2 14444555555443333 456677777777765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00074 Score=71.10 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=148.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 363 EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER-HATL--------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID 433 (798)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 433 (798)
.|....|..|.......-.++.|...|-+.... |++. +...-. ..+-.--|+|++|++++-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhh--
Confidence 367788888888777777777777777655321 1110 000111 112223488999999998887764
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003749 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTY 509 (798)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 509 (798)
..+..+.+.|++-....++.. -|-..| ...|+.+...++....+++|.++|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 245667777877765555432 211111 357888888888888899988888765421
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 003749 510 SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589 (798)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 589 (798)
...+.+|.+..++++...+...+.+ +....-.+..++...|.-++|.+.|-+... . ...+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHH
Confidence 2356777777777777666655433 556677888999999999999887754321 1 2356678888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 590 GEMKRALEIFDMMRRSGCIPTVHTF--------------NALILGLVEKRQMEKAIEILDEMTL 639 (798)
Q Consensus 590 ~~~~~a~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~~~~~~A~~~~~~m~~ 639 (798)
++|.+|.++-+...- |.+.+. ..-|..+.+.|+.-+|.+++.+|.+
T Consensus 892 nQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 888888887665321 122221 1123445566666677777777754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-05 Score=67.46 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=71.3
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
......+...+...|++++|++.|+.+...+ ..+...|..+...|.+.|++++|..+|++.++.+ +.+..++..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444556677777788888888888877764 4466677777777777788888888887777654 3356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 003749 376 FAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~ 396 (798)
|...|++++|+..|+...+.+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc
Confidence 778888888888887777653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0034 Score=58.45 Aligned_cols=163 Identities=11% Similarity=0.097 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003749 474 YGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG 553 (798)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 553 (798)
|..++-+....|+.+.|...++.+...- +-+..+-..-...+-..|++++|+++|+.+++.++. |.+++-.-+.+.-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHH
Confidence 4444455555666666666666665542 212222222222233456666666666666665433 55555555555555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 003749 554 MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKR---QMEKA 630 (798)
Q Consensus 554 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~A 630 (798)
.|+.-+|++-+.+..+.-. .|...|.-+...|...|++++|.-.++++.-..+. +...+..+.+.+.-.| +++.|
T Consensus 133 ~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555555555555554432 25556666666666666666666666655543221 3333333433332222 34445
Q ss_pred HHHHHHHHHC
Q 003749 631 IEILDEMTLA 640 (798)
Q Consensus 631 ~~~~~~m~~~ 640 (798)
.++|.+.++.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 5555555443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0018 Score=64.49 Aligned_cols=158 Identities=9% Similarity=0.042 Sum_probs=78.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHH
Q 003749 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLIN--GFLKLKDWANVFAVFEDVMRDGLKPD-----------VVLYN 545 (798)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~-----------~~~~~ 545 (798)
.++...|++++|.++-..+.+.+ ....+..+++ ++.-..+.+.+...|.+.++.++... ...+.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 34555566666665555554432 1112222222 22334555666666655554432110 00111
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 546 NIIRAFCGMGNMDRAIHIVKEMQKERH---RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (798)
Q Consensus 546 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 622 (798)
.-.....+.|++.+|.+.|.+.+...+ .++...|........+.|+.++|+.-.++..+.+.. -+..+..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHH
Confidence 222334567777777777777765532 233344444455566677777777777776653110 1112222223455
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 003749 623 EKRQMEKAIEILDEMTLA 640 (798)
Q Consensus 623 ~~~~~~~A~~~~~~m~~~ 640 (798)
..++|++|.+-|+...+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 566777777777765544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00053 Score=68.96 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 003749 303 VNYYARRGDMHRARQTFENMRA 324 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~ 324 (798)
.+.|-..|++++|.+.|.+...
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHH
Confidence 4556666777777777766554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.018 Score=58.35 Aligned_cols=434 Identities=11% Similarity=0.097 Sum_probs=219.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHh
Q 003749 307 ARRGDMHRARQTFENMRARGIEPT------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG--GFAK 378 (798)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~--~~~~ 378 (798)
-+.+++.+|.++|.+..+.- ..+ ....+.+|++|.. .+++.....+.++.+.- + ...|..+.. .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 35677888888888877652 222 2234566666654 34555555555554431 1 122333333 3446
Q ss_pred cCCHHHHHHHHHHHHhc--CCCC------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCChhhHH
Q 003749 379 MGNAEAADHWFEEAKER--HATL------------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI----DAPIDIYH 440 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~ 440 (798)
.+++.+|++.|...... +..+ |...-+..+..+.+.|++.++..++++++..=+ ..+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 77788888877766544 2111 111222345566788888888888877766433 36777777
Q ss_pred HHHHHHHhcC---------------CHHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 003749 441 MMMDGYTIIG---------------NEEKCLIVFERLKEC------GFSPSIISYGCLINLYTKI--GKVSKALEVSKVM 497 (798)
Q Consensus 441 ~l~~~~~~~g---------------~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m 497 (798)
.++-++.+.= .++.++-+..+|... .+-|.......++....-. .+..--.++++..
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 7555543311 011111111222111 0111111111111111111 1111223333333
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 003749 498 KSSGIKHNMK-TYSMLINGFLKLKDWANVFAVFEDVMRDGLK----PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH 572 (798)
Q Consensus 498 ~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 572 (798)
...-+.|+.. +...|+..+.+ +.+++..+.+.+....++ --..++..++....+.++..+|.+.+.-+.....
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3333344322 33334444433 455555555444332111 1234677778888888888888888877765533
Q ss_pred CCCc-----ccHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHH
Q 003749 573 RPTS-----RTFMPIIHGFAR----AGEMKRALEIFDMMRRSGCIPTVHTFNALI---LGLVEKRQ-MEKAIEILDEMTL 639 (798)
Q Consensus 573 ~~~~-----~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li---~~~~~~~~-~~~A~~~~~~m~~ 639 (798)
.... .+-..+-+..+. .-+...-+.+|..+...++. ......-|+ .-+.+.|+ -++|+++++....
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 2110 011112222221 11233444555555544332 111222222 23555665 7788888888775
Q ss_pred CCCCCCHHHHHHHH----HHHHhc---CChHHHHHHHHHHHHcCCCC----CHHHHHHHHHH--HHHcCChHHHHHHHHH
Q 003749 640 AGISPNEHTYTTIM----HGYASL---GDTGKAFEYFTKLRNEGLEL----DVFTYEALLKA--CCKSGRMQSALAVTKE 706 (798)
Q Consensus 640 ~~~~p~~~t~~~li----~~~~~~---g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 706 (798)
-. .-|...-|.+. .+|... ..+.+-+++-+-+.+.|+.+ +...-|.|.++ +...|++.++.-+-.-
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 32 22333222222 233221 22344444444445666653 34455666554 4567888888776655
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 707 MSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTS 756 (798)
Q Consensus 707 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 756 (798)
+.+ +.|+..+|..++-++....++++|..++..+ .|+..+++.
T Consensus 488 L~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 488 LTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 555 4689999999999999999999999998875 455555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00012 Score=75.52 Aligned_cols=123 Identities=13% Similarity=0.199 Sum_probs=72.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
-..|++.+...++++.|+++|+++.+.. |+ ....++..+...++-.+|++++++..... +.+..........|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3444555555667777777777776652 22 34456666666666667777776666542 2244445455555666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (798)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (798)
.++.+.|+++.+++.+.. +.+..+|..|+.+|...|+++.|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 666666666666666652 334456666666666666666666555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0019 Score=64.21 Aligned_cols=274 Identities=14% Similarity=0.019 Sum_probs=134.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.+.+..++.+|+..+..+++.... ++.-|..-+..+...+++++|.--.+.-++.. +-....+....+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 445556666666666666665433 34555555556666666666665554444332 1112233334444444444445
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI-KHNMKTYSMLI-NGFLKLKDWANVFAVFEDV 532 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~ 532 (798)
|.+.|+ |...| ....++..++....... .|...+|..|- .++.-.+++++|..+--.+
T Consensus 136 A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 444444 11111 11222333333322211 23344444443 3455678888888887777
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCccc-------------HHHHHHHHHhcCCHHHHHHHH
Q 003749 533 MRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRT-------------FMPIIHGFARAGEMKRALEIF 599 (798)
Q Consensus 533 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~~~~~~a~~~~ 599 (798)
++.... +......-..++.-.++.+.|...|++.+..+. +-.. +..-.+-..+.|.+..|.+.|
T Consensus 196 lkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 196 LKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred Hhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 765322 222222223345567788888888888776542 1111 111112234556666666666
Q ss_pred HHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 600 DMMRRSG---CIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN-EHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (798)
Q Consensus 600 ~~~~~~~---~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 675 (798)
.+.+... ..++...|........+.|+..+|+.--++..+.+ +. ...|..-..++...++|++|.+-|++..+.
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6665432 22334445445555556666666666555554321 10 112222223444455666666666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=74.99 Aligned_cols=127 Identities=14% Similarity=0.096 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
+.-..|+..+...++++.|+++|+++.+. .|++ ...+++.+...++-.+|++++++.++.. +.+..........+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44556777788889999999999999998 3554 4468888888899999999999999763 45788888889999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
.+.++++.|+++.+++.... +.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999873 33677999999999999999999999987764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=69.85 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=55.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
-..+|||.||..+++|++|+.+|+.|..+..++|.. ..|. ..+|++|++.+.|..|+..| +|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~---~~g~--~vaf~~~~~~~~at~am~~l--qg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA---RGGM--PVAFADFEEIEQATDAMNHL--QGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec---CCCc--ceEeecHHHHHHHHHHHHHh--hcceec
Confidence 344899999999999999999999998888777753 2232 48999999999999999988 877664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.021 Score=57.82 Aligned_cols=431 Identities=13% Similarity=0.136 Sum_probs=223.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--H
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA--Y 341 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~ 341 (798)
.+|.++|-++.+.-..+- ..|. ....-+.++++|... +.+.-...+..+.+. .+ ...|-.+..+ +
T Consensus 23 ~esEkifskI~~e~~~~~----f~lk-----eEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 23 QESEKIFSKIYDEKESSP----FLLK-----EEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred hHHHHHHHHHHHHhhcch----HHHH-----HHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 888999988876543210 0010 011234567777544 344444444444443 12 1223333322 3
Q ss_pred HccCChHHHHHHHHHHHHc--CCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCChhh
Q 003749 342 AVGRDMEEALSCVRKMKEE--GIE------------MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH----ATLNAII 403 (798)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~--g~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ 403 (798)
.+.+.+.+|++.+..-.++ +.. .|.+.-+..+.++.+.|++.+++.+++++..+- ..++..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4667777777776554433 111 133334566777888888888888877776543 3477778
Q ss_pred HHHHHHHHHhcCC---------------hHHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcC--CHHHHHHHHH
Q 003749 404 YGNIIYAQCQTRN---------------MERAEALVRDMEEE------GIDAPIDIYHMMMDGYTIIG--NEEKCLIVFE 460 (798)
Q Consensus 404 ~~~l~~~~~~~g~---------------~~~A~~~~~~m~~~------~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~ 460 (798)
|+.++..+.+.-- ++.+.-..++|... .+.|......+++....-.. +..--..++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 8775555443211 12222222222221 12233333333333322111 1112223333
Q ss_pred HHHHCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 461 RLKECGFSPSII-SYGCLINLYTKIGKVSKALEVSKVMKSSGIK----HNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 461 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.+...-+.|+.. +...|+....+ +.+++..+.+.+....+. --..+|..++....+.++...|.+.+..+...
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333333444422 22233333333 445555554444332111 12456777888888889988888888776654
Q ss_pred CCCCCHHHH-------HHHHHHHHcC----CChHHHHHHHHHHHHCCCCCCcc-c---HHHHHHHHHhcCC-HHHHHHHH
Q 003749 536 GLKPDVVLY-------NNIIRAFCGM----GNMDRAIHIVKEMQKERHRPTSR-T---FMPIIHGFARAGE-MKRALEIF 599 (798)
Q Consensus 536 g~~~~~~~~-------~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~-~---~~~li~~~~~~~~-~~~a~~~~ 599 (798)
.+. ...- ..+-+..+.- -+...=+.+++.....++ |.. . +.--..-+.+.|. -++|++++
T Consensus 328 dp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 328 DPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred CCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 322 2211 1122222311 123333445555544432 211 1 1112233566666 78899999
Q ss_pred HHHHHcCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH--HHHhcCChHHHH
Q 003749 600 DMMRRSGCIPTVHTFNALI----LGLVE---KRQMEKAIEILDEMTLAGISPNE----HTYTTIMH--GYASLGDTGKAF 666 (798)
Q Consensus 600 ~~~~~~~~~p~~~~~~~li----~~~~~---~~~~~~A~~~~~~m~~~~~~p~~----~t~~~li~--~~~~~g~~~~A~ 666 (798)
+.+.+--. -|..+-|.+. ..|.+ ...+.+-+++-+-+.+.|+.|-. ..-|.|.+ .+...|++.++.
T Consensus 404 k~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 404 KLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 98876321 1333333222 12222 22344444444455566766543 33344443 346789999988
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003749 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721 (798)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (798)
-+-.-+.+ +.|+..+|..++-++....++++|+.++.++ +++..+++.
T Consensus 483 ~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 483 LYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 77666665 4689999999999999999999999999654 677777765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.7e-05 Score=73.45 Aligned_cols=266 Identities=17% Similarity=0.119 Sum_probs=170.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHH--HHHc--C-CCCCHHHHHHHH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLH----VYTNLIHAYAVGRDMEEALSCVRK--MKEE--G-IEMSLVTYSIIV 373 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~--m~~~--g-~~~~~~~~~~l~ 373 (798)
..-+++.|+.+..+.+|+.+++.|.. |.. +|.-|.++|.-.++|++|++...- .+.+ | -.-...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 44578999999999999999998732 433 466777888888999999986532 1111 1 011344555677
Q ss_pred HHHHhcCCHHHHHHHHHH----HHhcCC-CCChhhHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 003749 374 GGFAKMGNAEAADHWFEE----AKERHA-TLNAIIYGNIIYAQCQTRN--------------------MERAEALVRDME 428 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~ 428 (798)
..+.-.|.+++|+.+..+ ..+.|- ....-+++.+..+|...|+ ++.|.+.|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 777778889888765433 222221 2244567788888876654 233333332211
Q ss_pred ----HcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 429 ----EEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE----CGFS-PSIISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 429 ----~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
+.|- ..--..|..|.+.|.-.|+++.|+...+.-++ .|-+ .....+..|..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 00123466677777788899999887765432 2322 124567788899999999999999887654
Q ss_pred H----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 003749 499 S----SGI-KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG-----LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQ 568 (798)
Q Consensus 499 ~----~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 568 (798)
. .|- .....+.-.|.+.|.-..+++.|+.++.+-+... ..-....|-+|..+|...|..++|+.+.+...
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3 221 1234456678888888888999998887654321 11245567788999999999999888776654
Q ss_pred H
Q 003749 569 K 569 (798)
Q Consensus 569 ~ 569 (798)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00031 Score=62.60 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=54.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH
Q 003749 309 RGDMHRARQTFENMRARGIEPT---LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS--LVTYSIIVGGFAKMGNAE 383 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~ 383 (798)
.|+...+...++.+.+.. ..+ ......+...+...|++++|...|++..+....++ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555542 112 11222333555555666666666666555431111 123334455555555555
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRD 426 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (798)
+|+..++.... .......+.....+|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544221 122333444445555555555555555543
|
|
| >KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.2e-06 Score=85.15 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=74.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++..++|+-.|...+++.+|+++|+.+|.|.+|+++.| +.++++||.+||+|.|.+++..|| +| .|..+.|-+|.|
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aL--sGqrllg~pv~v 252 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-AL--SGQRLLGVPVIV 252 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecc-ccchhhcceeEEEEecccchhhHh-hh--cCCcccCceeEe
Confidence 45569999999999999999999999999999999999 999999999999999999999999 56 899999999999
Q ss_pred ecccc
Q 003749 229 KLDDG 233 (798)
Q Consensus 229 ~~~~~ 233 (798)
+....
T Consensus 253 q~sEa 257 (549)
T KOG0147|consen 253 QLSEA 257 (549)
T ss_pred cccHH
Confidence 87643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.013 Score=62.12 Aligned_cols=205 Identities=11% Similarity=0.141 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-GIEM--------SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (798)
.|....|..+.......-.++.|...|-+.... |+.. +...-..=+. +-.|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 567778888877766666777777666554331 1110 1111111122 23589999999998887663
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 003749 399 LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG-IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCL 477 (798)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 477 (798)
..|..+.+.|++-...++++.--... -.--...|+.+.+.+.....+++|.++|..-.. -...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 24566778888888777765311100 001145788888888888888888888775322 1235
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 003749 478 INLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNM 557 (798)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 557 (798)
+.+|.+..++++-..+...+ +-+....-.+.+++.+.|.-++|.+.|-+.- .. ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHHHHHH
Confidence 56666666666555444333 3355566677788888888888887764421 11 2344566666777
Q ss_pred HHHHHHHHH
Q 003749 558 DRAIHIVKE 566 (798)
Q Consensus 558 ~~A~~~~~~ 566 (798)
.+|.++-+.
T Consensus 895 ~~avelaq~ 903 (1189)
T KOG2041|consen 895 GEAVELAQR 903 (1189)
T ss_pred HHHHHHHHh
Confidence 777666554
|
|
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.8e-06 Score=85.45 Aligned_cols=85 Identities=28% Similarity=0.507 Sum_probs=78.4
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.....++|||+||..+++..++++...||.++...++.| ..+|-++||+|.+|-++.-...|+..+ ||..+.++.|.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d-~~~g~skg~af~ey~dpsvtd~A~agL--nGm~lgd~~lv 362 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD-SATGNSKGFAFCEYCDPSVTDQAIAGL--NGMQLGDKKLV 362 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc-cccccccceeeeeeeCCcchhhhhccc--chhhhcCceeE
Confidence 344569999999999999999999999999999999999 888999999999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|..|....
T Consensus 363 vq~A~~g~ 370 (500)
T KOG0120|consen 363 VQRAIVGA 370 (500)
T ss_pred eehhhccc
Confidence 99885553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00042 Score=61.80 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 003749 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPN---EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALL 688 (798)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 688 (798)
|..++..+ ..++...+...++.+.... ..+ ....-.+...+...|++++|...|+.+.+....++ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344343 4677777777777777653 222 22333455677778888888888888887653322 23445567
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
.++...|++++|+.+++..... ......+..++++|.+.|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888888664332 234556777888888888888888887764
|
|
| >PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2 | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.1e-05 Score=60.71 Aligned_cols=77 Identities=19% Similarity=0.368 Sum_probs=64.0
Q ss_pred cceeecCCCccCchHHHHHHhcc--cCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec----cee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQ--FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH----GRV 225 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~----g~~ 225 (798)
++|-|.|+|...|.++|.+++.. .|..--+.+..| ..++.+.|||||.|.+++.+.+-.+.+ +|..+. .+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD-f~~~~N~GYAFVNf~~~~~~~~F~~~f--~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID-FKNKCNLGYAFVNFTSPQAAIRFYKAF--NGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee-ccCCCceEEEEEEcCCHHHHHHHHHHH--cCCccccCCCCcE
Confidence 58999999999999999888754 266667788888 778889999999999999999999988 998875 444
Q ss_pred eeeecc
Q 003749 226 LTVKLD 231 (798)
Q Consensus 226 ~~v~~~ 231 (798)
+.|.+|
T Consensus 79 c~i~yA 84 (97)
T PF04059_consen 79 CEISYA 84 (97)
T ss_pred EEEehh
Confidence 555555
|
It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO). |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.8e-05 Score=50.47 Aligned_cols=33 Identities=45% Similarity=0.827 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003749 718 VYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (798)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (798)
+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.039 Score=55.82 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAG-ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY-EALL 688 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 688 (798)
..+|..+++...+..-++.|.++|-+..+.+ +.+++..++++|..++ .|+..-|..+|+--+..- +|...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 4567777887788888999999999998887 5677888888887665 578889999998766542 343333 5556
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRN--TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGD 766 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~ 766 (798)
.-+...++-+.|..+|+..++. +..+ ..+|..+|+-=..-|++..+..+=++|.+ +-|-..+...+.+-|.-..+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 6678889999999999966543 1223 56899999988999999999999999987 45666666666666654443
Q ss_pred -ccccccccccchhhhhh
Q 003749 767 -MQVRFSIPMLTKFYLFS 783 (798)
Q Consensus 767 -~~~a~~~~~~~~~~~~~ 783 (798)
..+-++...+.+..-+|
T Consensus 551 a~~~~le~t~~~n~rE~s 568 (660)
T COG5107 551 AILPPLEPTYMYNEREHS 568 (660)
T ss_pred ccCCCCCchhhhhhhhhh
Confidence 34445554555443333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00013 Score=71.91 Aligned_cols=285 Identities=13% Similarity=0.053 Sum_probs=149.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH--H--CCCCC-CHHHHHHHHH
Q 003749 444 DGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMK--S--SGIKH-NMKTYSMLIN 514 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~--~--~~~~~-~~~~~~~ll~ 514 (798)
.-+++.|+....+.+|+..++.|-. | ..+|..|..+|.-.+++++|+++...=+ . .|-+. ...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4567888888888888888877643 3 3456666777777777888877654321 1 11110 1222333444
Q ss_pred HHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 003749 515 GFLKLKDWANVFAVFEDV----MRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589 (798)
Q Consensus 515 ~~~~~~~~~~a~~~~~~~----~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 589 (798)
.+--.|.|++|+-...+- .+.|-. .....+..|...|...|+.-.-.. -.+.| .++.-+ .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g------~f~~ev-----~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKG------AFNAEV-----T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcc------cccHHH-----H
Confidence 555566677666443322 121111 122233344445544332100000 00000 000000 0
Q ss_pred CCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhc
Q 003749 590 GEMKRALEIFDMMRR----SGCI-PTVHTFNALILGLVEKRQMEKAIEILDEMT----LAGIS-PNEHTYTTIMHGYASL 659 (798)
Q Consensus 590 ~~~~~a~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~-p~~~t~~~li~~~~~~ 659 (798)
..++.|.++|.+-++ .|-. --...|..|...|.-.|+++.|+...+.-+ +-|-+ .....++.|..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 012233333322111 1100 012345556666666777887776654322 11211 2234677778888888
Q ss_pred CChHHHHHHHHHHH----HcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHc
Q 003749 660 GDTGKAFEYFTKLR----NEGL-ELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ-----KIPRNTFVYNILIDGWARR 729 (798)
Q Consensus 660 g~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 729 (798)
|+++.|.+.|+... +.|- .......-+|...|.-...++.|+.++.+-+.. +..-....|.+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 88888888777654 3332 234555667777777777788888777654321 1223455778888888888
Q ss_pred CCHHHHHHHHHHHHH
Q 003749 730 GDVWEAADLMQQMKQ 744 (798)
Q Consensus 730 g~~~~A~~~~~~m~~ 744 (798)
|..++|+.+.+.-++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888877766554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00023 Score=73.66 Aligned_cols=173 Identities=12% Similarity=0.134 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLA--GISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEAL 687 (798)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 687 (798)
+......+++.+....+++++..++.+.... .......|..++++.|.+.|..++++++++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555555566665666666666666665543 11122234456666666666666666666666666666666666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 003749 688 LKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767 (798)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 767 (798)
|+.+.+.|++..|.++...|..++...+..++..-+.+|.+-+ .-.+-|+..... -..+..--..+...|.+.|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~~---~~~~~~~~~~~~-~~~~~~EE~kvrv~~Lrn~~~ 220 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKYS---KEPKPFDDLEPK-PDLDWEEERKVRVKYLRNPYF 220 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhh---cccccccccCCC-CCCCchheEEeeeeeecCCcc
Confidence 6666666666666666666665555555555554444444431 111112211110 111222222344455566666
Q ss_pred cccccccccchhhhhhhhhh
Q 003749 768 QVRFSIPMLTKFYLFSFIWF 787 (798)
Q Consensus 768 ~~a~~~~~~~~~~~~~~~w~ 787 (798)
++-+.+.+-. .++-.+.|.
T Consensus 221 ddhfdl~~~~-L~GktLl~l 239 (429)
T PF10037_consen 221 DDHFDLTSPQ-LIGKTLLGL 239 (429)
T ss_pred ccccccCcHH-HHHHHHHHH
Confidence 6666665555 666677774
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.6e-05 Score=48.70 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003749 717 FVYNILIDGWARRGDVWEAADLMQQMKQEGVQP 749 (798)
Q Consensus 717 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 749 (798)
.+|+.++++|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888777766
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0017 Score=65.36 Aligned_cols=167 Identities=16% Similarity=0.259 Sum_probs=89.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 338 IHAYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 338 l~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
...|-..|++++|.+.|.+..+. +-.. -...|...+.+|.+. ++++|++.|++.. ..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~---------------~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI---------------EIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH---------------HHHH
Confidence 34555667777777777665431 1000 112233333344333 6666666555543 4566
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHHcCC
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIGK 486 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~ 486 (798)
+.|++..|-+++.++ ...|... |++++|++.|++..+. +-.- -...+..+...+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 777777766665544 3455555 7788888888776543 2100 12345566777888888
Q ss_pred HHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 487 VSKALEVSKVMKSSGIKH-----NMK-TYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 487 ~~~A~~~~~~m~~~~~~~-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
+++|+++|+++...-... +.. .+-..+-++...||...|.+.|++....
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888776643221 111 2222333455567777777777776654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.012 Score=57.39 Aligned_cols=68 Identities=6% Similarity=-0.018 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY---SIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (798)
+...+-.....+.+.|++++|++.|+++...- +-+.... ..++.+|.+.+++++|+..|++.++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 33334444555566788888888888877752 2222222 45566777788888888888887776443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00033 Score=56.28 Aligned_cols=81 Identities=16% Similarity=0.314 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGI-EPTLHVYTNLIHAYAVGR--------DMEEALSCVRKMKEEGIEMSLVT 368 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~ 368 (798)
+....|..+...|++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..++.|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345567777788999999999999999999 899999999999987653 34567889999999999999999
Q ss_pred HHHHHHHHHh
Q 003749 369 YSIIVGGFAK 378 (798)
Q Consensus 369 ~~~l~~~~~~ 378 (798)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00032 Score=72.60 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=105.9
Q ss_pred HHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 003749 286 SAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR--GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE 363 (798)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 363 (798)
..|.+....+.....++++.+....+.+++..++-+.+.. ....-..|.+++++.|.+.|..++++.+++.=...|+-
T Consensus 56 ~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF 135 (429)
T PF10037_consen 56 KKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIF 135 (429)
T ss_pred HHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccC
Confidence 3455555667778888888888888899999999988876 22223446789999999999999999999998999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003749 364 MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (798)
||.+++|.||+.+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 136 ~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 136 PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999998887776777776666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00073 Score=70.21 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=54.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChH
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQ 698 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 698 (798)
..+...|++++|+.+|+++++.. .-+...|..+..+|...|++++|+..++++++.... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666666543 334455556666666666666666666666665432 4555666666666666666
Q ss_pred HHHHHHHHHHhCC
Q 003749 699 SALAVTKEMSAQK 711 (798)
Q Consensus 699 ~A~~~~~~~~~~~ 711 (798)
+|+..|+++++.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.084 Score=55.96 Aligned_cols=129 Identities=12% Similarity=0.170 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
.|+.||.---...+.+.++.++..++.. .|... .|-.....=.+.|..+.+.++|++-+. |++.+...|......+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 3444444443334445555555555544 33333 334444444455666666666666655 2555555555554433
Q ss_pred H-hcCCHHHHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 377 A-KMGNAEAADHWFEEAKER-HA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 377 ~-~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
+ ..|+-+...+.|+.+... |. -.....|...|..-..++++.....+++++++
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 3 235555556666665542 11 11333455555555555555555555555554
|
|
| >KOG1995 consensus Conserved Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.4e-05 Score=75.72 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=76.7
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcce--------EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCe
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 219 (798)
.....+|||-+|+..+++++|..+|.+||.|+ .|.|-+| +.|+++||-|.|.|+|...|++|+.-+ ++.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~d-keT~~~KGeatvS~~D~~~akaai~~~--agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTD-KETGAPKGEATVSYEDPPAAKAAIEWF--AGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccc-ccccCcCCceeeeecChhhhhhhhhhh--ccc
Confidence 45566999999999999999999999999996 5778888 799999999999999999999999988 999
Q ss_pred eecceeeeeecccccc
Q 003749 220 EFHGRVLTVKLDDGRR 235 (798)
Q Consensus 220 ~~~g~~~~v~~~~~~~ 235 (798)
.+.|..|+|.++..+.
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999998886553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.9e-05 Score=59.88 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=43.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 309 RGDMHRARQTFENMRARGIE-PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
.|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|+.++++ .+.+. .+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666665321 1233444466666666666666666655 22211 123344445666666666666666
Q ss_pred HHHH
Q 003749 388 WFEE 391 (798)
Q Consensus 388 ~~~~ 391 (798)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00047 Score=56.05 Aligned_cols=94 Identities=27% Similarity=0.229 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
+..+...+...|++++|+.+|+.+.+.. ..+...+..+...+...+++++|.++|+...+.. +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445566666777777777777766653 2233556666666666677777777776666543 2234556666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 003749 379 MGNAEAADHWFEEAKE 394 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~ 394 (798)
.|++++|...|+...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.04 Score=51.70 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKL 672 (798)
Q Consensus 593 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~ 672 (798)
+..+++|++-. ..+.+.++..+...|.+.-.+.++++.++.+.+-+....+.|++.-.+.||.+.|..+|+++
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55566665533 34556677777778888888888888888766677788888888888999999999999877
Q ss_pred HHcCCCCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003749 673 RNEGLELDVFTYEAL-----LKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGV 747 (798)
Q Consensus 673 ~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 747 (798)
.+..-..|..+++.+ ...|.-.+++.+|...+.++...+ ..|+..-|.-.-++.-.|+..+|++.++.|++.
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-- 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-- 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 654333343333333 334555668888888888888766 566777777766777788999999999999874
Q ss_pred CCCHHHHHHHH
Q 003749 748 QPDVHTYTSFI 758 (798)
Q Consensus 748 ~pd~~~~~~l~ 758 (798)
.|...+-++++
T Consensus 316 ~P~~~l~es~~ 326 (366)
T KOG2796|consen 316 DPRHYLHESVL 326 (366)
T ss_pred CCccchhhhHH
Confidence 56555555444
|
|
| >PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.7e-05 Score=55.96 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=48.1
Q ss_pred ceeecCCCccCchHH----HHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 153 KIFVGNLPNWIKKHL----VMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.|||.|||.+.+... |++++..|| .|.+| +.|.|+|-|.+++.|.+|.+.| +|-.+.|++|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----------~~~tAilrF~~~~~A~RA~KRm--egEdVfG~kI~ 70 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----------SGGTAILRFPNQEFAERAQKRM--EGEDVFGNKIS 70 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHH--TT--SSSS--E
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----------eCCEEEEEeCCHHHHHHHHHhh--cccccccceEE
Confidence 689999999988875 466777886 55444 1578999999999999999999 99999999999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|.+....
T Consensus 71 v~~~~~~ 77 (90)
T PF11608_consen 71 VSFSPKN 77 (90)
T ss_dssp EESS--S
T ss_pred EEEcCCc
Confidence 9998443
|
Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A. |
| >PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.9e-05 Score=61.28 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=45.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC---Ceeecceeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD---GVEFHGRVLTV 228 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~---~~~~~g~~~~v 228 (798)
+.|+|.+++..++-++|++.|++||.|..|.+.++ ..-|||-|.++++|+.|+..+... +..+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 46888889999999999999999999999999875 457999999999999999988444 44555555544
Q ss_pred ec
Q 003749 229 KL 230 (798)
Q Consensus 229 ~~ 230 (798)
+.
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 43
|
It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00075 Score=67.53 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA-YAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
.+|..+++..-+.+..+.|+.+|.++++.+ ..+..+|-..... |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357777888888888889999999888653 2233444444444 22346677789999888876 56677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+.+.|+.+.|+.+|++.... ...+ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888899888888765 2211 236666666666667777666666666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00091 Score=58.34 Aligned_cols=93 Identities=6% Similarity=-0.156 Sum_probs=48.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003749 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (798)
..+...+...|++++|..+|+.+...+.. +..-|..|..++-..|++.+|+..|......++ .|...+..+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 33444444555555555555555544321 444455555555555555555555555555442 2455555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 003749 415 RNMERAEALVRDMEE 429 (798)
Q Consensus 415 g~~~~A~~~~~~m~~ 429 (798)
|+.+.|++.|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.7e-05 Score=48.12 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPT 330 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 330 (798)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.077 Score=53.81 Aligned_cols=83 Identities=10% Similarity=0.208 Sum_probs=65.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
|..+|..||..|...|.+++.++++++|..- ++--..+|..-+++=....++.....+|.+.+... .+...|...+.
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~ 117 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLE 117 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHH
Confidence 6778899999999999999999999999864 23344577777877777789999999999988864 45777777777
Q ss_pred HHHhcC
Q 003749 375 GFAKMG 380 (798)
Q Consensus 375 ~~~~~g 380 (798)
--.+.+
T Consensus 118 YIRr~n 123 (660)
T COG5107 118 YIRRVN 123 (660)
T ss_pred HHHhhC
Confidence 555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0089 Score=58.19 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=50.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCChHHHHHHHHHHHHcC
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVY---TNLIHAYAVGRDMEEALSCVRKMKEEG 361 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~A~~~~~~m~~~g 361 (798)
+...+......+.+.|++++|++.|+.+.... +-+.... -.++.+|.+.+++++|+..|++.++.-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44445556677788999999999999999873 2223332 456688899999999999999999863
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.01 Score=55.50 Aligned_cols=145 Identities=9% Similarity=0.083 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 313 HRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (798)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (798)
+..++++++-.. .+.+.++.++.-.|.+.-.+.++.+.++...+.+......|++.-.+.|+.+.|...|++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 555555554432 3556777777777888888888888888766667777788888888888888888888876
Q ss_pred HhcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 393 KERHATLNA-----IIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 393 ~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
.+..-..|. .+..+....|...+++.+|...+.+++..+ ..+....|.-+-+..-.|+..+|++.++.|++.
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 654222222 223333344455555666666665555543 233444444444444455555555555555553
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00074 Score=54.88 Aligned_cols=94 Identities=23% Similarity=0.266 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003749 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (798)
Q Consensus 649 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (798)
|..+...+...|++++|..+++++.+.... +...+..+..++...|++++|..+++...... +.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344455555666666666666666654322 33555566666666666666666666666543 3344566666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 003749 729 RGDVWEAADLMQQMKQ 744 (798)
Q Consensus 729 ~g~~~~A~~~~~~m~~ 744 (798)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777766666554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=55.88 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=10.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH
Q 003749 336 NLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
.+...+.+.|++++|.+.|+++++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~ 30 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLK 30 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=66.59 Aligned_cols=76 Identities=20% Similarity=0.409 Sum_probs=67.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~ 227 (798)
+++..+|+-|||.+++.+.+..+|.+|+..++++++.. + +|.+||+|.+...+..|..++ +|..+. ...+.
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-~-----~~iAfve~~~d~~a~~a~~~l--q~~~it~~~~m~ 215 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-R-----SGIAFVEFLSDRQASAAQQAL--QGFKITKKNTMQ 215 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-C-----CceeEEecchhhhhHHHhhhh--ccceeccCceEE
Confidence 34458999999999999999999999999999999975 1 689999999999999999999 998887 78888
Q ss_pred eeccc
Q 003749 228 VKLDD 232 (798)
Q Consensus 228 v~~~~ 232 (798)
|.+++
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 87764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.068 Score=54.10 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=49.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003749 618 ILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRM 697 (798)
Q Consensus 618 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (798)
|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++..++-.. . -.+.-|.-.+.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCCH
Confidence 334444555555555443332 34555555555555555555554443221 1 1223445555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 698 QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (798)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (798)
.+|..++.++ .+..-+..|.+.|++.+|.+.--
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555441 11334445555555555555433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=55.77 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIE--PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIV 373 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~ 373 (798)
++..++..+.+.|++++|++.|+.+.+..-. .....+..+..++.+.|++++|+..|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555566666666666665554210 01233444555555555555555555555543211 1133445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003749 374 GGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.++.+.|++++|+..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0032 Score=54.96 Aligned_cols=95 Identities=7% Similarity=-0.105 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT 447 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 447 (798)
..-.+...+...|++++|..+|+-+...+.. +..-|..|..++-..|++++|++.|......+ +.+...+..+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444555566677777777777777665433 66666667777777777777777777777665 345566666667777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003749 448 IIGNEEKCLIVFERLKE 464 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~ 464 (798)
..|+.+.|++.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777766666554
|
|
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.002 Score=67.78 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=64.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceE-EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+..|||-.||..+++.++.+.|++--.|++ |.+.. .-+++-++-|||+|..++.+..|...- ..++++.|.|+|.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~--~P~~~~~~~afv~F~~~~a~~~a~~~~--~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR--LPTDLLRPAAFVAFIHPTAPLTASSVK--TKFYPGHRIIRVD 509 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEecc--CCcccccchhhheeccccccchhhhcc--cccccCceEEEee
Confidence 458999999999999999999998888888 55544 467888999999999988888887654 7788888899886
Q ss_pred cc
Q 003749 230 LD 231 (798)
Q Consensus 230 ~~ 231 (798)
-.
T Consensus 510 si 511 (944)
T KOG4307|consen 510 SI 511 (944)
T ss_pred ch
Confidence 43
|
|
| >KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=65.02 Aligned_cols=8 Identities=25% Similarity=0.464 Sum_probs=3.2
Q ss_pred ceeeeeec
Q 003749 223 GRVLTVKL 230 (798)
Q Consensus 223 g~~~~v~~ 230 (798)
.|+|-|++
T Consensus 494 sRRiavey 501 (518)
T KOG1830|consen 494 SRRIAVEY 501 (518)
T ss_pred HHHHHHHh
Confidence 34444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0022 Score=59.12 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN--EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALL 688 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 688 (798)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|+..+.++++.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34455555566666777777777766654422221 245566666666666666666666666654332 345555555
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 767 (798)
.+|...|+...+..-++.... .+++|++++++.... .|+. +..++..+...|+.
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~~ 167 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCcc
Confidence 566665555444433332221 256677777777653 3333 55666666666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0012 Score=60.76 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL--DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (798)
..|..++..+...|++++|+..|++++.....+ ...++..+..+|...|++++|+..+++..... +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 445555566666677777777777766543222 12456666677777777777777777766543 334445555555
Q ss_pred HHH-------HcCCHHHHHHHHHHH
Q 003749 725 GWA-------RRGDVWEAADLMQQM 742 (798)
Q Consensus 725 ~~~-------~~g~~~~A~~~~~~m 742 (798)
++. +.|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 555 677777555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.8e-05 Score=46.86 Aligned_cols=29 Identities=38% Similarity=0.552 Sum_probs=12.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEG 361 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 361 (798)
+|+.+|.+|++.|+++.|+++|++|.+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34444444444444444444444444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00068 Score=64.84 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003749 620 GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (798)
-+.+.++|.+|+..|.+.++.. +-|.+-|..-..+|.++|.++.|++-.+..+..+.. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 3567778888888888887764 456667777777888888888888888777776533 46678888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHH
Q 003749 700 ALAVTKEMSAQKIPRNTFVY 719 (798)
Q Consensus 700 A~~~~~~~~~~~~~~~~~~~ 719 (798)
|.+.|++.++.. |+-.+|
T Consensus 168 A~~aykKaLeld--P~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELD--PDNESY 185 (304)
T ss_pred HHHHHHhhhccC--CCcHHH
Confidence 888888877754 554444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.002 Score=59.14 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
...|..+...+...|++++|+..|++.......+ ...++..+..+|...|++++|+..+++..+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456777788888899999999999988763222 23478888888999999999999998888753 33456666777
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 003749 374 GGFA-------KMGNAEAADHWFEE 391 (798)
Q Consensus 374 ~~~~-------~~g~~~~A~~~~~~ 391 (798)
..|. +.|++++|+..|++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 7776 56666655444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=67.72 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=69.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
.+.+...|++++|+++|+++++.. ..+...|..+..+|.+.|++++|+..++++++.. +.+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667788888888888888764 4466677777778888888888888888887764 23566777777888888888
Q ss_pred HHHHHHHHHHHhcC
Q 003749 383 EAADHWFEEAKERH 396 (798)
Q Consensus 383 ~~A~~~~~~~~~~~ 396 (798)
++|+..|+++++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.2e-05 Score=46.36 Aligned_cols=30 Identities=33% Similarity=0.735 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003749 718 VYNILIDGWARRGDVWEAADLMQQMKQEGV 747 (798)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 747 (798)
+|++|+++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00013 Score=57.86 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=45.0
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
.|++++|+.+|+++.+.... ++...+..++.+|.+.|++++|+.++++ ...+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777665321 1334455567777777777777777766 22211 123344444566666666666666
Q ss_pred HHHH
Q 003749 423 LVRD 426 (798)
Q Consensus 423 ~~~~ 426 (798)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=73.65 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=62.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.-|=+.+||+.+|++||.++|+.+ .|+++.+.+ .+|++.|=|||||.+.+++.+|++. +...+..|-|.|--+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~Alkk---dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKK---DRESMGHRYIEVFTA 83 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcC-ceeEEEEec---cCCCcCcceEEEeechHHHHHHHHh---hHHHhCCceEEEEcc
Confidence 355667999999999999999999 578877764 5899999999999999999999975 677788888887544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.011 Score=64.36 Aligned_cols=134 Identities=11% Similarity=0.053 Sum_probs=73.7
Q ss_pred CCCHhhHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC--------ChHHHHHHHHHHH
Q 003749 293 KPSRREFGLMVNYYAR--RG---DMHRARQTFENMRARGIEPTL-HVYTNLIHAYAVGR--------DMEEALSCVRKMK 358 (798)
Q Consensus 293 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g--------~~~~A~~~~~~m~ 358 (798)
..|...|...+++... .+ +...|+.+|+++++. .|+- ..|..+..+|.... ++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4466667666665433 22 266788888888877 3443 33443333332211 1223333333322
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 359 EE-GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 359 ~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
.. ....+..+|..+...+...|++++|...|++++..+ ++...|..+..+|...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 21 122244556666555556677777777777766654 35566666666666677777777777666664
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=65.64 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 003749 367 VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ-TRNMERAEALVRDMEEEGIDAPIDIYHMMMDG 445 (798)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 445 (798)
.+|..++....+.+..+.|+.+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666677777777666432 2233344443333222 34444566666666654 34455566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 446 YTIIGNEEKCLIVFERLKECGFSP---SIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
+...|+.+.|..+|++.... +.. ....|...+..=.+.|+++.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666543 211 123566666666666666666666666555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0032 Score=58.08 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=91.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (798)
....|..+...|...|++++|+..|++..+....+. ...+..+..+|.+.|++++|+..+++.++.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677888888999999999999999987632222 3578888899999999999999999988863 3356777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 373 VGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
..+|...|+...+..-++.... .+++|.+++++....+ | ..|..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--P--NNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--c--hhHHHHHHHHHhcCc
Confidence 8888888886666554444322 2566677777766643 2 224455555554443
|
|
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00076 Score=66.20 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=69.5
Q ss_pred ccceeecCC-CccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNL-PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl-~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+..|-|.|| .+.||.+.|-.+|+-||.|.+|+|...+ +.-|.|.+.|...|.-|+..| +|+.+.|++|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL--~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK------KDNALIQMSDGQQAQLAMEHL--EGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC------CcceeeeecchhHHHHHHHHh--hcceecCceEEEe
Confidence 568899999 5578999999999999999999999762 357999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++...+
T Consensus 369 ~SKH~~v 375 (492)
T KOG1190|consen 369 LSKHTNV 375 (492)
T ss_pred eccCccc
Confidence 9876543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=62.83 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=84.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003749 584 HGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTG 663 (798)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 663 (798)
.-+.+.++|.+|+..|.++++.... |.+.|..-..+|.+.|.++.|++-.+..+..+ .-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4477899999999999999997654 78888888999999999999999988888764 334579999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 664 KAFEYFTKLRNEGLELDVFTYEAL 687 (798)
Q Consensus 664 ~A~~~~~~~~~~~~~~~~~~~~~l 687 (798)
+|++.|++.++. .|+..+|-.=
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~n 188 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSN 188 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHH
Confidence 999999999986 4555555433
|
|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00021 Score=67.87 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=63.1
Q ss_pred ccceeecCCCccCchHHH------HHHhcccCcceEEEEecCCCCCCCCcc-e-EEEEeCChhHHHHHHHhcccCCeeec
Q 003749 151 EGKIFVGNLPNWIKKHLV------MEFFRQFGPIKNVILIKGYNNFEKNVG-F-GFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l------~~~f~~~g~v~~~~~~~~~~~~~~~~g-~-~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
..-+||-+|++.+..++. .++|.+||.|+.|.|.+.-.......+ + .||+|.+.++|.++|... +|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v--Dgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV--DGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh--cccccc
Confidence 346899999998888862 579999999999888763111111123 2 399999999999999999 999999
Q ss_pred ceeeeeecccc
Q 003749 223 GRVLTVKLDDG 233 (798)
Q Consensus 223 g~~~~v~~~~~ 233 (798)
||.|+..+...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999876543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=44.82 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=10.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
||.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.002 Score=51.95 Aligned_cols=76 Identities=14% Similarity=0.285 Sum_probs=45.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 688 LKACCKSGRMQSALAVTKEMSAQKI-PRNTFVYNILIDGWARR--------GDVWEAADLMQQMKQEGVQPDVHTYTSFI 758 (798)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~~~~~~l~ 758 (798)
|..|...+++.....+++.+++.++ -|+..+|+.++.+.++. +++-+++.+++.|+..+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 55555555555554432 12345667777777777888888888777
Q ss_pred HHHHH
Q 003749 759 NACSK 763 (798)
Q Consensus 759 ~~~~~ 763 (798)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77655
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.13 Score=55.69 Aligned_cols=88 Identities=14% Similarity=0.035 Sum_probs=47.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN--AEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
.+|.-++..+.|..|+++...+...-.. +..+|.....-+.+..+ -+++++..++=+... ......|..+......
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHh
Confidence 3455566667777777776655432111 14555566665655532 122333332222221 1355667777777777
Q ss_pred cCChHHHHHHHH
Q 003749 414 TRNMERAEALVR 425 (798)
Q Consensus 414 ~g~~~~A~~~~~ 425 (798)
.|+++.|..+++
T Consensus 520 ~GR~~LA~kLle 531 (829)
T KOG2280|consen 520 EGRFELARKLLE 531 (829)
T ss_pred cCcHHHHHHHHh
Confidence 777777776664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.052 Score=48.16 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGY 446 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~ 446 (798)
-...|...+.+.|++.||...|++...--..-|......+.++....+++.+|...++++-+.+. ..+.+....+...|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 33344444444444444444444443322223344444444444444444444444444444321 01122333344455
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003749 447 TIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~ 464 (798)
...|+..+|...|+....
T Consensus 171 aa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 171 AAQGKYADAESAFEVAIS 188 (251)
T ss_pred HhcCCchhHHHHHHHHHH
Confidence 555555555555555444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.18 Score=51.07 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=87.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (798)
Q Consensus 576 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 655 (798)
..+.+..|.-+...|+...|.++-.+.. .|+...|...+.+|+..++|++-.++... +-...-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 4456666777888899988888866552 36899999999999999999988776432 2234778999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
|.+.|+..+|..++.++ .+..-+..|.++|++.+|.+..-+.
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999988872 2256678899999999998776443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.016 Score=54.94 Aligned_cols=56 Identities=18% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 340 AYAVGRDMEEALSCVRKMKEEG--IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.+...|++.+|++.|+++...- .+.-......++.++.+.|++++|+..|++.++.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455555555555554431 0111233444445555555555555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.02 Score=50.71 Aligned_cols=129 Identities=14% Similarity=0.028 Sum_probs=76.3
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~ 373 (798)
.......|.+++.+.|++.+|...|++...--+.-|......+..+....+++.+|...++.+-+.... .+..+...+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 444455667777777777777777777766545556666666666677777777777777776664311 1234455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVR 425 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 425 (798)
+.|.-.|++..|...|+.....- |+...-......+.++|+.+++..-+.
T Consensus 168 R~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 66777777777777777766542 232222222334455565555544333
|
|
| >KOG4210 consensus Nuclear localization sequence binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00011 Score=72.24 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=72.6
Q ss_pred ccee-ecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 152 GKIF-VGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 152 ~~~~-v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++| |+|++..+++++|+.+|..+|.|..+++..+ ..+|..+||+||+|.+......++.. +...+.|+++.+..
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~-~~s~~~kg~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD-EESGDSKGFAYVDFSAGNSKKLALND---QTRSIGGRPLRLEE 260 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCC-CCccchhhhhhhhhhhchhHHHHhhc---ccCcccCccccccc
Confidence 3555 9999999999999999999999999999988 88999999999999999988888752 57889999999999
Q ss_pred ccccchh
Q 003749 231 DDGRRLK 237 (798)
Q Consensus 231 ~~~~~~~ 237 (798)
.+++...
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8877544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.054 Score=59.28 Aligned_cols=139 Identities=12% Similarity=0.196 Sum_probs=66.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAA 385 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 385 (798)
+.+.|++++|...|-+-+.. +.| ..+|.-|....++.+-...++.+.+.|+. +..--+.|+.+|.+.++.++-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 33556666666555444432 111 13444445555555555566666666544 334445566666666666665
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (798)
.++.+... .|.- ..-....+.++.+.+-.++|..+-.+... +..+. .-.+-..+++++|++++..+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl---~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVL---DILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHH---HHHHHHhcCHHHHHHHHhcC
Confidence 55544432 1110 11133344555555555555554443322 12222 22233455666666665544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.032 Score=52.86 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
..+......+.+.|++.+|++.|+.+...-. .-.......++.++.+.|++++|...|++.++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344556678899999999999999998621 122335677888999999999999999999876
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.013 Score=49.41 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=51.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHH
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPT--LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFA 377 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~ 377 (798)
+..++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|+.+|++....-.. .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566777777777777777654432 123444556666667777777777666654111 02222333344555
Q ss_pred hcCCHHHHHHHHHHHH
Q 003749 378 KMGNAEAADHWFEEAK 393 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~ 393 (798)
..|+.++|++++-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666665544
|
|
| >KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00013 Score=67.01 Aligned_cols=70 Identities=26% Similarity=0.412 Sum_probs=62.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++++|-|++.++...+|.+.|.++|.+...... .+++||+|++.+++.+|+..+ ++..+.|+.|.+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~---------~~~~~v~Fs~~~da~ra~~~l--~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR---------RNFAFVEFSEQEDAKRALEKL--DGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh---------ccccceeehhhhhhhhcchhc--cchhhcCceeee
Confidence 345689999999999999999999999999555441 689999999999999999999 999999999998
Q ss_pred e
Q 003749 229 K 229 (798)
Q Consensus 229 ~ 229 (798)
.
T Consensus 166 ~ 166 (216)
T KOG0106|consen 166 E 166 (216)
T ss_pred c
Confidence 4
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.082 Score=57.94 Aligned_cols=51 Identities=2% Similarity=0.120 Sum_probs=28.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
++..+.+..+.+.+..+.+..-+ -+...|-.+++.+++.+..++-.+...+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 44445555566666655554443 2666777777777776654444443333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.014 Score=56.48 Aligned_cols=127 Identities=19% Similarity=0.152 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHH
Q 003749 628 EKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG---RMQSALAVT 704 (798)
Q Consensus 628 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 704 (798)
+....-++.-+..+ +-|...|..|..+|...|+.+.|...|.+..+...+ +...+..+..++.... .-.++..+|
T Consensus 139 ~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 33333444434443 567889999999999999999999999999887533 6777777777765544 356888999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 705 KEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759 (798)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 759 (798)
++++..+ +-|+.....|...++..|++.+|...|+.|.+. .|....+..+|.
T Consensus 217 ~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 217 RQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 9999877 678888888889999999999999999999885 333344455543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.015 Score=63.20 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+...|..+.-.+...|++++|...++++.+.+ ++...|..++.++...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44566666555666677777777777777665 4666777777777777777777777777665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.014 Score=56.48 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=71.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG---RDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
|...|-.|..+|...|++..|...|.+..+.. ..|...+..+..++... .+-.++..+|+++++.+. -|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 66778888888888888888888888888763 44566655555554433 234677788888877653 26777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
|...+...|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 777788888888888888888775
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.075 Score=56.24 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003749 507 KTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (798)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 569 (798)
.+...+...+.+...+.-|-++|.+|-. ...++.+....+++.+|+.+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3444444444455566666666666532 13456666677777777776665544
|
|
| >KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00017 Score=66.22 Aligned_cols=74 Identities=19% Similarity=0.382 Sum_probs=62.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCC--------CCCcc----eEEEEeCChhHHHHHHHhccc
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF--------EKNVG----FGFVIYDGPAAEKSAMKAVEF 216 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--------~~~~g----~~fv~f~~~~~a~~a~~~~~~ 216 (798)
+..+.||++|+|+.++...|+++|+.||.|-.|.+... ..+ |..++ =|.|+|.+...|.++...|
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE-~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L-- 148 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE-DDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL-- 148 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecch-hhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh--
Confidence 35679999999999999999999999999999998875 333 33332 3679999999999999988
Q ss_pred CCeeeccee
Q 003749 217 DGVEFHGRV 225 (798)
Q Consensus 217 ~~~~~~g~~ 225 (798)
|+..|+|+.
T Consensus 149 nn~~Iggkk 157 (278)
T KOG3152|consen 149 NNTPIGGKK 157 (278)
T ss_pred CCCccCCCC
Confidence 999999976
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.022 Score=48.00 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=7.5
Q ss_pred HHHhcCCHHHHHHHHHH
Q 003749 445 GYTIIGNEEKCLIVFER 461 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~ 461 (798)
++...|+.++|+.++-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 33444444444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.023 Score=59.82 Aligned_cols=78 Identities=23% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----------HHHHHHHH
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV-----------FTYEALLK 689 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~l~~ 689 (798)
+.+...+.-|.++|.+|-+ ...+++.....+++.+|+.+-++.-+. .+|+ .-|...-.
T Consensus 757 lk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHH
Confidence 3344455555556655432 123445555666666666555544332 1111 12233334
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 003749 690 ACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~ 709 (798)
+|.++|+-.+|..+++++..
T Consensus 826 AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhh
Confidence 56666777777777766654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0075 Score=55.30 Aligned_cols=115 Identities=13% Similarity=0.190 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003749 610 TVHTFNALILGLVE-----KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684 (798)
Q Consensus 610 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 684 (798)
+..+|..+|..|.+ .|.++=....+..|.+-|+..|..+|+.|++.+=+ |.+- |.. .+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-FF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-HH
Confidence 55566666655543 24444455555555566666666666666555443 2211 000 01
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 003749 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD-VWEAADLMQQMK 743 (798)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~ 743 (798)
.++..-| -.+-+-|++++++|...|+-||.+++..|++.|.+.+. ..+..+++-.|.
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1111111 11235688999999999999999999999999987765 333444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.008 Score=55.13 Aligned_cols=87 Identities=22% Similarity=0.411 Sum_probs=59.6
Q ss_pred CHhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------CChHHHHHH
Q 003749 295 SRREFGLMVNYYAR-----RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG----------------RDMEEALSC 353 (798)
Q Consensus 295 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~A~~~ 353 (798)
+-.+|..+|..|.+ .|..+-....+..|.+.|+.-|..+|+.||.++=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55666666666654 466777777888999999999999999999987542 122345666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 354 VRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 354 ~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (798)
+++|...|+-||.+|+..|++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 6666666666666666666666654443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0021 Score=48.66 Aligned_cols=59 Identities=29% Similarity=0.281 Sum_probs=22.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEA 392 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 392 (798)
+|..+...+...|++++|+..|++.++.+ +-+...|..+..+|.+.| ++++|++.|++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33333334444444444444444443332 112333333334444443 344444444333
|
... |
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=68.16 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=66.5
Q ss_pred cccc-ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEG-KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~-~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
+.++ .|-+.|+|++++-+||.++|..|-.+-+-.+++. ...|+..|=|-|.|++.+.|.+|...+ ++..|..|.++
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~-nd~G~pTGe~mvAfes~~eAr~A~~dl--~~~~i~nr~V~ 940 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR-NDDGVPTGECMVAFESQEEARRASMDL--DGQKIRNRVVS 940 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEee-cCCCCcccceeEeecCHHHHHhhhhcc--ccCcccceeEE
Confidence 4444 6788999999999999999999976654333333 578999999999999999999999988 99999999988
Q ss_pred eec
Q 003749 228 VKL 230 (798)
Q Consensus 228 v~~ 230 (798)
+.+
T Consensus 941 l~i 943 (944)
T KOG4307|consen 941 LRI 943 (944)
T ss_pred EEe
Confidence 753
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=48.94 Aligned_cols=65 Identities=22% Similarity=0.147 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHc
Q 003749 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-NMERAEALVRDMEEE 430 (798)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 430 (798)
+..+|..++..+.+.|++++|+..|++.++.+.. +..+|..+..+|.+.| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4566777777777777777777777777776433 5666777777777777 577777777666553
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.35 Score=48.40 Aligned_cols=118 Identities=10% Similarity=0.042 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (798)
.|+-..|.++-.+..+. +..|..-...|+.+ -.-.|++++|.+-|+.|... .+.-..-...|....-+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 35555555555444322 22233333333332 22346666666666666542 1111111222222333556666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 422 ALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 422 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
+.-++.-+.- +--...+..++...+..|+++.|+++.+.-++
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 5555555432 22245566666666666666666666665544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0024 Score=47.55 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=39.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+...+.+.|++++|...|+++++.. +.+...+..++.++...|++++|+.+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456667777777777777777665 44666777777777777777777777777765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.75 Score=50.22 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 759 (798)
...+.+--+.-+...|.-.+|.++-.+.. -||...|..-+.+++..+++++..++-+.++. +.-|.-++.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 33445555666778888888888877665 37888888888999999998888887776652 223455888
Q ss_pred HHHHcCCccccccccccchhhhhhhhh
Q 003749 760 ACSKAGDMQVRFSIPMLTKFYLFSFIW 786 (798)
Q Consensus 760 ~~~~~g~~~~a~~~~~~~~~~~~~~~w 786 (798)
+|.+.|+.+||.........+.+...|
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~ekv~a 779 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQEKVKA 779 (829)
T ss_pred HHHhcccHHHHhhhhhccCChHHHHHH
Confidence 999999999999888887777755555
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0028 Score=47.25 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=23.9
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003749 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (798)
.+.+.|++++|+.+|+++++.. +-+...+..+..++.+.|++++|+.+|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444432 22344444444444444444444444444443
|
|
| >KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00038 Score=68.23 Aligned_cols=78 Identities=13% Similarity=0.239 Sum_probs=61.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+++.+.++|||++++|++|-.++..||.|..+.+.+. +..+|++|.|.++|..-+.....-.-.+.|++|.|+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 4568999999999999999999999999999999886 569999999999887744333111223778888888
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
++-.+
T Consensus 100 ~sn~~ 104 (492)
T KOG1190|consen 100 YSNHS 104 (492)
T ss_pred hhhHH
Confidence 75433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.86 Score=50.03 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=70.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
=|+++.+.+.+++|+.+.+..... .+ -...+...|..|.-.|++++|-.+.-.|... +..-|...+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 367888899999999887766543 33 3457888899999999999999999888754 66777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
.++...... -+.......+..+|..++..+..
T Consensus 436 ~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 766554332 22222222445566666555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0035 Score=47.23 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=26.6
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+.|++++|+.+|+++.... +.+...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555443 33445555555555555555555555555554
|
... |
| >KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0035 Score=67.20 Aligned_cols=9 Identities=44% Similarity=0.413 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 003749 265 WHRREFRKA 273 (798)
Q Consensus 265 ~a~~~f~~~ 273 (798)
++.+.|+..
T Consensus 441 e~~R~~nla 449 (830)
T KOG1923|consen 441 EQRRLFNLA 449 (830)
T ss_pred HHHHHHHHH
Confidence 334444333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0032 Score=47.44 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=24.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
+.|++++|+++|+.+.... +.+..++..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555554442 224444444555555555555555555554443
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.15 Score=52.18 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARG---IEPTLHVYTNLIHAYAV---GRDMEEALSCVRKMKEEGIEMSLVTYS 370 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (798)
.+...|+-.|-...+|+.-+++.+.|...- +..+..+-....-++-+ .|+.++|++++..+....-..+..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556778888999999988888751 11122222333344555 788999999988865555566888888
Q ss_pred HHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 003749 371 IIVGGFAKM---------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (798)
Q Consensus 371 ~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 441 (798)
.++..|... ...++|+..|.+.-+.. +|.+.-.+++..+.-.|.-.+...-++++. ..++
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~--------~~l~- 290 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIG--------VKLS- 290 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHH--------HHHH-
Confidence 888877542 23667777777776653 344443333333333333221111111111 0000
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 442 MMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
....+.|.. +-..|-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 291 --~llg~kg~~-------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 291 --SLLGRKGSL-------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred --HHHHhhccc-------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 111111111 11235556667777788888888888888888765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.02 Score=56.25 Aligned_cols=95 Identities=11% Similarity=0.027 Sum_probs=42.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKMGNAEAADHWFEEAKERHA--TLNAIIYGNII 408 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 408 (798)
|...+..+.+.|++++|+..|+.+++.- +-+ ...+..++.+|...|++++|+..|+.+..... .....++..++
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3333333344455555555555555531 111 13444555555555555555555555544311 11223333344
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 003749 409 YAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~ 429 (798)
.++.+.|+.++|.++|+++++
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444444555555555544444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.87 Score=48.66 Aligned_cols=396 Identities=12% Similarity=0.077 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
+-++.+|+.++...|-+. -.|......=.+.|..+.+.++|++.++. ++-++..|...+..+..
T Consensus 62 ~~~r~~y~~fL~kyPl~~---------------gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCY---------------GYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKN 125 (577)
T ss_pred HHHHHHHHHHHhhCccHH---------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhc
Confidence 445666666666665321 01222333334678899999999999874 67788888877766654
Q ss_pred -cCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH---Hhc---
Q 003749 344 -GRDMEEALSCVRKMKEE-GIE-MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ---CQT--- 414 (798)
Q Consensus 344 -~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~--- 414 (798)
.|+.+...++|+..... |.. .+...|-..|..-..++++.....+|+++++.- ..-++.....| .+.
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCCh
Confidence 57888888899888764 322 245678888888888999999999999998751 12222221111 111
Q ss_pred ---CChHHHHHHHHHHHHc-CC---CCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 003749 415 ---RNMERAEALVRDMEEE-GI---DAPIDIYHMMMDG-YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK 486 (798)
Q Consensus 415 ---g~~~~A~~~~~~m~~~-~~---~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 486 (798)
-..+++.++-.....+ .. ......+..-+.- -...+..+++.....+.. ...-.++-..-.
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~ 270 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEE 270 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHh
Confidence 1223333332222211 00 0000000000000 000111111111111111 111122222233
Q ss_pred HHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 003749 487 VSKALEVSKVMKSSG-------IKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDR 559 (798)
Q Consensus 487 ~~~A~~~~~~m~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 559 (798)
..+....|+.-++.- ...+..+|..-++.-.+.|+++.+.-+|+...-- +..-...|-..+.-....|+.+-
T Consensus 271 ~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 271 EEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred HHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhH
Confidence 333333444433321 1234567888888888899999999888887542 11223455555555556688888
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHH---HH
Q 003749 560 AIHIVKEMQKERHRPTSRTFMPIIHG-FARAGEMKRALEIFDMMRRSGCIPTVH-TFNALILGLVEKRQMEKAIE---IL 634 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~---~~ 634 (798)
|..++....+...+ +......+-.. .-..|+++.|..+++.+...- |+.. .-..-+....+.|..+.+.. ++
T Consensus 350 ~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~ 426 (577)
T KOG1258|consen 350 ANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELY 426 (577)
T ss_pred HHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHH
Confidence 87777666554433 22222222223 334679999999999887653 3322 22223445567777777763 33
Q ss_pred HHHHHCCCCCC--HHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 635 DEMTLAGISPN--EHTYTTIMH-GYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG 695 (798)
Q Consensus 635 ~~m~~~~~~p~--~~t~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 695 (798)
........... ...+....+ .+.-.++.+.|..++.++.+.- ..+...|..++..+...+
T Consensus 427 s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 427 SSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 32222111111 111111111 2233567888888888888763 346777777777766655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.019 Score=56.34 Aligned_cols=97 Identities=8% Similarity=0.039 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IEMSLVTYSI 371 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ 371 (798)
.|...+..+...|++++|+..|+.+++. .|+. .++..+..+|...|++++|+..|+.+++.- .......+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4555555556789999999999999997 3443 577888899999999999999999998752 1223566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (798)
++..|.+.|+.++|..+|+++++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7888999999999999999998763
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.018 Score=55.46 Aligned_cols=12 Identities=0% Similarity=0.147 Sum_probs=5.3
Q ss_pred CchHHHHHHhcc
Q 003749 163 IKKHLVMEFFRQ 174 (798)
Q Consensus 163 ~~~~~l~~~f~~ 174 (798)
++|.+.+++..+
T Consensus 357 lSeAEFEdiM~R 368 (498)
T KOG4849|consen 357 LSEAEFEDIMTR 368 (498)
T ss_pred chHHHHHHHHhh
Confidence 444444444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.80 E-value=1.1 Score=48.72 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003749 579 FMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV------HTFNALILGLV----EKRQMEKAIEILDEMTLAGISPNEHT 648 (798)
Q Consensus 579 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~t 648 (798)
+..++....=.|+-+.+++++.+..+.+-.-.. ..|..++..++ .....+.|.++++.+... .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 334444445556666666666655443211111 12333333322 245677888888888875 566665
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003749 649 YTTI-MHGYASLGDTGKAFEYFTKLRNEG---LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (798)
Q Consensus 649 ~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (798)
|... .+.+...|+.++|++.|++..+.. .......+--+..++.-..+|++|...|.++.+.+ ..+..+|.-+.-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 5443 356667788888888888765321 12334556667777888889999999998888765 344445544433
Q ss_pred H-HHHcCCH-------HHHHHHHHHHHH
Q 003749 725 G-WARRGDV-------WEAADLMQQMKQ 744 (798)
Q Consensus 725 ~-~~~~g~~-------~~A~~~~~~m~~ 744 (798)
+ +...|+. ++|.++|++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 3456777 788888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.21 Score=41.79 Aligned_cols=140 Identities=16% Similarity=0.283 Sum_probs=84.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAF 666 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 666 (798)
.-.|..++..++..+.... .+..-+|.+|.-....-+-+-..++++..-.. -|. ...|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 3467788888888887764 35666777766555555555555555544321 111 2234444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003749 667 EYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (798)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (798)
..+..+- .+....+..+..+.+.|+-+.-.++..++...+ .++....--+..+|.+.|+..++.+++++..+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 4443321 244456777788889999999889988887543 5788888899999999999999999999999988
Q ss_pred CC
Q 003749 747 VQ 748 (798)
Q Consensus 747 ~~ 748 (798)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.24 Score=46.26 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.|..-..+|-...++++|...+.+..+. .+.+...|++ . .-++.|..+.++|.+. .--+..|+....+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-A------KayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-A------KAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-H------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3445556777778888888888777753 1333333322 1 3345666666666653 223445666777788
Q ss_pred hcCCHHHHHHHHHHHH
Q 003749 378 KMGNAEAADHWFEEAK 393 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~ 393 (798)
..|..+.|-..+++.-
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 8888777777776654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.065 Score=57.89 Aligned_cols=116 Identities=17% Similarity=0.038 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCCHHHHH
Q 003749 381 NAEAADHWFEEAKERHATLNAIIY-GNIIYAQCQTRNMERAEALVRDMEEEGI---DAPIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
..+.|.++++.+..+ -|+...| ..-.+.+...|++++|.+.|++...... ......+.-++..+...+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 345555555555554 2232222 2234445555555555555554432110 111233445555666666666666
Q ss_pred HHHHHHHHCCCCcCHHHHHH-HHHHHHHcCCH-------HHHHHHHHHHHH
Q 003749 457 IVFERLKECGFSPSIISYGC-LINLYTKIGKV-------SKALEVSKVMKS 499 (798)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~-------~~A~~~~~~m~~ 499 (798)
+.|.++.+..-- +...|.- ...++...|+. ++|.++|.++..
T Consensus 326 ~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 666666654211 2222222 23344555555 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0038 Score=63.86 Aligned_cols=66 Identities=29% Similarity=0.415 Sum_probs=50.7
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEe-cCC-CCCCCCcc---eEEEEeCChhHHHHHHHhc
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILI-KGY-NNFEKNVG---FGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~-~~~-~~~~~~~g---~~fv~f~~~~~a~~a~~~~ 214 (798)
.+-.++||||+||++++|+.|...|..||.+. |... +.. +.---++| |+|+.|+++.+++.-+.+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 35567999999999999999999999999985 2222 110 11112367 9999999999999999887
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.54 Score=48.19 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=82.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 581 PIIHGFARAGEMKRALEIFDMMRRSG---CIPTVHTFNALILGLVE---KRQMEKAIEILDEMTLAGISPNEHTYTTIMH 654 (798)
Q Consensus 581 ~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 654 (798)
.++-+|....+++..+++.+.+...- +.-...+-.....++-+ .|+.++|+.++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444555556666666665555431 00011111122233444 5566666666665444444555555555555
Q ss_pred HHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hH---HHHHHH---H-HHHhCC---CCC
Q 003749 655 GYAS---------LGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR-MQ---SALAVT---K-EMSAQK---IPR 714 (798)
Q Consensus 655 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~-~~~~~~---~~~ 714 (798)
.|-. ....++|++.|.+.-+.. +|...--.+...+...|. ++ +..++- . .+.+.+ -..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 112666777777665543 332222222222333332 21 222222 1 111222 124
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
+.+-+..++.+..-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 5556678888888999999999999999875
|
|
| >KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0039 Score=65.05 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=55.0
Q ss_pred HHHHHhcccCcceEEEEecCCC--CCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccccchh
Q 003749 167 LVMEFFRQFGPIKNVILIKGYN--NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLK 237 (798)
Q Consensus 167 ~l~~~f~~~g~v~~~~~~~~~~--~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~~~~ 237 (798)
+++.-+++||.|..|.+.++.. ...-.-|..||+|.+.+++++|.++| +|.++.||.+...+...-...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L--~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEEL--TGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHc--cCceeCCcEEEEEecCHHHhh
Confidence 4566678999999999988621 11222578899999999999999999 999999999998887655433
|
|
| >KOG1996 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0049 Score=57.78 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=52.4
Q ss_pred HHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccccc
Q 003749 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (798)
Q Consensus 167 ~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~ 234 (798)
++.+...+||.|.+|.|..+....-.-.---||+|+..++|.+|+-.| ||..|+||.++-.|..--
T Consensus 302 e~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdl--nGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 302 ETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDL--NGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhc--CCceecceeeeheeccHH
Confidence 567788999999999988762222222345799999999999999999 999999999988776433
|
|
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.012 Score=57.26 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=68.8
Q ss_pred cccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+++.+.|.+|.. .+.-+.|-++|-.||.|+.|+.++. + .|-|.|++.|....++|+..| |+..+.|.+|.|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k-----~gtamVemgd~~aver~v~hL--nn~~lfG~kl~v 357 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-K-----PGTAMVEMGDAYAVERAVTHL--NNIPLFGGKLNV 357 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-c-----cceeEEEcCcHHHHHHHHHHh--ccCccccceEEE
Confidence 445889999966 4556789999999999999999976 2 589999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++-..+
T Consensus 358 ~~SkQ~~v 365 (494)
T KOG1456|consen 358 CVSKQNFV 365 (494)
T ss_pred eecccccc
Confidence 99876653
|
|
| >KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0025 Score=67.11 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=60.3
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++||||+...+..+-++.....||-|..++... |||++|.+.....+|+..+ +...++|..+.++..
T Consensus 42 ~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----------fgf~~f~~~~~~~ra~r~~--t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 42 TVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----------FGFCEFLKHIGDLRASRLL--TELNIDDQKLIENVD 108 (668)
T ss_pred eeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----------hcccchhhHHHHHHHHHHh--cccCCCcchhhccch
Confidence 899999999999999999999999999886652 9999999999999999988 888899988877664
|
|
| >KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0063 Score=58.80 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=64.6
Q ss_pred hcccccceeecCCCc----cCc-------hHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcc
Q 003749 147 EFRQEGKIFVGNLPN----WIK-------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVE 215 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~----~~~-------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 215 (798)
..+..++|.+.|+=. ..+ .++|++--++||.|.+|.|.-. .+.|.+-|.|.+.+.|..||+.|
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-----hPdGvvtV~f~n~eeA~~ciq~m- 334 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-----HPDGVVTVSFRNNEEADQCIQTM- 334 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-----CCCceeEEEeCChHHHHHHHHHh-
Confidence 445667888888822 222 1345566789999999988743 34799999999999999999999
Q ss_pred cCCeeecceeeeeecccccc
Q 003749 216 FDGVEFHGRVLTVKLDDGRR 235 (798)
Q Consensus 216 ~~~~~~~g~~~~v~~~~~~~ 235 (798)
+|..++||+|.-.+..++.
T Consensus 335 -~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 335 -DGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred -cCeeecceEEEEEEeCCcc
Confidence 9999999999988776654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.2 Score=45.98 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
......+...|+++.+.+.+...... +.....+...+++...+.|++++|+.+-+-|+...++ +.+.........-..
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l 404 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADAL 404 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHH
Confidence 33345567889999999998877664 3456677888899999999999999999999877666 666666666666778
Q ss_pred CCHHHHHHHHHHHHhcCCCCCh
Q 003749 380 GNAEAADHWFEEAKERHATLNA 401 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~ 401 (798)
|-++++.-.+.++...+.+.+.
T Consensus 405 ~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 405 QLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred hHHHHHHHHHHHHhccCChhcc
Confidence 8899999999988876554333
|
|
| >KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0049 Score=63.08 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=59.6
Q ss_pred ccccceeecCCCccCchHHHHHHhc-ccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
.+.++||||+||.-++-++|-.+|. -||.|..+-|=.| ..-+.++|=|-|+|.+..+..+||.+-
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD-~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD-PKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC-cccCCCCCcceeeecccHHHHHHHhhh
Confidence 5678999999999999999999998 8999999999888 566888999999999999999999863
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.91 Score=43.93 Aligned_cols=124 Identities=18% Similarity=0.100 Sum_probs=55.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 003749 620 GLVEKRQMEKAIEILDEMTLAGI--SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRM 697 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 697 (798)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.++...........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34444555555555554433110 0122222223333444555555555555555432211234455555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 698 QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+.|...+....... +.....+..+...+...|+.+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555432 11123333333444444455556555555554
|
|
| >PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.011 Score=50.45 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=51.2
Q ss_pred cccccceeecCCC------ccCchH---HHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC
Q 003749 148 FRQEGKIFVGNLP------NWIKKH---LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (798)
Q Consensus 148 ~~~~~~~~v~nl~------~~~~~~---~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 218 (798)
+++..+|-|.=+. ...+++ +|-+.|+.||.+.-+|++.+ .-.|+|.+-.+|.+|+. + +|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~---------~mwVTF~dg~sALaals-~--dg 91 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD---------TMWVTFRDGQSALAALS-L--DG 91 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT---------CEEEEESSCHHHHHHHH-G--CC
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC---------eEEEEECccHHHHHHHc-c--CC
Confidence 3455567666454 123332 56778899999998888754 67899999999999986 3 89
Q ss_pred eeecceeeeeeccccc
Q 003749 219 VEFHGRVLTVKLDDGR 234 (798)
Q Consensus 219 ~~~~g~~~~v~~~~~~ 234 (798)
..+.|+.|+|++..+.
T Consensus 92 ~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 92 IQVNGRTLKIRLKTPD 107 (146)
T ss_dssp SEETTEEEEEEE----
T ss_pred cEECCEEEEEEeCCcc
Confidence 9999999999876443
|
; PDB: 1UFW_A 2DNR_A. |
| >KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0059 Score=62.04 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=60.8
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceE-EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
..|=+.+||+.+|++||.++|+.---|.. +.++.| ..|++.|=|||.|++.+.|++|+.. |...|..|-|.|-.
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae~Al~r---hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD--QRGRPTGEAFVQFESQESAEIALGR---HRENIGHRYIEVFR 178 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeecc--CCCCcccceEEEecCHHHHHHHHHH---HHHhhccceEEeeh
Confidence 36677899999999999999997654444 455665 4477899999999999999999976 57888888888754
Q ss_pred c
Q 003749 231 D 231 (798)
Q Consensus 231 ~ 231 (798)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 4
|
|
| >KOG1855 consensus Predicted RNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.002 Score=63.89 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=54.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecC---C-CCCCCC--------cceEEEEeCChhHHHHHHHhc
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG---Y-NNFEKN--------VGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~-~~~~~~--------~g~~fv~f~~~~~a~~a~~~~ 214 (798)
+.++|.+-|||.+-.-+.|.++|+.+|.|+.|+|..- . ...|.+ +-||+|+|+..+.|.+|.+.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 5679999999999999999999999999999999863 0 011222 568999999999999999887
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.6 Score=50.50 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=8.3
Q ss_pred HHHHccCChHHHHHH
Q 003749 339 HAYAVGRDMEEALSC 353 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~ 353 (798)
.-++..++|.+|+++
T Consensus 685 r~~l~~~~y~~AF~~ 699 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEV 699 (1265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455666666555
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.2 Score=44.33 Aligned_cols=87 Identities=9% Similarity=-0.109 Sum_probs=40.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
+...|++++|+.+|+-+.-.+ ..+...|..|..+|-..+++++|+..|......+. -|...+-.+..+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 334444444444444444433 22333444444444455555555555444433322 1333344445555555555555
Q ss_pred HHHHHHHHH
Q 003749 491 LEVSKVMKS 499 (798)
Q Consensus 491 ~~~~~~m~~ 499 (798)
++.|...++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.95 Score=43.20 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=31.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRDGLKPDV---VLYNNIIRAFCGMGNMDRAIHIVKEMQK 569 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 569 (798)
+.+.|.+.|.+..|..-++.|++. ..-+. ..+-.+..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445666667777777777766665 22121 2333455566666666666655544433
|
|
| >PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0056 Score=42.82 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=39.8
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHH
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 211 (798)
.|-|.+.+++.. +++...|..||+|.++.+-.+ ..+.+|.|.+..+|.+|+
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~-------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES-------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC-------CcEEEEEECCHHHHHhhC
Confidence 466777776654 445668999999999888633 569999999999999884
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.021 Score=43.59 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=33.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 689 KACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.+|.+.+++++|.++++.+...+ +.+...|..+..++.+.|++++|.+.|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556666666666666666554 44555555566666666666666666666655
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.6 Score=45.51 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=96.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 003749 399 LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLI 478 (798)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 478 (798)
.|.....+++..+....+..-.+.+..+|...| .+...|..++.+|..+ ..+.-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556666777777777777777777777654 3456667777777766 445566677777665544 444444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 003749 479 NLYTKIGKVSKALEVSKVMKSSGIKH--N---MKTYSMLINGFLKLKDWANVFAVFEDVMRD-GLKPDVVLYNNIIRAFC 552 (798)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~ 552 (798)
..|-+ ++.+.+..+|.++...-+.. + -..|.-|.... ..+.+..+.+..++... |...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 54544 66677777777665432210 1 12444443322 34556666666555442 33334455555666667
Q ss_pred cCCChHHHHHHHHHHHHCC
Q 003749 553 GMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~ 571 (798)
...++++|++++.-+.+.+
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 7777777777777665544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.3 Score=44.46 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003749 591 EMKRALEIFDMMRRSGCIPTVHTF-NALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYF 669 (798)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 669 (798)
+...|...-.+..+. .||..-- ..-..+|.+.|+..++-++++.+-+.. |....+.. ..+.+.|+. ++.=+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gdt--a~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGDT--ALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCCc--HHHHH
Confidence 345555555555443 3443222 223456889999999999999998774 44443332 234455552 33323
Q ss_pred H---HHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 003749 670 T---KLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR-GDVWEAADLMQQMKQE 745 (798)
Q Consensus 670 ~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 745 (798)
+ ++.+... .+......+..+-...|++..|..--+..... .|....|-.|.+.-... ||-.++...+-+....
T Consensus 316 kRa~~L~slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3 2333322 25667777888888899998888777766654 47788888888876655 9999999888888765
Q ss_pred CCCC
Q 003749 746 GVQP 749 (798)
Q Consensus 746 g~~p 749 (798)
--.|
T Consensus 393 PrdP 396 (531)
T COG3898 393 PRDP 396 (531)
T ss_pred CCCC
Confidence 4444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.35 E-value=2.8 Score=48.57 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 003749 510 SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA 589 (798)
Q Consensus 510 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 589 (798)
.-.++.-.+.+.+.+|+.++..-.+ .-...|.+...-+....++++|.-+|+..-+ ....+.+|..+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~ 978 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKEC 978 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHh
Confidence 3344444455666666655532111 1223444455555667778888777765432 23356678888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 590 GEMKRALEIFDMMRRSGCIPTV--HTFNALILGLVEKRQMEKAIEILDEMTL 639 (798)
Q Consensus 590 ~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~ 639 (798)
|+|.+|+.+..++... -+. .+-..|+.-+...++.-+|-+++.+...
T Consensus 979 ~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 979 GDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred ccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 8888888888776532 122 2225667777788888888888776653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.44 Score=46.26 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=59.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
..|++.+|..+|+......-. +...-..++.+|...|+++.|..++..+....-.........-|..+.+.....+..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 445555555555555443211 3334444555555555555555555544332111111111122233333333333333
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcC
Q 003749 423 LVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--GFSPSIISYGCLINLYTKIG 485 (798)
Q Consensus 423 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 485 (798)
+-.++-.. +-|...-..+...|...|+.++|++.+-.+... |.. |...-..|+..+.-.|
T Consensus 225 l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 225 LQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 33333321 224445555555556666666665555555443 222 3344444554444444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.066 Score=47.23 Aligned_cols=85 Identities=11% Similarity=-0.143 Sum_probs=35.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
..|++++|..+|.-+...++- +..-|..|..++-..+++++|+..|......+. -|...+..+..+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 344444444444444433221 333344444444444444444444444433322 133333334444444444444444
Q ss_pred HHHHHHH
Q 003749 423 LVRDMEE 429 (798)
Q Consensus 423 ~~~~m~~ 429 (798)
.|...++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.2 Score=43.09 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=22.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
+...++.+.+...+.++...........+..+...+...++++.+...+.....
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 344445555555544444432110233334444444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.078 Score=47.23 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 405 GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
..++..+...|++++|.++++.+.... +.+...|..+|.+|...|+...|+++|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334445555566666666666665553 3455555566666666666666666555553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT [] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.021 Score=45.90 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=48.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEe-cCCC-----CCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILI-KGYN-----NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~-~~~~-----~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
+-|.|=+.|+. .-..+-+.|++||.|.+..-. ++.+ ........-.|.|+++.+|.+|+.. ||..+.|..
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~---NG~i~~g~~ 82 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK---NGTIFSGSL 82 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT---TTEEETTCE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh---CCeEEcCcE
Confidence 35666677777 556678899999999877511 1100 0001156889999999999999965 999999865
Q ss_pred e-eeeccc
Q 003749 226 L-TVKLDD 232 (798)
Q Consensus 226 ~-~v~~~~ 232 (798)
| -|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466653
|
This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.22 Score=48.62 Aligned_cols=158 Identities=13% Similarity=0.023 Sum_probs=113.2
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhH--HHHHHHHHhcC
Q 003749 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER-HATLNAIIY--GNIIYAQCQTR 415 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~g 415 (798)
..+...|+..+|...++++++. ++-|...+.-.-.+|.-.|+.+.-...+++++.. +......+| ..+.-++.+.|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 3455678999999999999886 6668888888888999999999999999998765 211112233 33334456899
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 416 NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC---GFSPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 416 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
-+++|++.-++..+.+ +.|.....++.+.+...|+++++.+.+.+-... +.-.-..-|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999998876 667888889999999999999999887765432 100112223334445666678888888
Q ss_pred HHHHHH
Q 003749 493 VSKVMK 498 (798)
Q Consensus 493 ~~~~m~ 498 (798)
+|+.-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 876543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.11 Score=44.39 Aligned_cols=108 Identities=10% Similarity=0.178 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003749 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (798)
Q Consensus 645 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (798)
|..++.++|.++++.|+.+....+++..= |+..+... ..+. .-....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45667777777777777777766665442 22211100 0000 1112234567777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCcccccc
Q 003749 725 GWARRGDVWEAADLMQQMKQ-EGVQPDVHTYTSFINACSKAGDMQVRFS 772 (798)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~~l~~~~~~~g~~~~a~~ 772 (798)
+|+..|++..|+++++...+ .++..+..+|..|+.-+...-+.+....
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~~~~~ 109 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKREDRA 109 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 77777777777777777654 3666667777777776666655444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.03 Score=42.78 Aligned_cols=55 Identities=24% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.|.+.+++++|+++++.+++.+ +.+...|.....+|.+.|++++|++.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455555555555555442 124444444555555555555555555555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.081 Score=53.41 Aligned_cols=139 Identities=13% Similarity=0.018 Sum_probs=85.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (798)
-.+.|.+.|++..|...|++++..= . |.+.-+.++..... .+ -..+++.|+.+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-~------------~~~~~~~ee~~~~~-~~-------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-E------------YRRSFDEEEQKKAE-AL-------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-h------------ccccCCHHHHHHHH-HH-------HHHHhhHHHHHHHhhhh
Confidence 4577888888888888888876530 0 00111112221111 11 23467777788888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHH
Q 003749 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK-CLIVFE 460 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~ 460 (798)
+.+|++..++.+..+.. |+.....-..+|...|+++.|+..|+++++.. +.|-.+-+.|+.+..+.....+ ..++|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877543 77777777788888888888888888888763 3344444555544444433332 245555
Q ss_pred HHH
Q 003749 461 RLK 463 (798)
Q Consensus 461 ~~~ 463 (798)
.|.
T Consensus 351 ~mF 353 (397)
T KOG0543|consen 351 NMF 353 (397)
T ss_pred HHh
Confidence 554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=2.7 Score=46.42 Aligned_cols=168 Identities=11% Similarity=0.098 Sum_probs=97.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEM---SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ 413 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 413 (798)
-|+.+.+.+.+++|+++.+..... .+ -...+...|..+...|++++|-...-+|... +..-|...+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 356677888999999987655432 33 2456778888889999999999988888754 66777777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 003749 414 TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEV 493 (798)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (798)
.++......++ ....-..+..+|..++..+.. .+. .-|.++... . +...|..+...-+-.
T Consensus 436 ~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-W--p~~Lys~l~iisa~~--------- 495 (846)
T KOG2066|consen 436 LDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-W--PGHLYSVLTIISATE--------- 495 (846)
T ss_pred ccccchhhccC---CCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-C--ChhhhhhhHHHhhcc---------
Confidence 66665433332 221112345667777777665 222 222222221 1 222333222111111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 494 SKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 494 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
.++.+. .-+......|+..|...+++..|+.++-...
T Consensus 496 -~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 496 -PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred -hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 111111 1122233347888888888988888887664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.1 Score=55.49 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=89.5
Q ss_pred HHHHHcCChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 304 NYYARRGDMHRARQTFE--NMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 304 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (798)
+.....|+++++.++.+ .+.. .+ .....+.+++.+-+.|..+.|+.+...- . .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCC
Confidence 44556778887766664 1111 11 2445677888888888888888764332 1 23345567788
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (798)
++.|.++-++. .+...|..|.....+.|+++-|++.|.+..+ +..|+-.|...|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88877665432 2566777777777788888887777776543 45666677777777666666655
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 462 LKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 462 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (798)
....| -++....++.-.|+.++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55443 244555555666666666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.37 Score=50.10 Aligned_cols=116 Identities=7% Similarity=-0.058 Sum_probs=71.8
Q ss_pred hHHHHHHHHHH---hcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHH---------HcCChHHHHHHHHHHHHCCCCCCH
Q 003749 264 EWHRREFRKAV---ETQPENWQAVVSAFERIKKPSRREFGLMVNYYA---------RRGDMHRARQTFENMRARGIEPTL 331 (798)
Q Consensus 264 ~~a~~~f~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~ 331 (798)
+.|...|.+++ +.+|. ....|..+..++. ...+..+|+++.++.++.+ ..|.
T Consensus 275 ~~Al~lf~ra~~~~~ldp~---------------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da 338 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTL---------------KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDG 338 (458)
T ss_pred HHHHHHHHHHhhcccCCcc---------------cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCH
Confidence 67888888888 66765 1222222222211 2334566777777777765 4466
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (798)
.....+..++.-.++++.|..+|++....+ +....+|........-.|+.++|++.+++..+..
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 666666666666677777777777777653 2235556666666666777777777777766553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.9 Score=41.74 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
.-|+--|...+..+|. -+..||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| -
T Consensus 82 ~LAR~DftQaLai~P~---------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y 145 (297)
T COG4785 82 ALARNDFSQALAIRPD---------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-Y 145 (297)
T ss_pred HHHhhhhhhhhhcCCC---------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-e
Confidence 6778888888888886 56778889999999999999999999999885333333445445444 4
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCChhhHHHHH-HHHHhcCChHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADH-WFEEAKERHATLNAIIYGNII-YAQCQTRNMERA 420 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A 420 (798)
-|++.-|.+-|...-..+.. |--..|..+... .-+..+|.. +.++.... |..-|...| ..|...=..
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~---k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~--- 215 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ---KLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE--- 215 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh---hCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH---
Confidence 58898888877776654321 223344444332 234445543 34444433 434444332 222221111
Q ss_pred HHHHHHHHHcCCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 421 EALVRDMEEEGID------APIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 421 ~~~~~~m~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
+.+++++....-. .-..+|.-|.+.|...|+.++|..+|+-...
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2233333322110 0134556666666666666666666665554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.3 Score=42.34 Aligned_cols=173 Identities=11% Similarity=0.029 Sum_probs=86.8
Q ss_pred ccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc------
Q 003749 343 VGRDMEEALSCVRKMKEEG--IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT------ 414 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 414 (798)
+.|++++|.+.|+.+..+- -+....+...++-++.+.+++++|+..+++.+..........|..-|.+++..
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 5567777777776666541 11223344455556666777777777777766654433333333333333311
Q ss_pred -CCh---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 415 -RNM---ERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 415 -g~~---~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
.+. .+|..-|++++++ -|+ ..-..+|...+..+... =..-=..+.+.|.+.|.+..|
T Consensus 126 ~rDq~~~~~A~~~f~~~i~r--yPn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQR--YPN-------------SRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHH--CCC-------------CcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHH
Confidence 122 2333344444443 111 11111222222221110 000011345677888888888
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 491 LEVSKVMKSSGIKHNM---KTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 491 ~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
..-++.|++. .+.+. ..+-.|..+|...|-.++|...-+-+...
T Consensus 187 ~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 187 INRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 8888888775 33222 24445566777777777777665555443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0069 Score=62.33 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=59.3
Q ss_pred ccceeecCCCccCch--H----HHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-c
Q 003749 151 EGKIFVGNLPNWIKK--H----LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-G 223 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~--~----~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g 223 (798)
...|+|-|.|---.. + -|..+|+++|+|.+..+..+ ..|+++||.|++|++..+|..|++.+ ||+.|+ .
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~--e~ggtkG~lf~E~~~~~~A~~aVK~l--~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPID--EEGGTKGYLFVEYASMRDAKKAVKSL--NGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccC--ccCCeeeEEEEEecChhhHHHHHHhc--ccceeccc
Confidence 347888888752222 1 35689999999999988876 34559999999999999999999999 999986 5
Q ss_pred eeeeeec
Q 003749 224 RVLTVKL 230 (798)
Q Consensus 224 ~~~~v~~ 230 (798)
+...|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 5555543
|
|
| >KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0047 Score=57.12 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=62.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee--ecceeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE--FHGRVLTV 228 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~--~~g~~~~v 228 (798)
.+.|||.||+..++.+.+++.|+.||+|....++.| ..|++.+=++|+|...-.+.+|...+...|.- ..+++.-|
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD--~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD--DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeec--ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 378999999999999999999999999998877776 45888899999999999999999877222222 23555555
Q ss_pred e
Q 003749 229 K 229 (798)
Q Consensus 229 ~ 229 (798)
.
T Consensus 109 e 109 (275)
T KOG0115|consen 109 E 109 (275)
T ss_pred C
Confidence 4
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.011 Score=45.91 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
+|+.+...|.+.|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555443
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.18 Score=52.25 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=34.2
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|+..+++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666666666666666665555 2332 2355555555555555555555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.04 Score=49.14 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 003749 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTY 754 (798)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~ 754 (798)
....++..+...|++++|..+++.+...+ +-|...|..+|.+|...|+..+|+++|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 55667777888888888888888888776 66777888889999999998888888888753 4888887664
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.092 Score=53.01 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
+.+++.+.-+|.+.+++.+|++..++.++.+ +.|+....--..+|...|+++.|+..|+++++..+. |..+-..|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3456778888888899999999888888875 447788888888888899999999999998887433 45555555555
Q ss_pred HHhcCChHH-HHHHHHHHHH
Q 003749 411 QCQTRNMER-AEALVRDMEE 429 (798)
Q Consensus 411 ~~~~g~~~~-A~~~~~~m~~ 429 (798)
--+.....+ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444444433 3566666665
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.8 Score=43.13 Aligned_cols=131 Identities=15% Similarity=0.069 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC---CHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRAR--GIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-GIEM---SLVT 368 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~~---~~~~ 368 (798)
+|..+..+.++.|.+++++..--.-+.. .... -...|..+.+++-+.-++.+++..-..-... |..+ --..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4556667777777766655432221111 0000 1123444444444444444444444333321 1111 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
..++..++...+.++++++.|+...+.- ......++..|...|.+..++++|.-...+..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 3455666666677777777777665431 12223455666666666666666665554443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.49 Score=49.32 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 003749 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLE-LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNT-FVYNILIDGWA 727 (798)
Q Consensus 650 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 727 (798)
..|..++.+.|+.++|++.|++|++.... -+..+...|+.++...+++.++..++.+..+...+.+. .+|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44666667788888888888888754322 23446677888888888888888888776554433333 24554433332
Q ss_pred HcCC---------------HHHHHHHHHHHHHc
Q 003749 728 RRGD---------------VWEAADLMQQMKQE 745 (798)
Q Consensus 728 ~~g~---------------~~~A~~~~~~m~~~ 745 (798)
..|+ ...|++.+.+..+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 2222 13456677776663
|
The molecular function of this protein is uncertain. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.014 Score=45.35 Aligned_cols=61 Identities=23% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 683 TYEALLKACCKSGRMQSALAVTKEMSAQ----KI-PRN-TFVYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
+|+.+..+|...|++++|+..+++..+. +- .++ ..+++.++.+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555555421 10 011 3356666666777777777777666654
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.12 Score=54.83 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=104.5
Q ss_pred HHHHccCChHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003749 339 HAYAVGRDMEEALSCVR--KMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~~~--~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (798)
+...-.++++++.++.+ ++... + ...-.+.++..+-+.|..+.|+.+-..-.. -.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCC
Confidence 44455688888777664 22211 1 244588899999999999999987654432 2455678899
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 417 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (798)
++.|.++.+++ .+...|..|.+....+|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 99998877543 2567899999999999999999999987643 56777888889998888888877
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 497 MKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 497 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
....|- ++....++.-.|++++..+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 776642 44455555667887777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0083 Score=59.30 Aligned_cols=75 Identities=19% Similarity=0.334 Sum_probs=59.5
Q ss_pred ceeecCCCccCchHHHHHHhccc--CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee-ecceeeeee
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FHGRVLTVK 229 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~-~~g~~~~v~ 229 (798)
.+|+|||++.++..+|+.+|... |--.. .+++ .||+||+..+..-|.+|++.+ +|.. +.|+++.|.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~-fl~k--------~gyafvd~pdq~wa~kaie~~--sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQ-FLVK--------SGYAFVDCPDQQWANKAIETL--SGKVELQGKRQEVE 71 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcc-eeee--------cceeeccCCchhhhhhhHHhh--chhhhhcCceeecc
Confidence 78999999999999999999753 21112 2222 589999999999999999998 7755 889999998
Q ss_pred cccccchhh
Q 003749 230 LDDGRRLKN 238 (798)
Q Consensus 230 ~~~~~~~~~ 238 (798)
..-++....
T Consensus 72 ~sv~kkqrs 80 (584)
T KOG2193|consen 72 HSVPKKQRS 80 (584)
T ss_pred chhhHHHHh
Confidence 886665443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.95 E-value=2 Score=42.80 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECG-----FSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
.|..++...+.++++++.|+...+.. ......+|-.|...|.+..++++|.-+..+.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhH
Confidence 34455555555666666665554321 1112345556666666666666665544443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.94 E-value=4.1 Score=46.21 Aligned_cols=165 Identities=11% Similarity=0.052 Sum_probs=72.3
Q ss_pred hhHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCC--H
Q 003749 297 REFGLMVNYYA-RRGDMHRARQTFENMRARGIEPTLH-----VYTNLIHAYAVGRDMEEALSCVRKMKEE--GIEMS--L 366 (798)
Q Consensus 297 ~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~--~ 366 (798)
.++-.+...|. ...++++|...+++.+...-.++.. ....++..|.+.+... |+..+++.++. +..-. .
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34445555555 4566777777777665432122211 1223344454444444 66666665542 10001 1
Q ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHHcCC--------
Q 003749 367 VTYSII-VGGFAKMGNAEAADHWFEEAKERH---ATLNAIIYGNIIYAQ--CQTRNMERAEALVRDMEEEGI-------- 432 (798)
Q Consensus 367 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~-------- 432 (798)
..+..+ +..+...+++..|++.++.+...- ..+-..++..++.+. ...+..+++.+.+.++.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 111122 222222356677777766665432 111222233333332 234444555555555433211
Q ss_pred -CCChhhHHHHHHHH--HhcCCHHHHHHHHHHH
Q 003749 433 -DAPIDIYHMMMDGY--TIIGNEEKCLIVFERL 462 (798)
Q Consensus 433 -~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~ 462 (798)
.+...+|..+++.+ ...|+++.+...++++
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12344555555443 3445555555444444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.089 Score=54.45 Aligned_cols=68 Identities=10% Similarity=-0.024 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 643 SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV--FTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 643 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
+.+...|+.+..+|...|++++|+..|++.++....... .+|..+..+|.+.|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678888999999999999999999998887544221 45888889999999999999999988874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.06 Score=56.58 Aligned_cols=149 Identities=17% Similarity=0.109 Sum_probs=80.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
-.|+++.|-.++..+.+ ...+.+++.+-+.|..++|+++- +|..- -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 34556655554443332 23455666666666666666542 12211 1223345666776666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
+..+.. +..-|..|..+..+.+++..|.+.|.+..+ |..|+-.|...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 555442 455666777777777777777777766544 33455556666665544444444443332
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 496 (798)
.|....+|...|+++++++++..
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHh
Confidence 22333456666777777666544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1 Score=42.29 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI 448 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 448 (798)
|.....+|....++++|...+.+..+- .+.|...|- ..+-++.|.-+.++|.+.. .-+..|.--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 444445565666666666666655431 111221111 1122334444444443321 112333444455666
Q ss_pred cCCHHHHHHHHHHH
Q 003749 449 IGNEEKCLIVFERL 462 (798)
Q Consensus 449 ~g~~~~A~~~~~~~ 462 (798)
+|..+.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 66655555555443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.80 E-value=4 Score=51.12 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=20.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
....|+++.|...|+.+...+.. ....+..++......|.+....-
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~ 1504 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEIL 1504 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHh
Confidence 34455555555555555544221 23334444444344444444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.70 E-value=5 Score=45.46 Aligned_cols=188 Identities=13% Similarity=0.047 Sum_probs=90.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-C-----CHHHHHHHHH--HHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 003749 588 RAGEMKRALEIFDMMRRSGCI-P-----TVHTFNALIL--GLVEKRQMEKAIEILD--------EMTLAGISPNEHTYTT 651 (798)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~-p-----~~~~~~~li~--~~~~~~~~~~A~~~~~--------~m~~~~~~p~~~t~~~ 651 (798)
-.+++..+...+..+...... + ....+..++. .+-..|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 467888899988888754211 1 1222222222 2345799999999997 3444443334333322
Q ss_pred --HHHHHHhcC--ChHH--HHHHHHHHHHc---CCCCCHHHHHHH-HHHHHHcC--ChHHHHHHHHHHHh-C--CCCCC-
Q 003749 652 --IMHGYASLG--DTGK--AFEYFTKLRNE---GLELDVFTYEAL-LKACCKSG--RMQSALAVTKEMSA-Q--KIPRN- 715 (798)
Q Consensus 652 --li~~~~~~g--~~~~--A~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~g--~~~~A~~~~~~~~~-~--~~~~~- 715 (798)
++..+...+ +.++ +.++++.+... ....+..++..+ +.++.... ...++...+.+..+ . ....+
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 112222222 2223 66666666432 112233333333 33343222 22344444433321 1 11111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC--CHHHHHHH-----HHHHHHcCCcccccccccc
Q 003749 716 --TFVYNILIDGWARRGDVWEAADLMQQMKQE-GVQP--DVHTYTSF-----INACSKAGDMQVRFSIPML 776 (798)
Q Consensus 716 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p--d~~~~~~l-----~~~~~~~g~~~~a~~~~~~ 776 (798)
..+++.|...+. .|+..|..+........ .-.+ ....|..+ .+.+...|+.++|.++...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~ 602 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQ 602 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 123454555555 78877766554443221 1112 34456333 3457777998888777543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.2 Score=48.13 Aligned_cols=87 Identities=13% Similarity=0.049 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChHH
Q 003749 344 GRDMEEALSCVRKMKEEGIE--MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAIIYGNIIYAQCQTRNMER 419 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 419 (798)
.|++.+|...|...++.... .....+..|..++...|++++|..+|..+.+.-.. .-..++..|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 34455555555554443110 11223444555555555555555555555443211 112344444444445555555
Q ss_pred HHHHHHHHHHc
Q 003749 420 AEALVRDMEEE 430 (798)
Q Consensus 420 A~~~~~~m~~~ 430 (798)
|...|++++++
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.3 Score=43.11 Aligned_cols=150 Identities=6% Similarity=-0.032 Sum_probs=101.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
.......|++.+|..+|....... .-+...-..++.+|...|+.+.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 445678999999999999999874 3345677788999999999999999999886542111122212234444444444
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHH
Q 003749 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
.+...+-.+.-.. +-|...-..+...|...|+.++|.+.+-.+.+++. ..|-..-..|+..+...|..+.+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444444332 33777888899999999999999998888877642 22345556666666666644433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.67 Score=40.83 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=19.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
.+|..+.+.+.......+++.+...+. .+....|.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444445555555555444432 334444444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.6 Score=42.35 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHH
Q 003749 524 NVFAVFEDVMRDGLKPDVVLY 544 (798)
Q Consensus 524 ~a~~~~~~~~~~g~~~~~~~~ 544 (798)
.+.++++.+.+.|++.....|
T Consensus 200 r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred HHHHHHHHHHHcCCccccccc
Confidence 344444444444444433333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.35 Score=41.34 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcC
Q 003749 642 ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE-GLELDVFTYEALLKACCKSG 695 (798)
Q Consensus 642 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 695 (798)
..|+..+..+++.+|+..+++..|+++++...+. ++..+..+|..|++-+...-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4566666666666666666666666666666543 55555666666665554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.4 Score=46.04 Aligned_cols=112 Identities=11% Similarity=0.055 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003749 626 QMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTK 705 (798)
Q Consensus 626 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (798)
...+|.++-++..+.+ .-|......+..++...++++.|..+|++....+.. ...+|......++-+|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456666777777665 566677777777777777788888888888776543 45666666777777888888888888
Q ss_pred HHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 706 EMSAQKIPRNT---FVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 706 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
+..+.+ |.. .+.-..++.|+.+ ..++|++++-+-
T Consensus 397 ~alrLs--P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 397 KSLQLE--PRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHhccC--chhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 876654 322 2333334455544 456677666543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.47 Score=40.98 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=27.1
Q ss_pred ccCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003749 343 VGRDMEEALSCVRKMKEEGIE---MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (798)
+.|++++|.+.|+.+..+ ++ -...+...|+.+|.+.+++++|+..+++.++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 445555555555555443 11 1223344455555555555555555555555543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.37 E-value=1 Score=39.68 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=57.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 617 LILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR 696 (798)
Q Consensus 617 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 696 (798)
++..+.+.+.......+++.+...+ ..+...++.++..|++.+. .+..+.++. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3444444445555555555555443 2344455555555554422 233333331 0122233445555666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 697 MQSALAVTKEMSAQKIPRNTFVYNILIDGWARR-GDVWEAADLMQQMKQEGVQPDVHTYTSFINACS 762 (798)
Q Consensus 697 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 762 (798)
++++..++.++.. |...+..+... ++.+.|++++++- -|...|..++..|.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6666666654432 11122222223 5666666666541 25556666666554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.4 Score=37.00 Aligned_cols=60 Identities=8% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.+..+...|+-++-.+++.++.+.+ .++......+..+|.+.|+..++.+++.+.-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445555566665555555555422 34445555555555555555555555555555443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=4.3 Score=42.52 Aligned_cols=240 Identities=9% Similarity=0.113 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHcCCCh-HH
Q 003749 489 KALEVSKVMKSSGIKHNMKTYSMLINGFLKL------KDWANVFAVFEDVMRDG-LKP-DVVLYNNIIRAFCGMGNM-DR 559 (798)
Q Consensus 489 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~~~~~g~~-~~ 559 (798)
....+|+...+. -++...|+..|..|... ..+...+.+|+...+.+ ..+ ....|..+.-.++....- +-
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334566666553 34555666666555432 24455556666655543 222 334566666666555543 33
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHH--HHHH
Q 003749 560 AIHIVKEMQKERHRPTSRTFMPIIHGFARAG-EMK-RALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ-MEKA--IEIL 634 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~-~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~~A--~~~~ 634 (798)
|..+..+... -+...|..-+....+.. ++. .-..+|......-+.+....|+... .++ .... ..++
T Consensus 378 a~~l~~e~f~----~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 378 AVKLTTELFR----DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HHHhhHHHhc----chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 3444433332 24555555554444332 221 1123333343332223344444443 111 1111 1122
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHh-
Q 003749 635 DEMTLAGISPNEHTY-TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC---KSGRMQSALAVTKEMSA- 709 (798)
Q Consensus 635 ~~m~~~~~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~- 709 (798)
...... ..++..|+ +.+++.+.+.|-..+|...++.+.... .+....|..+|..-. .+ ++..+..+++.|..
T Consensus 449 ~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc-~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 449 SALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESC-NLANIREYYDRALRE 525 (568)
T ss_pred HHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhc-CchHHHHHHHHHHHH
Confidence 222222 24555554 456677777888888888888887763 356667766665432 23 36777777777764
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 710 QKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 710 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.| .|...|...+.-=...|+.+.+-.++.+...
T Consensus 526 fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 526 FG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 34 6777776666655577777777766666543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.33 E-value=6.1 Score=44.05 Aligned_cols=143 Identities=17% Similarity=0.105 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HccCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhc
Q 003749 312 MHRARQTFENMRARGIEPTLHVYTNLIHAY-----AVGRDMEEALSCVRKMKE-------EGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~l~~~~~~~ 379 (798)
...|.++++...+.| +......+..+| ....|.+.|+.+|+.+.+ .| ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888776 444444444333 345688888888888876 43 333455566666653
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----
Q 003749 380 G-----NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ---TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT---- 447 (798)
Q Consensus 380 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~---- 447 (798)
. +.+.|+.+|.+.-..|.. +. -..+...|.. ..+..+|.++|....+.|. ...+..+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 2 455677777776665432 22 2222222221 1345666666666666652 233333333332
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 003749 448 IIGNEEKCLIVFERLKECG 466 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~ 466 (798)
...+...|..++.+..+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 2234556666666665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.53 Score=46.14 Aligned_cols=155 Identities=8% Similarity=-0.038 Sum_probs=92.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHH--HHHHHHHhcCCh
Q 003749 587 ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH--TYT--TIMHGYASLGDT 662 (798)
Q Consensus 587 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--t~~--~li~~~~~~g~~ 662 (798)
.-.|++.+|-..++++.+.- ..|...++..-.+|.-+|+.+.-...+++++..- .++.. +|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 34566666666677766543 3366677777777777777777777777766441 23332 222 222344567778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ---KIPRNTFVYNILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 663 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 739 (798)
++|.+.-++..+.+. .|.-...++...+-..|++.++.++..+-... +.-.-...|....-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888877777777653 36666677777777777888877776654421 10001122333444445567777788777
Q ss_pred HHHHH
Q 003749 740 QQMKQ 744 (798)
Q Consensus 740 ~~m~~ 744 (798)
+.=+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 76443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.23 E-value=3.8 Score=41.13 Aligned_cols=130 Identities=18% Similarity=0.301 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----ChHHHHHHHHHHHHCCCC---CCcccHHHHHHHHHhcCC-
Q 003749 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG--MG----NMDRAIHIVKEMQKERHR---PTSRTFMPIIHGFARAGE- 591 (798)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~- 591 (798)
+++.+.+++.|.+.|+..+..+|-+....... .. ...+|..+|+.|.+.... .+...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556667777777776666555443222222 12 244567777777766432 233344444332 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003749 592 ---MKRALEIFDMMRRSGCIPT--VHTFNALILGLVEKRQ--MEKAIEILDEMTLAGISPNEHTYTTIM 653 (798)
Q Consensus 592 ---~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~t~~~li 653 (798)
.+.++.+|+.+.+.|+..+ ....+.++..+..... ..++.++++.+.+.+++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2455556666666554432 1222222222111111 335566666666666666655555554
|
|
| >KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.03 Score=54.63 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=69.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.+..+.|.+|...++|.+|.+..+.||.|..|..+.. +-.+.|+|++.+.|..++.....|...+.|+.-.++
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-------cceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 3448999999999999999999999999999988765 568999999999999998877778888899888887
Q ss_pred cccccchhh
Q 003749 230 LDDGRRLKN 238 (798)
Q Consensus 230 ~~~~~~~~~ 238 (798)
++.+..+.+
T Consensus 103 yStsq~i~R 111 (494)
T KOG1456|consen 103 YSTSQCIER 111 (494)
T ss_pred cchhhhhcc
Confidence 776554443
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.11 Score=57.89 Aligned_cols=9 Identities=22% Similarity=0.408 Sum_probs=4.3
Q ss_pred cceeeeeec
Q 003749 222 HGRVLTVKL 230 (798)
Q Consensus 222 ~g~~~~v~~ 230 (798)
-|+.+.|..
T Consensus 533 ~g~~~~v~c 541 (585)
T PRK14950 533 VGKTCAVRC 541 (585)
T ss_pred hCCceEEEE
Confidence 355555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.4 Score=39.98 Aligned_cols=94 Identities=23% Similarity=0.183 Sum_probs=62.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKM 379 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~ 379 (798)
..+++..|+++.|++.|.+.+.. .+-....||.-..++--.|+.++|++-+++.++..-.-. ...|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34566778888888888887776 234667788888888888888888888877776421211 12244445556667
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 003749 380 GNAEAADHWFEEAKERHA 397 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~ 397 (798)
|+.+.|+.-|+..-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777777777666553
|
|
| >KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.025 Score=62.03 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=70.2
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec--ce
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GR 224 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~--g~ 224 (798)
.....+.+|||+|+.++....|...|..||.|..|.+-.. .-|++|.|++...++.|...| -|..|+ .+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-------q~yayi~yes~~~aq~a~~~~--rgap~G~P~~ 521 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-------QPYAYIQYESPPAAQAATHDM--RGAPLGGPPR 521 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-------CcceeeecccCccchhhHHHH--hcCcCCCCCc
Confidence 4566779999999999999999999999999999877443 569999999999999999999 899987 46
Q ss_pred eeeeecccccchh
Q 003749 225 VLTVKLDDGRRLK 237 (798)
Q Consensus 225 ~~~v~~~~~~~~~ 237 (798)
++.|.++....-.
T Consensus 522 r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 522 RLRVDLASPPGAT 534 (975)
T ss_pred ccccccccCCCCC
Confidence 6888888766443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.79 Score=38.32 Aligned_cols=92 Identities=16% Similarity=0.022 Sum_probs=57.8
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcC
Q 003749 339 HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA---IIYGNIIYAQCQTR 415 (798)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 415 (798)
.+++..|++++|++.|.+.+.. .+-+...||.-..++.-.|+.++|++-+++..+....-.. ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4566778888888888777765 2346777888888888888888888777777664221111 22333334455556
Q ss_pred ChHHHHHHHHHHHHcC
Q 003749 416 NMERAEALVRDMEEEG 431 (798)
Q Consensus 416 ~~~~A~~~~~~m~~~~ 431 (798)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.89 E-value=2.4 Score=44.51 Aligned_cols=148 Identities=11% Similarity=0.148 Sum_probs=75.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (798)
+|...=+..+.+.-+++-.++.+. .||- ..|..|.. -....+.+|.++|++..+.|- ..+ .+..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASL-------GKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhh-------chhh
Confidence 333334555566666666666654 2222 22222211 123456778888877766430 000 0000
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 381 NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID-APIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
.....-..++.+..++..+-..+-..+..++.+.|+.++|.+.+++|.+.... ....+...|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00010111122222222222333344666666778888888888887764322 23446667777788888888887777
Q ss_pred HHHHH
Q 003749 460 ERLKE 464 (798)
Q Consensus 460 ~~~~~ 464 (798)
.+..+
T Consensus 319 ~kYdD 323 (539)
T PF04184_consen 319 AKYDD 323 (539)
T ss_pred HHhcc
Confidence 77644
|
The molecular function of this protein is uncertain. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.04 Score=34.39 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=29.5
Q ss_pred HHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHH
Q 003749 270 FRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ 317 (798)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (798)
|+++++.+|. +...|+.|...|...|++++|++
T Consensus 2 y~kAie~~P~---------------n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPN---------------NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCC---------------CHHHHHHHHHHHHHCcCHHhhcC
Confidence 7889999998 78889999999999999999863
|
|
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.026 Score=55.21 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=62.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCc-c--eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGP-I--KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~-v--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..|=..+||+..+.++|-.+|..|-. | ..|.++.+ ..|++.|=|||+|.+.+.|..|.... +++..++|-|.|
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N--~qGrPSGeAFIqm~nae~a~aaaqk~--hk~~mk~RYiEv 356 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN--GQGRPSGEAFIQMRNAERARAAAQKC--HKKLMKSRYIEV 356 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc--CCCCcChhhhhhhhhhHHHHHHHHHH--HHhhcccceEEE
Confidence 36778999999999999999998853 3 24777764 78999999999999999999999887 777777888877
Q ss_pred ecc
Q 003749 229 KLD 231 (798)
Q Consensus 229 ~~~ 231 (798)
--+
T Consensus 357 fp~ 359 (508)
T KOG1365|consen 357 FPC 359 (508)
T ss_pred eec
Confidence 444
|
|
| >KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.012 Score=54.69 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=49.2
Q ss_pred HHHHHhc-ccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 167 LVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 167 ~l~~~f~-~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++...|+ +||+|+++.|-.+ ..-.-.|=++|.|...++|.+|+..| |+..+.|++|..++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~N--l~~hl~GNVYV~f~~Ee~ae~a~~~l--nnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN--LGDHLVGNVYVKFRSEEDAEAALEDL--NNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc--cchhhhhhhhhhcccHHHHHHHHHHH--cCccccCCcceeeec
Confidence 4444445 9999999977653 22233788999999999999999999 999999999988775
|
|
| >PRK15319 AIDA autotransporter-like protein ShdA; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.049 Score=65.05 Aligned_cols=7 Identities=14% Similarity=0.259 Sum_probs=2.9
Q ss_pred CCeeecc
Q 003749 217 DGVEFHG 223 (798)
Q Consensus 217 ~~~~~~g 223 (798)
+|.++++
T Consensus 1858 sG~YVDs 1864 (2039)
T PRK15319 1858 SGAYVDS 1864 (2039)
T ss_pred cceEEEE
Confidence 3444443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=6.4 Score=41.34 Aligned_cols=180 Identities=9% Similarity=0.102 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (798)
Q Consensus 540 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 619 (798)
|.....+++..+..+-.+.-...+..+|...|- +-..+..++.+|..+ .-+.-..+++++.+..+. |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 445556677777777777777777777777652 445667777777776 556667777777776553 4444445554
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Q 003749 620 GLVEKRQMEKAIEILDEMTLAGISP-----NEHTYTTIMHGYASLGDTGKAFEYFTKLRNE-GLELDVFTYEALLKACCK 693 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~p-----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 693 (798)
-|.+ ++.+.+..+|.++...-+.. -...|.-|.... ..+.+..+.+..++... |..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 77777777777766442211 112444444211 24466666666666533 444445566666677778
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003749 694 SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA 727 (798)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (798)
..++++|++++..+.+.+ ..|...-..++..+.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 888888888888887765 455555555665554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.86 Score=39.40 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=61.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSII 372 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 372 (798)
+...+..-.....+.|++++|++.|+.+..+-. .-...+...++.+|.+.+++++|+..+++.++....--..-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 334444555667789999999999999998711 224456778899999999999999999999997533223445555
Q ss_pred HHHHHhc
Q 003749 373 VGGFAKM 379 (798)
Q Consensus 373 ~~~~~~~ 379 (798)
+.+++..
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.01 Score=64.93 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=68.2
Q ss_pred hhhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 144 ~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
..++...+.+||+|||+..+++.+|+..|..+|.|.+|+|-+-+..++ .-|+||.|.+...+-+|...+ .+..|..
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~e--sa~~f~~~~n~dmtp~ak~e~--s~~~I~~ 440 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTE--SAYAFVSLLNTDMTPSAKFEE--SGPLIGN 440 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcc--cchhhhhhhccccCcccchhh--cCCcccc
Confidence 455667778999999999999999999999999999999866422222 459999999999999999887 7777765
Q ss_pred eeeeeecc
Q 003749 224 RVLTVKLD 231 (798)
Q Consensus 224 ~~~~v~~~ 231 (798)
..+++.+.
T Consensus 441 g~~r~glG 448 (975)
T KOG0112|consen 441 GTHRIGLG 448 (975)
T ss_pred Cccccccc
Confidence 56665554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.75 Score=44.30 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTYSIIV 373 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~ 373 (798)
.|+.-+.. .+.|++.+|...|...++..- .-....+..|..++...|++++|..+|..+.+.-. +--...+..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554444 478889999999999998731 11233567788999999999999999999987521 12357888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003749 374 GGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.+..+.|+.++|..+|++++++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999887
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.45 E-value=7.7 Score=43.79 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=12.4
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003749 477 LINLYTKIGKVSKALEVSKV 496 (798)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~ 496 (798)
....+.-.|+++.|++.+-.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 34555667777777777655
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.092 Score=45.98 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=56.6
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
+...+|.|.+||...+..+|+++..+.|.|-...+.+| |++.|+|...++.+-|+..| ....+.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--------g~GvV~~~r~eDMkYAvr~l--d~~~~~ 176 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--------GVGVVEYLRKEDMKYAVRKL--DDQKFR 176 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--------cceeeeeeehhhHHHHHHhh--cccccc
Confidence 34458999999999999999999999999999999887 79999999999999999998 555543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.4 Score=37.64 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=49.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCChH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSL-VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAI---IYGNIIYAQCQTRNME 418 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 418 (798)
+.+..++|+.-|..+.+.|...-. ....-+.......|+-..|...|+++-.....|-.. .-..-...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 344555555555555555433111 111222233445555555555555554432222111 1111122233445555
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 419 RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 419 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
......+-+-..+.+.....--.|.-+-.+.|++.+|.++|..+.+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444443333222222223333334444444444444444443
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.23 Score=55.56 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=4.6
Q ss_pred eeecceeeeee
Q 003749 219 VEFHGRVLTVK 229 (798)
Q Consensus 219 ~~~~g~~~~v~ 229 (798)
+.+.|+.+.+.
T Consensus 496 ~~~~~~~l~l~ 506 (585)
T PRK14950 496 VSVEKNTLTLS 506 (585)
T ss_pred eeecCCEEEEe
Confidence 33444444443
|
|
| >KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.04 Score=54.01 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=48.3
Q ss_pred ceeecCCCccCchHHHHHHhcc----cCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHh
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQ----FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~----~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 213 (798)
.|=..+||+++++.++.++|.. -|..+.|..++ +.+|+..|-|||.|+.++.|+.|+..
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEecCHHHHHHHHHH
Confidence 4556799999999999999963 23455666665 46799999999999999999999975
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.40 E-value=10 Score=42.21 Aligned_cols=177 Identities=14% Similarity=0.063 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhc
Q 003749 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGG-----FAKMGNAEAADHWFEEAKE-------RHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 414 (798)
..+|.+.++...+.| +......++.+ +....+.+.|+.+|..+.+ .+ +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888876 44443333333 4456788999999998876 33 334555666666654
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH----
Q 003749 415 R-----NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNEEKCLIVFERLKECGFSPSIISYGCLINLYT---- 482 (798)
Q Consensus 415 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---- 482 (798)
. +.+.|..++.+..+.|. + .....|...|..- .+...|.++|......|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~--~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-P--DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 3 55668888877777762 2 2333344444332 3566788888777776632 22222332222
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (798)
...+.+.|..++++.-+.| .+....-...+..+.. ++++.+...+..+.+.|.
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 2235677777777777765 2222222222333333 666666666555555443
|
|
| >KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.03 Score=58.30 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=71.9
Q ss_pred cccccceeecCCCccCchHHHHHHhc-ccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee---cc
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFR-QFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HG 223 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~---~g 223 (798)
......|||.||-.-.|.-.|+.++. .+|.|.+. .+| +-|..|||.|.+.+.|.+.+.+| ||+.. ++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD-----kIKShCyV~yss~eEA~atr~Al--hnV~WP~sNP 511 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD-----KIKSHCYVSYSSVEEAAATREAL--HNVQWPPSNP 511 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH-----HhhcceeEecccHHHHHHHHHHH--hccccCCCCC
Confidence 34567899999999999999999998 67788777 334 23789999999999999999999 99986 57
Q ss_pred eeeeeecccccchhhHHHHhhhhc--cCCC
Q 003749 224 RVLTVKLDDGRRLKNKAEVRARWV--AGNN 251 (798)
Q Consensus 224 ~~~~v~~~~~~~~~~~~~~~~~~~--~~~~ 251 (798)
+.|.+.|...-.+-+...-....+ |++.
T Consensus 512 K~L~adf~~~deld~hr~~led~~ae~~~e 541 (718)
T KOG2416|consen 512 KHLIADFVRADELDKHRNGLEDLEAELPKE 541 (718)
T ss_pred ceeEeeecchhHHHHHhccchhcccccccc
Confidence 888888876554443333333333 5544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=7.5 Score=40.37 Aligned_cols=132 Identities=11% Similarity=-0.008 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRA-RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
....-|.-....||...|.+-+....+ ..-.|+... .........|+|+.++..+....+. +.-...+...+++..
T Consensus 291 ~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 291 EITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 334445556678888777665444444 322344443 3334456679999999988665543 333566788899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID 433 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 433 (798)
.+.|++++|..+-+-|....++ +..+.....-..-..|-++++...++++...+.+
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 9999999999999888876554 3333333333344667889999999888876533
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.27 E-value=6.6 Score=39.35 Aligned_cols=20 Identities=10% Similarity=-0.037 Sum_probs=13.6
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~ 743 (798)
..+.+.+++++|.+.|+-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556788888888877543
|
It is also involved in sporulation []. |
| >KOG2068 consensus MOT2 transcription factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.022 Score=55.40 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=62.1
Q ss_pred cceeecCCCccCchHHH---HHHhcccCcceEEEEecCCCC-CCCCcc--eEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 152 GKIFVGNLPNWIKKHLV---MEFFRQFGPIKNVILIKGYNN-FEKNVG--FGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l---~~~f~~~g~v~~~~~~~~~~~-~~~~~g--~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
.-+||-+|+....++.+ .+.|.+||.|..|.+.++ .. ...+.| -++|+|+..+.|..||... +|+.++|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~-~S~~s~~~~~~s~yITy~~~eda~rci~~v--~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKD-PSSSSSSGGTCSVYITYEEEEDADRCIDDV--DGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCC-cccccCCCCCCcccccccchHhhhhHHHHh--hhHHhhhhh
Confidence 46788899887766654 368999999999999886 31 111111 3799999999999999999 999999999
Q ss_pred eeeeccccc
Q 003749 226 LTVKLDDGR 234 (798)
Q Consensus 226 ~~v~~~~~~ 234 (798)
++..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 887776554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.19 E-value=6.8 Score=39.25 Aligned_cols=122 Identities=12% Similarity=0.167 Sum_probs=61.5
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHccC-ChHHHHHHHHHHHHc----C----CCCC----
Q 003749 307 ARRGDMHRARQTFENMRARG--IEPTLH------VYTNLIHAYAVGR-DMEEALSCVRKMKEE----G----IEMS---- 365 (798)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~--~~~~~~------~~~~ll~~~~~~g-~~~~A~~~~~~m~~~----g----~~~~---- 365 (798)
.+.|+.+.|..++.++.... ..|+.. .||.-...+ +.+ ++++|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 36788888888888877643 122221 233333333 444 777777777665432 1 1111
Q ss_pred -HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 366 -LVTYSIIVGGFAKMGNAE---AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 366 -~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
..++..++.+|...+..+ +|.++++.+... ......++..-+.++.+.++.+++.+++.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234445555555554433 344444444322 1112334434445555556666666666666654
|
It is also involved in sporulation []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.35 Score=46.11 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 415 RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVS 494 (798)
Q Consensus 415 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (798)
+.++-....++.|.+.|+..|..+|+.|++.+-+-. +.|... +....--|-+ +-+-+++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv-fQ~~F~HYP~--QQ~C~I~vL 146 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV-FQKVFLHYPQ--QQNCAIKVL 146 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH-HHHHHhhCch--hhhHHHHHH
Confidence 455556666777888888888888887777653321 111111 1111111111 223456777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003749 495 KVMKSSGIKHNMKTYSMLINGFLKLKD 521 (798)
Q Consensus 495 ~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (798)
++|...|+.||-.+-.+|++++.+.+.
T Consensus 147 eqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 147 EQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHcCCCCchHHHHHHHHHhccccc
Confidence 777777777777777777777765543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.14 E-value=8.4 Score=40.09 Aligned_cols=160 Identities=10% Similarity=0.049 Sum_probs=86.7
Q ss_pred cchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003749 257 STWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTN 336 (798)
Q Consensus 257 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (798)
..|...+.++...|..+.... +-+.++..+.+.+- ...++-.+...|.+.|+.+.|-+++++++-.- ..+++.
T Consensus 4 f~hs~~Y~~~q~~F~~~v~~~--Dp~~l~~ll~~~Py-HidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~ 76 (360)
T PF04910_consen 4 FEHSKAYQEAQEQFYAAVQSH--DPNALINLLQKNPY-HIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHP 76 (360)
T ss_pred EeCCHHHHHHHHHHHHHHHcc--CHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHH
Confidence 345566788899998887653 33555555544332 34455566677889999999999888876420 011111
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYS---IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC- 412 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~- 412 (798)
....+.....-..+.--|. ..-|-..|. ..|..+.+.|.+..|+++.+-+...+..-|......+|..|+
T Consensus 77 ~F~~~~~~~~~g~~rL~~~------~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL 150 (360)
T PF04910_consen 77 SFSPFRSNLTSGNCRLDYR------RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYAL 150 (360)
T ss_pred HhhhhhcccccCccccCCc------cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence 1111000000000000000 001222222 234456677777777777777777666556666666666654
Q ss_pred hcCChHHHHHHHHHHHH
Q 003749 413 QTRNMERAEALVRDMEE 429 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~ 429 (798)
+.++++--+++.+....
T Consensus 151 rs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 151 RSRQYQWLIDFSESPLA 167 (360)
T ss_pred hcCCHHHHHHHHHhHhh
Confidence 66666666666665544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.91 E-value=5.3 Score=36.97 Aligned_cols=65 Identities=17% Similarity=0.041 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
..+||.|.--+...|+++.|.+.|+...+.+...+ .++.+-...+.-.|++.-|.+-|...-+.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 56788888888889999999999999888876533 333333344555788888888777776653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=4 Score=36.27 Aligned_cols=126 Identities=9% Similarity=0.061 Sum_probs=89.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLV---TYSIIVGGFAKMGN 381 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~l~~~~~~~g~ 381 (798)
+++.|..++|+.-|..+.+.|...-.. ....+....+..|+-.+|...|+++-.....|-.. ...--.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677889999999999886543222 22334456778899999999999987653333222 12222334667888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 382 AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
++....-.+-+...+.+.-...-..|..+-.+.|++..|...|..+....
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 99988888877766666666777788888889999999999999887643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.84 E-value=1 Score=43.09 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 486 KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL----------------KDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (798)
Q Consensus 486 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 549 (798)
..+-....++.|.+.|+..|..+|+.||+.+-+. .+-+-++.++++|...|+.||-.+-..|+.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444555555555555555555555544322 122346667777777777777777777777
Q ss_pred HHHcCCC
Q 003749 550 AFCGMGN 556 (798)
Q Consensus 550 ~~~~~g~ 556 (798)
++.+.+.
T Consensus 167 ~FGr~~~ 173 (406)
T KOG3941|consen 167 AFGRWNF 173 (406)
T ss_pred Hhccccc
Confidence 7766654
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.77 E-value=7.7 Score=39.98 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003749 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (798)
Q Consensus 649 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (798)
...|+.-|...|+..+|...++++---- -....++.+++.+.-+.|+-..-+.++++.-..| ..|-|.|-++|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 4456667777788888887777663221 1245667777777777777666666666666543 3455555555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.79 Score=44.90 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003749 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTYT 755 (798)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~ 755 (798)
..++..++..+..+|+++.+...++++.... +-+...|..|+.+|.+.|+...|+..|+++.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3466778888888899999999998888876 67888889999999999999999988888765 58888888888
Q ss_pred HHHHH
Q 003749 756 SFINA 760 (798)
Q Consensus 756 ~l~~~ 760 (798)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77777
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.49 E-value=6.7 Score=36.81 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=12.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCC
Q 003749 518 KLKDWANVFAVFEDVMRDGLK 538 (798)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~ 538 (798)
..+++.+|+.+|+++.+....
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445666666666666555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.23 Score=33.21 Aligned_cols=27 Identities=11% Similarity=0.369 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
|..+...|.+.|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.29 E-value=6.7 Score=38.10 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003749 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHTYT 755 (798)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~~~ 755 (798)
+++.....|.++|.+.+|..+.++....+ +.+...|-.|+..|+..||--.|.+-+++|.+ .|+.-|..+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 55667788999999999999999999877 67888899999999999998888888887753 47776665543
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.9 Score=52.51 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=4.2
Q ss_pred cCcceEEEEe
Q 003749 175 FGPIKNVILI 184 (798)
Q Consensus 175 ~g~v~~~~~~ 184 (798)
+|....|+.+
T Consensus 578 lG~~~~V~a~ 587 (824)
T PRK07764 578 LGGDWQVEAV 587 (824)
T ss_pred hCCceEEEEE
Confidence 3444444443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.06 E-value=2.4 Score=48.67 Aligned_cols=21 Identities=14% Similarity=0.138 Sum_probs=13.8
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 003749 303 VNYYARRGDMHRARQTFENMR 323 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~ 323 (798)
|..+.+.+++++|+++...|.
T Consensus 1004 la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1004 LAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHhhccHHHHHHHHHHHh
Confidence 444556677777777777666
|
|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.5 Score=48.44 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=3.8
Q ss_pred EEEeCCh
Q 003749 198 FVIYDGP 204 (798)
Q Consensus 198 fv~f~~~ 204 (798)
||+|.+.
T Consensus 231 FV~fid~ 237 (887)
T KOG1985|consen 231 FVEFIDQ 237 (887)
T ss_pred eEEecCC
Confidence 5666543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.94 E-value=22 Score=41.16 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHH---HHHHccCChHHHHHHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHV---YTNLI---HAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~ll---~~~~~~g~~~~A~~~~~~m~~ 359 (798)
+..=+..+.+...+++|+.+-+.....+ |...- +.... .-+..+|++++|+++|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 6666777888888888888877665431 22221 11111 225567889999999988865
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.94 E-value=19 Score=40.71 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=37.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-------HHHHHHHHHHHHc
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM-------EEALSCVRKMKEE 360 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-------~~A~~~~~~m~~~ 360 (798)
.+|-.|.+.|++++|.++....... +......+-..+..|+...+- +....-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4677788999999999999554443 344556677888888765222 3455556665544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.5 Score=40.28 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATL--NAIIYGNIIYAQCQTRNMERAEALVRDM 427 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 427 (798)
+..++..|++.|+.++|++.|.++.+....+ -...+..+|++....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444555555555555555544432211 1223344444444555555444444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN) | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.47 Score=36.03 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=39.8
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
..||+ .|.+....||.++|+.||.|. |..+.| .-|||...+.+.+..++..+
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--------TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--------TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--------TEEEEEECCCHHHHHHHHHH
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--------CcEEEEeecHHHHHHHHHHh
Confidence 45555 999999999999999999975 545544 47999999999999999887
|
; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.58 E-value=1 Score=47.92 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=91.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 003749 519 LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEI 598 (798)
Q Consensus 519 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 598 (798)
.++++.|..++..+. ....+.++..+.+.|..++|+.+-- |... -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~---------D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST---------DPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC---------Chhh---hhhhhhhcCcHHHHHHH
Confidence 455665555444332 2234456666677777777765432 1111 12234567788887777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 599 FDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE 678 (798)
Q Consensus 599 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 678 (798)
..+.. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 65542 566788888888888888888887766543 556666777777766555555555555533
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 679 LDVFTYEALLKACCKSGRMQSALAVTKEM 707 (798)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (798)
|...-+|...|+++++.+++.+-
T Consensus 725 ------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 ------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------chHHHHHHHcCCHHHHHHHHHhc
Confidence 33445677788888887777544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.52 E-value=13 Score=37.56 Aligned_cols=150 Identities=18% Similarity=0.126 Sum_probs=83.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----M 379 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~ 379 (798)
..+++..+...+......+ +......+...|.. ..+..+|+++|..+.+.| .......|..+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4556677777777776643 23444444444443 245777888888777765 34455556666665 3
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR-------NMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI---- 448 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~---- 448 (798)
.+..+|..+|+++.+.|...-..+...+...|..-. +...|...+.++...+ +......|..+|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 477788888888877765432222333443333321 2235666666665554 33344444444422
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 003749 449 IGNEEKCLIVFERLKECG 466 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~ 466 (798)
..+..+|..+|.+..+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 235556666666665554
|
|
| >PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.46 Score=36.18 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=35.7
Q ss_pred ccCchHHHHHHhcccCcc-----eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 161 NWIKKHLVMEFFRQFGPI-----KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 161 ~~~~~~~l~~~f~~~g~v-----~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
..++..+|..++..-+.| -.|+|.. .|.||+-.. +.+..++..| ++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---------~~S~vev~~-~~a~~v~~~l--~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD---------NFSFVEVPE-EVAEKVLEAL--NGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S---------S-EEEEE-T-T-HHHHHHHH--TT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee---------eEEEEEECH-HHHHHHHHHh--cCCCCCCeeEEEEEC
Confidence 356778888888766444 4667754 499999954 6889999999 999999999999864
|
; PDB: 2G0C_A 3MOJ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.41 Score=32.00 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=9.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003749 722 LIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 722 l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+..+|.+.|++++|.++|+++++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333444444444444444333
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.40 E-value=2.5 Score=48.47 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003749 327 IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (798)
Q Consensus 327 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 358 (798)
+.|.......-|..+.+.++|++|+.+...|.
T Consensus 993 LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 993 LSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred cChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 34444444444555566677777777777766
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.9 Score=38.38 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILI- 723 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~- 723 (798)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|..+...+++..+...+.++...--.........-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677788888888888888888888887654433 3455677788888888888888877776432111111111111
Q ss_pred ----HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 ----DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ----~~~~~~g~~~~A~~~~~~m~~ 744 (798)
-.+...|++.+|-++|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 123457889998888777653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.47 Score=43.41 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=47.0
Q ss_pred hHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC--Ceeecceeeeeeccccc
Q 003749 165 KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRVLTVKLDDGR 234 (798)
Q Consensus 165 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--~~~~~g~~~~v~~~~~~ 234 (798)
.+.|+++|..|+.+..+...+. -+-..|.|.+.+.|.+|...+ + +..+.|..+++.++..-
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s-------FrRi~v~f~~~~~A~~~r~~l--~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS-------FRRIRVVFESPESAQRARQLL--HWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT-------TTEEEEE-SSTTHHHHHHHTS--T--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC-------CCEEEEEeCCHHHHHHHHHHh--cccccccCCCceEEEEcccc
Confidence 4689999999999999988876 466889999999999999988 8 89999999999887443
|
Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.2 Score=31.22 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=18.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003749 705 KEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
++.++.+ +.|...|+.|..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444 556666666666666666666664
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=26 Score=39.74 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 520 KDWANVFAVFEDVMRDG-LKPD--VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 520 ~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
.+.+.|..++..+.... ...+ ..++..+.......+...++...+....... .+...+.-.+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 44466666666553322 1111 1223333333333222445555554433221 12233333344444666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 637 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (798)
..+..|....- -...-..-+..++...|+.++|..+|+.+
T Consensus 333 ~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 333 TWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665543211 12233333444545566666666666654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.79 E-value=3.6 Score=37.45 Aligned_cols=92 Identities=20% Similarity=0.154 Sum_probs=58.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTL------HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
.+-+..+|++++|..-|..++.. .|.. +.|..-..++.+.+.++.|++-..+.++.+.. ......--..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 34566788888888888888775 2222 23445556677777788887777777776421 222333334567
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 003749 377 AKMGNAEAADHWFEEAKERHA 397 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~ 397 (798)
-+..++++|++-|.++.+.++
T Consensus 179 ek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCc
Confidence 777777777777777776643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.6 Score=42.84 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHHH
Q 003749 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE-----CGFSPSIISYGCL 477 (798)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 477 (798)
++..++..+...|+++.+.+.+++++... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555566666666777777777766654 45566677777777777777777776666654 2555555544444
Q ss_pred HH
Q 003749 478 IN 479 (798)
Q Consensus 478 i~ 479 (798)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.70 E-value=8.6 Score=34.11 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=9.1
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 003749 691 CCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~ 709 (798)
+...|+|.+|+.+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 4444455555555554443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=2.8 Score=41.01 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003749 610 TVHTFNALILGLVEKRQMEKAIEILDEMTLAG---IS--PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTY 684 (798)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 684 (798)
...+...++..-....+.++++.++-++.... .. ...++|-.++ . .-+.++++.++..=+..|+-+|.+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll---l-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL---L-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH---H-ccChHHHHHHHhCcchhccccchhhH
Confidence 33444455554455666777777666655431 11 1222322222 2 23456777777666677777777777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 685 EALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
+.||+.+.+.+++.+|..+.-.|+..+
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 777777777777777777666665443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.65 E-value=9.7 Score=39.83 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (798)
.+||+=+ .|...|+.-.|.+.|.+.... +.-+...|-.|..+|.
T Consensus 337 ilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 337 ILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 3455443 566778888888888877764 3457778888888775
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.42 Score=30.23 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEA 392 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~ 392 (798)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
|
|
| >KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.31 Score=48.27 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=58.1
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCC--CcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK--NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.|-|.||.+.++.+.++.+|.-.|.|.++++......... ..-.|||-|.|...+..|-.. .++.+-++.|.|-.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL---tntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL---TNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh---ccceeeeeeEEEEe
Confidence 7899999999999999999999999999988753111111 145899999999999888753 45666666666644
|
|
| >PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.86 Score=32.81 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=43.1
Q ss_pred cceeecCCCccCchHHHHHHhccc---CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQF---GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
.+|+|.++. +.+-++++.+|..| .....|..+-| .-|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD--------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD--------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC--------CcEEEEECCHHHHHHHHHcC
Confidence 378999985 57888999999988 23457888876 24678999999999999764
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.35 E-value=21 Score=37.48 Aligned_cols=175 Identities=15% Similarity=0.107 Sum_probs=97.2
Q ss_pred HcCCChHHHHHHHHHHHHCCCC-CC-------cccHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 003749 552 CGMGNMDRAIHIVKEMQKERHR-PT-------SRTFMPIIHG-FARAGEMKRALEIFDMMRRSGCIPTVHTF--NALILG 620 (798)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~-~~-------~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~li~~ 620 (798)
.-.|+..+|++-+.+|...... |. ......++.. +...+.++.|+.-|..+.+.-..-|...+ ..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 3468999999999888764321 22 1111223333 34568899999988877654222233332 334557
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH------H--HH--HHHhcCChHHHHHHHHHHHHcCCC-----CCHHHHH
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNEHTYTT------I--MH--GYASLGDTGKAFEYFTKLRNEGLE-----LDVFTYE 685 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~------l--i~--~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~ 685 (798)
|.+.++.+.-.++++.+-- ++..++.. + +. .....+++.+|..++.+..+..-. .......
T Consensus 414 YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 8888887777777665432 22222211 1 11 124678999999999888765311 1222334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh--CCCCCCHHH--H--HHHHHHHHHcCC
Q 003749 686 ALLKACCKSGRMQSALAVTKEMSA--QKIPRNTFV--Y--NILIDGWARRGD 731 (798)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~--~--~~l~~~~~~~g~ 731 (798)
.|...+.-.|+-.++.....-... .+ -+|..+ | ..+-+.|...|+
T Consensus 490 LLs~v~lslgn~~es~nmvrpamqlAkK-i~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQLAKK-IPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHHHHhc-CCCchHHHHHHHHHHHHHHHhCc
Confidence 444555677777777776654432 22 244432 2 334444555565
|
|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.32 E-value=4.8 Score=44.82 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=3.5
Q ss_pred ceeeeeec
Q 003749 223 GRVLTVKL 230 (798)
Q Consensus 223 g~~~~v~~ 230 (798)
||+=++++
T Consensus 238 gr~WrCNl 245 (887)
T KOG1985|consen 238 GRRWRCNL 245 (887)
T ss_pred Cceeeech
Confidence 44444433
|
|
| >PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP) | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.4 Score=41.68 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=6.5
Q ss_pred ccceeecCCCc
Q 003749 151 EGKIFVGNLPN 161 (798)
Q Consensus 151 ~~~~~v~nl~~ 161 (798)
.++|.+|.|..
T Consensus 161 dt~v~lgrld~ 171 (297)
T PF07174_consen 161 DTSVVLGRLDL 171 (297)
T ss_pred CceEEeccccc
Confidence 34666666654
|
Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.28 E-value=14 Score=35.38 Aligned_cols=232 Identities=10% Similarity=0.110 Sum_probs=0.0
Q ss_pred HcCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHC----
Q 003749 429 EEGIDAPIDIYHMMMDGY-TIIGNEEKCLIVFERLKECGFSPSIISYGCL---INLYTKIGKVSKALEVSKVMKSS---- 500 (798)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~---- 500 (798)
+.+-+||+..-|..-..- .+..+.++|+.-|.+.++........-|.+| |..+.+.|++++..+.++++...
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 003749 501 -GIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD-----GLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (798)
Q Consensus 501 -~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (798)
--..+..+.|.+++.....++.+-....|+.-++. +-..---|-..|...|...+.+.+..++++++......-
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Q ss_pred Cc-----------ccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHH
Q 003749 575 TS-----------RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL-----GLVEKRQMEKAIEILDEMT 638 (798)
Q Consensus 575 ~~-----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~-----~~~~~~~~~~A~~~~~~m~ 638 (798)
+. ..|..-|..|....+-.+...++++.+......-....--+|. +..+.|++++|..-|-+.-
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Q ss_pred HC------CCCCCHHHHHHHHHHHHhcC
Q 003749 639 LA------GISPNEHTYTTIMHGYASLG 660 (798)
Q Consensus 639 ~~------~~~p~~~t~~~li~~~~~~g 660 (798)
+. .-+..-.-|-.|...+.+.|
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcC
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.18 E-value=55 Score=41.93 Aligned_cols=320 Identities=12% Similarity=0.068 Sum_probs=169.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDM----EEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLY 481 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 481 (798)
.+..+-.+++.+.+|...++.- .+.. .....+..+...|...++.+....+...-.. +.. ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHH
Confidence 4555666788888888888873 2221 1233455555689999999888777764221 122 22345566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHcCCChHHH
Q 003749 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI-IRAFCGMGNMDRA 560 (798)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A 560 (798)
...|++..|...|+.+...+ ++...+++-++......+.++.++...+..... .......++++ +.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 77899999999999998864 233556676666666677777777766555443 22233333333 3444677777777
Q ss_pred HHHHHHHHHCCCCCCcccHHHH--HHHHHhcC--CHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCCH
Q 003749 561 IHIVKEMQKERHRPTSRTFMPI--IHGFARAG--EMKRALEIFDMMRRSGCI---------PTVHTFNALILGLVEKRQM 627 (798)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~--~~~~a~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~~~~ 627 (798)
...+. .. +..+|... +..+.+.. +.-.-.+..+.+++.-+. --...|..++..+....-
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el- 1609 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL- 1609 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-
Confidence 76665 11 23333332 22322222 211111233222221111 011233333332222111
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-Hc----CCC-CCHHHHHHHHHHHHHcCChHHH
Q 003749 628 EKAIEILDEMT-LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLR-NE----GLE-LDVFTYEALLKACCKSGRMQSA 700 (798)
Q Consensus 628 ~~A~~~~~~m~-~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~-~~~~~~~~l~~~~~~~g~~~~A 700 (798)
+...+.+.... .....-+...|..-+..-....+..+-+-.+++.. .. +.+ --...|....+...+.|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11111111100 00111122233333322222222233222222222 11 221 1245677777788889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003749 701 LAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (798)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (798)
...+-.+.+.. -...+--..+.+...|+...|+.++++-.+..
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 98887777654 34556667788889999999999999988653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.58 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 718 VYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 718 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
+|+.|..+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.60 E-value=2 Score=42.41 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
-|.++|++++|+.+|...+... +.|.+++.+-..+|.+.++|..|+.-....+..+ ..-+..|..-+.+-...|+..+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 3555666666666665555432 2255555555555666666555555554444432 1112223333333333444444
Q ss_pred HHHHHHHHHH
Q 003749 455 CLIVFERLKE 464 (798)
Q Consensus 455 A~~~~~~~~~ 464 (798)
|.+-++..++
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 4444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.59 E-value=24 Score=36.77 Aligned_cols=283 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCChhhHHHHHHHHH
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA----TLNAIIYGNIIYAQC 412 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 412 (798)
...+..+.|+|+...+.......... +...+..+... +.++++++....+++...-. ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~--~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSP--EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCCh--hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--GFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
+...+.|..++.+-....... ......+++.+.++ ....+..+|..++..-.-.-..-
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~------------------~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~-- 139 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN------------------PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLI-- 139 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc------------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcc--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 491 LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP---DVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
........+|..++..+.+.|.++.|...+..+...+... +......-+..+...|+..+|+..++..
T Consensus 140 ---------~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 140 ---------LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred ---------cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred HHCCCCCC---------------------------------cccHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCC
Q 003749 568 QKERHRPT---------------------------------SRTFMPIIHGFARA------GEMKRALEIFDMMRRSGCI 608 (798)
Q Consensus 568 ~~~~~~~~---------------------------------~~~~~~li~~~~~~------~~~~~a~~~~~~~~~~~~~ 608 (798)
........ ...+..+..-+... +..+++...|..+.+....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-----------------HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 609 PTVHTFNALILGLVEKRQMEK-----------------AIEILDEMTLAGISPNEHTYTTIMHGY 656 (798)
Q Consensus 609 p~~~~~~~li~~~~~~~~~~~-----------------A~~~~~~m~~~~~~p~~~t~~~li~~~ 656 (798)
....|..+...+.+.-..+. |+..|-+....|.. ..+..+.+.+
T Consensus 291 -~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~---~~~~~~~RlL 351 (352)
T PF02259_consen 291 -WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK---YVRQDLPRLL 351 (352)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC---chHHHhhHhc
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11901 hypothetical protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.34 E-value=20 Score=35.60 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=36.4
Q ss_pred CCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEE--EeCChhHHHHHHHhc
Q 003749 158 NLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV--IYDGPAAEKSAMKAV 214 (798)
Q Consensus 158 nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv--~f~~~~~a~~a~~~~ 214 (798)
.|.---+++.|+.+.++.+ +.++++..- .++|+. -|..| +|.+.++|+.|+..|
T Consensus 249 QL~Aas~~~~L~~f~~~~~-L~~~~VYqT-~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 249 QLSSASRSDTLNAYAKKQN-LSHYHVYET-KRDGKP-WYVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred EeecCCCHHHHHHHHHHcC-cCceEEEEE-EECCce-EEEEEecCcCCHHHHHHHHHhC
Confidence 3333456778888877775 456666654 444544 34433 799999999999988
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.30 E-value=13 Score=33.39 Aligned_cols=56 Identities=5% Similarity=0.015 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
..+++.+...|++-+|+++..+.... +......++.+..+.++...-..+|+-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555666666666655543221 222233445555555554444444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.18 E-value=5.5 Score=36.33 Aligned_cols=90 Identities=18% Similarity=0.053 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003749 621 LVEKRQMEKAIEILDEMTLAGIS----PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR 696 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~----p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 696 (798)
++++|++++|..-|.+.++.-.. -..+.|..-..++.+++.++.|++-..+.++.+.. .......-..+|-+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 45666666666666666554111 11234555555666777777777777777666542 22233333445666667
Q ss_pred hHHHHHHHHHHHhCC
Q 003749 697 MQSALAVTKEMSAQK 711 (798)
Q Consensus 697 ~~~A~~~~~~~~~~~ 711 (798)
+++|++=++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777777654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.15 E-value=3.6 Score=40.30 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM 637 (798)
Q Consensus 593 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 637 (798)
++++.++..-+..|+.+|..+++.+|+.+.+.+++.+|..+.-.|
T Consensus 117 q~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 117 QKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444444444444455555555555555555554444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.62 E-value=22 Score=34.81 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 475 GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
+...+.|..+|.+.+|.++.++....+ +.+...+-.|+..+...||--.+.+-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344567778888888888888877754 4566777777888888887777766666554
|
|
| >PF15023 DUF4523: Protein of unknown function (DUF4523) | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.83 Score=38.56 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=49.5
Q ss_pred cceeecCCCccC----chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 152 GKIFVGNLPNWI----KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 152 ~~~~v~nl~~~~----~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.+|.|.=|..++ +-..+...++.||+|.+|...- +--|.|.|.|..+|=+|+.+. +...-|..+.
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--------rqsavVvF~d~~SAC~Av~Af---~s~~pgtm~q 155 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--------RQSAVVVFKDITSACKAVSAF---QSRAPGTMFQ 155 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--------CceEEEEehhhHHHHHHHHhh---cCCCCCceEE
Confidence 367776443333 3345566778999999997753 457999999999999999987 3355677777
Q ss_pred eecc
Q 003749 228 VKLD 231 (798)
Q Consensus 228 v~~~ 231 (798)
+.|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 6664
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.57 E-value=43 Score=38.20 Aligned_cols=185 Identities=10% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 473 SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFC 552 (798)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 552 (798)
.+.+....+...|+.+++..+-.-|.. |..++..+.+.+.+++|++++..-. +..+.....-.+
T Consensus 506 nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~L- 569 (911)
T KOG2034|consen 506 NRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPEL- 569 (911)
T ss_pred hHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHH-
Confidence 344445566677777777665554443 5567777888888888888775531 222111111111
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 553 GMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA---GEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEK 629 (798)
Q Consensus 553 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 629 (798)
......+....+..+... ........++..+.+. .....+...++-....-..-+...+|.++..|++..+-+.
T Consensus 570 i~~~p~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~l 646 (911)
T KOG2034|consen 570 ITHSPKETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDL 646 (911)
T ss_pred HhcCcHHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccch
Confidence 112233333333333222 2333344445444444 2334455544444433223478888888888877655333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcCCC
Q 003749 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGD------TGKAFEYFTKLRNEGLE 678 (798)
Q Consensus 630 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~ 678 (798)
...++.....+-. ...-....++.|.+.+. +..+.++|.++++..+.
T Consensus 647 -l~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~ 699 (911)
T KOG2034|consen 647 -LLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQ 699 (911)
T ss_pred -HHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhh
Confidence 3333332221101 22233445556665553 44455666666555433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.55 E-value=15 Score=32.72 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+.++.+++..+++.+....+. ....-..-...+...|++.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555554443221 1111112223344555555555555554443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.47 E-value=22 Score=34.58 Aligned_cols=295 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGIDAP-------IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLIN 479 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 479 (798)
+.+-..+.+++++|+..+.++...|+..+ ..+...+...|...|++..-.+......+.-..-...--..+++
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 003749 480 LYTKI-----GKVSKALEVSKVMKSSGIKHNMKTYSM-----LINGFLKLKDWANVFAVFEDVMRD----GLKPDVVLYN 545 (798)
Q Consensus 480 ~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~ 545 (798)
.+... ..++..+.+....++...+-.-..... ++..+.+.|.+.+|+.+...+... +-+++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HH-HHHHHcCCChHHHHHHHHHHHHCC----CCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 546 NI-IRAFCGMGNMDRAIHIVKEMQKER----HRPTSRTFMPIIHG--FARAGEMKRALEIFDMMRRSGCIPTVHTFNALI 618 (798)
Q Consensus 546 ~l-i~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 618 (798)
.+ -.+|.+..+..++..-+....... ++|-...-.-|+++ .|...++.-|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E-------------- 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE-------------- 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh--------------
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--C
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG--R 696 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 696 (798)
+|.....-.+|...++-|+-.. .|++.-...+..-.+...++.....+++ ....+..+|.... +
T Consensus 235 -gft~l~~d~kAc~sLkYmlLSk---------IMlN~~~evk~vl~~K~t~~~y~~r~I~----am~avaea~~NRsL~d 300 (421)
T COG5159 235 -GFTLLKMDVKACVSLKYMLLSK---------IMLNRREEVKAVLRNKNTLKHYDDRMIR----AMLAVAEAFGNRSLKD 300 (421)
T ss_pred -ccccccchHHHHHHHHHHHHHH---------HHHhhHHHHHHHHccchhHhhhhhhhHH----HHHHHHHHhCCCcHhh
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003749 697 MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (798)
Q Consensus 697 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (798)
++.|+.-++.-...+ +--..+++.|-+.+...+
T Consensus 301 f~~aL~qY~~el~~D-~~iRsHl~~LYD~LLe~N 333 (421)
T COG5159 301 FSDALAQYSDELHQD-SFIRSHLQYLYDVLLEKN 333 (421)
T ss_pred HHHHHHHhhHHhccC-HHHHHHHHHHHHHHHHhh
|
|
| >KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.1 Score=49.42 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=66.1
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee--cceeeeeec
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTVKL 230 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~--~g~~~~v~~ 230 (798)
+.++-|..-..+...|..+|++||.|.+.+..+| -..+.|+|.+.++|..|++++ +|+.+ .|-+.+|.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-------~N~alvs~~s~~sai~a~dAl--~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-------LNMALVSFSSVESAILALDAL--QGKEVSVTGAPSRVSF 370 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-------ccchhhhhHHHHHHHHhhhhh--cCCcccccCCceeEEe
Confidence 5666777778889999999999999999999887 568999999999999999999 88875 488999999
Q ss_pred ccccchhh
Q 003749 231 DDGRRLKN 238 (798)
Q Consensus 231 ~~~~~~~~ 238 (798)
++...+..
T Consensus 371 ak~~~~~e 378 (1007)
T KOG4574|consen 371 AKTLPMYE 378 (1007)
T ss_pred cccccccc
Confidence 88665443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.03 E-value=3.4 Score=37.22 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHc-----------CChHHHHHHHHHHHHCCCCC
Q 003749 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARR-----------GDMHRARQTFENMRARGIEP 329 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~ 329 (798)
...++|+..|++++..+|..+.++ ..+.++|... ..+++|.+.|+++... .|
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAl---------------w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P 111 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDAL---------------WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DP 111 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---------------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHhcCCchHHHH---------------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CC
Confidence 455899999999999999854333 3333333222 2266777777777776 78
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI 362 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 362 (798)
+..+|+.-+.+.. +|-+++.++.+.+.
T Consensus 112 ~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 112 NNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp T-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred CcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 8888888888774 36677777776653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=88.95 E-value=16 Score=40.91 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=18.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMR 323 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 323 (798)
..-|. .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 45565 6788888999999998885433
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.55 E-value=28 Score=34.77 Aligned_cols=81 Identities=5% Similarity=-0.089 Sum_probs=42.0
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHcCCCCCHHHH
Q 003749 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM----EEALSCVRKMKEEGIEMSLVTY 369 (798)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~ 369 (798)
.+.......+..+...|. .++...+..+.+. .|...-...+.++...|+. .+++.++..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 344444555555655554 3344444444332 3555556666666666653 4566666655332 3455555
Q ss_pred HHHHHHHHhcC
Q 003749 370 SIIVGGFAKMG 380 (798)
Q Consensus 370 ~~l~~~~~~~g 380 (798)
...+.++...+
T Consensus 109 ~~A~~aLG~~~ 119 (280)
T PRK09687 109 ASAINATGHRC 119 (280)
T ss_pred HHHHHHHhccc
Confidence 55555555443
|
|
| >KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.51 E-value=8.1 Score=40.06 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------------------------------
Q 003749 10 PHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEP---------------------------------------- 49 (798)
Q Consensus 10 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppp~~~~p---------------------------------------- 49 (798)
|.-.|+|.++...++-.++....++.+..|.+.+-.||..
T Consensus 92 ~~rAP~P~~T~~~~~~~~T~~~~~~~~~~P~~~~V~PP~~~~~~~~~~~t~s~~~~~~~s~~~~~~k~~F~~~~~~AE~~ 171 (817)
T KOG1925|consen 92 PARAPEPGPTGPASPVGPTSSTGPALLTGPASSPVGPPSGLQASVNLFPTISVAPSADTSSERSIYKARFLENVAAAETE 171 (817)
T ss_pred cccCCCCCCCCCCCCCCCcccCCccccCCCCCCCCCCchhhhhhccCCchhhhhcccchhhhhhhHHhHHHhhhHHHHHH
Q ss_pred -----------------------CCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 003749 50 -----------------------HNLHRPPKSSRPTRSKIPK----NPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSP 102 (798)
Q Consensus 50 -----------------------~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~p 102 (798)
....+...|..-.+..+.+ ......++...-|++|++|..-|...-...+.||
T Consensus 172 ~~~A~~~~~~~~L~~~~~~~~~~~~~~~~~~P~~~~~~s~~~~~~~~~~R~~~~~~~~P~~P~~P~~~P~~~~L~~GvPP 251 (817)
T KOG1925|consen 172 KQVALAQGRAETLAGAMPNEAGGDADSPETAPAARTPQSPAPCVLLRAQRSLAPEPKEPLIPASPKELPTRDFLLSGVPP 251 (817)
T ss_pred HHHHHHhcccccccccCcccccCCCCCcccChHhhCcCCCchHHHHhhhhcCCCCCCCCCCCCChhccCCchhhhcCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CccCcchhhhcccccceeecCCCccCchHHHHHHhc
Q 003749 103 PPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSS------SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFR 173 (798)
Q Consensus 103 pppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f~ 173 (798)
|||-.+-|||+++..+-+..-+.....+.....-. ......+....++..++|-.==+-.++-..|..+|.
T Consensus 252 PPP~G~~PPPPP~~~~L~~~v~~~~~~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~~D~~r~~~LFE 328 (817)
T KOG1925|consen 252 PPPKGPFPPPPPLAAPLPHSVPDSSALPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVSVDTARLEHLFE 328 (817)
T ss_pred CCCCCCCCCCCCCcccCcCCCCCcccccccCceeEEEeecceecCCCCCccccccchhhhccCcceecHHHHHHHHH
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.2 Score=27.54 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 717 FVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 717 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.+|..++.+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666666666677777766666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0260 consensus RNA polymerase II, large subunit [Transcription] | Back alignment and domain information |
|---|
Probab=88.49 E-value=16 Score=42.71 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC
Q 003749 12 FPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPP--SHS 89 (798)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~p--~~~ 89 (798)
.|.+|.=.++.+.=.|++++-++..|.-.|..|.-.|..|..+|..|.-.|.+|.-.|.++.-.|..|.=.|..| .|+
T Consensus 1474 sptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsyspt 1553 (1605)
T KOG0260|consen 1474 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1553 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 003749 90 LSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLA 140 (798)
Q Consensus 90 ~~~~~~~~~~~~ppppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (798)
-|+-.+.+|.-.|..|.-.|..|.-...+.-++..+.-.+..+.-...+..
T Consensus 1554 spsysptsp~ysptspsysptspsys~~~~ysp~sp~ysptsp~ysp~sps 1604 (1605)
T KOG0260|consen 1554 SPSYSPTSPSYSPTSPSYSPTSPSYSTSPSYSPTSPSYSPTSPSYSPTSPS 1604 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCC
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.43 E-value=24 Score=33.87 Aligned_cols=274 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHcC
Q 003749 483 KIGKVSKALEVSKVMKSSGIKHNMKTYSML---INGFLKLKDWANVFAVFEDVMRD-----GLKPDVVLYNNIIRAFCGM 554 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~ 554 (798)
+....++|+.-|.+..+.......+-|.+| +..+.+.+++++....|.+++.- --.-..-+.|+++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHH
Q 003749 555 GNMDRAIHIVKEMQK-----ERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT-----------VHTFNALI 618 (798)
Q Consensus 555 g~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-----------~~~~~~li 618 (798)
.+.+--...|+.-.. .+-...-.+-+.|...|...+++.+..++++++......-+ ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHc------CCCCCHHHHHHH
Q 003749 619 LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYA-----SLGDTGKAFEYFTKLRNE------GLELDVFTYEAL 687 (798)
Q Consensus 619 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~-----~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l 687 (798)
..|....+-.+...++++.+......-......+|+-|. +.|.+++|..-|-++.+. .-+....-|..|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Q ss_pred HHHHHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 688 LKACCKSG--RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSK 763 (798)
Q Consensus 688 ~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 763 (798)
..++.+.| -++. +++.-.+-.|.+...+.|+.+|... +..+-.++++.-... +..|+.+-+++=+.+.+
T Consensus 279 ANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~~~~~-IM~DpFIReh~EdLl~n 349 (440)
T KOG1464|consen 279 ANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKSNRSN-IMDDPFIREHIEDLLRN 349 (440)
T ss_pred HHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHhhhcc-ccccHHHHHHHHHHHHH
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.22 E-value=21 Score=32.80 Aligned_cols=177 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
++...+-+..++.|...-......+.-.+ .+++|..-......--...|..++.......- +.....+++
T Consensus 9 qql~~ik~wwkeNGk~li~gviLg~~~lf--------GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~--~~~~~~ekf 78 (207)
T COG2976 9 QQLEAIKDWWKENGKALIVGVILGLGGLF--------GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP--KSIAAAEKF 78 (207)
T ss_pred HHHHHHHHHHHHCCchhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHH
Q ss_pred HHCCCCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHC
Q 003749 568 QKERHRPTSRTFMPIIHG--FARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL-----GLVEKRQMEKAIEILDEMTLA 640 (798)
Q Consensus 568 ~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~-----~~~~~~~~~~A~~~~~~m~~~ 640 (798)
......-....+.+|.-+ +...+++++|+..++..... +....+..++. .....|.+|+|+++++...+.
T Consensus 79 ~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~ 155 (207)
T COG2976 79 VQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE 155 (207)
T ss_pred HhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003749 641 GISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLEL 679 (798)
Q Consensus 641 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 679 (798)
.-.......-.+++...|+-++|..-|++.++.+..+
T Consensus 156 --~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 156 --SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred --cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.19 E-value=28 Score=34.28 Aligned_cols=170 Identities=9% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh--cCChHHHHHHH
Q 003749 593 KRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTL-AGISPNEHTYTTIMHGYAS--LGDTGKAFEYF 669 (798)
Q Consensus 593 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~t~~~li~~~~~--~g~~~~A~~~~ 669 (798)
++-..+++-....-..-...-|..|+ .++..+.+|+++|+...- ..+--|......+++.... ......-.++.
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----H
Q 003749 670 TKLRNE-GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ-KIPRNTFVYNILIDGWARRGDVWEAADLMQQ-----M 742 (798)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----m 742 (798)
+.+... +-.++..+...++..+++.+++..-.++|+..... +...|...|...|+.....|+..-..+++++ +
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwi 269 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWI 269 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEe
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcC
Q 003749 743 KQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 743 ~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
++.|+.-+...-..|-..+.++|
T Consensus 270 kR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 270 KRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred eecCCcCCHHHHHHHHHHHHhcC
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.035 Score=49.26 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003749 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (798)
Q Consensus 652 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (798)
++..+.+.+..+....+++.+...+...+....+.|+..|++.++.++..++++ ..+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccccchhhhhhhhhh--heeecCCCCCC
Q 003749 732 VWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPMLTKFYLFSFIWF--LITMNSHKNDE 798 (798)
Q Consensus 732 ~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~w~--~~~~~~~~~~~ 798 (798)
+++|..++.++.. +...+..+.+.++++.|. +..+...+.-.|. +..|..++.++
T Consensus 86 ~~~a~~Ly~~~~~---------~~~al~i~~~~~~~~~a~---e~~~~~~~~~l~~~l~~~~l~~~~~~ 142 (143)
T PF00637_consen 86 YEEAVYLYSKLGN---------HDEALEILHKLKDYEEAI---EYAKKVDDPELWEQLLKYCLDSKPFN 142 (143)
T ss_dssp HHHHHHHHHCCTT---------HTTCSSTSSSTHCSCCCT---TTGGGCSSSHHHHHHHHHHCTSTCTC
T ss_pred HHHHHHHHHHccc---------HHHHHHHHHHHccHHHHH---HHHHhcCcHHHHHHHHHHHHhcCccc
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=31 Score=34.48 Aligned_cols=263 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-
Q 003749 478 INLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGN- 556 (798)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~- 556 (798)
.......|.-....+.+..... ..|.......+..+...|.-+-...+...+... |...-...+.++.+.|+
T Consensus 12 ~~~~~~~~~~~~~~~~L~~~L~---d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~----d~~vR~~A~~aLg~lg~~ 84 (280)
T PRK09687 12 KEYSLYSQCKKLNDDELFRLLD---DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSK----NPIERDIGADILSQLGMA 84 (280)
T ss_pred HHHHHHHHHhhccHHHHHHHHh---CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCC
Q ss_pred ---hHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 557 ---MDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEI 633 (798)
Q Consensus 557 ---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 633 (798)
.+++...+..+......+.+.....-.-++...+.......++..+...-...+..+-...+.++.+.++ .+++..
T Consensus 85 ~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~ 163 (280)
T PRK09687 85 KRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPL 163 (280)
T ss_pred ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 003749 634 LDEMTLAGISPNEHTYTTIMHGYASLGD-TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI 712 (798)
Q Consensus 634 ~~~m~~~~~~p~~~t~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (798)
+-.+.+ .++...-...+.++.+.+. ...+...+..+.. ..+..+-...+.++.+.|+ ..|...+-+..+.+.
T Consensus 164 L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~ 236 (280)
T PRK09687 164 LINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT 236 (280)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 713 PRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSK 763 (798)
Q Consensus 713 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 763 (798)
.....+.++...|+. +|+..+.++.+. .+|..+-...+.+|.+
T Consensus 237 -----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 237 -----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred -----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
|
|
| >PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP) | Back alignment and domain information |
|---|
Probab=87.88 E-value=3.5 Score=39.15 Aligned_cols=74 Identities=18% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 003749 33 SFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPP 106 (798)
Q Consensus 33 ~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ppppp 106 (798)
+......|.|.|+.+++....+|.++++...+.|.+++...+......+++++..+..+++....+..++|+.+
T Consensus 34 Pa~A~AdPaPtPt~PPtt~~aPP~p~~P~atPaP~appt~~PAdPnA~~Pp~PadPna~~pppadpnap~P~~p 107 (297)
T PF07174_consen 34 PATAQADPAPTPTAPPTTTTAPPAPPPPAATPAPTAPPTPPPADPNAPPPPPPADPNAAPPPPADPNAPPPPAP 107 (297)
T ss_pred cccccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
|
Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region |
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.84 E-value=5.9 Score=46.09 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------CCCCCCCCCCCC
Q 003749 3 NILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPT-------------------------PPEPHNLHRPPK 57 (798)
Q Consensus 3 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppp~-------------------------~~~p~~~~~~~~ 57 (798)
|..--..+|.+.-+..++.+.++.|.++-.+...+..|+..+. ..-+-+..+||.
T Consensus 1817 gtg~~G~~P~~~v~~~pP~p~s~ap~pplr~~~a~~~p~a~~rq~~vP~~~~r~~s~a~~~~~t~~~k~q~~~p~m~Ppq 1896 (1958)
T KOG0391|consen 1817 GTGPGGSAPAQVVHTQPPKPISPAPFPPLRQQQAQQQPTATTRQVQVPQIQGRAQSPAGKLTPTHLIKMQKQKPQMPPPQ 1896 (1958)
T ss_pred cCCCCCCCCccccccCCCCCCCCCCCCcccccccccCCCccccccccCcccccCcCCCCCCCHHHHHhhcCCCCCCCCCc
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 003749 58 SSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQE 118 (798)
Q Consensus 58 ~~~~~~~~p~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ppppp~~~~~p~~~~~~ 118 (798)
+.+.+.+.-|+||.++.++..+--.++.-.........-+.+..+.+|+++|+++.+.+++
T Consensus 1897 ~~~~pqp~gpqPp~~p~p~l~~v~~~rrg~lg~~rs~gd~~se~~sqpqp~p~~~~p~pp~ 1957 (1958)
T KOG0391|consen 1897 PAAQPQPQGPQPPQQPSPQLTTVTAPRRGALGVARSTGDPTSELQSQPQPQPQAPQPAPPP 1957 (1958)
T ss_pred cCCCCCCCCCCCCCCCCCCCCccccCCCCCccceeccCCCCccccCCCCCCCCCCCCCCCC
|
|
| >KOG4210 consensus Nuclear localization sequence binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=87.78 E-value=0.32 Score=48.19 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=0.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++.|+|++...+.+.+...++..+|.+........ ..+..++|++.+.|...+.+..++... ....+.++.+...+.
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~-~~~~~sk~~~s~~f~~ks~~~~~l~~s--~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEAGLRVDARSSSL-EDSLSSKGGLSVHFAGKSQFFAALEES--GSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccchhhccccccchhhcCcccchhhhh-ccccccccceeeccccHHHHHHHHHhh--hccccccccccCccc
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
..+
T Consensus 166 ~~~ 168 (285)
T KOG4210|consen 166 TRR 168 (285)
T ss_pred ccc
|
|
| >KOG0260 consensus RNA polymerase II, large subunit [Transcription] | Back alignment and domain information |
|---|
Probab=87.67 E-value=31 Score=40.42 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003749 2 DNILSLSAPHFPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTH 81 (798)
Q Consensus 2 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 81 (798)
+|+--.|+-=.|.+|.-.++.+.-.|++++=++..|.-.|..|...|..|...|..|.-.|.+|.-.|.++.-.|..|.=
T Consensus 1450 p~~s~tsp~ysptsp~ys~tsp~~sptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsy 1529 (1605)
T KOG0260|consen 1450 PGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529 (1605)
T ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhhcccccc
Q 003749 82 VPSPPSHSLSAKLRLSSKLSPPPPPP---PPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGK 153 (798)
Q Consensus 82 ~p~~p~~~~~~~~~~~~~~~ppppp~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (798)
.|..|.=+|.++...+..|.=.|..| |..|.-.+..+.-++.++.-...+..++++..-++....-.+....
T Consensus 1530 sptspsysptspsysptspsysptspsysptsp~ysptspsysptspsys~~~~ysp~sp~ysptsp~ysp~sps 1604 (1605)
T KOG0260|consen 1530 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSTSPSYSPTSPSYSPTSPSYSPTSPS 1604 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCC
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.66 E-value=11 Score=30.33 Aligned_cols=88 Identities=9% Similarity=0.101 Sum_probs=0.0
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 674 NEGLELDVFTYEALLKACCKSGRMQ--SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV 751 (798)
Q Consensus 674 ~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 751 (798)
++|..-+..-|+.--..|+...+++ +..+-++.+...++.|+..+....+.+|.|.+++..|+++|+-.+.+ .....
T Consensus 1 sH~~~Et~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~ 79 (108)
T PF02284_consen 1 SHGSEETDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKK 79 (108)
T ss_dssp -TS----HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-T
T ss_pred CCCcccCHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChH
Q ss_pred HHHHHHHHHHH
Q 003749 752 HTYTSFINACS 762 (798)
Q Consensus 752 ~~~~~l~~~~~ 762 (798)
.+|.-+++-+.
T Consensus 80 ~~Y~~~lqElk 90 (108)
T PF02284_consen 80 EIYPYILQELK 90 (108)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHh
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF15449 Retinal: Retinal protein | Back alignment and domain information |
|---|
Probab=87.49 E-value=20 Score=41.49 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003749 1 MDNILSLSAPHFPHTPAT-LLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSAT 79 (798)
Q Consensus 1 ~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 79 (798)
.|+.+...++.+-.++.+ ......|+-.--+.+......|+.--..+-+|....+.++..|.....|.||-.+...+++
T Consensus 986 ~e~s~arp~~~p~s~easr~~~Ersp~~~Rk~SPtR~hwsp~~ekR~~SpPsshr~aQPS~P~v~~~PSPP~SPr~~SPP 1065 (1287)
T PF15449_consen 986 SEPSLARPPRGPHSPEASRQSQERSPPLVRKASPTRAHWSPRAEKRLPSPPSSHRPAQPSLPSVQRSPSPPLSPRVLSPP 1065 (1287)
T ss_pred cCccccCCCCCCCCCcccccccccCCcccccCCCCcCCCCCccccCCCCCCccCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q ss_pred CC---CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchh--hhcccccce
Q 003749 80 TH---VPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEE--TEFRQEGKI 154 (798)
Q Consensus 80 ~~---~p~~p~~~~~~~~~~~~~~~ppppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 154 (798)
.. +.||++...++++..+++.+-.++.+|.......++.-...+.++..+................ .-....+.|
T Consensus 1066 ~~kk~~SPP~q~KlpSPP~~s~p~q~~~~SpP~q~~Eas~pss~~spSPP~SPSq~~K~~rdsed~~~~saK~~~Nt~SI 1145 (1287)
T PF15449_consen 1066 TQKKLPSPPPQHKLPSPPPQSPPAQHKLSSPPAQRREASPPSSGPSPSPPVSPSQGPKEQRDSEDSQAASAKVSGNTCSI 1145 (1287)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCccccCccccccccCCccce
Q ss_pred ee
Q 003749 155 FV 156 (798)
Q Consensus 155 ~v 156 (798)
|.
T Consensus 1146 FC 1147 (1287)
T PF15449_consen 1146 FC 1147 (1287)
T ss_pred ec
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.10 E-value=41 Score=34.99 Aligned_cols=276 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHHHHHHHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF----SPSIISYGCLINLY 481 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~ 481 (798)
..+.+..+.|+++...+.......... +...+..+... ..++++++....++....-. ......|.......
T Consensus 3 ~~~eaaWrl~~Wd~l~~~~~~~~~~~~--~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 3 LAAEAAWRLGDWDLLEEYLSQSNEDSP--EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHHhcCChhhHHHHHhhccCCCh--hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHH
Q 003749 482 TKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKL--------KDWANVFAVFEDVMR--DGLKPDVVLYNNIIRAF 551 (798)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~ 551 (798)
.+...+.+..++.+........ ......++...... ..++..+.+-..+.+ ........+|..++..+
T Consensus 79 ~~lq~L~Elee~~~~~~~~~~~--~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a 156 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNLSQN--PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA 156 (352)
T ss_pred HHHhHHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q ss_pred HcCCChHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------------------
Q 003749 552 CGMGNMDRAIHIVKEMQKERHRP---TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT------------------ 610 (798)
Q Consensus 552 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~------------------ 610 (798)
.+.|+++.|...+..+...+... .......-+..+...|+-.+|+..++...+.....+
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Q ss_pred ---------------HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-----
Q 003749 611 ---------------VHTFNALILGLVEK------RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGK----- 664 (798)
Q Consensus 611 ---------------~~~~~~li~~~~~~------~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~----- 664 (798)
..++..+..-+... +..+++.+.|.+..+.. +-....|..+...+.+.-+.+.
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~k~~~~~a~~~~~~~~~~~~~~~~ 315 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD-PSWEKAWHSWALFNDKLLESDPREKEE 315 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHhhhhcccc
Q ss_pred ------------HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 665 ------------AFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 665 ------------A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
|+.-|-+.+..|.. .++..+.+.+
T Consensus 316 ~~~~~~~~~~~~ai~~y~~al~~~~~---~~~~~~~RlL 351 (352)
T PF02259_consen 316 SSQEDRSEYLEQAIEGYLKALSLGSK---YVRQDLPRLL 351 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhCCC---chHHHhhHhc
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.09 E-value=1.7 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003749 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (798)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (798)
..+|..++.+|...|++++|+..|+++++.+..
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.05 E-value=23 Score=31.96 Aligned_cols=136 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.+++.-+.+.++.++...|..+++.+.+.|+ ...+..+...++-+|.......+ +...+.+..+.++--+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~----~~~L~qllq~~Vi~DSk~lA~~L--Ls~~~~~~~~~Ql~lDMLk- 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQ----FSQLHQLLQYHVIPDSKPLACQL--LSLGNQYPPAYQLGLDMLK- 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHhhcccCCcHHHHHHH--HHhHccChHHHHHHHHHHH-
Q ss_pred CCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003749 536 GLKPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606 (798)
Q Consensus 536 g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 606 (798)
-.. .+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+|+-..+.+
T Consensus 87 ----RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 ----RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.02 E-value=7.9 Score=35.76 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHH
Q 003749 407 IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC---GFSPSIISYGCLINLYTK 483 (798)
Q Consensus 407 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~ 483 (798)
++..+...-.-++|.+.|-.+...+.--+......|+..|. ..+.++++.++.+.++. +-..|...+..|++.|.+
T Consensus 112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q ss_pred cCCHHHHH
Q 003749 484 IGKVSKAL 491 (798)
Q Consensus 484 ~g~~~~A~ 491 (798)
.|+++.|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.81 E-value=58 Score=36.40 Aligned_cols=491 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 003749 282 QAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEG 361 (798)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 361 (798)
..+++.|..++.|+ |..+.++|.-..+.+.|.++++++.+. |......-|.......-..+-+....+-....
T Consensus 199 r~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e----~~~llayQIAFDL~esasQefL~~v~~~l~~d 271 (929)
T KOG2062|consen 199 RLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE----DDLLLAYQIAFDLYESASQEFLDSVLDRLPAD 271 (929)
T ss_pred HHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc----chhhhHHHHHHHHhhccCHHHHHHHHHHcccc
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 003749 362 IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (798)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 441 (798)
-.-+......+++.+.- +...+++....-+....|.......-... +.--+.-|.-+-.-+...| ..+...+..
T Consensus 272 ~~~de~p~~kii~ILSG----e~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~G-TT~D~FlR~ 345 (929)
T KOG2062|consen 272 DARDEKPMEKIISILSG----EETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAG-TTSDTFLRN 345 (929)
T ss_pred cccccChHHHHHHHhcC----chHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcC-CcchHHHHh
Q ss_pred HHHHHHhc-----------------CCHHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 442 MMDGYTII-----------------GNEEKCLIVFERLKEC------GFSPSIISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 442 l~~~~~~~-----------------g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
=++.+.+. |+...|.+++.-.+-. +++ .-.....|.-+++.+|+- ..+++....
T Consensus 346 NL~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~-EGGalyAlGLIhA~hG~~--~~~yL~~~L 422 (929)
T KOG2062|consen 346 NLDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYK-EGGALYALGLIHANHGRG--ITDYLLQQL 422 (929)
T ss_pred chhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCcc-ccchhhhhhccccCcCcc--HHHHHHHHH
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH-HHHHHHHCCCCCCc
Q 003749 499 SSGIKHNMKTYSMLINGFLKLKD-WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIH-IVKEMQKERHRPTS 576 (798)
Q Consensus 499 ~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~ 576 (798)
+..-.+....-..|.-++...|. -.+..+-++.....+-......-..-+.++.-.-...+|++ ++....+-.+. ..
T Consensus 423 k~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHe-ki 501 (929)
T KOG2062|consen 423 KTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHE-KI 501 (929)
T ss_pred HhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHH-HH
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 577 RTFMPIIHGFARAGEMKRALEIFDMMR-RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (798)
Q Consensus 577 ~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 655 (798)
.-=..+.-++.--|+-++|..+..+|. ..+......-..++..+|+..|+.....+++.-..... ..|..-+..+.-+
T Consensus 502 ~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~-nDDVrRaAVialG 580 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV-NDDVRRAAVIALG 580 (929)
T ss_pred HHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccccc-chHHHHHHHHHhe
Q ss_pred HHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------
Q 003749 656 YASLGDTGKAFEYFTKLRNE-GLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA------- 727 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 727 (798)
+.-..+.+....+.+-+.++ +.....-+-..|.-+|+-.|+ .+|..+++-|... +.|-+--..||..-.
T Consensus 581 FVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D--~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 581 FVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSD--PVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred eeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcC--hHHHHHHHHHHHHHHHHHhccc
Q ss_pred -HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCccccccccccch-----------hhhhhhhhh-------
Q 003749 728 -RRGDVWEAADLMQQMKQEGVQPDVHTYTSFI-NACSKAGDMQVRFSIPMLTK-----------FYLFSFIWF------- 787 (798)
Q Consensus 728 -~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~-~~~~~~g~~~~a~~~~~~~~-----------~~~~~~~w~------- 787 (798)
-.-++..-.+.|.+.+...-.....-|..++ ++....|--...+.++.... .++...+|+
T Consensus 658 ~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~~vvGl~~Flq~WyWfPL~~flS 737 (929)
T KOG2062|consen 658 QLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQYWYWFPLIHFLS 737 (929)
T ss_pred ccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---heeecC
Q 003749 788 ---LITMNS 793 (798)
Q Consensus 788 ---~~~~~~ 793 (798)
.++|-+
T Consensus 738 Laf~PT~vi 746 (929)
T KOG2062|consen 738 LAFTPTTVI 746 (929)
T ss_pred HhcCcceEE
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.75 E-value=11 Score=39.44 Aligned_cols=308 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH-------------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS-------------KALEVSKVMKSSGIKHNMKTYSMLING 515 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-------------~A~~~~~~m~~~~~~~~~~~~~~ll~~ 515 (798)
.+.++..++++..+...|.....+.+|.-...|.+.|... .+...-+.|-.....-+...+-...-.
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCChHHHH---HHHHHHHHCCCCCCcccHHHHHHHHHh
Q 003749 516 FLKLKDWANVFAVFEDVMRD----GLKPDVVLYNNIIRAFCGMGNMDRAI---HIVKEMQKERHRPTSRTFMPIIHGFAR 588 (798)
Q Consensus 516 ~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~li~~~~~ 588 (798)
|.....+-+|+++...+... .-..-..........+......++|+ .++.+|...+-. ....-..-.....+
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~-~~~gn~~~~nn~~k 188 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM-KLVGNHIPANNLLK 188 (696)
T ss_pred eeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccchhhhcc
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003749 589 AGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEY 668 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~ 668 (798)
.+....|..-+--.- +.......-+..|.+..++..+..-.+...... ..+....-.--..+.-.|++.+|.++
T Consensus 189 t~s~~aAe~s~~~a~-----~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~Kl 262 (696)
T KOG2471|consen 189 TLSPSAAERSFSTAD-----LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKL 262 (696)
T ss_pred cCCcchhcccchhhc-----cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHH
Q ss_pred HHHHHHcCCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------CCCCC----------CHHHHHHHH
Q 003749 669 FTKLRNEGLEL--------DVFTYEALLKACCKSGRMQSALAVTKEMSA-------QKIPR----------NTFVYNILI 723 (798)
Q Consensus 669 ~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~----------~~~~~~~l~ 723 (798)
+...--..-.- ....||.|.-...+.|.+.-+..+|.++.+ .|+.+ ...+....+
T Consensus 263 L~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 263 LLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCG 342 (696)
T ss_pred HHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhh
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003749 724 DGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKA 764 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~ 764 (798)
-.|...|+.-.|.+.|.+...- +.-++..|-.|..+|...
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.65 E-value=65 Score=36.81 Aligned_cols=381 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
.++|..+.+.|..+-|+...+.=..+ ...+..+|+++.|++...++- |..+|..|+....++
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
|+.+-|+-.|++... |..|--.|.-.|+.++-.++.+....++- ...........|+.++-.+++
T Consensus 686 gn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~D------~~~~~qnalYl~dv~ervkIl 750 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRND------ATGQFQNALYLGDVKERVKIL 750 (1202)
T ss_pred cchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhhh------hHHHHHHHHHhccHHHHHHHH
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------------------------HHHHHHHHHH
Q 003749 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN------------------------MKTYSMLING 515 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------------------------~~~~~~ll~~ 515 (798)
. +...+...-.....+|.-++|.++.++........- ...-..+=.+
T Consensus 751 ~---------n~g~~~laylta~~~G~~~~ae~l~ee~~~~~~~lP~~~~~a~ll~pP~p~~~l~nwPLl~~s~~~fe~~ 821 (1202)
T KOG0292|consen 751 E---------NGGQLPLAYLTAAAHGLEDQAEKLGEELEKQVPSLPEVDPNASLLQPPVPIMPLENWPLLSVSKGTFEGA 821 (1202)
T ss_pred H---------hcCcccHHHHHHhhcCcHHHHHHHHHhhccccCCCCCCCCcccccCCCCccccccCCchhhhhhhhhhHh
Q ss_pred HHhcCCHHHHH----------------------HHHHHHHHcCCCCCHHHHHH---------------------------
Q 003749 516 FLKLKDWANVF----------------------AVFEDVMRDGLKPDVVLYNN--------------------------- 546 (798)
Q Consensus 516 ~~~~~~~~~a~----------------------~~~~~~~~~g~~~~~~~~~~--------------------------- 546 (798)
....+.-.... ..+.+....-..-...-|..
T Consensus 822 ~~~~~~~~av~~~~e~~~g~e~~~~e~~l~ed~~~~~d~~g~~~~dE~~gWdv~d~~l~pe~~~~~~~~~~~~~~p~~~~ 901 (1202)
T KOG0292|consen 822 LLSRSSSLAVDRDDEGDWGEEGWDVELMLGEDGILFNDGAGEVGEDEGGGWDVGDLDLPPEEDTPKGADDGEFVVPAQGM 901 (1202)
T ss_pred hhhhcccCcccccccccccccchhhhhccccccccccccccccCcccccCcCcccccCCccccccccccccceecCCCCC
Q ss_pred ----------HHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh---------------cCCHHHH------
Q 003749 547 ----------IIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR---------------AGEMKRA------ 595 (798)
Q Consensus 547 ----------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------------~~~~~~a------ 595 (798)
|..-....|.++.|.+++.+-...-..-...++-.-+...++ ...+.+.
T Consensus 902 ~~~~W~~nS~L~adhvaAGsf~tA~~lL~dqvgvv~f~p~Kt~fl~iy~~sR~~l~~~~~~~~~~~~~R~~se~~~~~~~ 981 (1202)
T KOG0292|consen 902 SVSIWSNNSPLAADHVAAGSFETAMRLLHDQVGVVNFGPLKTHFLKIYAGSRTYLRATPCLPVSLYPVRNWSETSSKQGL 981 (1202)
T ss_pred cchhccccCcchhhhhhcCchHHHHHHHHhhhcceecccHHhhhhhhccccceeccCCCCcccccccccccccchhhccC
Q ss_pred ------HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH------
Q 003749 596 ------LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA------GISPNEHTYTTIMHGYA------ 657 (798)
Q Consensus 596 ------~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p~~~t~~~li~~~~------ 657 (798)
+..+.+-.+.|.. +...|++.+|++.|+..+-. +-.-+..-...++..|.
T Consensus 982 P~v~~~l~~l~~kl~~gy~------------ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL 1049 (1202)
T KOG0292|consen 982 PAVGFKLSQLNKKLQKGYK------------LTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGL 1049 (1202)
T ss_pred CcccccHHHHHHHHHHHHh------------hhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhh
Q ss_pred ---------hcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 658 ---------SLGDTGKAFEYFTKLRNEGLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 658 ---------~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
..+..+++.++-.......+.|- ..+....+..+.|.+++..|-.+..++++.+-.+....-...+...
T Consensus 1050 ~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a 1129 (1202)
T KOG0292|consen 1050 SVELERRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQA 1129 (1202)
T ss_pred eeeeeecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q ss_pred HHcCCHHH
Q 003749 727 ARRGDVWE 734 (798)
Q Consensus 727 ~~~g~~~~ 734 (798)
+...-.++
T Consensus 1130 ~eknp~Da 1137 (1202)
T KOG0292|consen 1130 AEKNPTDA 1137 (1202)
T ss_pred hhcCcccc
|
|
| >KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.57 E-value=4.6 Score=38.41 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhhcccccceeecCCCccCchHHHHHHh
Q 003749 93 KLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFF 172 (798)
Q Consensus 93 ~~~~~~~~~ppppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nl~~~~~~~~l~~~f 172 (798)
+.+.+....|.|--..+.+-....-++-..+.-...........++.......+ ||++||+.++.-.||+..+
T Consensus 279 ~l~gp~~~lpqp~~eq~~~~t~~rR~p~~~g~~~n~~~~s~g~~~g~~a~~~~d-------i~~~nl~rd~rv~dlk~~l 351 (396)
T KOG4410|consen 279 SLGGPGRTLPQPDNEQPQGETAQRRTPRRKGRFVNRTTKSEGDQSGVEAGAKTD-------IKLTNLSRDIRVKDLKSEL 351 (396)
T ss_pred ccCCCCccCCCCCcccccccccccCCCCCCCCcccccccCCCCCCcccCccccc-------eeeccCccccchHHHHHHH
Q ss_pred cccCcc-eEEEEecCCCCCCCCcceEEEEeCChhHH
Q 003749 173 RQFGPI-KNVILIKGYNNFEKNVGFGFVIYDGPAAE 207 (798)
Q Consensus 173 ~~~g~v-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 207 (798)
.+-|-+ .++...-. +|-||..|.+...+
T Consensus 352 r~~~~~pm~iswkg~-------~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 352 RKRECTPMSISWKGH-------FGKCFLHFGNRKGV 380 (396)
T ss_pred HhcCCCceeEeeecC-------CcceeEecCCccCC
|
|
| >KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.45 E-value=34 Score=33.39 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 003749 24 PHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPP 103 (798)
Q Consensus 24 ~~~~~~~~~~~~~~~~p~ppp~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~pp 103 (798)
+....+......|...|++|...----..+.++.--+.++..|...-.....++..+..-.....+.-.....++...-.
T Consensus 42 ~~~~lp~~nt~sp~~spsgps~~~~~rsaps~~~g~adqpgsp~ah~akS~~~~~~qS~~~~q~tPg~~~~~gs~sfssl 121 (350)
T KOG4285|consen 42 RKATLPSSNTASPLNSPSGPSSDIFARSAPSVPQGLADQPGSPSAHWAKSLVQSGEQSAAQTQNTPGNLSFGGSSSFSSL 121 (350)
T ss_pred cccccccccCCCCCCCCCCCCcchhhcccccccccCCCCCCCcccccCcccCCCccccccccccCCCcccccCCCCcccc
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC---------------cchhhhcccccceeecCCCc-------
Q 003749 104 PPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLAT---------------SQEETEFRQEGKIFVGNLPN------- 161 (798)
Q Consensus 104 ppp~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~v~nl~~------- 161 (798)
-.|.+.+....+--..+...+-..-+....+....... .+......++..+=-|+...
T Consensus 122 r~p~~q~~q~s~~g~~q~~ap~~s~Qd~~~pas~igqpn~~~ar~ttLspP~~a~v~p~~~qg~s~pte~~~d~~D~WVT 201 (350)
T KOG4285|consen 122 RKPAPQSIQTSSFGGQQMHAPLRSLQDKVEPASKIGQPNTFTARSTTLSPPITARVTPRLAQGESQPTEEEADAADTWVT 201 (350)
T ss_pred ccCCccccccCcchhhhhcCcccccccccCCCCCCCCCCcccccccccCCccccccccccccccccccccccccccceEE
Q ss_pred -----cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 162 -----WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 162 -----~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
--.-..|-++|++||.|.+...... ..+-+|-|.+..+|++||.. ||+.|+|..+
T Consensus 202 VfGFppg~~s~vL~~F~~cG~Vvkhv~~~n-------gNwMhirYssr~~A~KALsk---ng~ii~g~vm 261 (350)
T KOG4285|consen 202 VFGFPPGQVSIVLNLFSRCGEVVKHVTPSN-------GNWMHIRYSSRTHAQKALSK---NGTIIDGDVM 261 (350)
T ss_pred EeccCccchhHHHHHHHhhCeeeeeecCCC-------CceEEEEecchhHHHHhhhh---cCeeeccceE
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.28 E-value=5.1 Score=36.98 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred cccchhh-hhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC
Q 003749 255 FRSTWHK-EREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRAR---GIEPT 330 (798)
Q Consensus 255 ~~~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 330 (798)
.++.|-+ +.+.|++.|..+-..... +.......+..|....|.++++.++-+..+. +-.+|
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~~~~l---------------~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n 177 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEGTPEL---------------ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN 177 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcCCCCC---------------CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC
Q ss_pred HHHHHHHHHHHHccCChHHHH
Q 003749 331 LHVYTNLIHAYAVGRDMEEAL 351 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~ 351 (798)
..++.+|+..|.+.|+++.|.
T Consensus 178 ~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHHhcchhhhh
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.99 E-value=36 Score=33.23 Aligned_cols=226 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHCC--------CCCCHHHHHHHH-HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 318 TFENMRARG--------IEPTLHVYTNLI-HAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (798)
Q Consensus 318 ~~~~~~~~~--------~~~~~~~~~~ll-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (798)
+|..+.+.| ++-|...+|+|+ +-=.+...++++++-.++.- |-.--...|..+...|++.++.+.+.++
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHhc----CCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHH
Q 003749 389 FEEAKER----HATLNAIIYGN-IIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY--TIIGNEEKCLIVFER 461 (798)
Q Consensus 389 ~~~~~~~----~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~ 461 (798)
.++..+. |.+.|+..... |...|....-+++-++..+.|+++|...+..--.-.-.+- ....++.+|-.+|.+
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 462 LKECGFSPSIISYGCLINLYTKIGKVS--------------KALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFA 527 (798)
Q Consensus 462 ~~~~~~~~~~~~~~~li~~~~~~g~~~--------------~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 527 (798)
....--.....+|........-.|-+. +.+.++..-.+.+ +.....+-+..|--.|++.....
T Consensus 218 ~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~---sl~~l~~SLy~cdY~~~F~~ll~ 294 (412)
T COG5187 218 ILPTFESSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLG---SLVQLATSLYECDYGGDFMNLLY 294 (412)
T ss_pred HhccccccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhh---hHHHHHHHHHHhccchhhHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003749 528 VFEDVMRDGLKPDVVLYNNIIRAFCG 553 (798)
Q Consensus 528 ~~~~~~~~g~~~~~~~~~~li~~~~~ 553 (798)
+|...++ +....+.-.+.|++
T Consensus 295 ~~~n~L~-----~d~fl~rh~d~fvR 315 (412)
T COG5187 295 LFCNSLQ-----DDVFLGRHVDLFVR 315 (412)
T ss_pred HHHhhcc-----chHHHHHHHHHHHH
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 798 | ||||
| 2fy1_A | 116 | A Dual Mode Of Rna Recognition By The Rbmy Protein | 1e-06 | ||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 7e-04 |
| >pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein Length = 116 | Back alignment and structure |
|
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.3 bits (209), Expect = 4e-17
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 3/140 (2%)
Query: 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLK 689
A + D A SP E ++ + L A K
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 690 ACCKSGRMQSALAVTKEMSAQKIPR---NTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746
C + ++ A + Q+ R +YN ++ GWAR+G E ++ +K G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 747 VQPDVHTYTSFINACSKAGD 766
+ PD+ +Y + + +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQ 215
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 83.7 bits (205), Expect = 1e-16
Identities = 26/214 (12%), Positives = 63/214 (29%), Gaps = 4/214 (1%)
Query: 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549
A + + + + + L+ A + L +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 550 AFCGMGNMDRAIHIV---KEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606
+ A H++ +++R T + ++ G+AR G K + + M++ +G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 607 CIPTVHTFNALILGLVEKRQMEKAIE-ILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665
P + ++ A + + + Q IE L++M+ G+ ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699
+ LL+ S
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 5e-16
Identities = 22/220 (10%), Positives = 57/220 (25%), Gaps = 4/220 (1%)
Query: 560 AIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619
A + ++ P ++ + ++ A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 620 GLVEKRQMEKAIEILD---EMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676
+ Q+ A +L Y +M G+A G + +++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 677 LELDVFTYEALLKACCKSGR-MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEA 735
L D+ +Y A L+ + + + ++MS + + +L+ R +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 736 ADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPM 775
+ P + + + +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 5e-16
Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 4/188 (2%)
Query: 567 MQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRR---SGCIPTVHTFNALILGLVE 623
+ + + + ++ A + + + T+ +NA++LG
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFE-YFTKLRNEGLELDVF 682
+ ++ + +L + AG++P+ +Y + E ++ EGL+L
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 683 TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742
LL ++ +++ V S + L+ + L +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
Query: 743 KQEGVQPD 750
K +
Sbjct: 298 KTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.5 bits (168), Expect = 3e-12
Identities = 18/177 (10%), Positives = 51/177 (28%), Gaps = 4/177 (2%)
Query: 293 KPSRREFGLMVNYYARRGDMHRARQT---FENMRARGIEPTLHVYTNLIHAYAVGRDMEE 349
++ + A R + TL +Y ++ +A +E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 350 ALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAADHWFEEAKERHATLNAIIYGNII 408
+ + +K+ G+ L++Y+ + + A + E+ + L A+ ++
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465
+ + ++ + P ++ + LK
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.4 bits (160), Expect = 3e-11
Identities = 15/237 (6%), Positives = 68/237 (28%), Gaps = 4/237 (1%)
Query: 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPID 437
++ + + A + ++ + ++ +++ +A + +
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 438 IYHMMMDGYTIIGNEEKCLIVFERLKEC---GFSPSIISYGCLINLYTKIGKVSKALEVS 494
+ + ++ Y ++ + + G + + V
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 495 KVMKSSGIKHNMKTYSMLINGFLKL-KDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG 553
++K +G+ ++ +Y+ + + +D + E + ++GLK + ++
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 554 MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT 610
+ + P ++ ++ ++ C+
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 3e-09
Identities = 23/317 (7%), Positives = 77/317 (24%), Gaps = 13/317 (4%)
Query: 292 KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEAL 351
+ + + R A + R P L+ ++
Sbjct: 53 QSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQ 112
Query: 352 SCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW---FEEAKERHATLNAIIYGNII 408
+ + + + A H +++ L +Y ++
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL-IVFERLKECGF 467
+ + ++ +++ G+ + Y + + + E++ + G
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFA 527
+ L++ + + +V S L+ +
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
Query: 528 VFEDVMRDGLKPDVVLY---------NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRT 578
+ + + L+ ++ + + A +K ++ + + R
Sbjct: 293 LHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRA 352
Query: 579 FMPIIHGFARAGEMKRA 595
+ R R
Sbjct: 353 LRETKNRLEREVYEGRF 369
|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 2e-16
Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++F+G +P K+ ++E + + +VI+ + KN GF FV Y+ A A
Sbjct: 10 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 69
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNG 252
+ + ++ G + V + +V ++G
Sbjct: 70 RKLMPGRIQLWGHQIAVDWAEPEI-DVDEDVMETVSGPSSG 109
|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 1e-15
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 116 LQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQF 175
P+S + E S + + ++VG L + ++ F F
Sbjct: 28 SNLPESVAYTCVNCTERHVDGGSGGSGGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPF 87
Query: 176 GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G I ++ + Y EK+ GF FV ++ +A+ + E GR + V
Sbjct: 88 GDITDIQIPLDYET-EKHRGFAFVEFELAEDAAAAIDN--MNESELFGRTIRV 137
|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-15
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
+S + + + KI V N+P + + E F FG +K V L K + GFGFV
Sbjct: 4 GSSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFV 63
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAG 249
+ K A A+ +GR L + A+ +G
Sbjct: 64 DFITKQDAKKAFNALC-HSTHLYGRRLVL---------EWADSEVTVQSG 103
|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 8e-15
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
SS ++ + + +FVGNL +++ ++ E F Q GP+ V + K K F
Sbjct: 2 SSGSSGMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPK--SF 59
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
GFV + P + A+ +G+ +GR + V
Sbjct: 60 GFVCFKHPESVSYAIA--LLNGIRLYGRPINV 89
|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-14
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
K+F+GNLP + + F Q+G + +IK +GFV + A +
Sbjct: 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---------NYGFVHIEDKTAAE 56
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A++ + HG + V+ +
Sbjct: 57 DAIRN--LHHYKLHGVNINVEASKNKS 81
|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 2e-14
Identities = 27/138 (19%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 127 IPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG 186
+ ++ R ++E ++ ++VGNL + + + E F + G IK +I+
Sbjct: 15 VELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD 74
Query: 187 YNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARW 246
+ GF FV Y A ++AM+ + +G R++ D G + ++
Sbjct: 75 KMK-KTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRTDWDAGFK------EGRQY 125
Query: 247 VAGNNGEEFRSTWHKERE 264
G +G + R + ++ +
Sbjct: 126 GRGRSGGQVRDEYRQDYD 143
|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 3e-14
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVGN+ + F + G + ++K + FV + A K+A+
Sbjct: 11 KIFVGNVSAACTSQELRSLFERRGRVIECDVVK---------DYAFVHMEKEADAKAAIA 61
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKN 238
+G E G+ + V+L + K+
Sbjct: 62 Q--LNGKEVKGKRINVELSTKGQKKS 85
|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-14
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ ++VG L + ++ F FG I ++ + Y EK+ GF FV ++
Sbjct: 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET-EKHRGFAFVEFELAEDAA 63
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
+A+ + E GR + V N A+
Sbjct: 64 AAIDN--MNESELFGRTIRV---------NLAK 85
|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-14
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ +I+VGNLP I+ + + F ++G I+++ L F FV ++ P +
Sbjct: 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG----GPPFAFVEFEDPRDAE 75
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A+ DG ++ G L V+ R
Sbjct: 76 DAVYG--RDGYDYDGYRLRVEFPRSGR 100
|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 5e-14
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ K+ VGN+ + F ++GP+ ++K + FV +
Sbjct: 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---------DYAFVHMERAEDAV 58
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A++ D EF G+ + V+L R
Sbjct: 59 EAIRG--LDNTEFQGKRMHVQLSTSRL 83
|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 5e-14
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-----IKGYNNFE- 191
S +S + E I+V L + + + +FF+Q G +K I Y + E
Sbjct: 2 SSGSSGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET 61
Query: 192 -KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGN 250
K G V Y+ P K+A++ FDG +F G L V + A + +G
Sbjct: 62 GKPKGDATVSYEDPPTAKAAVEW--FDGKDFQGSKLKV---------SLARKKPPMNSGP 110
Query: 251 NG 252
+
Sbjct: 111 SS 112
|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 9e-14
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S +E Q+ ++VG L + + L+ E F Q GP+ N + K ++ G+G
Sbjct: 2 SSGSSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT-GQHQGYG 60
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
FV + A+K D ++ +G+ + V
Sbjct: 61 FVEFLSEEDADYAIKI--MDMIKLYGKPIRVNKASAHNKNLSGP 102
|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-13
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 130 AENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN 189
+ S +TS E+ K+F+ LP K + E + G +K++ L+
Sbjct: 2 SSGSSGVFRYSTSLEKH------KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAG 55
Query: 190 FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
K G +V Y+ + A+ DG+ ++ V
Sbjct: 56 KPK--GLAYVEYENESQASQAVMK--MDGMTIKENIIKV 90
|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-13
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
+S + ++VG L + ++ F FG I ++ + Y EK+ GF FV
Sbjct: 1 GSSGSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET-EKHRGFAFV 59
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
++ +A+ + E GR + V
Sbjct: 60 EFELAEDAAAAIDN--MNESELFGRTIRV 86
|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-13
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 139 LATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK-----NVILIKGYNNFE-- 191
+ IFV L + V ++F+Q G IK +I Y + E
Sbjct: 1 MGHHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG 60
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
K G V +D P + K+A+ FDG EF G + V
Sbjct: 61 KLKGEATVSFDDPPSAKAAIDW--FDGKEFSGNPIKV 95
|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-13
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+ +G L + K +ME F +G IK + + + + G+ +V ++ P + A+K
Sbjct: 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65
Query: 213 AVEFDGVEFHGRVLTV 228
+ DG + G+ +T
Sbjct: 66 HM--DGGQIDGQEITA 79
|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-13
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S E F Q ++FVGNLP I + + + F ++G V + K +K GFG
Sbjct: 2 SSGSSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DK--GFG 54
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
F+ + + A E D + G+ L V
Sbjct: 55 FIRLETRTLAEIAKV--ELDNMPLRGKQLRV 83
|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 3e-13
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 18/115 (15%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-----IKGYNNFEKNV--GFG 197
E + IFV L + V ++F+Q G IK I Y + E G
Sbjct: 1 EQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEA 60
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNG 252
V +D P + K+A+ FDG EF G + V + A RA + G
Sbjct: 61 TVSFDDPPSAKAAIDW--FDGKEFSGNPIKV---------SFATRRADFNRGGGN 104
|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-13
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K++VGNL K + F +GP++ V + + GF FV ++ P + A++
Sbjct: 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP------GFAFVEFEDPRDAEDAVR 55
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
DG G + V+L G
Sbjct: 56 G--LDGKVICGSRVRVELSTGMP 76
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 4e-13
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG 203
E +E +F+GNL + + ++ ++ N FG+V ++
Sbjct: 6 EGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG--TNRKFGYVDFES 63
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
KA+E G++ G + ++ GR K
Sbjct: 64 AED---LEKALELTGLKVFGNEIKLEKPKGRDSKKVRA 98
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-09
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
++ + R + NL I + + E F I+ V + K+ G ++
Sbjct: 88 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYI 141
Query: 200 IYDGPAAEKSAMKAVE-FDGVEFHGRVLTVKL 230
+ A A K +E G E GR +++
Sbjct: 142 EFKSEA---DAEKNLEEKQGAEIDGRSVSLYY 170
|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 5e-13
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 17/121 (14%)
Query: 112 PAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEF 171
A +Q S+ A + S EE + + ++VGN+ +
Sbjct: 2 IAPCMQTTHSK-----MTAGAYTEGPPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAH 56
Query: 172 FRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227
F G I + ++ G G+ ++ + + AV D F GR +
Sbjct: 57 FSSCGSINRITILCDKFSG-----HPKGYAYIEFAERNSVD---AAVAMDETVFRGRTIK 108
Query: 228 V 228
V
Sbjct: 109 V 109
|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 6e-13
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 9/142 (6%)
Query: 95 RLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKI 154
R++ P P P S+ PD S E E K+
Sbjct: 35 RVNRGGGPRRNRPAIARGGRNRPAPYSRPKPL-PDKWQHDLFDSGCGGGEGVE--TGAKL 91
Query: 155 FVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214
V NL + + E F +FG +K + Y+ +++G V ++ A A+KA+
Sbjct: 92 LVSNLDFGVSDADIQELFAEFGTLKKAAVD--YDRSGRSLGTADVHFERRA---DALKAM 146
Query: 215 -EFDGVEFHGRVLTVKLDDGRR 235
++ GV GR + ++L +
Sbjct: 147 KQYKGVPLDGRPMDIQLVASQI 168
|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-13
Identities = 13/89 (14%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++ L + +++ + + R++G ++ V ++ K++G V++ + A +
Sbjct: 8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT-RKHLGLARVLFTST---RGAKE 63
Query: 213 AVE-FDGVEFHGRVLTVKLDDGRRLKNKA 240
V+ G ++ +LD + + K
Sbjct: 64 TVKNLHLTSVMGNIIHAQLDIKGQQRMKY 92
|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Length = 96 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-13
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 143 QEETEFRQEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
E + ++F+GNLP + K + F +G I + + FGF+ +
Sbjct: 2 TEMHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN---------AFGFIQF 52
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
D P + + A++ G+ L +++
Sbjct: 53 DNPQSVRDAIE--CESQEMNFGKKLILEVSSSNA 84
|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Length = 110 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 7e-13
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+S T++ + ++F+GNL +KK V F ++G + + K
Sbjct: 11 KLQASNVTNKNDP-KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHK------- 62
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
G+ FV Y ++A+ +G G+ L + + +
Sbjct: 63 --GYAFVQYSNERHARAAVLG--ENGRVLAGQTLDINMAGEPK 101
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 8e-13
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K++VGNL N K + F +GP+++V + + GF FV ++ P A++
Sbjct: 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP------GFAFVEFEDPRDAADAVR 128
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
E DG G + V+L +G +
Sbjct: 129 --ELDGRTLCGCRVRVELSNGEK 149
|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-12
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S R +FV NL + + E F G + +++ + + G G
Sbjct: 2 SSGSSGALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSR--GIG 59
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231
V ++ A+ F+G R + VK+D
Sbjct: 60 TVTFEQSIEAVQAIS--MFNGQLLFDRPMHVKMD 91
|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-12
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S ++ + +F+ NL ++ + E +QFG +K V ++ + E + G
Sbjct: 2 SSGSSGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT-EHSKGCA 60
Query: 198 FVIYDGPAAEKSAMKA----VEFDGVEFHGRVLTVKL 230
F + A + + A E G++ GR L V L
Sbjct: 61 FAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDL 97
|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-12
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S ++ V N+P + + + F QFG I +V +I N + GFG
Sbjct: 2 SSGSSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---NERGSKGFG 58
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
FV ++ A A + G GR + V
Sbjct: 59 FVTFENSADADRAREK--LHGTVVEGRKIEV 87
|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Length = 139 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-12
Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 17/131 (12%)
Query: 100 LSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNL 159
+S P P + Q Q Q + + +Q E + V +
Sbjct: 1 MSQIPLVSQYDPYGQTAQLQQLQ----------QQQQQHIPPTQMNPEPDVLRNLMVNYI 50
Query: 160 PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKSAMKAVEFD 217
P + + + + F ++GPI++V ++ + E G+GFV + ++ + A+ +
Sbjct: 51 PTTVDEVQLRQLFERYGPIESVKIVC---DRETRQSRGYGFVKFQSGSSAQQAIAG--LN 105
Query: 218 GVEFHGRVLTV 228
G + L V
Sbjct: 106 GFNILNKRLKV 116
|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG 195
S L E +E +F+GNL + + ++ ++ N
Sbjct: 2 SHMLEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG--TNRK 59
Query: 196 FGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234
FG+V + + + KA+E G++ G + ++ GR
Sbjct: 60 FGYVDF---ESAEDLEKALELTGLKVFGNEIKLEKPKGR 95
|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 3e-12
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ +++ P + E+ G + N+ + + + K G FV++ + +
Sbjct: 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFK--GSIFVVF---DSIE 63
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
SA K VE G ++ L + D K E +
Sbjct: 64 SAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQN 100
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 143 QEETEFRQEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
+ ++ + +I + NL + ++L+ E F FG I+ + + G N F+++
Sbjct: 202 RTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVF 261
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
+ SA +A++ + R ++V L
Sbjct: 262 ENKD---SAERALQMNRSLLGNREISVSL 287
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK-NVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
E +++ N P + + + + + ++ L N + F ++
Sbjct: 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFN--TSRRFAYIDVTSKED-- 171
Query: 209 SAMKAVE-FDGVEFHGRVLTVKLDDGRRLKNKAEVRA 244
A VE +G++ G L K+ + + +
Sbjct: 172 -ARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSAT 207
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 133 RSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+ +S ++ T R+ + V NLP ++ V ++F+ GPI +V + + +K
Sbjct: 23 AAGLTSKKANEALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD---SLKK 79
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRL 236
N F + + A+ A+ + V L
Sbjct: 80 NFRFARIEFA---RYDGALAAITKTHKVVGQNEIIVSHLTECTL 120
|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Length = 135 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 4e-12
Identities = 27/146 (18%), Positives = 39/146 (26%), Gaps = 29/146 (19%)
Query: 83 PSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATS 142
HS S P Q+ + +SL
Sbjct: 5 HHHHHHS-----------SGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSL--- 50
Query: 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYD 202
V NL + F ++G + +V + + E GF FV +
Sbjct: 51 ------------KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESR-GFAFVRFH 97
Query: 203 GPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ AM A DG GR L V
Sbjct: 98 DKRDAEDAMDA--MDGAVLDGRELRV 121
|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-12
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
GK+F+G L + ++ F + GPI V+LIK + + GF F+ ++ PA K+
Sbjct: 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR--GFAFITFENPADAKN 63
Query: 210 AMKAVEFDGVEFHGRVLTVK 229
A K + +G HG+ + V+
Sbjct: 64 AAK--DMNGKSLHGKAIKVE 81
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 5e-12
Identities = 94/660 (14%), Positives = 188/660 (28%), Gaps = 181/660 (27%)
Query: 190 FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR---W 246
FE F D KS + E D + + D A W
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHI--------IMSKD-------AVSGTLRLFW 69
Query: 247 VAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYY 306
+ EE ++F + V + IK R+ + Y
Sbjct: 70 TLLSKQEEMV-----------QKFVEEVLRINYKFLM-----SPIKTEQRQPSMMTRMYI 113
Query: 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL 366
+R ++ Q F Y V R L K+++ +E+
Sbjct: 114 EQRDRLYNDNQVFAK-------------------YNVSR-----LQPYLKLRQALLELRP 149
Query: 367 VTYSIIVG--GFAK--MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN--MERA 420
+I G G K + + + + I + N+ C + +E
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-----FKIFWLNL--KNCNSPETVLEML 202
Query: 421 EALVRDME---EEGIDAPIDIYHMMMDGYT----IIGNE--EKCLIVFERLKECGFSPSI 471
+ L+ ++ D +I + ++ ++ E CL+V ++ +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----NAKA 258
Query: 472 ISY---GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAV 528
+ C I L T+ +V+ L + S H+M + ++
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM--------TLTP-DEVKSLLLK 309
Query: 529 FEDVMRDGLKPDVVLYN----NIIRAFCGMGNMDRAIHI--VKEMQKERHRPTSRTFMPI 582
+ D L +V+ N +II D K + ++ + + +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 583 IHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEM---TL 639
+ E ++ + + S IPT + + +++ M +++++ +L
Sbjct: 366 L----EPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVM----VVVNKLHKYSL 416
Query: 640 AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD---VFTYEALLKACCKSGR 696
P E T +I Y E KL NE L V Y
Sbjct: 417 VEKQPKESTI-SIPSIY---------LELKVKLENE-YALHRSIVDHYNIPKTFDSDD-- 463
Query: 697 MQSALAVTKE------------MSAQKIPRNTFVYNILID-GWARR-----GDVWEA--- 735
L + + R T + +D + + W A
Sbjct: 464 ----LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 736 -ADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPMLTKFYLFSFIWFLITMNSH 794
+ +QQ+K Y +I + P + + + + FL + +
Sbjct: 520 ILNTLQQLK---------FYKPYICD-----------NDPKYER-LVNAILDFLPKIEEN 558
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 5e-12
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
+ K+F+G LPN++ V E FGP+K L+K + G+ F Y
Sbjct: 85 PHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT-GLSKGYAFCEY 143
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
A+ + +G++ + L V+
Sbjct: 144 VDINVTDQAIAGL--NGMQLGDKKLLVQ 169
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDG 203
+++VGN+P I + +M+FF + + G + F F+ +
Sbjct: 1 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRS 60
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVK 229
+A+ FDG+ F G+ L ++
Sbjct: 61 VDE---TTQAMAFDGIIFQGQSLKIR 83
|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 5e-12
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 8/104 (7%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN 193
S SS S ++VGNLP + + R+ G + + +G
Sbjct: 2 SSGSSGPGSPPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGP------ 55
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLK 237
F+ Y AA + A+ G+ L V L +R K
Sbjct: 56 RRRAFLHYPDSAAAQQAVSC--LQGLRLGTDTLRVALARQQRDK 97
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 6e-12
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 128 PDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGY 187
+ +PS + K+F+G LPN++ V E FGP+K L+K
Sbjct: 91 LPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150
Query: 188 NNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
+ G+ F Y A+ +G++ + L V+
Sbjct: 151 AT-GLSKGYAFCEYVDINVTDQAIAG--LNGMQLGDKKLLVQR 190
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-11
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG------YNNFEKNVGFGFVIYDGPAA 206
+++VGN+P I + +M+FF + + G N +K F F+ +
Sbjct: 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK--NFAFLEFRSVDE 63
Query: 207 EKSAMKAVEFDGVEFHGRVLTVKL-DDGRRLKNKAEVRARWVAGNNGEEFRSTWHK 261
+A+ FDG+ F G+ L ++ D + L +E + +V G + HK
Sbjct: 64 ---TTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHK 116
|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Length = 87 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 7e-12
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG----YNNFEKNVGFGFVIYDG 203
+++VGN+P I + +M+FF + + G ++ F F+ +
Sbjct: 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRS 62
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVK 229
+A+ FDG+ F G+ L ++
Sbjct: 63 VDE---TTQAMAFDGIIFQGQSLKIR 85
|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 7e-12
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
+ ++FV P +++ + E F FGP+K V ++ GF FV +
Sbjct: 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN---------GFAFVEF 72
Query: 202 DGPAAEKSAMKAV-EFDGVEFHGRVLTV 228
+ SA KA+ E G F + L V
Sbjct: 73 EEAE---SAAKAIEEVHGKSFANQPLEV 97
|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 7e-12
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+++ NLP I + + F ++GPI+ + + + G +V+Y+ K+A+
Sbjct: 11 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT----PETRGTAYVVYEDIFDAKNAVD- 65
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
G R L V + R K + + +
Sbjct: 66 -HLSGFNVSNRYLVVLYYNANRAFQKMDTKKK 96
|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Length = 97 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 8e-12
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 153 KIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++F+GNLP + K + F +G I + + FGF+ +D P +S
Sbjct: 24 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN---------AFGFIQFDNP---QSVR 71
Query: 212 KAVE-FDGVEFHGRVLTVKLDDGRR 235
A+E G+ L +++
Sbjct: 72 DAIEXESQEMNFGKKLILEVSSSNA 96
|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 9e-12
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FV P + + E+F FGP+ +V++ K +K F V A +
Sbjct: 10 SVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK-----DKG-VFAIVEMGDVGARE---A 60
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
+ G L V+ + + ++ A +
Sbjct: 61 VLSQSQHSLGGHRLRVRPREQKEFQSPASKSPK 93
|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 9e-12
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
G++FV NL + + + F +GP+ + +K GF FV + P
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT-KKPKGFAFVTFMFPEHAVK 65
Query: 210 AMKAVEFDGVEFHGRVLTV 228
A V DG F GR+L V
Sbjct: 66 AYAEV--DGQVFQGRMLHV 82
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
E + Q ++FVGNLP I + F ++G V + + GFGF+
Sbjct: 11 FLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-------GFGFI 63
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ + A E DG R L +
Sbjct: 64 RLESRTLAEIAKA--ELDGTILKSRPLRI 90
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ V NL + L+ + F QFGP++ +++ ++ + G GFV + +
Sbjct: 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV--VDDRGRATGKGFVEFAAKPPAR 151
Query: 209 SAMKAVEFDGVEF---HGRVLTVKLDDGR 234
A++ DG R + V+ +
Sbjct: 152 KALERCG-DGAFLLTTTPRPVIVEPMEQF 179
|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 133 RSPSSSLATSQEETEFRQEG-KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
S S TE + + ++ V N+P + + + F QFG I +V +I N
Sbjct: 10 HSSGLVPRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---NER 66
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ GFGFV ++ A A + + G GR + V
Sbjct: 67 GSKGFGFVTFENSADADRARE--KLHGTVVEGRKIEV 101
|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 2e-11
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVG 195
+S EGK+FVG L + + + F ++G I V+++K ++ G
Sbjct: 1 GSSGSSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ-----RSRG 55
Query: 196 FGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
FGFV ++ K AM A +G GR + V
Sbjct: 56 FGFVTFENIDDAKDAMMA--MNGKSVDGRQIRVD 87
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ + V NLP + + E R FG ++ L+ ++ G+GF Y +
Sbjct: 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT-GQSKGYGFAEYMKKDS-- 149
Query: 209 SAMKAVE-FDGVEFHGRVLTVK 229
A +A G R L V
Sbjct: 150 -AARAKSDLLGKPLGPRTLYVH 170
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
E +FR KI + LP + V + + +K + K G FV
Sbjct: 13 EHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD-------KYKGTAFVTL 64
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTV 228
++A+ F R L+V
Sbjct: 65 LNGEQAEAAIN--AFHQSRLRERELSV 89
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 140 ATSQEETEFRQEGK-IFVGNLPNWIK-KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
+ + T + + V LP + L G + K GF
Sbjct: 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLK--GFA 229
Query: 198 FVIYDGPAAEKSAMKAV-EFDGVEFHGRVLTVKL 230
+ Y+ + A +A + DG+ G L V
Sbjct: 230 VLEYETA---EMAEEAQQQADGLSLGGSHLRVSF 260
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-11
Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 132 NRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
+ +Q + +++VG++ + + + + F FGPIK++ +
Sbjct: 9 GGQQMGRGSAAQRQGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT-M 67
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK--LDDGRRLKNKAEVRARWVAG 249
K+ GF FV Y+ P A + A++ + + V GR + V + G+ ++ A
Sbjct: 68 KHKGFAFVEYEVPEAAQLALEQM--NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 125
Query: 250 NN 251
N
Sbjct: 126 NR 127
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 133 RSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+ Q E R +I+V ++ + + F FG IK+ L + K
Sbjct: 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTT-GK 165
Query: 193 NVGFGFVIYDGPAAEKSAMKAVE-FDGVEFHGRVLTVKL 230
+ G+GF+ Y+ + + AV + + G+ L V
Sbjct: 166 HKGYGFIEYEKAQS---SQDAVSSMNLFDLGGQYLRVGK 201
|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-11
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 34/131 (25%)
Query: 117 QEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFG 176
+ +++ +DE+ RS +FV ++ ++ + E F +G
Sbjct: 6 ERVRNEDDDELEPGPQRSVEGW--------------ILFVTSIHEEAQEDEIQEKFCDYG 51
Query: 177 PIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232
IKN+ L G++ G+ V Y+ +A +A +G E G+ + V
Sbjct: 52 EIKNIHLNLDRRTGFSK-----GYALVEYETHKQALAAKEA--LNGAEIMGQTIQV---- 100
Query: 233 GRRLKNKAEVR 243
+ V+
Sbjct: 101 -----DWCFVK 106
|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-11
Identities = 13/80 (16%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+++G++P + +++ GP+ N+ ++ G ++ G+ F+ + +
Sbjct: 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTG-----RSKGYAFIEFRDLESSA 58
Query: 209 SAMKAVEFDGVEFHGRVLTV 228
SA++ +G + R L
Sbjct: 59 SAVRN--LNGYQLGSRFLKC 76
|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 5e-11
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
+ KIFVG +P+ + + E+F++FG + V++I ++ GFGF+ ++ E+S
Sbjct: 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK-QRPRGFGFITFE---DEQS 64
Query: 210 AMKAVEFDGVEFHGRVLTVK 229
+AV + G+ + VK
Sbjct: 65 VDQAVNMHFHDIMGKKVEVK 84
|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 6e-11
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 20/109 (18%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+FV + + + + F ++G IKN+ L GY G+ V Y+ +
Sbjct: 24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK-----GYTLVEYETYKEAQ 78
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEFRS 257
+AM+ +G + G+ ++V + VR G RS
Sbjct: 79 AAMEG--LNGQDLMGQPISV---------DWCFVRGPPKGKRRGGRRRS 116
|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 6e-11
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 121 SQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN 180
+ G D + + K+ V NL + + E F +FG +K
Sbjct: 5 TGGQQMGRDPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKK 64
Query: 181 VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
+ Y+ +++G V ++ A AMK ++ GV GR + ++L +
Sbjct: 65 AAVD--YDRSGRSLGTADVHFERRADALKAMK--QYKGVPLDGRPMDIQLVASQI 115
|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 7e-11
Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEK 192
SS ++ + ++V NLP + + + F ++G + V ++K K
Sbjct: 2 SSGSSGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTR-----K 56
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ G F+++ + ++ +A + + GRV+
Sbjct: 57 SKGVAFILFLDKDSAQNCTRA--INNKQLFGRVIKA 90
|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 7e-11
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
F+GNLP + + + EFFR I V L + +N E+ GFG+ ++ S +
Sbjct: 21 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLD---SLLS 76
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
A+ + R + V + D +
Sbjct: 77 ALSLNEESLGNRRIRVDVADQAQ 99
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 7e-11
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
A ++E + + GKIFVG + ++ EFF Q+G I + L+ + ++ GFGFV
Sbjct: 78 AIPRDEQD--KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT-GQSRGFGFV 134
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
YD + + + + ++F R + +K
Sbjct: 135 TYD---SADAVDRVCQNKFIDFKDRKIEIK 161
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
++ K+F+G L + + E+F ++G + ++ ++K ++ GFGF+ ++ P++
Sbjct: 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT-GRSRGFGFLSFEKPSSVD 59
Query: 209 SAMKAV-EFDGVEFHGRVLTVK 229
+K D G+V+ K
Sbjct: 60 EVVKTQHILD-----GKVIDPK 76
|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Length = 156 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 8e-11
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 107 PPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKH 166
PPPP Q EP + N++ P + ++VG+ W
Sbjct: 23 MEPPPPVRQ--EPSPKPNNKTPAILYTYSGLRNRRA----------AVYVGSFSWWTTDQ 70
Query: 167 LVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224
+++ R G +V+ +K N ++ G+ V+ + ++ G +G
Sbjct: 71 QLIQVIRSIGVY-DVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL--LPGKVLNGE 127
Query: 225 VLTVKLDDGRRLKNKAEVRAR 245
+ V+ R+ ++ E +AR
Sbjct: 128 KVDVRP-ATRQNLSQFEAQAR 147
|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 9e-11
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+FV + + + + F ++G IKN+ L GY G+ V Y+ +
Sbjct: 25 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK-----GYTLVEYETYKEAQ 79
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRA 244
+AM+ +G + G+ ++V + VR
Sbjct: 80 AAMEG--LNGQDLMGQPISV---------DWCFVRG 104
|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 9e-11
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
SS ++ E + Q ++VGNL + + L+++ F Q GP K+ +I N +
Sbjct: 2 SSGSSGMMEDDG-QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT---EHTSNDPY 57
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
FV + +A+ A+ +G + G+ + V
Sbjct: 58 CFVEFYEHRDAAAALAAM--NGRKILGKEVKV 87
|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 9e-11
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+IFV NLP ++ + F + G + + N K G G V ++ P + A
Sbjct: 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSK--GCGVVKFESPEVAERAC 65
Query: 212 KAVEFDGVEFHGRVLTVKLD 231
+ +G++ GR + V++D
Sbjct: 66 R--MMNGMKLSGREIDVRID 83
|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Length = 115 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 9e-11
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 132 NRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
+ S+ + + E + +F+ +LP +++ F FG + + +
Sbjct: 6 SGLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQT-N 64
Query: 192 KNVGFGFVIYDGPAAEKSAMKAV-EFDGVEFHGRVLTVKL 230
+ FGFV YD P SA A+ +G + + L V+L
Sbjct: 65 LSKCFGFVSYDNPV---SAQAAIQSMNGFQIGMKRLKVQL 101
|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYD 202
GK+ V NL + + E F +FG +K + + G V ++
Sbjct: 21 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSL--GTADVHFE 78
Query: 203 GPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
A AMK +++GV GR + ++L
Sbjct: 79 RKADALKAMK--QYNGVPLDGRPMNIQL 104
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 6/122 (4%)
Query: 110 PPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEE---TEFRQEGKIFVGNLPNWIKKH 166
+ + + E + + S + + V NL
Sbjct: 26 AEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPD 85
Query: 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226
+ F ++G + +V + + E GF FV + + AM A DG GR L
Sbjct: 86 TLRRVFEKYGRVGDVYIPRDRYTKESR-GFAFVRFHDKRDAEDAMDA--MDGAVLDGREL 142
Query: 227 TV 228
V
Sbjct: 143 RV 144
|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Length = 105 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S E+ ++ K+FVG L + V+ F+ FG I +++G + K G
Sbjct: 2 SSGSSGSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK--GCA 59
Query: 198 FVIYDGPAAEKSAMKAVEFDG---VEFHGRVLTVKLDDGRR 235
FV + ++A+ A G + L VK D +
Sbjct: 60 FVKFSSHTEAQAAIHA--LHGSQTMPGASSSLVVKFADTDK 98
|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAA 206
+ + V NL + F ++G + +V + + + GF FV +
Sbjct: 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPR-GFAFVRFHDRRD 67
Query: 207 EKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
+ A A+ DG E GR L V++ R
Sbjct: 68 AQDAEAAM--DGAELDGRELRVQVARYGR 94
|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-10
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 21/105 (20%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
++VG+L I + ++ F FG I N++L+K G ++ G+GF+ + +
Sbjct: 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTG-----RSKGYGFITFSDSECAR 61
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRA-RWVAGNNG 252
A++ +G E GR + V R ++G
Sbjct: 62 RALEQ--LNGFELAGRPMRV---------GHVTERLDGGSGPSSG 95
|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFV 199
+ R +FVGN+P + + + F + GP+ + L+ G K G+GF
Sbjct: 1 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG-----KPKGYGFC 55
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
Y SAM+ +G EF GR L V
Sbjct: 56 EYQDQETALSAMRN--LNGREFSGRALRV 82
|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Length = 118 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 109 PPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLV 168
P + + + +++ A + ++ E + +F+ +LP +
Sbjct: 5 PQFGSASALSTSPLASVALS-------AAAAAAAGKQIEGPEGCNLFIYHLPQEFTDTDL 57
Query: 169 MEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV-EFDGVEFHGRVLT 227
F FG + + + + FGFV +D P SA A+ +G + + L
Sbjct: 58 ASTFLPFGNVISAKVFIDKQT-SLSKCFGFVSFDNPD---SAQVAIKAMNGFQVGTKRLK 113
Query: 228 VKL 230
V+L
Sbjct: 114 VQL 116
|
| >2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 21/103 (20%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 130 AENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK---- 185
+ ++++A + ++ +++VG+L I + ++ F FG I+++ L+
Sbjct: 6 HHHSHMAAAMANNLQKGS-AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET 64
Query: 186 GYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G ++ G+GF+ + K A++ +G E GR + V
Sbjct: 65 G-----RSKGYGFITFSDSECAKKALEQ--LNGFELAGRPMKV 100
|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 37/131 (28%)
Query: 98 SKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVG 157
S+ PP P ++ + ++G
Sbjct: 2 SQTIGLPPQVNPQAVDHIIRSA---------PPRVTT-------------------AYIG 33
Query: 158 NLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217
N+P++ + ++ F+ FG I + G F+ YD + A+
Sbjct: 34 NIPHFATEADLIPLFQNFGFILDFKHYPEK-------GCCFIKYDTHEQAAVCIVAL--A 84
Query: 218 GVEFHGRVLTV 228
F GR L
Sbjct: 85 NFPFQGRNLRT 95
|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-10
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+ V L + + + E F ++GPI +V ++ ++ GF FV ++ K
Sbjct: 17 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-----RSRGFAFVYFENVDDAK 71
Query: 209 SAMKAVEFDGVEFHGRVLTV 228
A + +G+E GR + V
Sbjct: 72 EAKER--ANGMELDGRRIRV 89
|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-10
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+FVG + + + + FF ++G +K V +I K G+GFV +
Sbjct: 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSK--GYGFVSFYNDVD---VQ 64
Query: 212 KAVEFDGVEFHGRVLTVK 229
K VE + FHG+ L +
Sbjct: 65 KIVE-SQINFHGKKLKLG 81
|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 2e-10
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 5/123 (4%)
Query: 110 PPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVM 169
P D +P A + T + +++GNL W +
Sbjct: 27 PSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLT 86
Query: 170 EFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227
E G ++ IK + N ++ GF V A+ K M E HG+
Sbjct: 87 EAVHSLGVND-ILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL--LPKRELHGQNPV 143
Query: 228 VKL 230
V
Sbjct: 144 VTP 146
|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-10
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 22/141 (15%)
Query: 97 SSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFV 156
S P + + +G+ + + N P+ L V
Sbjct: 7 HHHHSSGLVPRGSHMASMTGGQQMGRGSRHVGNRANPDPNCCL---------------GV 51
Query: 157 GNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKSAMKAV 214
L + + + E F ++GPI +V ++ + + GF FV ++ K A +
Sbjct: 52 FGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKER- 107
Query: 215 EFDGVEFHGRVLTVKLDDGRR 235
+G+E GR + V +R
Sbjct: 108 -ANGMELDGRRIRVDFSITKR 127
|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-10
Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 29/150 (19%)
Query: 108 PPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEG---------KIFVGN 158
+ + +G D+ R S + E + E +FV +
Sbjct: 20 DQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTS 79
Query: 159 LPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214
+ ++ + E F +G IKN+ L G++ G+ V Y+ +A +A
Sbjct: 80 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK-----GYALVEYETHKQALAAKEA- 133
Query: 215 EFDGVEFHGRVLTVKLDDGRRLKNKAEVRA 244
+G E G+ + V + V+
Sbjct: 134 -LNGAEIMGQTIQV---------DWCFVKG 153
|
| >2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 3e-10
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 150 QEGKIFVGNLPNWIKKHLVM---EFFRQFGPIKNVILIK--GYNNFEKNVGFGFVIYDGP 204
Q+ +FV L + V+ E+F +FG I V++ Y + +V Y
Sbjct: 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 73
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTV 228
A++ V + V GR L
Sbjct: 74 EDALRAIQCV--NNVVVDGRTLKA 95
|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-10
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
F+GNLP + + + EFFR I V L + +N E+ GFG+ ++ S +
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLD---SLLS 72
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
A+ + + + V + D +
Sbjct: 73 ALSLNEESLGNKRIRVDVADQAQ 95
|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-10
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 15/111 (13%)
Query: 129 DAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYN 188
++ S EE + R +F L I+ + +FF G +++V +I
Sbjct: 6 SGKSPVREPVDNLSPEERDAR---TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS--- 59
Query: 189 NFEKNV----GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
++N G +V + S A+ G G + V+ +
Sbjct: 60 --DRNSRRSKGIAYVEFCEIQ---SVPLAIGLTGQRLLGVPIIVQASQAEK 105
|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 3e-10
Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S + ++ K+ + N+P ++ ++ Q+G +++ + N +
Sbjct: 2 SSGSSGSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQV----NTDSETAVV 57
Query: 198 FVIYDGPAAEKSAMKAVE-FDGVEFHGRVLTVKL 230
V Y A +A++ +G + L V
Sbjct: 58 NVTYSSK---DQARQALDKLNGFQLENFTLKVAY 88
|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-10
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEK 208
I V NL ++ + E FR FG I + L K + ++ GF F+ +
Sbjct: 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAK---DKTTGQSKGFAFISFHRREDAA 71
Query: 209 SAMKAVEFDGVEFHGRVLTV 228
A+ V G + +L V
Sbjct: 72 RAIAGV--SGFGYDHLILNV 89
|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWI--KKHLVMEFFRQFGPIKNVILIKGYNNFE 191
S SS + SQ++T F KIFVG LP + L ++F FG I+ ++I +
Sbjct: 3 SGSSGMHGSQKDTTFT---KIFVGGLP-YHTTDASLR-KYFEGFGDIEEAVVIT-----D 52
Query: 192 KNV----GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL-DDGRRLKNKAEVRARW 246
+ G+GFV A +A +A + GR V L G + ++ A
Sbjct: 53 RQTGKSRGYGFVTMADRA---AAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIG 109
Query: 247 VAG 249
V+G
Sbjct: 110 VSG 112
|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 6e-10
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KN 193
S L + R + NL I + + E F I+ V + K+
Sbjct: 1 SHMLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--------SQDGKS 52
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G ++ + A + ++ E G E GR +++
Sbjct: 53 KGIAYIEFKSEADAEKNLE--EKQGAEIDGRSVSL 85
|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 88 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-10
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+FVG + + + EFF Q+G + +V + K F FV + +
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK------PFRAFAFVTFADDQIAQ 56
Query: 209 SAMKAVEFDGVEFHGRVLTVK 229
S + + G + +
Sbjct: 57 SLCG----EDLIIKGISVHIS 73
|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 8e-10
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKS 209
+F+ NL + + F + G IK+ + K N + GFGFV Y P +
Sbjct: 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQK 65
Query: 210 AMKAVEFDGVEFHGRVLTVKL 230
A+K + G G L V++
Sbjct: 66 ALK--QLQGHTVDGHKLEVRI 84
|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 8e-10
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAA 206
+++ L +++ + +G I + I K G+GFV +D P+A
Sbjct: 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-----KCKGYGFVDFDSPSA 59
Query: 207 EKSAMKAVEFDGVEFHGRVLTV 228
+ A+ A ++
Sbjct: 60 AQKAVTA--LKASGVQAQMAKQ 79
|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Length = 90 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 9e-10
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 21/95 (22%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
I+VGNL V E F QFG + NV LI K GFGFV + +
Sbjct: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETK-----KPKGFGFVEMQEESVSE 57
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVR 243
A+ D +F GR + V +A +
Sbjct: 58 -AIAK--LDNTDFMGRTIRV---------TEANPK 80
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 9e-10
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYN-NFEKNVGFGFVIYDGPAAEKSA 210
K+FVG +P + + E F Q+G + + +++ + N ++ G FV + K+A
Sbjct: 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF---YTRKAA 60
Query: 211 MKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNN 251
++A H + + ++K + V
Sbjct: 61 LEAQN----ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRK 97
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 141 TSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVI 200
E+ ++ K+F+G + ++ + F FG I+ +++G + + G FV
Sbjct: 85 ADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR--GCAFVT 142
Query: 201 YDGPAAEKSAMKAV-EFDGVEFHGRVLTVKLDD 232
+ A ++A+KA+ + +E + VK D
Sbjct: 143 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 9e-10
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++VGNL I + ++ ++F+ GPI N+ ++ + KNV + FV Y A A
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIM--IDKNNKNVNYAFVEYHQSHD---ANIA 57
Query: 214 VE-FDGVEFHGRVLTV 228
++ +G + ++ +
Sbjct: 58 LQTLNGKQIENNIVKI 73
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGF 198
A +++ +FVG+L + + F+ F + ++ + G+GF
Sbjct: 76 AFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR--GYGF 133
Query: 199 VIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
V + ++AM ++ G + +GR L +
Sbjct: 134 VSFTSQDDAQNAMDSM--QGQDLNGRPLRINW 163
|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-09
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+++GNL + + + F ++ + G+ FV Y A++
Sbjct: 10 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KS--GYAFVDYPDQNWAIRAIE 62
Query: 213 AVEFDG-VEFHGRVLTVKLDDGRRLKN 238
G VE HG+++ V ++L++
Sbjct: 63 T--LSGKVELHGKIMEVDYSVSKKLRS 87
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V LP + + FR GPI +++ Y + G+ FV + + +
Sbjct: 5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKT-GYSYGYAFVDFTSEMD---SQR 60
Query: 213 AVE-FDGVEFHGRVLTV 228
A++ +G+ + L V
Sbjct: 61 AIKVLNGITVRNKRLKV 77
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVI 200
++ E ++ ++V NLP I + F ++G I IL + G FV
Sbjct: 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPR--GVAFVR 137
Query: 201 YDGPAAEKSAMKAVEFDGVEFHG--RVLTVKL 230
Y+ + A+ A + V G + L+V+L
Sbjct: 138 YNKREEAQEAISA--LNNVIPEGGSQPLSVRL 167
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG + ++H + ++F Q+G I+ + ++ + K GF FV +D S K
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS-GKKRGFAFVTFD---DHDSVDK 161
Query: 213 AVEFDGVEFHGRVLTVK 229
V +G V+
Sbjct: 162 IVIQKYHTVNGHNCEVR 178
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 9e-09
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
S+ E Q K+F+G L + F Q+G + + ++++ N +++ GFGFV Y
Sbjct: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT-KRSRGFGFVTY 62
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
A+ + GRV+ K R +
Sbjct: 63 ATVE---EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLT 103
|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 1e-09
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
I+VGN+ + F G + V ++ G GF ++ + + +
Sbjct: 8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSG-----HPKGFAYIEFSDKESVR 62
Query: 209 SAMKAVEFDGVEFHGRVLTVK 229
++ D F GR + V
Sbjct: 63 ---TSLALDESLFRGRQIKVI 80
|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-09
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S ++ + +FVG+L I + F FG I + ++K K+ G+G
Sbjct: 2 SSGSSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT-GKSKGYG 60
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL--DDGRRLKNKAEVRARWVAGNNG 252
FV + ++A++ + G GR + K+ E + ++G
Sbjct: 61 FVSFFNKWDAENAIQ--QMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQSGPSSG 115
|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-09
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
SS ++ ++ + K+F+G +P + + + F +FG I + ++K + G
Sbjct: 2 SSGSSGMKDHD---AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT-GMHKGC 57
Query: 197 GFVIYDGPAAEKSAMKAV-EFDGVEFHGRVLTVKLDDGRR 235
F+ Y + A A+ E + R + VK D
Sbjct: 58 AFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97
|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Length = 90 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-09
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSA 210
+++GNL W + E G + +++ IK + N ++ GF V A+ K
Sbjct: 3 ALYIGNLTWWTTDEDLTEAVHSLG-VNDILEIKFFENRANGQSKGFALVGVGSEASSKKL 61
Query: 211 MKAVEFDGVEFHGRVLTVK 229
M E HG+ V
Sbjct: 62 MDL--LPKRELHGQNPVVT 78
|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-09
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 132 NRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE 191
P S + +R I + NLP + + R+ + N
Sbjct: 13 GLVPRGSHMSKLPAKRYR----ITMKNLPEGCSWQDLKDLARENSLETTFSSV----NTR 64
Query: 192 KNVGFGFVIYDGPAAEKSAMKAVE-FDGVEFHGRVLTVKLDDGRRLKNKA 240
G G + + +E+ ++A+E + +EF G V+TV+ DD ++
Sbjct: 65 DFDGTGALEF---PSEEILVEALERLNNIEFRGSVITVERDDNPPPIRRS 111
|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S E + + N+P I K V++F +N + + +N + +G
Sbjct: 2 SSGSSGEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVL-VDNNGQGLGQA 60
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
V + E A K+ + +GR V +
Sbjct: 61 LVQF---KNEDDARKSERLHRKKLNGREAFVHV 90
|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-09
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKSA 210
+++ NL + + ++ F +F K + G F+ + A
Sbjct: 27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQF---RMMTGRMRGQAFITFPNKEIAWQA 83
Query: 211 MKAVEFDGVEFHGRVLTV 228
+ V +G + +G++L +
Sbjct: 84 LHLV--NGYKLYGKILVI 99
|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
S + + +FV NL N + + ++ + F QFG ++ V +K + F+ +
Sbjct: 2 SSGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK---------DYAFIHF 52
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNG 252
D AM+ E +G + G + + + K + R +G
Sbjct: 53 DERDGAVKAME--EMNGKDLEGENIEIVF--AKPPDQKRKERKAQRQAASG 99
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 135 PSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV 194
P S+ S ++VG+L + + ++ E F GPI ++ + + +++
Sbjct: 2 PLGSMNPSAPSY---PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT-RRSL 57
Query: 195 GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G+ +V + PA + A+ + G+ + +
Sbjct: 58 GYAYVNFQQPADAERALD--TMNFDVIKGKPVRI 89
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
+ G IF+ NL I + + F FG I + ++ N + G+GFV
Sbjct: 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN---GSKGYGFV 148
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTV-----KLDDGRRLKNKAE 241
++ A + A++ + +G+ + R + V + + L +A+
Sbjct: 149 HFETQEAAERAIEKM--NGMLLNDRKVFVGRFKSRKEREAELGARAK 193
|
| >3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Length = 89 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-09
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
K+FVG + + +FF Q+G + +V + K F FV +
Sbjct: 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK------PFRAFAFVTFADD 58
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTVK 229
+S + + G + +
Sbjct: 59 KVAQSLCG----EDLIIKGISVHIS 79
|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-09
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
R E ++ V LP + + R+ G + + + G G V + ++
Sbjct: 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEF---VRKE 61
Query: 209 SAMKAVE-FDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
AV D +F + ++ R
Sbjct: 62 DMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGR 99
|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-09
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++ G + + + L+ + F FG I + + G+ FV + + A+
Sbjct: 28 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-------GYSFVRFSTHESAAHAI-- 78
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
V +G G VK G+ +
Sbjct: 79 VSVNGTTIEGH--VVKCYWGKESPDMTS 104
|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-09
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S T + + + NL + + E F + IK G K+ G+
Sbjct: 2 SSGSSGNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNG-----KSKGYA 56
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKN 238
F+ + K A+ + + E GR + ++L R N
Sbjct: 57 FIEFASFEDAKEALNS--CNKREIEGRAIRLELQGPRGSPN 95
|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-09
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++VG L + I + + F QFG I+ + +++ F+ + A + A +
Sbjct: 14 TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-------QCAFIQFATRQAAEVAAE 66
Query: 213 AVEFDGVEFHGRVLTVK 229
F+ + +GR L VK
Sbjct: 67 KS-FNKLIVNGRRLNVK 82
|
| >2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Length = 75 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 7e-09
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPAAEK 208
KIFVG L V +F QFG + + +L+ +K GFGFV ++
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMF-----DKTTNRHRGFGFVTFESED--- 52
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
K E E + +++ K
Sbjct: 53 IVEKVCEIHFHEINNKMVECKK 74
|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Length = 97 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 8e-09
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 154 IFVGNLPNWIK----KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
I++ NL IK K + F +FG I ++++ + K G FVI+ ++ +
Sbjct: 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL----KMRGQAFVIFKEVSSATN 66
Query: 210 AMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
A++ G F+ + + ++ K +++ A+
Sbjct: 67 ALR--SMQGFPFYDKPMRIQYA-----KTDSDIIAK 95
|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 8e-09
Identities = 11/96 (11%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG 195
+S + + + + +++ NLP + + + + FG + + +++ + + G
Sbjct: 10 ASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSR--G 67
Query: 196 FGFVIYDGPAAEKSAMKAV-EFDGVEFHGRVLTVKL 230
GF + + F+G
Sbjct: 68 VGFARMESTEK---CEAVIGHFNGKFIKTPPGVSAP 100
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 8e-09
Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 16/233 (6%)
Query: 154 IFVGNLPNWIK----KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
I++ NL IK K + F QFG I ++++ + K G FVI+ ++ +
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL----KMRGQAFVIFKEVSSATN 67
Query: 210 AMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEFRSTWHKEREWHRRE 269
A++ G F+ + + ++ K +++ A+ + + K +
Sbjct: 68 ALR--SMQGFPFYDKPMRIQYA-----KTDSDIIAKMKGTFVERDRKREKRKPKSQETPA 120
Query: 270 FRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYY-ARRGDMHRARQTFENMRARGIE 328
+KAV+ P + ++++ + M A G
Sbjct: 121 TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI 180
Query: 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381
P + + + + + + ++ F +
Sbjct: 181 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPG 233
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-06
Identities = 27/168 (16%), Positives = 44/168 (26%), Gaps = 6/168 (3%)
Query: 46 PPEPHNLHRPPKSSRPTRSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPP 105
+ S+ T + P + P P
Sbjct: 102 VERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161
Query: 106 PPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKK 165
P PPP + + +Q +E +F+ NLP +
Sbjct: 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNE 221
Query: 166 HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
++ F QF K V L+ G + FV +D +A A
Sbjct: 222 LMLSMLFNQFPGFKEVRLVPGRH------DIAFVEFDNEVQAGAARDA 263
|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-09
Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIY 201
S + +G + + LP K +++FF + N + + + ++ G FV +
Sbjct: 6 SGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP-VDFQGRSTGEAFVQF 64
Query: 202 DGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
A+++ A KA++ R + + ++
Sbjct: 65 ---ASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTSG 100
|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Length = 75 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 9e-09
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG L + + E+F FG ++++ L K GF F+ + K
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT-NKRRGFCFITFKEEE---PVKK 56
Query: 213 AVEFDGVEFHGRVLTVK 229
+E +K
Sbjct: 57 IMEKKYHNVGLSKCEIK 73
|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 1e-08
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIK----GYNNFEKNVGFGFVIYDGPAAEK 208
+FVG+L + + F+ F + ++ G + G+GFV + +
Sbjct: 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-----SSRGYGFVSFTSQDDAQ 57
Query: 209 SAMKAVEFDGVEFHGRVLTV 228
+AM G + +GR L +
Sbjct: 58 NAMD--SMQGQDLNGRPLRI 75
|
| >2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-08
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--G 195
S +S + Q ++V NL + I + + F FG I + ++ E G
Sbjct: 2 SSGSSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-----EGGRSKG 56
Query: 196 FGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
FGFV + P A+ E +G + L V L
Sbjct: 57 FGFVCFSSPEEATKAVT--EMNGRIVATKPLYVAL 89
|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
I + LP + + V+ FG + N++++KG N F+ + A + +
Sbjct: 34 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN-------QAFIEMNTEEAANTMVNY 86
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNK 239
G+ + ++ + + LK
Sbjct: 87 YTSVTPVLRGQPIYIQFSNHKELKTD 112
|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Query: 128 PDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGY 187
+ +SPS S+ + +++ LP + V++FF++ +++ I I Y
Sbjct: 3 SGSSGKSPSGQ-KRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIA-Y 60
Query: 188 NNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWV 247
K G GFV + E A+ R + V + + K ++ + +
Sbjct: 61 GPNGKATGEGFVEF---RNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRL 117
Query: 248 AG 249
Sbjct: 118 QS 119
|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+VGNLP + + F+ I++V L++ + +K GF +V +D + K A+
Sbjct: 17 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDT-DKFKGFCYVEFDEVDSLKEAL- 73
Query: 213 AVEFDGVEFHGRVLTVKLDDGRR 235
+DG R L V + +GR+
Sbjct: 74 --TYDGALLGDRSLRVDIAEGRK 94
|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Length = 88 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
I V NLP V + + + + ++N FV + A
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYV--------DRNKRTAFVTLL---NGEQAQN 55
Query: 213 AVE-FDGVEFHGRVLTVKL 230
A++ F F G+ L V+L
Sbjct: 56 AIQMFHQYSFRGKDLIVQL 74
|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
G IF+ NL I + + F FG I + ++ N + G+GFV ++ A + A
Sbjct: 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG---SKGYGFVHFETQEAAERA 61
Query: 211 MKAVEFDGVEFHGRVLTV 228
++ + +G+ + R + V
Sbjct: 62 IEKM--NGMLLNDRKVFV 77
|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-08
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN 193
S SS ++S + I V N+P + +++FF + I + +K YN
Sbjct: 2 SSGSSGSSSGKPGPTV----IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK-YNEKGMP 56
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
G V ++ +A+ + + R + +
Sbjct: 57 TGEAMVAFESRDEATAAVI--DLNDRPIGSRKVKL 89
|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-08
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
I + LP + + V+ FG + N++++KG N F+ + A + +
Sbjct: 19 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN-------QAFIEMNTEEAANTMVNY 71
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNK 239
G+ + ++ + + LK
Sbjct: 72 YTSVTPVLRGQPIYIQFSNHKELKTD 97
|
| >2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV-- 194
SS ++ + + GK+FVG L + + +F Q+G + + +++K +K
Sbjct: 2 SSGSSGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK-----DKTTNQ 56
Query: 195 --GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
GFGFV + P + GR + K
Sbjct: 57 SRGFGFVKFKDPN---CVGTVLASRPHTLDGRNIDPKP 91
|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-08
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ + LP + + V+ FG + N++++KG N F+ A + +
Sbjct: 18 LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN-------QAFLELATEEAAITMVNY 70
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNK 239
+ + ++ + + LK
Sbjct: 71 YSAVTPHLRNQPIYIQYSNHKELKTS 96
|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-08
Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 128 PDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIK----KHLVMEFFRQFGPIKNVIL 183
S L ++ TE + + N+ + + L+ G I ++++
Sbjct: 8 KFERQHMDSPDLGSTPPHTE--PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV 65
Query: 184 IKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
N G ++++ + ++ ++ F G F G L +
Sbjct: 66 DLSD----DNSGKAYIVFATQESAQAFVE--AFQGYPFQGNPLVI 104
|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 5e-08
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+++VG L + F +FG I+ + +KG F ++ Y+ A ++A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-------SFAYIQYESLDAAQAACA 71
Query: 213 AVEFDGVEFHGRVLTVKLD 231
+ G G +++D
Sbjct: 72 KM--RGFPLGGPDRRLRVD 88
|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-08
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
+ + V +P ++ V +FF + V L+K + +N G G V + + +
Sbjct: 15 DDLYVSVHGMPFSAMENDVRDFFHGLR-VDAVHLLKDHVG--RNNGNGLVKF---LSPQD 68
Query: 210 AMKAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
+A++ + + R + V R+
Sbjct: 69 TFEALKRNRMLMIQRYVEVSPATERQWVAAG 99
|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 6e-08
Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ + L + + + ++E ++FGPI V+++ V ++ +A+
Sbjct: 24 VHIRGLIDGVVEADLVEALQEFGPISYVVVM-------PKKRQALVEFEDVLGACNAVNY 76
Query: 214 VEFDGVEFHGRVLTV 228
+ + G V
Sbjct: 77 AADNQIYIAGHPAFV 91
|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 96 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 8e-08
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
IF+GNL I + L+ + F FG I I + + G+ F+ + A +A
Sbjct: 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 64
Query: 211 MKAVEFDGVEFHGRVLTV 228
++A+ +G R +TV
Sbjct: 65 IEAM--NGQYLCNRPITV 80
|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 8e-08
Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 133 RSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+P +E R + V LP + + R+ G + + +
Sbjct: 2 GAPRGRYGPPSRRSENR----VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------ 51
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
G G V + A++ + D +F + ++ R
Sbjct: 52 --GTGVVEFVRKEDMTYAVR--KLDNTKFRSHEGETAYIRVKVDGPRSPSYGR 100
|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 9e-08
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FVG+L I + F FG I + ++K K+ G+GFV + ++A++
Sbjct: 8 HVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMAT-GKSKGYGFVSFFNKWDAENAIQ 66
Query: 213 AVEFDGVEFHGRVLTV 228
+ G GR +
Sbjct: 67 --QMGGQWLGGRQIRT 80
|
| >2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-08
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 130 AENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN 189
+ + SS + K+F+G L + + E+F QFG +K ++++
Sbjct: 4 SHHHHHHSSGLVPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---- 59
Query: 190 FEKNV----GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
+ GFGFV + A K + E + + K+
Sbjct: 60 -DPLTKRSRGFGFVTFMDQA---GVDKVLAQSRHELDSKTIDPKV 100
|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ V L + + ++E +FG I V++ V ++ + K +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMM-------MPFKRQALVEFENIDSAKECVTF 70
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKN 238
V G+ +R+
Sbjct: 71 AADVPVYIAGQQAFFNYSTSKRITR 95
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
+ + V LP + + F G I++ L++ +++G+GFV Y P A
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT-GQSLGYGFVNYIDPK---DA 57
Query: 211 MKAVE-FDGVEFHGRVLTVK 229
KA+ +G+ + + V
Sbjct: 58 EKAINTLNGLRLQTKTIKVS 77
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVI 200
++ + ++ ++V LP + + + + F Q+G I IL+ + G GF+
Sbjct: 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR--GVGFIR 136
Query: 201 YDGPAAEKSAMKAVEFDGVEFHG--RVLTVKL 230
+D + A+K +G + G +TVK
Sbjct: 137 FDKRIEAEEAIKG--LNGQKPSGATEPITVKF 166
|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-07
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 129 DAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYN 188
+ + + + +G + + LP K +++FF + N I + +
Sbjct: 20 HMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLP-VD 78
Query: 189 NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
K G FV + A+++ A KA+ R + V
Sbjct: 79 PEGKITGEAFVQF---ASQELAEKALGKHKERIGHRYIEVFK 117
|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S +E ++V NL + ++ + F P +K +
Sbjct: 2 SSGSSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE-------RVKKIRDYA 54
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
FV + AMK +G G + V L
Sbjct: 55 FVHFSNREDAVEAMK--ALNGKVLDGSPIEVTL 85
|
| >1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 123 GNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVI 182
G+ E + L + E E Q K+F+G L + + ++ Q+G + + +
Sbjct: 1 GSSGSSGMEKTLETVPLERKKREKE--QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV 58
Query: 183 LIKGYNNFEKNV----GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
+++ + GFGFV + A +AM A GRV+ K
Sbjct: 59 VMR-----DPASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPK 101
|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-07
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV-GFGFVIYDGPAAEKSAM 211
K+FVG LP I + + FR+FGP+ K + G+ F+++ ++ ++ +
Sbjct: 10 KVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALI 69
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNK-AEVR 243
A + + + V +K+K ++R
Sbjct: 70 DACLEEDGKLYLCV------SSPTIKDKPVQIR 96
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 37/242 (15%), Positives = 72/242 (29%), Gaps = 7/242 (2%)
Query: 84 SPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQ 143
+ P ++ +R PPP E+++ + + + +
Sbjct: 35 NQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWDPHND 94
Query: 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG 203
+ +FV + + + F +GPIK + ++ + K G+ F+ Y+
Sbjct: 95 PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS-GKPRGYAFIEYEH 153
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRARWVAGNNGEEFRSTWHKER 263
SA K DG + GR + V ++ GR +K G R
Sbjct: 154 ERDMHSAYK--HADGKKIDGRRVLVDVERGRTVKGW----RPRRLGGGLGGTRRGGADVN 207
Query: 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMR 323
H + + + + R R R+R R
Sbjct: 208 IRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSR 267
Query: 324 AR 325
+R
Sbjct: 268 SR 269
|
| >3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Length = 87 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-07
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPA 205
GK+FVG L K + ++F +FG + + + + N GFGF+++ A
Sbjct: 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM-----DPNTGRSRGFGFILFKDAA 64
Query: 206 AEKSAMKAVEFDGVEFHGRVLTVK 229
+ + + E GRV+ K
Sbjct: 65 SVEKVLDQKEH---RLDGRVIDPK 85
|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-07
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 24/100 (24%)
Query: 138 SLATSQEETEFRQEGKIFVGNLP-----NWIKKHLVMEFFRQFGPIKNVILIK----GYN 188
S +S + +FV L +K+ F ++ G
Sbjct: 2 SSGSSGPNARSQPSKTLFVKGLSEDTTEETLKES--------FDGSVRARIVTDRETG-- 51
Query: 189 NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
+ GFGFV ++ K+A +A + E G +T+
Sbjct: 52 ---SSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTL 86
|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Length = 77 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-07
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV----GFGFVIYDGPAAEK 208
K+F+G L + + E+F QFG +K ++++ + GFGFV + A
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR-----DPLTKRSRGFGFVTFMDQAGVD 56
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
+ E + + K+
Sbjct: 57 KVLAQ---SRHELDSKTIDPKV 75
|
| >2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV- 194
SS + + + + + V LP + + E+F FG + V + K +
Sbjct: 2 SSGSSGVKRAVQ--KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK-----DLKTG 54
Query: 195 ---GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
GFGFV + + M GR KL
Sbjct: 55 HSKGFGFVRFTEYETQVKVMSQRH----MIDGRWCDCKL 89
|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-07
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFG 197
S +S E R+ ++V + L+ F FG I ++ + +
Sbjct: 2 SSGSSGERRAPRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDL-------SMDPPRNCA 52
Query: 198 FVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNK 239
FV Y+ + A+ + +G + L V + R+
Sbjct: 53 FVTYEKMESADQAVAEL--NGTQVESVQLKVNI--ARKQPML 90
|
| >3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Length = 100 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-07
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
G + + + K + F + G + N+ K GF FV K +
Sbjct: 13 GAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT-GKTKGFLFVECGSMNDAKKII 71
Query: 212 KAVEFDGVEFHGR-VLTV-KLDDGRRLKN 238
K+ F G + L + + D R +
Sbjct: 72 KS--FHGKRLDLKHRLFLYTMKDVERYNS 98
|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 8e-07
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 122 QGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV 181
+G+ + S+ + + + LP ++ + FF P++ V
Sbjct: 17 RGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVR-V 75
Query: 182 ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
+ G + + G V + A + A+ A+ D R + + L+ N A
Sbjct: 76 HIEIGPDG--RVTGEADVEF---ATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAY 130
Query: 242 VRARW 246
Sbjct: 131 SSQVM 135
|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-07
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN 193
S SS ++ Q T + + LP ++ + FF P+ V + G + +
Sbjct: 2 SSGSSGSSFQSTTGH----CVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDG--RV 54
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
G V + A + A+ A+ D R + + L
Sbjct: 55 TGEADVEF---ATHEDAVAAMAKDKANMQHRYVELFL 88
|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Length = 193 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 9e-07
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+++ P + E+ G + N+ + + + K G FV++D + +SA K
Sbjct: 112 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFK--GSIFVVFD---SIESAKKF 166
Query: 214 VEFDGVEFHGRVLTVK 229
VE G ++ L +
Sbjct: 167 VETPGQKYKETDLLIL 182
|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
I NLP + E F +FG + V+L + V + P + A +
Sbjct: 13 ILAKNLPAGTLAAEIQETFSRFGSLGRVLL-------PEGGITAIVEFLEPLEARKAFRH 65
Query: 214 VEFDGVEFHGRVLTV 228
+ +FH L +
Sbjct: 66 L--AYSKFHHVPLYL 78
|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 134 SPSSSLATSQEETEF---RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN----VILIKG 186
S SS TS E +F + + + LP V+ FF Q PI ++ +
Sbjct: 3 SGSSGGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 62
Query: 187 YNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL---DDGRRLKNKAEVR 243
+ + G FV++ A E+ A A+ R + + + +++ N+
Sbjct: 63 PDG--RPTGDAFVLF---ACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSA 117
Query: 244 ARWVAG 249
+ +G
Sbjct: 118 SGPSSG 123
|
| >2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 143 QEETEFRQEGKIFVGNLP------NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
+ + + I V N+P K+++ + F +FG I N + K G+
Sbjct: 7 RPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDG---KTKGY 63
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGR-VLTV-KLDD 232
F+ Y PA A+K DG + + V D
Sbjct: 64 IFLEYASPAHAVDAVKN--ADGYKLDKQHTFRVNLFTD 99
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 2e-06
Identities = 27/139 (19%), Positives = 40/139 (28%), Gaps = 3/139 (2%)
Query: 13 PHTPATLLTHKPHHPTTTSLSFSLKQPP--PPSPTPPEPHNLHRPPKSSRPTRSKIPKNP 70
P P S + P P P + P+ R +R K K
Sbjct: 60 PRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVE 119
Query: 71 FKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDA 130
++ + S + + K PPPPP PP E+ + + + A
Sbjct: 120 YREMDESLANLSEDEYYSE-EERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAA 178
Query: 131 ENRSPSSSLATSQEETEFR 149
TSQE F
Sbjct: 179 FQSRLPHDRMTSQEAACFP 197
|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
I + N+ +M + + N+ LIK ++N GF FV
Sbjct: 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQT-QQNRGFAFVQLSSAMDASQL 69
Query: 211 MKAV--EFDGVEFHGRVLTV 228
++ + ++ G+ + V
Sbjct: 70 LQILQSLHPPLKIDGKTIGV 89
|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Length = 143 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPI-----KNVILIKGYNNFEKNVGFGFVIYDGPAAE 207
+I+V NL +++ + F ++ + + I+ + G F+ A
Sbjct: 47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG-RMKGQAFIGLPNEKAA 105
Query: 208 KSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
A+K E +G G+ + V+ ++ +
Sbjct: 106 AKALK--EANGYVLFGKPMVVQFA-----RSARPKQDP 136
|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ + P + + VMEF P + +++ + G+ FV + + E+ +
Sbjct: 12 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHG--NKTGYIFVDF---SNEEEVKQ 65
Query: 213 AVEFDGVEFHGRVLTV 228
A++ + GR + V
Sbjct: 66 ALKCNREYMGGRYIEV 81
|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+++G+L ++ ++ + F G + +V +I+ G+ FV + A + +
Sbjct: 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT-GIPAGYCFVEFADLATAEKCL 69
Query: 212 KAVEFDGVEFHGRVLTVKL 230
+G G +
Sbjct: 70 HK--INGKPLPGATPAKRF 86
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 45.8 bits (107), Expect = 2e-05
Identities = 14/134 (10%), Positives = 28/134 (20%), Gaps = 2/134 (1%)
Query: 13 PHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFK 72
H P P S S + PP P PP+ + + + P
Sbjct: 13 NHEPEPAGGATPGATLPKSPSQL--RKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEI 70
Query: 73 NLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAEN 132
++ + S + + E + + +
Sbjct: 71 SVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGS 130
Query: 133 RSPSSSLATSQEET 146
+ L
Sbjct: 131 GAGRLDLPPGFMFK 144
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 44.7 bits (104), Expect = 3e-05
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 2/109 (1%)
Query: 40 PPPSPTPPEPHNLHRPPKSSRPTRSK-IPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSS 98
P+ TP N H P + T +PK+P + P + ++ S
Sbjct: 2 GSPAATPEIRVN-HEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILS 60
Query: 99 KLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETE 147
P Q E P A + P + A+ +
Sbjct: 61 LFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSS 109
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 44.7 bits (104), Expect = 4e-05
Identities = 16/141 (11%), Positives = 34/141 (24%)
Query: 15 TPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPFKNL 74
+PA + +H + + P SP+ PP P++ +
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF 62
Query: 75 LNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRS 134
++ + + ++ P P A S +
Sbjct: 63 EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATV 122
Query: 135 PSSSLATSQEETEFRQEGKIF 155
+ S G +F
Sbjct: 123 NGTVEGGSGAGRLDLPPGFMF 143
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 42.8 bits (99), Expect = 2e-04
Identities = 17/129 (13%), Positives = 28/129 (21%), Gaps = 7/129 (5%)
Query: 6 SLSAPHFPHTPATLLTH---KPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPT 62
+ H P PA T P P+ + PP +P+
Sbjct: 9 EIRVNHEP-EPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFV 67
Query: 63 RSKIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQ 122
P + S P + + + S P E +
Sbjct: 68 PEISVTTPSQPAEASEVAGGTQPAAGAQEPG---ETAASEAASSSLPAVVVETFPATVNG 124
Query: 123 GNDEIPDAE 131
+ A
Sbjct: 125 TVEGGSGAG 133
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 16/124 (12%)
Query: 119 PQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNL-PNWIKKHLVMEFFRQFGP 177
S G R LA + + V NL P + + F +G
Sbjct: 9 HHSSGLVPRGSHMGRIAIPGLAGAGNSV-------LLVSNLNPERVTPQSLFILFGVYGD 61
Query: 178 IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLK 237
++ V ++ V + AM +G + HG+ + + L + ++
Sbjct: 62 VQRVKILF------NKKENALVQMADGNQAQLAMSH--LNGHKLHGKPIRITLSKHQNVQ 113
Query: 238 NKAE 241
E
Sbjct: 114 LPRE 117
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 154 IFVGNL-PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V NL P + + F +G ++ V ++ V + AM
Sbjct: 6 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILF------NKKENALVQMADGNQAQLAMS 59
Query: 213 AVEFDGVEFHGRVLTVKL 230
+G + HG+ + + L
Sbjct: 60 --HLNGHKLHGKPIRITL 75
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 7e-04
Identities = 18/146 (12%), Positives = 48/146 (32%), Gaps = 26/146 (17%)
Query: 93 KLRLS-SKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQE 151
+R++ SK P ++ + +++ + S
Sbjct: 70 PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA-------- 121
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+ + N+P + + + F G + +KG+ F+K+ + + + A+
Sbjct: 122 -TLHLSNIPPSVSEEDLKVLFSSNGGV-----VKGFKFFQKDRKMALIQMG---SVEEAV 172
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLK 237
+A+ + H L + L+
Sbjct: 173 QALI----DLHNH----DLGENHHLR 190
|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-05
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 8/98 (8%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQF---GPIKNVILIKGYNNFEK 192
SS + E + + + LP V F + V I +
Sbjct: 2 SSGSSGMMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREG--R 59
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
G FV +E A++ D R + V
Sbjct: 60 QSGEAFVEL---ESEDDVKLALKKDRESMGHRYIEVFK 94
|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 112 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-05
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 131 ENRSPSSSLATSQEETEFRQEGK-IFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYN 188
+ Q+ + ++ G+ I + NLP+ V++ +G IKN IL++ +
Sbjct: 4 GSSGKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKS 63
Query: 189 NFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228
F+ + + + + F GR + V
Sbjct: 64 -------QAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96
|
| >2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 154 IFVGNLPNWIK------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAE 207
I V N+P K+++ + F +FG I N + K G+ F+ Y PA
Sbjct: 4 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDG---KTKGYIFLEYASPAHA 60
Query: 208 KSAMKAVEFDGVEFHGR 224
A+K DG + +
Sbjct: 61 VDAVKN--ADGYKLDKQ 75
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 6e-05
Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 13/141 (9%)
Query: 95 RLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKI 154
+++ +S P P + + E + +P + +
Sbjct: 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRI----QHPSNVL 126
Query: 155 FVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214
N P + + E + G + +K ++ + G + +D + A++ +
Sbjct: 127 HFFNAPLEVTEENFFEICDELGVKRPTS-VKVFSGKSERSSSGLLEWDSKS---DALETL 182
Query: 215 -EFDGVEFHGRV----LTVKL 230
+ + T+KL
Sbjct: 183 GFLNHYQMKNPNGPYPYTLKL 203
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 42/300 (14%), Positives = 93/300 (31%), Gaps = 64/300 (21%)
Query: 304 NYYARRGDMHRARQTFENMRARGIEPTLH-------VYTNLIHAYAVGRDMEEALSCVRK 356
Y + + A + F+ +A + + + +Y + ++ R+
Sbjct: 111 MYELDQREYLSAIKFFK--KAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Query: 357 -----MKEEGIEMSLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLN-----AIIYG 405
+ E + L+ +S+ F + E A F++A
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228
Query: 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465
NI + E A I + ++ + VFE E
Sbjct: 229 NIGLCKNSQSQYEDA---------------IPYF-------------KRAIAVFE---ES 257
Query: 466 GFSPSII-SYGCLINLYTKIGKVSKALEVSK----VMKSSGIKHNMKTYSMLINGFLKLK 520
PS+ +Y + ++ K+GK+ KA E + +G + + L + +L
Sbjct: 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317
Query: 521 DWANVFAVFEDVMRDGLKPDVV-LYNNIIRAFCGMGNMDRAIH-------IVKEMQKERH 572
D + F+ + L D+ ++ + + N +A + + +Q
Sbjct: 318 DEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377
|
| >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ G L N + ++ ++ + G + +++ + F Y K A
Sbjct: 30 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-------PYSFARYRTTEESKRAYVT 82
Query: 214 V 214
+
Sbjct: 83 L 83
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 18/234 (7%)
Query: 340 AYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL 399
A+ +G ++ ++ +++K E + + + +E K A
Sbjct: 9 AFYIGSY-QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVV---LDEIKPSSAPE 64
Query: 400 NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459
+ Y +R L R+M M Y N + L
Sbjct: 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL 124
Query: 460 ERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS----SGIKHNMKTYSMLING 515
+ S+ + + K+ ++ A + K M+ + + + L G
Sbjct: 125 HQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 516 FLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQK 569
KL+D + +F++ M D P ++L N G + A +++E
Sbjct: 179 GEKLQD---AYYIFQE-MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 142 SQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE-KNVGFGFVI 200
S+ E E I LP V+ FF I N + K G +
Sbjct: 2 SKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIE 61
Query: 201 YDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
+E+ KA+E + R + V
Sbjct: 62 M---ESEQDVQKALEKHRMYMGQRYVEVYE 88
|
| >2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546 | Back alignment and structure |
|---|
Score = 42.8 bits (99), Expect = 4e-04
Identities = 18/140 (12%), Positives = 36/140 (25%)
Query: 12 FPHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRSKIPKNPF 71
F P + S + P+ RPP + +++ P
Sbjct: 10 FARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69
Query: 72 KNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQLQEPQSQGNDEIPDAE 131
L + +P + + A K+ P PP Q+ +
Sbjct: 70 LRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129
Query: 132 NRSPSSSLATSQEETEFRQE 151
R + + + + E
Sbjct: 130 ARELGARVRALKASAQDAGE 149
|
| >2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 5e-04
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQF-----GPIKNVILIKGYNNFEKNVGFGFV 199
+ + V LP + L+ +F GP+ + ++ G +
Sbjct: 2 SSGSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSW---------QRLGCGGVL 52
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
+ PA A + + E HG L+++
Sbjct: 53 TFREPA---DAERVLAQADHELHGAQLSLR 79
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 7e-04
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 6 SLSAPHF-PHTPATLLTHKPHHPTTTSLSFSLKQPPPPSPTPPEPHNLHRPPKSSRPTRS 64
S++AP P + + H ++LS + PP P H + PT
Sbjct: 32 SMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLG 91
Query: 65 KIPKNPFKNLLNSATTHVPSPPSHSLSAKLRLSSKLSPPPPPPPPPPPAEQ 115
+P ++ P S + L L+ L P P +
Sbjct: 92 FSTGSP-----QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTK 137
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 798 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 4fxv_A | 99 | ELAV-like protein 1; RNA recognition motif, putati | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3s8s_A | 110 | Histone-lysine N-methyltransferase SETD1A; chromat | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 2lkz_A | 95 | RNA-binding protein 5; RRM; NMR {Homo sapiens} | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 2lxi_A | 91 | RNA-binding protein 10; NMR {Homo sapiens} | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3n9u_C | 156 | Cleavage and polyadenylation specificity factor S; | 99.77 | |
| 2khc_A | 118 | Testis-specific RNP-type RNA binding protein; RRM, | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3p5t_L | 90 | Cleavage and polyadenylation specificity factor S; | 99.76 | |
| 1sjq_A | 105 | Polypyrimidine tract-binding protein 1; babbab mot | 99.76 | |
| 3ns6_A | 100 | Eukaryotic translation initiation factor 3 subuni; | 99.75 | |
| 3md1_A | 83 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.75 | |
| 2x1f_A | 96 | MRNA 3'-END-processing protein RNA15; transcriptio | 99.75 | |
| 2wbr_A | 89 | GW182, gawky, LD47780P; DNA-binding protein, RRM, | 99.75 | |
| 3bs9_A | 87 | Nucleolysin TIA-1 isoform P40; RNA recognition mot | 99.75 | |
| 2e5h_A | 94 | Zinc finger CCHC-type and RNA-binding motif- conta | 99.74 | |
| 3r27_A | 100 | HnRNP L, heterogeneous nuclear ribonucleoprotein L | 99.74 | |
| 2cqc_A | 95 | Arginine/serine-rich splicing factor 10; RNA recog | 99.74 | |
| 3mdf_A | 85 | Peptidyl-prolyl CIS-trans isomerase E; RRM domain, | 99.74 | |
| 2do4_A | 100 | Squamous cell carcinoma antigen recognized by T- c | 99.74 | |
| 2j76_E | 100 | EIF-4B, EIF4B, eukaryotic translation initiation f | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1u6f_A | 139 | Tcubp1, RNA-binding protein UBP1; trypanosome, mRN | 99.74 | |
| 2m2b_A | 131 | RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio | 99.73 | |
| 2cq0_A | 103 | Eukaryotic translation initiation factor 3 subunit | 99.73 | |
| 2cqb_A | 102 | Peptidyl-prolyl CIS-trans isomerase E; RNA recogni | 99.73 | |
| 2cpz_A | 115 | CUG triplet repeat RNA-binding protein 1; RRM doma | 99.73 | |
| 2rs2_A | 109 | Musashi-1, RNA-binding protein musashi homolog 1; | 99.73 | |
| 4f25_A | 115 | Polyadenylate-binding protein 1; RRM fold, transla | 99.73 | |
| 2dnz_A | 95 | Probable RNA-binding protein 23; RNA recognition m | 99.73 | |
| 2cq1_A | 101 | PTB-like protein L; RRM domain, structural genomic | 99.73 | |
| 2dnm_A | 103 | SRP46 splicing factor; RRM domain, RBD, structural | 99.73 | |
| 1whw_A | 99 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.73 | |
| 2cq4_A | 114 | RNA binding motif protein 23; RRM domain, structur | 99.73 | |
| 1x5u_A | 105 | Splicing factor 3B subunit 4 (spliceosome associat | 99.73 | |
| 2la6_A | 99 | RNA-binding protein FUS; structural genomics, nort | 99.73 | |
| 2dgo_A | 115 | Cytotoxic granule-associated RNA binding protein 1 | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 2dgs_A | 99 | DAZ-associated protein 1; RRM domain, structural g | 99.72 | |
| 2kxn_B | 129 | Transformer-2 protein homolog beta; SR protein, RR | 99.72 | |
| 1x4h_A | 111 | RNA-binding protein 28; structural genomics, RRM d | 99.72 | |
| 2jrs_A | 108 | RNA-binding protein 39; RNA binding motif of RBM39 | 99.72 | |
| 3ucg_A | 89 | Polyadenylate-binding protein 2; ferredoxin-like, | 99.72 | |
| 1s79_A | 103 | Lupus LA protein; RRM, alpha/beta, RNA binding pro | 99.72 | |
| 1x5t_A | 96 | Splicing factor 3B subunit 4; structure genomics, | 99.72 | |
| 1p27_B | 106 | RNA-binding protein 8A; nuclear protein, mRNA spli | 99.72 | |
| 1oo0_B | 110 | CG8781-PA, drosophila Y14; RNA recognition motif, | 99.72 | |
| 2mss_A | 75 | Protein (musashi1); RNA-binding domain, RNA bindin | 99.71 | |
| 2ywk_A | 95 | Putative RNA-binding protein 11; RRM-domain, struc | 99.71 | |
| 1x4d_A | 102 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.71 | |
| 2fy1_A | 116 | RNA-binding motif protein, Y chromosome, family 1 | 99.71 | |
| 1x4e_A | 85 | RNA binding motif, single-stranded interacting pro | 99.71 | |
| 1x5s_A | 102 | Cold-inducible RNA-binding protein; structure geno | 99.71 | |
| 2err_A | 109 | Ataxin-2-binding protein 1; protein-RNA complex, R | 99.71 | |
| 2cpf_A | 98 | RNA binding motif protein 19; RNA recognition moti | 99.71 | |
| 3s7r_A | 87 | Heterogeneous nuclear ribonucleoprotein A/B; ferre | 99.71 | |
| 2ad9_A | 119 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.71 | |
| 1wi8_A | 104 | EIF-4B, eukaryotic translation initiation factor 4 | 99.71 | |
| 2div_A | 99 | TRNA selenocysteine associated protein; structural | 99.71 | |
| 2dgp_A | 106 | Bruno-like 4, RNA binding protein; RRM domain, str | 99.71 | |
| 1uaw_A | 77 | Mouse-musashi-1; RNP-type structure, RNA binding p | 99.71 | |
| 2dng_A | 103 | Eukaryotic translation initiation factor 4H; RRM d | 99.71 | |
| 2j8a_A | 136 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.71 | |
| 2cpe_A | 113 | RNA-binding protein EWS; RNA recognition motif, RR | 99.7 | |
| 2dnh_A | 105 | Bruno-like 5, RNA binding protein; RRM domain, RBD | 99.7 | |
| 1p1t_A | 104 | Cleavage stimulation factor, 64 kDa subunit; RNA r | 99.7 | |
| 2dgx_A | 96 | KIAA0430 protein; RRM domain, structural genomics, | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 2cqd_A | 116 | RNA-binding region containing protein 1; RNA recog | 99.7 | |
| 2jwn_A | 124 | Embryonic polyadenylate-binding protein 2-B; epabp | 99.7 | |
| 2d9p_A | 103 | Polyadenylate-binding protein 3; RRM domain, struc | 99.7 | |
| 2cqp_A | 98 | RNA-binding protein 12; RNA recognition motif, RRM | 99.7 | |
| 1wex_A | 104 | Hypothetical protein (riken cDNA 2810036L13); stru | 99.7 | |
| 4a8x_A | 88 | RNA-binding protein with serine-rich domain 1; tra | 99.7 | |
| 2cpi_A | 111 | CCR4-NOT transcription complex subunit 4; RNA reco | 99.7 | |
| 2ki2_A | 90 | SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 1x4b_A | 116 | Heterogeneous nuclear ribonucleoproteins A2/B1; st | 99.69 | |
| 2ek1_A | 95 | RNA-binding protein 12; RNA recognition motif, dim | 99.69 | |
| 2kt5_A | 124 | RNA and export factor-binding protein 2; chaperone | 99.69 | |
| 2dhg_A | 104 | TRNA selenocysteine associated protein (SECP43); R | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 1x4a_A | 109 | Splicing factor, arginine/serine-rich 1 (splicing | 99.69 | |
| 1x4f_A | 112 | Matrin 3; structural genomics, RRM domain, NPPSFA, | 99.69 | |
| 3ulh_A | 107 | THO complex subunit 4; nuclear protein, RNA bindin | 99.69 | |
| 2dh8_A | 105 | DAZ-associated protein 1; RRM domain, structural g | 99.69 | |
| 2cqg_A | 103 | TDP-43, TAR DNA-binding protein-43; RNA recognitio | 99.69 | |
| 2dgv_A | 92 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.68 | |
| 2cqi_A | 103 | Nucleolysin TIAR; RNA recognition motif, RRM, RNA | 99.68 | |
| 2cq3_A | 103 | RNA-binding protein 9; RRM domain, structural geno | 99.68 | |
| 2do0_A | 114 | HnRNP M, heterogeneous nuclear ribonucleoprotein M | 99.68 | |
| 2nlw_A | 105 | Eukaryotic translation initiation factor 3 subunit | 99.68 | |
| 2a3j_A | 127 | U1 small nuclear ribonucleoprotein A; computationa | 99.68 | |
| 2lea_A | 135 | Serine/arginine-rich splicing factor 2; SR protein | 99.68 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 99.68 | |
| 2la4_A | 101 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.68 | |
| 3ex7_B | 126 | RNA-binding protein 8A; protein-RNA complex, mRNA | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 2dis_A | 109 | Unnamed protein product; structural genomics, RRM | 99.67 | |
| 2dnn_A | 109 | RNA-binding protein 12; RRM domain, RBD, structura | 99.67 | |
| 2cph_A | 107 | RNA binding motif protein 19; RNA recognition moti | 99.67 | |
| 2krb_A | 81 | Eukaryotic translation initiation factor 3 subunit | 99.67 | |
| 2cpj_A | 99 | Non-POU domain-containing octamer-binding protein; | 99.67 | |
| 1iqt_A | 75 | AUF1, heterogeneous nuclear ribonucleoprotein D0; | 99.67 | |
| 2db1_A | 118 | Heterogeneous nuclear ribonucleoprotein F; RRM dom | 99.67 | |
| 2jvr_A | 111 | Nucleolar protein 3; RNA recognition motif, nucleu | 99.67 | |
| 1h2v_Z | 156 | 20 kDa nuclear CAP binding protein; CAP-binding-co | 99.67 | |
| 2hgl_A | 136 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.66 | |
| 1wel_A | 124 | RNA-binding protein 12; structural genomics, NPPSF | 99.66 | |
| 1wez_A | 102 | HnRNP H', FTP-3, heterogeneous nuclear ribonucleop | 99.66 | |
| 2cpy_A | 114 | RNA-binding protein 12; RRM domain, structural gen | 99.66 | |
| 1fj7_A | 101 | Nucleolin RBD1, protein C23; RNP, RRM, RNA binding | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2dgw_A | 91 | Probable RNA-binding protein 19; RRM domain, struc | 99.66 | |
| 1x5o_A | 114 | RNA binding motif, single-stranded interacting pro | 99.65 | |
| 2kn4_A | 158 | Immunoglobulin G-binding protein G, splicing FACT | 99.65 | |
| 3q2s_C | 229 | Cleavage and polyadenylation specificity factor S; | 99.65 | |
| 2lmi_A | 107 | GRSF-1, G-rich sequence factor 1; G-rich RNA seque | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 1why_A | 97 | Hypothetical protein riken cDNA 1810017N16; RNA re | 99.65 | |
| 2fc9_A | 101 | NCL protein; structure genomics, RRM_1 domain, str | 99.65 | |
| 1rk8_A | 165 | CG8781-PA, CG8781-PA protein; mRNA processing, RRM | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 2jvo_A | 108 | Nucleolar protein 3; nucleus, phosphorylation, rib | 99.64 | |
| 1whx_A | 111 | Hypothetical protein riken cDNA 1200009A02; RNA re | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 2e5j_A | 97 | Methenyltetrahydrofolate synthetase domain contain | 99.64 | |
| 1nu4_A | 97 | U1A RNA binding domain; RNA recognition motif, U1 | 99.64 | |
| 2lcw_A | 116 | RNA-binding protein FUS; RRM, nucleic acid binding | 99.44 | |
| 2fc8_A | 102 | NCL protein; structure genomics, RRM_1 domain, str | 99.64 | |
| 2xnq_A | 97 | Nuclear polyadenylated RNA-binding protein 3; tran | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 3lqv_A | 115 | PRE-mRNA branch site protein P14; cysless mutant, | 99.63 | |
| 1wg5_A | 104 | Heterogeneous nuclear ribonucleoprotein H; structu | 99.63 | |
| 1x4g_A | 109 | Nucleolysin TIAR; structural genomics, RRM domain, | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 2cpx_A | 115 | Hypothetical protein FLJ11016; RRM domain, structu | 99.62 | |
| 2cq2_A | 114 | Hypothetical protein LOC91801; RRM domain, structu | 99.62 | |
| 1fjc_A | 96 | Nucleolin RBD2, protein C23; RNP, RRM, RNA binding | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 1x4c_A | 108 | Splicing factor, arginine/serine-rich 1; structura | 99.62 | |
| 2hgm_A | 126 | HNRPF protein, heterogeneous nuclear ribonucleopro | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 2hgn_A | 139 | Heterogeneous nuclear ribonucleoprotein F; RNA rec | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 2dha_A | 123 | FLJ20171 protein; RRM domain, structural genomics, | 99.61 | |
| 2dnq_A | 90 | RNA-binding protein 4B; RRM domain,RBD, structural | 99.61 | |
| 3zzy_A | 130 | Polypyrimidine tract-binding protein 1; protein bi | 99.61 | |
| 2xs2_A | 102 | Deleted in azoospermia-like; RNA binding protein-R | 99.6 | |
| 2dgt_A | 92 | RNA-binding protein 30; RRM domain, structural gen | 99.6 | |
| 2cpd_A | 99 | Apobec-1 stimulating protein; RNA recognition moti | 99.6 | |
| 2ytc_A | 85 | PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s | 99.6 | |
| 2hvz_A | 101 | Splicing factor, arginine/serine-rich 7; RRM, RNA | 99.6 | |
| 1x5p_A | 97 | Negative elongation factor E; structure genomics, | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 2kvi_A | 96 | Nuclear polyadenylated RNA-binding protein 3; RNA- | 99.6 | |
| 2diu_A | 96 | KIAA0430 protein; structural genomics, RRM domain, | 99.6 | |
| 2dgu_A | 103 | Heterogeneous nuclear ribonucleoprotein Q; RRM dom | 99.59 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.59 | |
| 2f3j_A | 177 | RNA and export factor binding protein 2; RRM domai | 99.59 | |
| 1wg1_A | 88 | KIAA1579 protein, homolog EXC-7; RBD, structural g | 99.59 | |
| 1sjr_A | 164 | Polypyrimidine tract-binding protein 1; extended b | 99.59 | |
| 2e5i_A | 124 | Heterogeneous nuclear ribonucleoprotein L-like; RR | 99.59 | |
| 2dnp_A | 90 | RNA-binding protein 14; RRM domain, RBD, structura | 99.59 | |
| 3d2w_A | 89 | TAR DNA-binding protein 43; DP-43 proteinopathy, T | 99.59 | |
| 2pe8_A | 105 | Splicing factor 45; RRM, protein binding; 2.00A {H | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2i2y_A | 150 | Fusion protein consists of immunoglobin G- binding | 99.58 | |
| 2e44_A | 96 | Insulin-like growth factor 2 mRNA binding protein | 99.58 | |
| 3egn_A | 143 | RNA-binding protein 40; RNA recognition motif (RRM | 99.58 | |
| 2e5g_A | 94 | U6 snRNA-specific terminal uridylyltransferase 1; | 99.57 | |
| 2cqh_A | 93 | IGF-II mRNA-binding protein 2 isoform A; RNA recog | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 1wf1_A | 110 | RNA-binding protein RALY; structural genomics, RRM | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2dnl_A | 114 | Cytoplasmic polyadenylation element binding protei | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 3pgw_S | 437 | U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM | 99.55 | |
| 2hzc_A | 87 | Splicing factor U2AF 65 kDa subunit; RNA splicing, | 99.55 | |
| 3beg_B | 115 | Splicing factor, arginine/serine-rich 1; kinase, S | 99.54 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.54 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.52 | |
| 1wf0_A | 88 | TDP-43, TAR DNA-binding protein-43; structural gen | 99.52 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.51 | |
| 4f02_A | 213 | Polyadenylate-binding protein 1; mRNA, eukaryotic | 99.51 | |
| 2bz2_A | 121 | Negative elongation factor E; NELF E, RNA recognit | 99.51 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.5 | |
| 2cjk_A | 167 | Nuclear polyadenylated RNA-binding protein 4; HRP1 | 99.49 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.49 | |
| 3u1l_A | 240 | PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; | 99.49 | |
| 2voo_A | 193 | Lupus LA protein; RNA-binding protein, RNA recogni | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.48 | |
| 2qfj_A | 216 | FBP-interacting repressor; protein-DNA complex; HE | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3md3_A | 166 | Nuclear and cytoplasmic polyadenylated RNA-bindin | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 1l3k_A | 196 | Heterogeneous nuclear ribonucleoprotein A1; nuclea | 99.45 | |
| 1b7f_A | 168 | Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 1fxl_A | 167 | Paraneoplastic encephalomyelitis antigen HUD; prot | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 1jmt_A | 104 | Splicing factor U2AF 35 kDa subunit; RRM, RNA spli | 99.43 | |
| 3v4m_A | 105 | Splicing factor U2AF 65 kDa subunit; canonical RNA | 99.42 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.42 | |
| 3nmr_A | 175 | Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl | 99.42 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.42 | |
| 2dit_A | 112 | HIV TAT specific factor 1 variant; structural geno | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3pgw_A | 282 | U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 99.37 | |
| 1fje_B | 175 | Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin | 99.37 | |
| 3ue2_A | 118 | Poly(U)-binding-splicing factor PUF60; RNA recogni | 99.37 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.37 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 99.37 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.36 | |
| 3tyt_A | 205 | Heterogeneous nuclear ribonucleoprotein L; ferredo | 99.35 | |
| 3smz_A | 284 | Protein raver-1, ribonucleoprotein PTB-binding 1; | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 99.33 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 2g4b_A | 172 | Splicing factor U2AF 65 kDa subunit; protein-RNA c | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 2adc_A | 229 | Polypyrimidine tract-binding protein 1; RBD, RRM, | 99.28 | |
| 1qm9_A | 198 | Polypyrimidine tract-binding protein; ribonucleopr | 99.28 | |
| 2d9o_A | 100 | DNAJ (HSP40) homolog, subfamily C, member 17; RRM | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3sde_A | 261 | Paraspeckle component 1; RRM, anti parallel right | 99.26 | |
| 2yh0_A | 198 | Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 2ghp_A | 292 | U4/U6 snRNA-associated splicing factor PRP24; RNA | 99.24 | |
| 3tht_A | 345 | Alkylated DNA repair protein ALKB homolog 8; struc | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 3s6e_A | 114 | RNA-binding protein 39; ferredoxin-like, structura | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.15 | |
| 2dnr_A | 91 | Synaptojanin-1; RRM domain, RBD, structural genomi | 99.14 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.09 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.09 | |
| 1owx_A | 121 | Lupus LA protein, SS-B, LA; RRM, transcription; NM | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.08 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.08 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.03 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 1ufw_A | 95 | Synaptojanin 2; RNP domain, structural genomics, r | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.81 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 98.76 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.74 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.73 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.68 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.65 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.45 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 2l9w_A | 117 | U4/U6 snRNA-associated-splicing factor PRP24; RRM, | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.25 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.16 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.09 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.0 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.95 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.92 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.87 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.78 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.71 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.69 | |
| 1wey_A | 104 | Calcipressin 1; structural genomics, RRM domain, r | 97.67 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.6 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.56 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.53 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.51 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.48 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.15 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.08 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.0 | |
| 2dhx_A | 104 | Poly (ADP-ribose) polymerase family, member 10 var | 96.9 | |
| 1whv_A | 100 | Poly(A)-specific ribonuclease; RNA recognition mot | 96.73 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.69 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.67 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.62 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.54 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.52 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.35 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.29 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.21 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.21 | |
| 3ctr_A | 101 | Poly(A)-specific ribonuclease PARN; protein-RNA-co | 96.17 | |
| 1uw4_A | 91 | UPF3X; nonsense mediated mRNA decay protein, RNA-b | 96.11 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.08 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.92 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.79 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.75 | |
| 1wwh_A | 119 | Nucleoporin 35, nucleoporin; structural genomics, | 95.68 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.65 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.65 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.51 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.51 | |
| 3pq1_A | 464 | Poly(A) RNA polymerase; nucleotidyl transferase, R | 95.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.98 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.76 | |
| 3p3d_A | 132 | Nucleoporin 53; structural genomics, PSI-2, protei | 93.67 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.94 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.86 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.76 | |
| 2kn4_A | 158 | Immunoglobulin G-binding protein G, splicing FACT | 92.67 | |
| 2l08_A | 97 | Regulator of nonsense transcripts 3A; NESG, nonsen | 92.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.17 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.73 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.4 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.18 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.54 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.96 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.27 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.21 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.81 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.19 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.47 | |
| 2i2y_A | 150 | Fusion protein consists of immunoglobin G- binding | 84.34 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.04 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.62 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.3 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.84 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.06 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.03 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 80.81 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=366.69 Aligned_cols=438 Identities=11% Similarity=0.007 Sum_probs=268.5
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
++...|+.++..|.+.|++++|+.+|++|... .|+..+++.++.+|.+.|++++|+.+|+++... ..+..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 45677899999999999999999999999965 678899999999999999999999999998653 56899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003749 374 GGFAKMGNAEAADHWFEEAKER---------------HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDI 438 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 438 (798)
.+|.+.|++++|+++|+++... +...+..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 9999999999999999964322 112357899999999999999999999999999875 334555
Q ss_pred HHHHHHH--------------------------------------HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 003749 439 YHMMMDG--------------------------------------YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480 (798)
Q Consensus 439 ~~~l~~~--------------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 480 (798)
+..+... |.+.|++++|+++|+++.+. .++..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 5555433 33445555555555554432 2345555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRA 560 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 560 (798)
|.+.|++++|+++|+++.+.+ ..+..++..++.+|.+.|++++|..+|+++.+.... +..+|+.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHH
Confidence 555555555555555554433 123444555555555555555555555555443222 444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 561 IHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA 640 (798)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 640 (798)
.++|+++.+.... +..+|..++.+|.+.|++++|+++|+++.+.+.. +..+|+.++.+|.+.|++++|+++|+++.+.
T Consensus 393 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555443221 3444555555555555555555555555443322 4445555555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003749 641 GISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE----GLELD--VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (798)
Q Consensus 641 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (798)
. ..+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|..+++++.+.+ +.
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 2 224445555555555555555555555555443 33344 4455555555555555555555555554433 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
+..+|..++.+|.+.|++++|.++|+++.+
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445555555555555555555555555554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=355.09 Aligned_cols=454 Identities=10% Similarity=0.029 Sum_probs=384.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAA 385 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 385 (798)
+...|....+...+..+.. ++...|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 3445666666666665543 47889999999999999999999999999864 46889999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcC
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE---------------GIDAPIDIYHMMMDGYTIIG 450 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~l~~~~~~~g 450 (798)
+.+|+++... ..+..+++.++.+|.+.|++++|.++|+++... +...+..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999998654 558899999999999999999999999853221 12235789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHH--------------------------------------HHHHHHcCCHHHHHH
Q 003749 451 NEEKCLIVFERLKECGFSPSIISYGCL--------------------------------------INLYTKIGKVSKALE 492 (798)
Q Consensus 451 ~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------------------------i~~~~~~g~~~~A~~ 492 (798)
++++|+++|+++.+.+.. +...+..+ +..|.+.|++++|++
T Consensus 215 ~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999999886532 33333333 556667899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 003749 493 VSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH 572 (798)
Q Consensus 493 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 572 (798)
+|+++.+. ..+..+|+.++.+|.+.|++++|+.+|+++.+.+.. +..+++.++.+|.+.|++++|..+++++.....
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 370 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc
Confidence 99999875 478999999999999999999999999999987655 778899999999999999999999999987653
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 573 RPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652 (798)
Q Consensus 573 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~l 652 (798)
.+..++..++.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..+|..+
T Consensus 371 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 371 -EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp -TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred -ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 37788999999999999999999999999886543 78899999999999999999999999999875 4578899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHH
Q 003749 653 MHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ----KIPRN--TFVYNILIDGW 726 (798)
Q Consensus 653 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~ 726 (798)
+.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999987654 8899999999999999999999999999875 44566 78999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 003749 727 ARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPML 776 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~~ 776 (798)
.+.|++++|+++++++.+.+ ..+..+|..++..|.+.|++++|.+....
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999864 34789999999999999999999988443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-28 Score=256.35 Aligned_cols=380 Identities=12% Similarity=0.042 Sum_probs=173.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
...+.+.|++++|++.++.+.+.. +.+...+..+...+.+.|++++|...++..++.. +.+..+|..++..|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 444555566666666666555542 2233444455555555566666666655555542 23455555555556666666
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (798)
++|++.|+++..... .+..+|..++.++.+.|++++|.+.|+++.+.+ +.+..++..+...|...|++++|++.|+++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666655555422 134445555555555555555555555555442 222333444444444444444444444444
Q ss_pred HHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 463 KECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (798)
Q Consensus 463 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (798)
.+.... +..+|..+..+|...|++++|+..|+++. +.++. +..
T Consensus 162 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------~~~p~-~~~ 204 (388)
T 1w3b_A 162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAV-----------------------------------TLDPN-FLD 204 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------------HHCTT-CHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------hcCCC-cHH
Confidence 443211 23344444444444444444444444444 33222 233
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (798)
Q Consensus 543 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 622 (798)
.|..+...+...|++++|+..|++....... +..++..+..+|.+.|++++|+..|+++.+.... +..+|..+..++.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 3444444444444444444444444333211 2333344444444444444444444444443221 2334444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003749 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA 702 (798)
Q Consensus 623 ~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (798)
+.|++++|+..|+++.+.. +.+..+|..+...+.+.|++++|.++|+++.+... .+..++..++.+|.+.|++++|..
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444444332 23334444444444444444444444444443321 133444444444444444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003749 703 VTKEMSAQKIPRNTFVYNILIDGWAR 728 (798)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (798)
.++++.+.. +.+...|..+...+..
T Consensus 361 ~~~~a~~~~-p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 361 HYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC-CCCHHHHHhHHHHHHH
Confidence 444444432 2333344444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=255.34 Aligned_cols=371 Identities=11% Similarity=0.023 Sum_probs=265.4
Q ss_pred cHHHHHHHHHhh---cCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003749 280 NWQAVVSAFERI---KKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRK 356 (798)
Q Consensus 280 ~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (798)
.+...+..|... ...+...+..+...+.+.|++++|..+++.+.+.. +.+..+|+.+..+|.+.|++++|+..|++
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455666666543 23356677888889999999999999999999874 56788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 003749 357 MKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI 436 (798)
Q Consensus 357 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 436 (798)
+++.. +.+..+|..++.+|.+.|++++|++.|+++.+.+.. +...+..+..+|...|++++|.++|+++.+.. +.+.
T Consensus 93 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 169 (388)
T 1w3b_A 93 ALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA 169 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH
Confidence 99864 336778999999999999999999999999987533 56778889999999999999999999999874 4567
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 437 DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGF 516 (798)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 516 (798)
.+|+.+...|...|++++|+..|+++.+.+.. +...|..+...+...|++++|+..|+++.+.. +.+..++..+...|
T Consensus 170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHH
Confidence 89999999999999999999999999986533 56778888888888888888888888777653 23456666666677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 003749 517 LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 596 (798)
Q Consensus 517 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 596 (798)
.+.|++++|+..|+++.+.... +..+|..+..++.+.|++++|+..|+++.+..
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------- 301 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------------------------- 301 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------------
Confidence 7777777777777666665333 34455555555555555555555555544432
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 597 EIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 597 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
. .+..+++.+...+.+.|++++|+..++++.+.. +.+..++..++.+|.+.|++++|++.|+++++..
T Consensus 302 ----------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 302 ----------P-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp ----------T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred ----------c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2 244455555555555555555555555554432 2334455555555555555555555555555543
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 003749 677 LELDVFTYEALLKACCKSG 695 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g 695 (798)
.. +...|..+...+.+.|
T Consensus 370 p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 370 PT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TT-CHHHHHHHHHHHHHTC
T ss_pred CC-CHHHHHhHHHHHHHcc
Confidence 22 3445555554444433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=266.12 Aligned_cols=216 Identities=15% Similarity=0.209 Sum_probs=176.7
Q ss_pred HHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 003749 560 AIHIVKEMQKERHRPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ---------MEK 629 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---------~~~ 629 (798)
+..+.+++.+.+.... ...++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3444555555544322 335677788888888888888888888888888888888888888876554 688
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 630 AIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 630 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccccccccc
Q 003749 710 QKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFSIPM 775 (798)
Q Consensus 710 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~~~~ 775 (798)
.|+.||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.|+..++..+..+.+.+...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d 234 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWD 234 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBSCCC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999887765555554433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=257.37 Aligned_cols=205 Identities=14% Similarity=0.179 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HH
Q 003749 314 RARQTFENMRARGIEPTL-HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN---------AE 383 (798)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~---------~~ 383 (798)
.+..+.+++.+++..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666655443 35788888888888888888888888888888888888888888887654 45
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 384 AADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 384 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
+|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003749 464 ECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK 518 (798)
Q Consensus 464 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 518 (798)
+.|+.||..+|+.||.+|++.|+.++|.++|++|++.+..|+..||+.|+..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-24 Score=239.16 Aligned_cols=440 Identities=10% Similarity=-0.068 Sum_probs=296.6
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...|.+.|++++|+..|+++.+.+ |+..+|..+..+|.+.|++++|+..|+++++.+ +.+..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456778889999999999999999999984 789999999999999999999999999999875 3478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
|.+.|++++|+..|+++...+.. +......++..+........+.+.+..+...+..++...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999987643 44444445554444444444444333322221111111000000000000000001
Q ss_pred HHHHHHHHHCCC---------CcCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 003749 456 LIVFERLKECGF---------SPSIISYGCLINLYTK---IGKVSKALEVSKVMKS-----SGI--------KHNMKTYS 510 (798)
Q Consensus 456 ~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~~~~~~~~ 510 (798)
..+...+..... ..+...+..+...+.. .|++++|+.+|+++.+ ... ..+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111100 1113344444444443 6778888888877776 211 11245666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 003749 511 MLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAG 590 (798)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 590 (798)
.+...|...|++++|..+|+++.+.... ...+..+..+|...|++++|+..|+++...... +...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 6777778888888888888887776544 667777788888888888888888887776533 5567777777888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003749 591 EMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFT 670 (798)
Q Consensus 591 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 670 (798)
++++|+..|+++.+.... +...+..+...|...|++++|+.+++++.+.. +.+...|..+...|...|++++|...|+
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888776443 56677777778888888888888888877653 3345677778888888888888888888
Q ss_pred HHHHcCCC-CC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 671 KLRNEGLE-LD----VFTYEALLKACCK---SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 671 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
++.+.... ++ ...+..+..+|.. .|++++|...++++.+.. +.+...+..++.+|.+.|++++|.+.|+++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 87765322 11 3377778888888 888888888888887654 456777888888888888888888888888
Q ss_pred HHc
Q 003749 743 KQE 745 (798)
Q Consensus 743 ~~~ 745 (798)
.+.
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 774
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-23 Score=230.49 Aligned_cols=443 Identities=10% Similarity=-0.031 Sum_probs=320.3
Q ss_pred hhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003749 245 RWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRA 324 (798)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 324 (798)
..+|.+.|+. ++|+..|++++..+| +...|..+..+|.+.|++++|+..|+++.+
T Consensus 13 g~~~~~~g~~---------~~A~~~~~~al~~~p----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 67 (514)
T 2gw1_A 13 GNQFFRNKKY---------DDAIKYYNWALELKE----------------DPVFYSNLSACYVSVGDLKKVVEMSTKALE 67 (514)
T ss_dssp HHHHHHTSCH---------HHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccH---------HHHHHHHHHHHhcCc----------------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3346666776 999999999998876 567788999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 003749 325 RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIY 404 (798)
Q Consensus 325 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 404 (798)
.+ +.+..+|..+..+|.+.|++++|+..|+++.+.+. .+......++..+.+......+.+.+..+...+..++...+
T Consensus 68 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 145 (514)
T 2gw1_A 68 LK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145 (514)
T ss_dssp HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred cC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 75 45678999999999999999999999999998753 34455555555555444444444433332222111111111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC
Q 003749 405 GNIIYAQCQTRNMERAEALVRDMEEEGI---------DAPIDIYHMMMDGYTI---IGNEEKCLIVFERLKE-----CGF 467 (798)
Q Consensus 405 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~ 467 (798)
..................+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ ..-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 1100001111111111111111111110 1124455555555554 8889999999998887 311
Q ss_pred --------CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003749 468 --------SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP 539 (798)
Q Consensus 468 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 539 (798)
..+..++..+..++...|++++|+.+|+++.+.... ...+..+...|...|++++|...|+++.+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 302 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN- 302 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-
Confidence 123567788889999999999999999999886533 778888899999999999999999999887544
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (798)
Q Consensus 540 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 619 (798)
+...+..+...|...|++++|+..|+++...... +...+..+...|.+.|++++|+.+|+++.+.... +...+..+..
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 380 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAE 380 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHH
Confidence 6678888999999999999999999999887644 6678888888999999999999999999876443 5678888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 620 GLVEKRQMEKAIEILDEMTLAGIS-PN----EHTYTTIMHGYAS---LGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~t~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
.|...|++++|+..++++.+.... ++ ...|..+..++.. .|++++|...|+++.+.... +..++..+..+|
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 459 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMK 459 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 999999999999999988764211 11 3488899999999 99999999999999987643 678889999999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003749 692 CKSGRMQSALAVTKEMSAQKIPRNTFVYNI 721 (798)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (798)
.+.|++++|...++++.+.. +.+...+..
T Consensus 460 ~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~ 488 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADLA-RTMEEKLQA 488 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SSHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhc-cccHHHHHH
Confidence 99999999999999999865 333444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-23 Score=222.10 Aligned_cols=392 Identities=11% Similarity=0.035 Sum_probs=243.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 003749 347 MEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRD 426 (798)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 426 (798)
...+...+.++.... +.+...+..++..|.+.|++++|+.+|+++.+... .+..++..++.+|...|++++|.+.|++
T Consensus 8 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555566665543 34678888999999999999999999999887643 3788888889999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003749 427 MEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI---ISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (798)
Q Consensus 427 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (798)
+++.+ +.+..++..++.+|...|++++|+.+|+++.+.... +. ..+..++..+...
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~------------------- 144 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ------------------- 144 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-------------------
Confidence 88875 446778888888888999999999999888875322 33 5566554441110
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003749 504 HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPII 583 (798)
Q Consensus 504 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 583 (798)
.+..+...|...|++++|+.+|+++.+.... +..++..++.+|.+.|++++|+.+|+++...... +..++..++
T Consensus 145 ----~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 218 (450)
T 2y4t_A 145 ----RLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKIS 218 (450)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 1111222344445555555555555443322 4444555555555555555555555555443221 344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H
Q 003749 584 HGFARAGEMKRALEIFDMMRRSGCIPTVHTFNAL------------ILGLVEKRQMEKAIEILDEMTLAGISPN-----E 646 (798)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~ 646 (798)
.+|.+.|++++|+..|+++.+.... +...+..+ ...|.+.|++++|+.+|+++.+.. |+ .
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~ 295 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTV 295 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHH
Confidence 5555555555555555555443221 23333222 667777788888888888777642 33 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG- 725 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 725 (798)
..|..++.++.+.|++++|+.+++++++... .+..+|..++.+|...|++++|...++++.+.. +.+...+..+..+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 4677777788888888888888888776643 267777888888888888888888888887754 4456666666633
Q ss_pred -----------HHHcC-----CHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHHcCCccccccc
Q 003749 726 -----------WARRG-----DVWEAADLMQQMKQEGVQPD-----------VHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 726 -----------~~~~g-----~~~~A~~~~~~m~~~g~~pd-----------~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
|...| +.+++.+.++++... ..|| ...|..+..+|...||.++....
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhc
Confidence 33334 566778888764321 2332 23788899999999998877654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-23 Score=229.47 Aligned_cols=434 Identities=10% Similarity=0.024 Sum_probs=319.8
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++++.+ +.+..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567788899999999999999999999975 4578899999999999999999999999999875 3478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI--DAPIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~ 453 (798)
|.+.|++++|+..|+ ...... ......+..+...+...+|.+.++++..... ..........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNG----DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999997 433322 1222234455666677889999988865410 111112233444555666666
Q ss_pred HHHHHHHHHHHCCCCcCHH-HHHHHHHHH--------HHcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHH
Q 003749 454 KCLIVFERLKECGFSPSII-SYGCLINLY--------TKIGKVSKALEVSKVMKSSGIKHN-------MKTYSMLINGFL 517 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~-~~~~li~~~--------~~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~ll~~~~ 517 (798)
.+...+.+.... .+... ....+...+ ...|++++|+.+++++.+... .+ ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHH
Confidence 655554433221 11111 222222222 223578888889888887532 22 224666667788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 003749 518 KLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALE 597 (798)
Q Consensus 518 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 597 (798)
..|++++|...|+++.+... +...+..+...|...|++++|+..|+++...... +..++..+...+.+.|++++|+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 88999999999999888643 4778888888899999999999999998877543 56778888888999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003749 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL 677 (798)
Q Consensus 598 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 677 (798)
.|+++.+.... +...+..+..+|...|++++|+.+|+++.+.. +.+...|..+...+...|++++|.+.|+++.+...
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99998876543 56788888889999999999999999988764 44567888888999999999999999998876421
Q ss_pred -----CCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 678 -----ELDVFTYEALLKACCKS----------GRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 678 -----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
......+..+..+|... |++++|..+++++.+.. +.+...|..++.+|.+.|++++|++.|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 12223345556677777 99999999999988765 567788999999999999999999999998
Q ss_pred HHc
Q 003749 743 KQE 745 (798)
Q Consensus 743 ~~~ 745 (798)
.+.
T Consensus 489 l~~ 491 (537)
T 3fp2_A 489 AIL 491 (537)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-22 Score=220.03 Aligned_cols=303 Identities=10% Similarity=0.083 Sum_probs=217.5
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...+..++..|.+.|++++|+.+|+++.+.. +.+..+|..+..+|...|++++|+..|+++++.+ +.+..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 56778889999999999999999999999874 4578899999999999999999999999999875 336889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNA---IIYGNI------------IYAQCQTRNMERAEALVRDMEEEGIDAPIDIY 439 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 439 (798)
+|.+.|++++|+..|+++.+.+.. +. .++..+ ...+.+.|++++|.++|+++.+.. +.+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999999886432 33 555555 344777888888888888877764 4466777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------
Q 003749 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSML------- 512 (798)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------- 512 (798)
..++.+|...|++++|+.+|+++.+... .+..+|..++.+|...|++++|+..|+++.+.. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 7778888888888888888887776532 256777777888888888888888888777643 2233444333
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHH
Q 003749 513 -----INGFLKLKDWANVFAVFEDVMRDGLKPD----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPII 583 (798)
Q Consensus 513 -----l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 583 (798)
...|.+.|++++|+.+|+++.+.... + ...+..+..++.+.|++++|+..++++...... +...|..+.
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 336 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 55566666666666666666554322 2 234555566666666666666666665554321 445555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 003749 584 HGFARAGEMKRALEIFDMMRRS 605 (798)
Q Consensus 584 ~~~~~~~~~~~a~~~~~~~~~~ 605 (798)
.+|.+.|++++|...|+++.+.
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666666553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-22 Score=222.26 Aligned_cols=430 Identities=8% Similarity=-0.010 Sum_probs=325.7
Q ss_pred hhhhccCCCccccccchhhhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHH
Q 003749 243 RARWVAGNNGEEFRSTWHKEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENM 322 (798)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 322 (798)
....+|.+.|+. +.|...|++++..+|. +...|..+..+|.+.|++++|++.|+++
T Consensus 30 ~~g~~~~~~g~~---------~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 30 NRGNHFFTAKNF---------NEAIKYYQYAIELDPN---------------EPVFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHHTTCC---------C-CHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccH---------HHHHHHHHHHHhhCCC---------------CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333447777777 9999999999999987 6788899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC
Q 003749 323 RARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA--TLN 400 (798)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 400 (798)
.+.+ +.+..++..+..+|...|++++|+..|+ .... .++ .....+..+...+...+|+..++++..... ...
T Consensus 86 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 86 LEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9975 5578899999999999999999999996 4332 222 223345566667777899999999866421 111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCcC-
Q 003749 401 AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP-IDIYHMMMDGYT--------IIGNEEKCLIVFERLKECGFSPS- 470 (798)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~- 470 (798)
.......+..+....+.+.+...+...... .+. ......+...+. ..|++++|+.+|+++.+.... +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~ 236 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DD 236 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CH
T ss_pred ccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cc
Confidence 112233344555566666555444333221 111 112333333322 235789999999999875432 2
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 471 ------IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLY 544 (798)
Q Consensus 471 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 544 (798)
..++..+...+...|++++|+..|+++.+.. |+...+..+...|...|++++|+..|+++.+.... +..++
T Consensus 237 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 313 (537)
T 3fp2_A 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTY 313 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHH
Confidence 2356777788999999999999999999864 55788888999999999999999999999887654 78889
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK 624 (798)
Q Consensus 545 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 624 (798)
..+...+...|++++|+..|+++...... +...+..+..+|.+.|++++|+.+|+++.+.... +...+..+...+...
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHh
Confidence 99999999999999999999999887644 5678888999999999999999999999987543 677888999999999
Q ss_pred CCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 625 RQMEKAIEILDEMTLAG-----ISPNEHTYTTIMHGYASL----------GDTGKAFEYFTKLRNEGLELDVFTYEALLK 689 (798)
Q Consensus 625 ~~~~~A~~~~~~m~~~~-----~~p~~~t~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 689 (798)
|++++|+..|+++.+.. .......+..+..++... |++++|...|+++.+.... +..++..+..
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 470 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQ 470 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 99999999999987542 112233455566777777 9999999999999987643 7789999999
Q ss_pred HHHHcCChHHHHHHHHHHHhCC
Q 003749 690 ACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
+|.+.|++++|...|+++.+..
T Consensus 471 ~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 471 LKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999999865
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-18 Score=186.70 Aligned_cols=364 Identities=13% Similarity=0.099 Sum_probs=282.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003749 315 ARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAAD 386 (798)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~ 386 (798)
++..+....+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455666666654 67777778888877 788888888888888764 67788888888888 88888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 003749 387 HWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIV 458 (798)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 458 (798)
++|++..+.+ +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|+++
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888887764 66777778888877 778888888888888765 56777788888876 7788888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003749 459 FERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFE 530 (798)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 530 (798)
|++..+.| +...+..|..+|.. .++.++|++.|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88888764 67778888888887 788888888888888764 56677777777775 788888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc-----CCHHHHHHHHHH
Q 003749 531 DVMRDGLKPDVVLYNNIIRAFCG----MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA-----GEMKRALEIFDM 601 (798)
Q Consensus 531 ~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~ 601 (798)
+..+.| +...+..|..+|.. .++.++|+.+|++..+.+ +...+..+...|... +++++|+..|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 887753 45667777777777 788888888888887664 445666677777776 788888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 003749 602 MRRSGCIPTVHTFNALILGLVEKR---QMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFTKLRN 674 (798)
Q Consensus 602 ~~~~~~~p~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~~~~ 674 (798)
..+.+ +...+..|...|...| ++++|++.|++..+.+ +...+..|...|.. .+++++|+++|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 88764 4566677777776655 7788888888888753 56778888888887 7888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 003749 675 EGLELDVFTYEALLKACCK----SGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 675 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 711 (798)
.+ +...+..|..+|.+ .+++++|...|++..+.+
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 56777888888887 788888888888888765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-18 Score=185.46 Aligned_cols=353 Identities=14% Similarity=0.089 Sum_probs=310.4
Q ss_pred CHhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCH
Q 003749 295 SRREFGLMVNYYAR----RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSL 366 (798)
Q Consensus 295 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~ 366 (798)
+...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+.+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56677778888888 899999999999999875 77889999999998 899999999999999875 77
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhh
Q 003749 367 VTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDI 438 (798)
Q Consensus 367 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 438 (798)
..+..|...|.. .+++++|+.+|++..+.+ +...+..|..+|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 888899999998 899999999999998875 67888889999987 889999999999999875 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003749 439 YHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYS 510 (798)
Q Consensus 439 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 510 (798)
+..|...|.. .++.++|+.+|++..+.| +...+..|..+|.. .+++++|+.+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 9999999998 899999999999999875 67788889888887 899999999999998864 567777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHCCCCCCcccHHH
Q 003749 511 MLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM-----GNMDRAIHIVKEMQKERHRPTSRTFMP 581 (798)
Q Consensus 511 ~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ 581 (798)
.+...|.. .+++++|+..|++..+.| +...+..|..+|... ++.++|+.+|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 78888887 899999999999998763 567788888999887 89999999999999875 4567777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 582 IIHGFARAG---EMKRALEIFDMMRRSGCIPTVHTFNALILGLVE----KRQMEKAIEILDEMTLAGISPNEHTYTTIMH 654 (798)
Q Consensus 582 li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 654 (798)
+...|.+.| ++++|++.|++..+.+ +...+..|...|.. .+++++|+..|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7899999999999863 67888889888988 899999999999999865 5788889999
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCC
Q 003749 655 GYAS----LGDTGKAFEYFTKLRNEGL 677 (798)
Q Consensus 655 ~~~~----~g~~~~A~~~~~~~~~~~~ 677 (798)
.|.+ .++.++|...|++..+.+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9988 8999999999999998874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-19 Score=185.85 Aligned_cols=332 Identities=10% Similarity=0.051 Sum_probs=203.2
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++|+..|+++++.. +-+..+|..++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4567778888899999999999999998874 4467788888999999999999999999988864 3367888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC--CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHAT--LNAIIYGNI------------IYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 441 (798)
|.+.|++++|+..|+++.+.... .+...+..+ ...+...|++++|.++++++.+.. +.+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999998876431 133444444 344455555555555555555442 233444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003749 442 MMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD 521 (798)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 521 (798)
+..+|...|++++|+..++++.+... .+..++..+..+|...|++++|...|+++.+.. +.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------- 230 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ------- 230 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH-------
Confidence 55555555555555555555544321 134445555555555555555555555544432 111111111100
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCHHHHHH
Q 003749 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTS----RTFMPIIHGFARAGEMKRALE 597 (798)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~ 597 (798)
+. .......+...+.+.|++++|...|+++...... +. ..+..+..++.+.|++++|+.
T Consensus 231 ----------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 231 ----------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp ----------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 00 0001112355566777777777777776665422 22 223345666777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003749 598 IFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS 658 (798)
Q Consensus 598 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 658 (798)
.++++.+.... +...+..+..+|...|++++|...|+++.+.. +-+...+..+..+...
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 77777765332 56677777777777777777777777777653 2334555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-19 Score=184.39 Aligned_cols=343 Identities=11% Similarity=0.022 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 003749 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMD 444 (798)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 444 (798)
|...+..++..+.+.|++++|+..|+++.+.... +..++..+..+|...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4566777778888888888888888888776433 56777777777788888888888887777764 335567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003749 445 GYTIIGNEEKCLIVFERLKECGFS--PSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDW 522 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 522 (798)
+|...|++++|+..|+++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777764320 12223332221110 01122234455666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMM 602 (798)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 602 (798)
++|+.+|+++.+.... +...+..+...+...|++++|+..++++...... +...+..+...+.+.|++++|...|+++
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666655433 4556666666666666666666666666655322 4455556666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-
Q 003749 603 RRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV- 681 (798)
Q Consensus 603 ~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 681 (798)
.+.... +...+..+.. +. .......+...+.+.|++++|...++++.+.... +.
T Consensus 215 ~~~~~~-~~~~~~~~~~-----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 269 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAE 269 (359)
T ss_dssp HHHCTT-CHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred HhhCcc-chHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chH
Confidence 554322 2222211100 00 0011112234455555555555555555554322 22
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003749 682 ---FTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSF 757 (798)
Q Consensus 682 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l 757 (798)
..+..+..+|.+.|++++|..+++++.+.. +.+...|..++.+|.+.|++++|++.|+++.+. .|+ ...+..|
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 346 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 123344555555666666666666555543 335555556666666666666666666665543 232 3344444
Q ss_pred HHHHH
Q 003749 758 INACS 762 (798)
Q Consensus 758 ~~~~~ 762 (798)
..+..
T Consensus 347 ~~~~~ 351 (359)
T 3ieg_A 347 EKAQR 351 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-17 Score=183.05 Aligned_cols=421 Identities=10% Similarity=0.055 Sum_probs=259.7
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|..++. +.+.|++++|+.+|+++.+.. +.+...|..++..+.+.|++++|..+|+++++. .|+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 4556666666 356667777777777776652 445556666777776677777777777776664 245556665554
Q ss_pred HH-HhcCCHHHHHH----HHHHHHhc-CCC-CChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCChhh
Q 003749 375 GF-AKMGNAEAADH----WFEEAKER-HAT-LNAIIYGNIIYAQCQ---------TRNMERAEALVRDMEEEGIDAPIDI 438 (798)
Q Consensus 375 ~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~ 438 (798)
.. ...|++++|++ +|+++... |.. .+...|...+....+ .|++++|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 33455555443 55555432 221 234455555544433 4556666666666655210000112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HCC---CCCC----
Q 003749 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMK------SSG---IKHN---- 505 (798)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~---~~~~---- 505 (798)
|..........|. .+...++. ...++++.|..+++.+. +.. +.|+
T Consensus 168 ~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2211111100110 00011110 12344566666665522 111 2333
Q ss_pred ----HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------CCChH-------H
Q 003749 506 ----MKTYSMLINGFLKL----KDW----ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCG-------MGNMD-------R 559 (798)
Q Consensus 506 ----~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~ 559 (798)
...|...+...... ++. +.+..+|++.+...+. +...|..++..+.+ .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 23555544333222 222 4677788888776443 67788888887775 78876 8
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 560 AIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPT-VHTFNALILGLVEKRQMEKAIEILDEMT 638 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 638 (798)
|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++++.... + ...|..++..+.+.|++++|.++|++..
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8999998886322235677888888888999999999999999885332 3 3578888888888899999999999988
Q ss_pred HCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCC--
Q 003749 639 LAGISPNEHTYTTIMHG-YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK-IPR-- 714 (798)
Q Consensus 639 ~~~~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-- 714 (798)
+.. ..+...|...+.. +...|+.++|..+|+++++.... +...|..++..+.+.|+.++|..+|+++...+ ..+
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 753 2233333332222 34588999999999998876533 67888888988889999999999999998763 122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
....|...+......|+.+.+..+++++.+.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2447888888888889999999999888764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-17 Score=182.10 Aligned_cols=402 Identities=11% Similarity=0.081 Sum_probs=270.8
Q ss_pred cHHHHHHHHHhhc---CCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCChHHHHH---
Q 003749 280 NWQAVVSAFERIK---KPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAY-AVGRDMEEALS--- 352 (798)
Q Consensus 280 ~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~A~~--- 352 (798)
....+...|++.- .-+...|..++..+.+.|++++|+.+|+++++. .|+...|...+... ...|++++|.+
T Consensus 27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 3455555566543 235667999999999999999999999999987 46888888888644 45688877765
Q ss_pred -HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHH
Q 003749 353 -CVRKMKEE-GIEM-SLVTYSIIVGGFAK---------MGNAEAADHWFEEAKERHATLN-AIIYGNIIYAQCQTRNMER 419 (798)
Q Consensus 353 -~~~~m~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 419 (798)
+|++.++. |..+ +...|...+....+ .|++++|+.+|++++.. ...+ ...|..........+. ..
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~-~~ 182 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINI-HL 182 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCH-HH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhch-hH
Confidence 77777653 4433 56788888887665 78999999999999873 1111 1233222211111110 00
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH------HCC---CCcC--------HHHHHHHHHHHH
Q 003749 420 AEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK------ECG---FSPS--------IISYGCLINLYT 482 (798)
Q Consensus 420 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~ 482 (798)
+. .++. ...+++..|..++.++. +.. +.|+ ...|...+....
T Consensus 183 ~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 183 AK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp HH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred HH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11 1110 12334555555555422 111 1222 245555554433
Q ss_pred Hc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCC
Q 003749 483 KI----GKV----SKALEVSKVMKSSGIKHNMKTYSMLINGFLK-------LKDWA-------NVFAVFEDVMRDGLKPD 540 (798)
Q Consensus 483 ~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~ 540 (798)
.. ++. ++++.+|+++.... +.+...|..++..+.+ .|+++ +|..+|++.++.-..-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 32 222 46777888887753 3467778877777765 68876 88889988876212236
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPT-SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALIL 619 (798)
Q Consensus 541 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 619 (798)
...|..++..+.+.|++++|..+|+++...... + ...|..++..+.+.|++++|..+|++..+.... +...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHH
Confidence 778888888899999999999999998886432 2 247888888888889999999999998875322 2333332222
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHHcC
Q 003749 620 G-LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGL-EL--DVFTYEALLKACCKSG 695 (798)
Q Consensus 620 ~-~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g 695 (798)
. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++++..+. .| ....|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999887763 34678888999999999999999999999988743 22 2557888888888899
Q ss_pred ChHHHHHHHHHHHhC
Q 003749 696 RMQSALAVTKEMSAQ 710 (798)
Q Consensus 696 ~~~~A~~~~~~~~~~ 710 (798)
+.+.+..+.+++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-18 Score=178.45 Aligned_cols=283 Identities=10% Similarity=0.000 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 437 DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGF 516 (798)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 516 (798)
.++..++..+...|++++|+.+|+++.+.... +...+..++.++...|++++|+.+++++.+.. +.+...+..+...|
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33344444444444444444444444433211 22333334444444444444444444444332 12233344444444
Q ss_pred HhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 003749 517 LKLK-DWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595 (798)
Q Consensus 517 ~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 595 (798)
...| ++++|...|+++.+.... +...|..+..++...|++++|+..|+++...... +...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHH
Confidence 4444 444444444444433222 2333444444444444444444444444433221 223333344444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHHH
Q 003749 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAG--------ISPNEHTYTTIMHGYASLGDTGKAFE 667 (798)
Q Consensus 596 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~p~~~t~~~li~~~~~~g~~~~A~~ 667 (798)
+..++++.+.... +...+..+...+...|++++|+..++++.+.. ...+..+|..+..+|...|++++|+.
T Consensus 179 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444444443221 34444444445555555555555554443320 01223344444555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 668 YFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
.|+++.+.... +...+..+..+|.+.|++++|...++++.+.. +.+...+..+..++
T Consensus 258 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55555444322 33444444455555555555555555444433 23444444444444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-16 Score=182.60 Aligned_cols=410 Identities=11% Similarity=0.080 Sum_probs=312.9
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGI--EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
-++......++.|...|.+.+|+++|++..-.+- .-+....+.++....+. +..+..+..+++-+. ....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 4566678889999999999999999999994421 13456677777777766 556666666555422 2445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
++..+...|.+++|..+|++... .......+ +-..+++++|.++.++. .+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 88889999999999999999631 22222222 23788999999999866 247889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 452 EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 452 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
+++|+..|.+. -|...|..++.+|.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999764 378889999999999999999999999988764 33333445889999999988644332
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 532 VMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTV 611 (798)
Q Consensus 532 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 611 (798)
+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 2 235667778999999999999999999985 378999999999999999999999873 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
.+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... ..+...|+.|..+|
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 89999999999999999998876542 3456778899999999999999999999888665 44666777777777
Q ss_pred HHcC--ChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHcCCHHHHHHH-------------HHHHHHcCCCCC
Q 003749 692 CKSG--RMQSALAVTKEMSAQKIPR------NTFVYNILIDGWARRGDVWEAADL-------------MQQMKQEGVQPD 750 (798)
Q Consensus 692 ~~~g--~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~m~~~g~~pd 750 (798)
++.. ++.++.++|..-.. +++ +...|.-++-.|.+.|+++.|... |++.+. -..|
T Consensus 1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence 7654 66677777764443 223 567899999999999999999843 222221 1235
Q ss_pred HHHHHHHHHHHHHcC
Q 003749 751 VHTYTSFINACSKAG 765 (798)
Q Consensus 751 ~~~~~~l~~~~~~~g 765 (798)
...|...+.-|....
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 666666666555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-18 Score=176.54 Aligned_cols=282 Identities=8% Similarity=-0.062 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT 447 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 447 (798)
.+..++..+...|++++|+++|+++.+.+.. +...+..++.++...|++++|..+++++.+.. +.+..+|..+...|.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 3334444444444444444444444433211 23333333444444444444444444444432 223334444444444
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 448 IIG-NEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVF 526 (798)
Q Consensus 448 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (798)
..| ++++|+..|++..+.... +...|..+..+|...|++++|+..++++.+.. +.+...+..+...|...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 444 444444444444433211 23344444444444444444444444444432 112233333444444445555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--------CCCcccHHHHHHHHHhcCCHHHHHHH
Q 003749 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERH--------RPTSRTFMPIIHGFARAGEMKRALEI 598 (798)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~ 598 (798)
..|+++.+.... +...+..+...+...|++++|...|+++..... ......+..+..+|.+.|++++|+..
T Consensus 180 ~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 555444443322 344444555555555555555555554443210 11233444555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 599 FDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY 656 (798)
Q Consensus 599 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 656 (798)
|+++.+.... +...+..+..+|.+.|++++|...|+++.+.. +.+...+..+..++
T Consensus 259 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 259 HRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555544322 34445555555555555555555555544432 22334444444444
|
| >4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-21 Score=155.34 Aligned_cols=86 Identities=20% Similarity=0.429 Sum_probs=79.6
Q ss_pred hhhcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 145 ~~~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
+....++++|||||||+++|+++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|++.| ||..++||
T Consensus 13 en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~gr 89 (99)
T 4fxv_A 13 ENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD-KVAGHSLGYGFVNYVTAKDAERAINTL--NGLRLQSK 89 (99)
T ss_dssp ---CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-SSSCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTE
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeec-CCCCcccccEEEEECCHHHHHHHHHHh--CCCEECCE
Confidence 334556779999999999999999999999999999999999 889999999999999999999999999 99999999
Q ss_pred eeeeecccc
Q 003749 225 VLTVKLDDG 233 (798)
Q Consensus 225 ~~~v~~~~~ 233 (798)
+|+|++|+|
T Consensus 90 ~l~V~~AkP 98 (99)
T 4fxv_A 90 TIKVSYARP 98 (99)
T ss_dssp ECEEEECCB
T ss_pred EEEEEEeeC
Confidence 999999976
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-19 Score=185.23 Aligned_cols=331 Identities=12% Similarity=0.010 Sum_probs=175.6
Q ss_pred HhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHH-HHHHHHHCCCC-C--CHHHHHHHHHHHHccCChHH
Q 003749 274 VETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQ-TFENMRARGIE-P--TLHVYTNLIHAYAVGRDMEE 349 (798)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~g~~~~ 349 (798)
+..+...|......+..+...+.. ++.-.|++++|+. .|++..+.... | +...+..+...|.+.|++++
T Consensus 10 i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 10 IESDVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred cccCcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 344444555554444433322211 3444578888888 77766654211 1 34567788888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 350 ALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 350 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
|+.+|+++++.. +.+..+|..++.+|.+.|++++|++.|+++.+.+. .+..++..++.+|...|++++|.+.++++.+
T Consensus 83 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988864 34778888888889999999999999998887753 3677888888888888888888888888887
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 003749 430 EGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKH-NMKT 508 (798)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~ 508 (798)
... .+...+..+... .. .. . ....+..+...+ ..|++++|+.+|+++.+..... +..+
T Consensus 161 ~~~-~~~~~~~~~~~~-------~~-------~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 161 YTP-AYAHLVTPAEEG-------AG-------GA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp TST-TTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred hCc-CcHHHHHHHHHH-------hh-------hh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 642 222222211000 00 00 0 000111112222 5555555555555555432111 3455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 003749 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFAR 588 (798)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 588 (798)
+..+...|...|++++|+..|+++.+.... +..++..+...|...|++++|+..|+++...... +...+..+..+|.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 555555555555555555555555554322 4455555666666666666666666665554322 34455556666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 589 AGEMKRALEIFDMMRRSGCIP----------TVHTFNALILGLVEKRQMEKAIEILDE 636 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~~~~~~A~~~~~~ 636 (798)
.|++++|...|+++.+..... ...+|..+..+|...|++++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 666666666666555432211 145666666666666766666666553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-18 Score=181.35 Aligned_cols=292 Identities=11% Similarity=0.028 Sum_probs=197.1
Q ss_pred chhhhhhHHHH-HHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003749 258 TWHKEREWHRR-EFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTN 336 (798)
Q Consensus 258 ~~~~~~~~a~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (798)
.|.+.++.|.. .|++++...+.+- ..+...+..+...|.+.|++++|+.+|+++.+.. +.+..++..
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 103 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENP-----------LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQY 103 (368)
T ss_dssp ----------CHHHHCCCCCCSSCT-----------TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCc-----------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 46666688887 8887776665410 1134567888999999999999999999999985 557889999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH----------
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN---------- 406 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------- 406 (798)
+..+|.+.|++++|+..|+++++.. +.+..++..++.+|...|++++|++.|+++...... +...+..
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999875 347899999999999999999999999999987543 2222221
Q ss_pred -----HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 003749 407 -----IIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL 480 (798)
Q Consensus 407 -----l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 480 (798)
.+..+...|++++|.+.|+++.+..... +..++..+...|...|++++|+..|+++.+... .+..+|..+..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~ 260 (368)
T 1fch_A 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGAT 260 (368)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHH
Confidence 1222336677777777777776654211 456666677777777777777777777666432 245666666777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP----------DVVLYNNIIRA 550 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----------~~~~~~~li~~ 550 (798)
|...|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence 777777777777777666543 2345566666666666677777766666665532221 14556666666
Q ss_pred HHcCCChHHHHHHHH
Q 003749 551 FCGMGNMDRAIHIVK 565 (798)
Q Consensus 551 ~~~~g~~~~A~~~~~ 565 (798)
|...|+.++|..++.
T Consensus 340 ~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 340 LSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHTCGGGHHHHHT
T ss_pred HHHhCChHhHHHhHH
Confidence 666666666655544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-15 Score=173.49 Aligned_cols=380 Identities=10% Similarity=0.113 Sum_probs=295.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
--...+++|+..|.+.+|+++++++.-.+- .-+....+.|+.+..+. +..+..+..++... .....+..+
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHH
Confidence 345677888899999999999999984421 13445667777777777 45666666665532 124457788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
+...|++++|..+|++... .....+.+ +...+++++|.++.++.. +..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999998631 11222222 337889999999998762 578899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 003749 491 LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (798)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 570 (798)
++.|.+. .|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...++ .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999664 367788889999999999999999999887754 23333445999999999988644432 2
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003749 571 RHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYT 650 (798)
Q Consensus 571 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~ 650 (798)
.++...|..+...|...|++++|..+|..+ ..|..+..+|++.|++++|++.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 235567778999999999999999999985 47999999999999999999999876 3568999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-
Q 003749 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR- 729 (798)
Q Consensus 651 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 729 (798)
.+..+|...|+++.|......+ ..+...+..++..|.+.|.+++|+.+++.....+ +.....|+-|..+|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 9999999999999998876643 3466778899999999999999999999998766 56667888888888764
Q ss_pred -CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCcccccc
Q 003749 730 -GDVWEAADLMQQMKQEGVQP------DVHTYTSFINACSKAGDMQVRFS 772 (798)
Q Consensus 730 -g~~~~A~~~~~~m~~~g~~p------d~~~~~~l~~~~~~~g~~~~a~~ 772 (798)
++..+++++|..-.. +.+ +...|..++-.|.+.|+++.|..
T Consensus 1329 peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 466677776664332 222 56789999999999999999984
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=180.82 Aligned_cols=236 Identities=8% Similarity=-0.065 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
...+..+...+.+.|++++|+.+|+++++.. +.+..+|..++.+|.+.|++++|+..|+++...+. .+..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3346666667777777777777777776653 23566677777777777777777777777766532 256666667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHH
Q 003749 411 QCQTRNMERAEALVRDMEEEGID---------APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PSIISYGCLINL 480 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~ 480 (798)
|...|++++|++.|+++.+.... ....++..+...|...|++++|+.+|+++.+.... .+..++..+..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 77777777777777766654210 00122233456666666666666666666654321 145566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRA 560 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 560 (798)
|...|++++|++.|+++.+.. +.+..+|..+..+|.+.|++++|+..|+++.+.... +..++..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 666666666666666666543 234556666666666666666666666666655333 455566666666666666666
Q ss_pred HHHHHHHHHC
Q 003749 561 IHIVKEMQKE 570 (798)
Q Consensus 561 ~~~~~~~~~~ 570 (798)
...|+++...
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666665543
|
| >3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=150.23 Aligned_cols=82 Identities=15% Similarity=0.342 Sum_probs=78.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+||++++++++|+++|++||.|.+|+|++| +.||+++|||||+|++.++|.+|++.| ||..++||.|+|++
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d-~~tg~~rG~aFV~f~~~~~A~~Ai~~l--ng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLH-PRTRKHLGLARVLFTSTRGAKETVKNL--HLTSVMGNIIHAQL 82 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEC-CCCCceeeEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++.+.
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 96653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-16 Score=172.79 Aligned_cols=142 Identities=10% Similarity=-0.034 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHH
Q 003749 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEH--TYTTIMH-GYASLGDTGKAFEY 668 (798)
Q Consensus 592 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--t~~~li~-~~~~~g~~~~A~~~ 668 (798)
++.|...|+++.+.... +...+..+...|...|++++|+..|++.++....+... .+..+.. .+...|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555544322 33444455555555555555555555555443221111 1122221 22355666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003749 669 FTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEG 746 (798)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 746 (798)
|.+.++... +..... +..+.+..++++....+ +.+..+|+.|+.+|...|++++|++.|++.++.|
T Consensus 395 y~kal~i~~--~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 395 FIEGVKINQ--KSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHSCC--CCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHhcCc--ccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666665432 211111 11233444555555444 4566677777777777777777777777776643
|
| >2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=145.69 Aligned_cols=78 Identities=18% Similarity=0.396 Sum_probs=73.8
Q ss_pred ceeecCCCccCchHHHHHHhcccCc--ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCe----eecceee
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGP--IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV----EFHGRVL 226 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~----~~~g~~~ 226 (798)
+|||+|||+++|+++|+++|++||. |.+|++++| +.||++||||||+|.+.++|.+|++.| ||. .|+||+|
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d-~~tg~srG~aFV~f~~~~~A~~Ai~~l--ng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD-KQTQQNRGFAFVQLSSAMDASQLLQIL--QSLHPPLKIDGKTI 87 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC-SSSSSCSSEEEEECSSSHHHHHHHHHH--HSSSSCEEETTEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec-CCCCCCceEeEEEECCHHHHHHHHHHh--cCCCCCceECCEEE
Confidence 8999999999999999999999995 679999999 899999999999999999999999999 886 5999999
Q ss_pred eeecccc
Q 003749 227 TVKLDDG 233 (798)
Q Consensus 227 ~v~~~~~ 233 (798)
+|++|++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-18 Score=177.61 Aligned_cols=267 Identities=7% Similarity=-0.042 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 471 IISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRA 550 (798)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 550 (798)
...+..+...+.+.|++++|+.+|+++.+.. +.+...|..+..+|...|++++|+..|+++.+.... +..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3345666666666666666666666666543 335566666666666666666666666666665433 45666666666
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCC---------CcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 003749 551 FCGMGNMDRAIHIVKEMQKERHRP---------TSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCI-PTVHTFNALILG 620 (798)
Q Consensus 551 ~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~ 620 (798)
|...|++++|+..|+++.+..... ....+..+...+.+.|++++|+.+|+++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777766666543210 1122233455666667777777777766665322 145666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHH
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSA 700 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 700 (798)
|...|++++|+..|+++.+.. +.+..+|..+..+|...|++++|+..|+++++.... +..++..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 666677777777776666543 334566666666666667777777766666665432 466666666666666666666
Q ss_pred HHHHHHHHhCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 701 LAVTKEMSAQKI-----------PRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 701 ~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
...++++.+..- ..+..+|..|..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666654320 00234566666666666666665555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-17 Score=175.55 Aligned_cols=364 Identities=12% Similarity=-0.008 Sum_probs=184.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE--------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH----- 396 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 396 (798)
....||.|...+...|++++|++.|++.++. .-.....+|+.+..+|...|++++|+..|+++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456788888888888888888888776542 112245677778888888888888888887765421
Q ss_pred --CCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCc
Q 003749 397 --ATLNAIIYGNIIYAQCQ--TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY---TIIGNEEKCLIVFERLKECGFSP 469 (798)
Q Consensus 397 --~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~ 469 (798)
......++..+..++.. .+++++|++.|++.++.. +.+...+..+..++ ...++.++|++.|++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 01123444444444433 345677777777776653 23344444444432 3345556666666666654322
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 470 SIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYN 545 (798)
Q Consensus 470 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 545 (798)
+..++..+...+.. .+++++|.+++++..... +.+...+..+...|...|++++|+..|++..+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 34444444444333 344556666666665543 334555666666666666666666666666655433 445555
Q ss_pred HHHHHHHcC-------------------CChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003749 546 NIIRAFCGM-------------------GNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSG 606 (798)
Q Consensus 546 ~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 606 (798)
.+..+|... +..++|...|++....... +...+..+...|.+.|++++|+..|+++.+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 555554321 1234455555555444322 44455555556666666666666666655543
Q ss_pred CCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003749 607 CIPTV--HTFNALIL-GLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFT 683 (798)
Q Consensus 607 ~~p~~--~~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 683 (798)
..+.. ..+..+.. .+...|++++|+..|++.++. .|+...... ..+.+.+++++.++.... +..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~p~-~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKNGA-DSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHCC--CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhCCC-CHHH
Confidence 22111 11111211 223455566666666655543 222221111 122333444444444322 4445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 684 YEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
|..|..+|...|++++|++.|++.++.
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555666666666666666666655554
|
| >2lxi_A RNA-binding protein 10; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-20 Score=147.08 Aligned_cols=83 Identities=16% Similarity=0.273 Sum_probs=76.4
Q ss_pred cceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.+|||+|||+++|+++|+++|++|| .|.+|++++| +.||++||||||+|.+.++|.+|++.+ .|+..++||+|+|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d-~~t~~~rg~aFV~F~~~~~A~~Ai~~~-~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRN-KSSGQSRGFAFVEFSHLQDATRWMEAN-QHSLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSC-SSSCCCSSEEEEECSSHHHHHHHHHTT-TTEEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHhc-CCCeEECCEEEEEEE
Confidence 5899999999999999999999999 8999999999 899999999999999999999999875 145679999999999
Q ss_pred ccccch
Q 003749 231 DDGRRL 236 (798)
Q Consensus 231 ~~~~~~ 236 (798)
++++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 988753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.8e-18 Score=172.12 Aligned_cols=376 Identities=13% Similarity=0.152 Sum_probs=150.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
+.|++++|.+.++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4556677777777762 2246777777777777777777777442 255567777777777777777777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 388 WFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
+++..++. ..+..+.+.++.+|.+.|++++++++++ .|+..+|+.++..|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655543 2345566667777777777777666663 244557777777777777777777777755
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
..|..|+.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+. .++.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 35667777777777777777777766 156777777777777777777754444321 233444456
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCC------CCHHHHHHHHH
Q 003749 548 IRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARA--GEMKRALEIFDMMRRSGCI------PTVHTFNALIL 619 (798)
Q Consensus 548 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~------p~~~~~~~li~ 619 (798)
+..|.+.|++++|+.+|+...... .-....|+.|..+|++- +++.+.+++|..-. ++. -+...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 677777777777777777766554 23445555555555543 33444444443111 111 13456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CC-------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 620 GLVEKRQMEKAIEILDEMTLA-GI-------------SPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYE 685 (798)
Q Consensus 620 ~~~~~~~~~~A~~~~~~m~~~-~~-------------~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 685 (798)
.|.+-++++.|.... .+. .. ..+...|-..+.-|... .-.++.-+-..+... .|. +
T Consensus 291 ly~~~~e~d~A~~tm---~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~~l~~ll~~l~~~--ld~---~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPR--LDH---T 360 (449)
T ss_dssp HHHHTTCHHHHHHHH---HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGG--CCH---H
T ss_pred HHHhhchHHHHHHHH---HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc--cCc---H
Confidence 788888888776543 222 11 22334444444444411 111122222222111 122 4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 686 ALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQ 740 (798)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 740 (798)
.++..+.+.|.+.-+..++..+... .+..+=..|-+.|....|++.-...++
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4556667777777777777776654 355555667777777777765554444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-17 Score=168.85 Aligned_cols=373 Identities=8% Similarity=0.074 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|...|+++- ....|+.|+.++.+.|++++|++.|.+. +|..+|..++..+..
T Consensus 20 d~A~~fae~~~--------------------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 20 DRAYEFAERCN--------------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCC--------------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHh
Confidence 77777777771 2346789999999999999999999653 477799999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (798)
.|++++|+..++..++. .++..+.+.++.+|.+.|+++++.++++ .++..+|..++..|...|++++|...
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988877764 3467889999999999999999998885 25777999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003749 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIK 503 (798)
Q Consensus 424 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 503 (798)
|..+ ..|..|+.++.+.|++++|.+.+.++ -++.+|..++.+|...|+++.|......+ .
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~ 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----V 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----T
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----H
Confidence 9977 46999999999999999999999998 27899999999999999999996655542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHCCCCC------C
Q 003749 504 HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGM--GNMDRAIHIVKEMQKERHRP------T 575 (798)
Q Consensus 504 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~ 575 (798)
........++..|.+.|++++|+.+++..+... .-....|+.|.-+|++- +++.+.+++|..- .++.+ +
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~ 281 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQ 281 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 344445578899999999999999999988765 33577788887777765 3455555555421 11111 5
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003749 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGC-----------IPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISP 644 (798)
Q Consensus 576 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 644 (798)
...|..+...|.+.++++.|....-+-..... ..+...|-..|.-|.... ..++.-+-..... +.
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--p~~l~~ll~~l~~--~l 357 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--PLLLNDLLMVLSP--RL 357 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC--GGGHHHHHHHHGG--GC
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC--HHHHHHHHHHHHh--cc
Confidence 67899999999999999988775433211100 113334444444333111 1111111111111 11
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003749 645 NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVT 704 (798)
Q Consensus 645 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (798)
| .+.++..+.+.|++.-+..++..+.+.+ +..+-.+|-..|....+++.-..-+
T Consensus 358 d---~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 358 D---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp C---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C---cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 1 2334455566666666666666665432 4455556666666666665444433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-17 Score=166.77 Aligned_cols=264 Identities=8% Similarity=-0.040 Sum_probs=180.3
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+...|++++|+.+|+++.+.. +.+..++..+..+|.+.|++++|+..|+++.+.. +.+..++..++..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3456777888999999999999999998874 4477888899999999999999999999998874 3478889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNI--------------IY-AQCQTRNMERAEALVRDMEEEGIDAPIDIYH 440 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 440 (798)
|...|++++|++.|+++...... +...+..+ .. ++...|++++|.+.++++.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999999886433 33333333 22 3556666777777777766654 33556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK 520 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 520 (798)
.++..|...|++++|+..++++.+... .+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+...|...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 666677777777777777776665432 245566666666666666666666666666543 234556666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHcCCChHHHHHHHH
Q 003749 521 DWANVFAVFEDVMRDGLKP-----------DVVLYNNIIRAFCGMGNMDRAIHIVK 565 (798)
Q Consensus 521 ~~~~a~~~~~~~~~~g~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 565 (798)
++++|...|+++.+..... +...|..+..++.+.|+.++|..+++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666666666665543221 24455555666666666666655554
|
| >3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-19 Score=157.27 Aligned_cols=84 Identities=13% Similarity=0.364 Sum_probs=78.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccC--cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..++||||||++++++++|+++|++|| .|.+|+++.| +.+|+++|||||+|.+.++|.+|++.| ||..|+||.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d-~~tg~skGfaFV~f~~~~~A~~Ai~~l--ng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN-RANGQSKGYAEVVVASENSVHKLLELL--PGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHS--TTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEeE
Confidence 346999999999999999999999999 9999999999 899999999999999999999999999 99999999999
Q ss_pred eecccccch
Q 003749 228 VKLDDGRRL 236 (798)
Q Consensus 228 v~~~~~~~~ 236 (798)
|+++.+...
T Consensus 131 V~~a~~~~~ 139 (156)
T 3n9u_C 131 VRPATRQNL 139 (156)
T ss_dssp EEECCHHHH
T ss_pred EEEcCCCcc
Confidence 999977643
|
| >2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=146.49 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=75.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 115 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID-KQTSLSKCFGFVSFDNPDSAQVAIKAM--NGFQVGTKRLKVQ 115 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC-SSSSCCCCEEEEEEESSHHHHHHHHHC--CCCEETTEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCcCcEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=164.72 Aligned_cols=259 Identities=7% Similarity=-0.064 Sum_probs=140.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 003749 477 LINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGN 556 (798)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 556 (798)
+...+...|++++|+.+|+++.+.. +.+...+..+...|...|++++|...|+++.+.... +..++..+...|...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCC
Confidence 3333444444444444444443322 123333444444444444444444444444443222 33444444444444455
Q ss_pred hHHHHHHHHHHHHCCCCCCcccHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 557 MDRAIHIVKEMQKERHRPTSRTFMPI--------------IH-GFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGL 621 (798)
Q Consensus 557 ~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 621 (798)
+++|+..++++...... +...+..+ .. .+...|++++|..+++++.+.... +...+..+...|
T Consensus 105 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 55555444444443221 11122111 11 255566677777777777665433 566666677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003749 622 VEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSAL 701 (798)
Q Consensus 622 ~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 701 (798)
...|++++|+..++++.+.. +.+..+|..+...+...|++++|...|+++.+.... +..++..+..+|.+.|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHH
Confidence 77777777777777766543 334566667777777777777777777776665432 5666666777777777777777
Q ss_pred HHHHHHHhCCCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 702 AVTKEMSAQKIPR------------NTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 702 ~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
..++++.+.. +. +...|..+..++.+.|++++|..++++.
T Consensus 261 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 261 KQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777666543 11 3556666777777777777777666543
|
| >3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-19 Score=143.07 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=72.6
Q ss_pred cceeecCCCccCchHHHHHHhcccC--cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.+|||||||+++++++|+++|++|| .|.+++++.| +.+|+++|||||+|.+.++|.+|++.| ||..++||.|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~-~~~g~~kG~afV~f~~~~~a~~Ai~~l--~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC-TTTCCEEEEEEECC-CHHHHHHHHHHG--GGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec-CCCCccCcEEEEEECCHHHHHHHHHHc--CCCeeCCEEEEEE
Confidence 5899999999999999999999999 9999999999 889999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.+..
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 997763
|
| >1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=140.72 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=73.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.+..++..|+||+|+|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3469999999999999999999999999999999987 899999999999999999987223578999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
+++++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99887654
|
| >3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-19 Score=145.01 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=78.7
Q ss_pred ccceeecCCCc------cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc-
Q 003749 151 EGKIFVGNLPN------WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG- 223 (798)
Q Consensus 151 ~~~~~v~nl~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g- 223 (798)
+++|||||||. ++++++|+++|++||.|.+|+|++| +.||+++|||||+|.+.++|.+|++.| ||..++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d-~~tg~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPID-EATGKTKGFLFVECGSMNDAKKIIKSF--HGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHh--CCcccCCC
Confidence 45899999999 9999999999999999999999999 889999999999999999999999999 9999999
Q ss_pred eeeeeecccccch
Q 003749 224 RVLTVKLDDGRRL 236 (798)
Q Consensus 224 ~~~~v~~~~~~~~ 236 (798)
|.|+|.+++++..
T Consensus 83 r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 83 HRLFLYTMKDVER 95 (100)
T ss_dssp CBCEEEESHHHHH
T ss_pred eEEEEEECchhhh
Confidence 9999999987643
|
| >3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=136.54 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=77.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||||||.++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc-CCCCCccceEEEEECCHHHHHHHHHHh--cCCeeCCcEEEEEec
Confidence 58999999999999999999999999999999998 789999999999999999999999999 999999999999999
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
+++
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 876
|
| >2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=139.22 Aligned_cols=84 Identities=14% Similarity=0.407 Sum_probs=79.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+++|||||||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD-PQTGRSKGYAFIEFRDLESSASAVRNL--NGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-TTTCCBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEE
Confidence 469999999999999999999999999999999998 889999999999999999999999999 99999999999999
Q ss_pred ccccchh
Q 003749 231 DDGRRLK 237 (798)
Q Consensus 231 ~~~~~~~ 237 (798)
++++...
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9887643
|
| >2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=131.00 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=70.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
...||||||++.+||++|+++|.+||+|.+++++.. ||||||+|.+.++|.+|++.| |+..+.||.|+|++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-------kGfaFVey~~~~eA~~Ai~~L--n~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-------QGIALCKYTTREEANKAQMAL--NNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-------CcEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEEE
Confidence 348999999999999999999999999999999764 999999999999999999999 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
|...
T Consensus 78 A~e~ 81 (89)
T 2wbr_A 78 PSEN 81 (89)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 9543
|
| >3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=137.84 Aligned_cols=82 Identities=23% Similarity=0.394 Sum_probs=76.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 4569999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 98764
|
| >2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-18 Score=137.69 Aligned_cols=80 Identities=19% Similarity=0.486 Sum_probs=76.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKD-KDTRKSKGVAFILFLDKDSAQNCTRAI--NNKQLFGRVIKAS 91 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCC-SSSCCCTTCEEEEESCHHHHHHHHHHT--TTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEEE
Confidence 4469999999999999999999999999999999998 888999999999999999999999999 9999999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 875
|
| >3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-18 Score=136.73 Aligned_cols=79 Identities=14% Similarity=0.252 Sum_probs=72.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee--ecceee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE--FHGRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~--~~g~~~ 226 (798)
.++++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+ |+.. ++||+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~AFVef~~~~~A~~Av~~l--n~~~~~i~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-------KRQALVEFEDVLGACNAVNYA--ADNQIYIAGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--HHSCEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHh--cCCCceeCCcEE
Confidence 45679999999999999999999999999999999876 899999999999999999999 7664 889999
Q ss_pred eeecccccch
Q 003749 227 TVKLDDGRRL 236 (798)
Q Consensus 227 ~v~~~~~~~~ 236 (798)
+|++++++.+
T Consensus 90 ~V~~S~~k~l 99 (100)
T 3r27_A 90 FVNYSTSQKI 99 (100)
T ss_dssp EEEECSCSCC
T ss_pred EEEecccccc
Confidence 9999988753
|
| >2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=138.30 Aligned_cols=81 Identities=23% Similarity=0.415 Sum_probs=77.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|++|+|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRVS 90 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC-SSSSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEc-CCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4569999999999999999999999999999999998 888999999999999999999999999 9999999999999
Q ss_pred cccc
Q 003749 230 LDDG 233 (798)
Q Consensus 230 ~~~~ 233 (798)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
|
| >3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=136.15 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=76.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC-CCCCccccEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 875
|
| >2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-18 Score=138.89 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=77.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 91 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTN-R-AGKPKGLAYVEYENESQASQAVMKM--DGMTIKENIIKVA 91 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTEESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC-C-CCCEEeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999998 5 8999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998774
|
| >2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-18 Score=141.82 Aligned_cols=79 Identities=28% Similarity=0.440 Sum_probs=74.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||.++++++|+++|++|| |.+|+++++...+|+++|||||+|.+.++|.+|+ .| ||..|+|+.|+|+++
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l--~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNRRIRVDVA 95 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT--TTCCBTTBCCCCEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc--CCCEECCeEEEEEec
Confidence 4999999999999999999999999 9999999983369999999999999999999999 88 999999999999999
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
+++
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 776
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-16 Score=155.13 Aligned_cols=253 Identities=9% Similarity=0.068 Sum_probs=175.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTL--HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (798)
|+.....|+++.|+..++..... .|+. .....+.++|...|++++|+..++.. -+++..++..++..+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 34455678888888877765543 2332 34455677888888888888766442 2456677777888888888
Q ss_pred CHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 381 NAEAADHWFEEAKERHA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
+.++|++.|+++...+. +-+...+..+..+|...|++++|++.+++ +.+..++..++.+|.+.|+.++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888776653 33566667777788888888888888876 346677777788888888888888888
Q ss_pred HHHHHCCCCcCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003749 460 ERLKECGFSPSIISY---GCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG 536 (798)
Q Consensus 460 ~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 536 (798)
+++.+.. |+.... ..++..+...|++++|+.+|+++.+.. +.+...++.+..+|.+.|++++|...|+++++..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887753 332211 122344444577888888888877763 4567777777777778888888888888777765
Q ss_pred CCCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHHCC
Q 003749 537 LKPDVVLYNNIIRAFCGMGNMDR-AIHIVKEMQKER 571 (798)
Q Consensus 537 ~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~ 571 (798)
+. +..++..++..+...|+.++ +..+++++.+..
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 44 66677777777777777765 456777776653
|
| >1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=146.13 Aligned_cols=82 Identities=20% Similarity=0.478 Sum_probs=78.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|++
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD-RETRQSRGYGFVKFQSGSSAQQAIAGL--NGFNILNKRLKVAL 118 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEE-TTTTEEEEEEEEEESSHHHHHHHHHHT--TTEECSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEEE
Confidence 459999999999999999999999999999999998 789999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98775
|
| >2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=148.51 Aligned_cols=82 Identities=16% Similarity=0.349 Sum_probs=77.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceE--EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCe----eecc
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV----EFHG 223 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~----~~~g 223 (798)
..++|||||||+++++++|+++|++||.|.. |+|++| +.+|++||||||+|.+. +|.+|+..| ||. .++|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d-~~tg~~rG~aFV~f~~~-~a~~Ai~~l--~g~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKD-KQTQLNRGFAFIQLSTI-EAAQLLQIL--QALHPPLTIDG 97 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBC-SSSSSBCSCEEEECCHH-HHHHHHHHH--TTCCCSCCGGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEc-CCCCCcceEEEEEECCH-HHHHHHHHh--cCCCCCccCCC
Confidence 3459999999999999999999999999976 999999 88999999999999999 999999999 999 9999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
|.|+|++++++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998764
|
| >2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-18 Score=140.76 Aligned_cols=84 Identities=24% Similarity=0.413 Sum_probs=79.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||.++++++|+++|++||.|.+|++.++ +.+|+++|||||+|.+.++|.+|+..| ||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 89 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD-KTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNV 89 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHc--CCCeeCCcEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++++.
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998775
|
| >2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=140.05 Aligned_cols=85 Identities=25% Similarity=0.459 Sum_probs=80.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC-SSSCCCSSEEEECCSSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887533
|
| >2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=141.42 Aligned_cols=84 Identities=21% Similarity=0.460 Sum_probs=79.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.| |+..|+|+.|+|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID-KQTNLSKCFGFVSYDNPVSAQAAIQSM--NGFQIGMKRLKVQ 100 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-CCCCCcCccEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 788999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987753
|
| >2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-18 Score=140.90 Aligned_cols=83 Identities=24% Similarity=0.441 Sum_probs=75.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.+ +..++|+.|+|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~tg~~kg~afV~f~~~~~A~~Ai~~~---~~~l~g~~l~V 98 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQS---RHELDSKTIDP 98 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC-TTTCCCTTCEEEEESSHHHHHHHHHSS---CEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC-CCCCCcCcEEEEEECCHHHHHHHHHHC---CCcCCCEEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999876 59999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++.++.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998774
|
| >4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-18 Score=143.35 Aligned_cols=79 Identities=25% Similarity=0.486 Sum_probs=73.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++++++|+++|++||.|.+|+|++| + +.+||||||+|.+.++|.+|++.| ||..|+||.|+|+++
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d-~--~~~kg~afV~f~~~~~A~~Ai~~l--~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGRF 80 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T--TEEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEES
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeec-C--CCCCceEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 48999999999999999999999999999999987 3 457999999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
+++.
T Consensus 81 ~~~~ 84 (115)
T 4f25_A 81 KSRK 84 (115)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7764
|
| >2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.2e-18 Score=137.53 Aligned_cols=84 Identities=25% Similarity=0.535 Sum_probs=79.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD-SDTGRSKGYGFITFSDSECARRALEQL--NGFELAGRPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECC-SSSCCCCSEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeec-CCCCceeeEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 81 ~a~~~~~ 87 (95)
T 2dnz_A 81 HVTERLD 87 (95)
T ss_dssp ESSCCCC
T ss_pred EcccccC
Confidence 9988753
|
| >2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=136.85 Aligned_cols=82 Identities=15% Similarity=0.271 Sum_probs=74.0
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+..++..++||+|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 34569999999999999999999999999999999876 89999999999999999998733578899999999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
++++++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999887654
|
| >2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-18 Score=140.13 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=78.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE-PHTKAPRGFAFVRFHDRRDAQDAEAAM--DGAELDGRELRVQ 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBC-SSSCSBCSCEEEEESSSSHHHHHHHHH--SSCCBTTBCCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCCCCeEEEEEECCHHHHHHHHHHc--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 888999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++++..
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998764
|
| >1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.2e-18 Score=138.65 Aligned_cols=84 Identities=27% Similarity=0.424 Sum_probs=79.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID-SLTKKPKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRMLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC-TTTCCCCSEEEEEESSHHHHHHHHHHT--TTEESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 779999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9988753
|
| >2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=141.78 Aligned_cols=82 Identities=18% Similarity=0.365 Sum_probs=77.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|+ .| ||..|+|+.|+|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD-RNSRRSKGIAYVEFCEIQSVPLAI-GL--TGQRLLGVPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS-CCSSSCCCCEEEEESCGGGHHHHH-HH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEec-CCCCccCcEEEEEeCcHHHHHHHH-Hc--CCCEeCCeEEEEE
Confidence 4469999999999999999999999999999999998 888999999999999999999999 88 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 987764
|
| >1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.4e-18 Score=140.33 Aligned_cols=83 Identities=25% Similarity=0.461 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD-RVTGQHQGYGFVEFLSEEDADYAIKIM--DMIKLYGKPIRVN 90 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCSBCSCEEEEESSHHHHHHHHHHS--SSCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCcCCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 3459999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998764
|
| >2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-18 Score=138.82 Aligned_cols=78 Identities=31% Similarity=0.473 Sum_probs=75.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceE--------EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
++|||||||.++++++|+++|++||.|.+ ++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~G~afV~f~~~~~a~~Ai~~l--~g~~~~g 90 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWF--DGKEFSG 90 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEEC-TTTCSEEEEEEEEBSSHHHHHHHHHHH--TTCBSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEec-CCCCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCC
Confidence 49999999999999999999999999999 999998 889999999999999999999999999 9999999
Q ss_pred eeeeeeccc
Q 003749 224 RVLTVKLDD 232 (798)
Q Consensus 224 ~~~~v~~~~ 232 (798)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
|
| >2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=142.25 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=79.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 89 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD-MATGKSKGYGFVSFFNKWDAENAIQQM--GGQWLGGRQIRT 89 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 779999999999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=154.01 Aligned_cols=253 Identities=8% Similarity=0.064 Sum_probs=170.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003749 338 IHAYAVGRDMEEALSCVRKMKEEGIEMS--LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415 (798)
Q Consensus 338 l~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (798)
++.....|++..|+..+++.... .|+ ......+..+|...|++++|+..++.. ..++..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 34455678888888887765443 233 245566778888888888888766541 2345667777777888888
Q ss_pred ChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 416 NMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVS 494 (798)
Q Consensus 416 ~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (798)
+.++|++.++++...+. +.+...+..+..+|...|++++|++.|++ ..+...+..++.+|.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888877653 33456666777788888888888888776 246677777778888888888888888
Q ss_pred HHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 495 KVMKSSGIKHNMKTY---SMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 495 ~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
+++.+.. |+.... ..++..+...|++++|+.+|+++.+..+. +...++.+..++.+.|++++|+..|+++....
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8877653 332211 12233344457777777777777766433 66677777777777777777777777776664
Q ss_pred CCCCcccHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 003749 572 HRPTSRTFMPIIHGFARAGEMKR-ALEIFDMMRRSG 606 (798)
Q Consensus 572 ~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~ 606 (798)
.. +..++..++..+...|+.++ +.++++++.+..
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33 55566666767777776654 456667666653
|
| >2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=137.82 Aligned_cols=83 Identities=25% Similarity=0.532 Sum_probs=78.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++ + |+..++|+.|+|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD-AEKQRPRGFGFITFEDEQSVDQAVN-M--HFHDIMGKKVEVK 84 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC-TTTCSCCSEEEEEESSHHHHHHHHH-H--CCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCCCceEEEEECCHHHHHHHHH-h--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999998 8899999999999999999999998 8 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987753
|
| >2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-17 Score=144.29 Aligned_cols=83 Identities=24% Similarity=0.443 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~l--ng~~i~g~~l~V~ 121 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRVD 121 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECC-SSSSCCCCEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997763
|
| >1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=141.19 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=79.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC------Ceeecc
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD------GVEFHG 223 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~------~~~~~g 223 (798)
+.++|||+|||+++++++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|+..+ | +..|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~~--~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH-PDTEHSKGCAFAQFMTQEAAQKCLAAA--SLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCCBCSEEEEEESSHHHHHHHHHHH--CTTTTTCCEESSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCCccEEEEEECCHHHHHHHHHHh--ccccccCCcEEcC
Confidence 4569999999999999999999999999999999999 889999999999999999999999999 9 999999
Q ss_pred eeeeeecccccch
Q 003749 224 RVLTVKLDDGRRL 236 (798)
Q Consensus 224 ~~~~v~~~~~~~~ 236 (798)
+.|+|++++++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987753
|
| >2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-18 Score=140.74 Aligned_cols=82 Identities=24% Similarity=0.524 Sum_probs=78.0
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|++
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD-SETGRSKGYGFITFSDSECAKKALEQL--NGFELAGRPMKVGH 102 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEE-TTTTEEEEEEEEEESCHHHHHHHHHHH--TTCCSSSSCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 359999999999999999999999999999999998 789999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98763
|
| >3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=134.78 Aligned_cols=82 Identities=20% Similarity=0.364 Sum_probs=77.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|+ .+ ||..++|+.|+|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~-~~--~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD-KFSGHPKGFAYIEFSDKESVRTSL-AL--DESLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEES-CSSSSCCEEEEEEESSTHHHHHHG-GG--TTCEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHH-hc--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999 88 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 81 ~a~~~~ 86 (89)
T 3ucg_A 81 PKRTNR 86 (89)
T ss_dssp ETTTTS
T ss_pred EccCCC
Confidence 997753
|
| >1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-18 Score=138.78 Aligned_cols=80 Identities=15% Similarity=0.293 Sum_probs=74.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++|+++|+++|++||.|.+|++++| +. |+++|||||+|.+.++|.+|+. + ||..++|+.|.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d-~~-g~~rG~aFV~F~~~e~a~~Ai~-~--~~~~~~gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-LH-KAFKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECC-CT-TSCCCEEEEEESSHHHHHHHHT-S--SCCCCTTTTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEEC-CC-CCCccEEEEEECCHHHHHHHHH-c--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 55 9999999999999999999998 7 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
++...
T Consensus 85 ~~~~~ 89 (103)
T 1s79_A 85 FKDDY 89 (103)
T ss_dssp EHHHH
T ss_pred EchHH
Confidence 87553
|
| >1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.4e-18 Score=137.48 Aligned_cols=83 Identities=24% Similarity=0.433 Sum_probs=78.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEE-EEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+.++|||+|||.++++++|+++|++||.|.++ +++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD-PDTGNSKGYAFINFASFDASDAAIEAM--NGQYLCNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC-TTTCSCCSEEEEEBSSHHHHHHHHHTT--TTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc-CCCCCcCeEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 45699999999999999999999999999999 99998 789999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++++.
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9998775
|
| >1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-18 Score=140.41 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=78.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
++++|||||||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 98 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISVD 98 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESCHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEec-CCCCceeeEEEEEECCHHHHHHHHHHh--cCCEECCcEEEEE
Confidence 4469999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++++
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 99765
|
| >1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=140.35 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|+
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 101 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBC-TTTSSBCSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCcEEEEE
Confidence 4569999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997764
|
| >2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-18 Score=130.35 Aligned_cols=75 Identities=25% Similarity=0.478 Sum_probs=71.5
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+|||||||+++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++ + ||..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD-KTTNRHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBC-SSSTTSCBEEEEECSCHHHHHHHHS-S--SCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHH-C--CCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999998 7799999999999999999999997 7 999999999999875
|
| >2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=135.47 Aligned_cols=80 Identities=29% Similarity=0.576 Sum_probs=75.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ +. |+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~-~~-g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKD-RE-GKPKSFGFVCFKHPESVSYAIALL--NGIRLYGRPINVS 90 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TT-SCEEEEEEEEESSTHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEEC-CC-CCCceEEEEEECCHHHHHHHHHHh--CCCEECCCEEEEE
Confidence 4469999999999999999999999999999999998 44 999999999999999999999999 9999999999999
Q ss_pred cccc
Q 003749 230 LDDG 233 (798)
Q Consensus 230 ~~~~ 233 (798)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9865
|
| >1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-18 Score=136.68 Aligned_cols=77 Identities=12% Similarity=0.233 Sum_probs=70.7
Q ss_pred cccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC--eeecceee
Q 003749 150 QEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG--VEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~--~~~~g~~~ 226 (798)
+.++|||||||+ ++++++|+++|++||.|.+|+|+++ +|||||+|++.++|.+|++.| |+ ..|+||+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l--~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYY--TTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHH--HHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHH--cCCCceECCcEE
Confidence 456999999999 9999999999999999999999987 799999999999999999998 64 56999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|++++...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999997543
|
| >2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=140.32 Aligned_cols=83 Identities=31% Similarity=0.641 Sum_probs=78.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||.++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-R-TSKSRGFAFITFENPADAKNAAKDM--NGKSLHGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECS-T-TTTCCCEEEEECSSHHHHHHHHHHC--SSCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-C-CCCcccEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 5 8999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++++.
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9998765
|
| >1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-18 Score=135.04 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=76.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD-KTTNKCKGYGFVDFDSPSAAQKAVTAL--KASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC-SSSCSCCSEEEEEESCHHHHHHHHHHH--HHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHh--cCCeEeeEEEeec
Confidence 4569999999999999999999999999999999998 889999999999999999999999999 9999999999998
Q ss_pred cccc
Q 003749 230 LDDG 233 (798)
Q Consensus 230 ~~~~ 233 (798)
+.++
T Consensus 81 ~~~s 84 (85)
T 1x4e_A 81 GPSS 84 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
|
| >1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=138.67 Aligned_cols=83 Identities=30% Similarity=0.576 Sum_probs=78.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| |+..|+|+.|+|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD-RETQRSRGFGFVTFENIDDAKDAMMAM--NGKSVDGRQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC-SSSCSCCSEEEEECSSHHHHHHHHHHH--TTCCTTSCCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCCcccEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 4569999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998765
|
| >2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=139.01 Aligned_cols=80 Identities=28% Similarity=0.483 Sum_probs=74.5
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.+|++.++ + ++++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~--~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 103 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVNN 103 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCB-T--TBCTTEEEEECCCSHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEEC-C--CCCceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 359999999999999999999999999999999987 3 458999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
|
| >2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=137.22 Aligned_cols=83 Identities=27% Similarity=0.476 Sum_probs=77.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCC---CCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNN---FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ +. ||+++|||||+|.+.++|.+|+..| ||..|+|+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~gt~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l 80 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKK-KNKAGVLLSMGFGFVEYKKPEQAQKALKQL--QGHTVDGHKL 80 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-ECTTCCEEEEEEEEEEESSHHHHHHHHHHS--TTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCCcCcccEEEEEECCHHHHHHHHHHh--CCCeeCCeEE
Confidence 4569999999999999999999999999999999988 44 6699999999999999999999999 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|++++++.
T Consensus 81 ~V~~a~~~~ 89 (98)
T 2cpf_A 81 EVRISERAT 89 (98)
T ss_dssp EEECSSCSS
T ss_pred EEEEccCCC
Confidence 999998775
|
| >3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=131.90 Aligned_cols=79 Identities=25% Similarity=0.514 Sum_probs=73.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++. ++..++|+.|+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~~g~~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD-PNTGRSRGFGFILFKDAASVEKVLDQ---KEHRLDGRVIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSTHHHHHHHHS---SCEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec-CCCCccccEEEEEECCHHHHHHHHHh---CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 88999999999999999999999964 688999999999
Q ss_pred ecc
Q 003749 229 KLD 231 (798)
Q Consensus 229 ~~~ 231 (798)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
|
| >2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=138.61 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=73.6
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC--Ceeecceee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--~~~~~g~~~ 226 (798)
.+.++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.+ + +..|+||+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l--~~~~~~l~Gr~l 99 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYY--TSVTPVLRGQPI 99 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHH--HHHCCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--ccCCceECCeEE
Confidence 45679999999999999999999999999999999987 899999999999999999988 6 568999999
Q ss_pred eeecccccchh
Q 003749 227 TVKLDDGRRLK 237 (798)
Q Consensus 227 ~v~~~~~~~~~ 237 (798)
+|++++++...
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
|
| >1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=137.78 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=76.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCC-CCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF-EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.++|||+|||+++++++|+++|++|| |.+|+++++ +.+ |+++|||||+|.+.++|.+|+ .| |+..|+|+.|+|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~-~~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPRE-PSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNKRIRVD 89 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBC-SSCTTSBCSCEEEEESSHHHHHHHH-GG--GTCEETTEECEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecC-CCCCCCcCeEEEEEECCHHHHHHHH-hc--CCCEeCCcEEEEE
Confidence 46999999999999999999999999 999999998 666 999999999999999999999 88 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9988753
|
| >2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=137.01 Aligned_cols=83 Identities=14% Similarity=0.360 Sum_probs=78.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcce-EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee---
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK-NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV--- 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~--- 225 (798)
+.++|||||||+++++++|+++|++||.|. +++++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN-RLTGIPAGYCFVEFADLATAEKCLHKI--NGKPLPGATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC-SSSCCEEEEEEEECSCHHHHHHHHHTT--TTSEESSCSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec-CCCCCcCCEEEEEeCCHHHHHHHHHHH--cCCccCCCCcce
Confidence 456999999999999999999999999999 9999998 889999999999999999999999999 999999999
Q ss_pred -eeeecccccc
Q 003749 226 -LTVKLDDGRR 235 (798)
Q Consensus 226 -~~v~~~~~~~ 235 (798)
|+|+++++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997764
|
| >2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=139.11 Aligned_cols=84 Identities=21% Similarity=0.348 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee---cceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF---HGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~---~g~~~ 226 (798)
+.++|||||||.++++++|+++|++||.|.+|+++.| +.+|+++|||||+|.+.++|.+|++.| ||..+ .|+.|
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~~g~~l 88 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD-RFTGMHKGCAFLTYCERESALKAQSAL--HEQKTLPGMNRPI 88 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCC-SSSCSCCSEEEEEESSHHHHHHHHHHH--TTTCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHh--cCCcccCCCCceE
Confidence 3459999999999999999999999999999999998 889999999999999999999999999 99988 89999
Q ss_pred eeecccccch
Q 003749 227 TVKLDDGRRL 236 (798)
Q Consensus 227 ~v~~~~~~~~ 236 (798)
+|++++++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987753
|
| >1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=130.00 Aligned_cols=76 Identities=24% Similarity=0.473 Sum_probs=72.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.+ + ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~a~~~~--~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLAQS--R-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC-CCSSSCSSEEEECCCCTTHHHHHHHTT--T-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC-CCCCCcCceEEEEEcCHHHHHHHHHhC--C-CccCCEEEEEEec
Confidence 48999999999999999999999999999999998 788999999999999999999999998 7 9999999999876
|
| >2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=136.87 Aligned_cols=82 Identities=28% Similarity=0.471 Sum_probs=76.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++|| |.+|+++++ +.+|+++|||||+|.+.++|.+|+ .| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~ 88 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRD-KDTDKFKGFCYVEFDEVDSLKEAL-TY--DGALLGDRSLRVD 88 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHG-GG--TTCEETTEECEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeec-CCCCccceEEEEEECCHHHHHHHH-hh--CCCeECCeEEEEE
Confidence 346999999999999999999999997 999999999 889999999999999999999999 78 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987753
|
| >2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=134.89 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=73.9
Q ss_pred cceeecCC----CccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCC----hhH----HHHHHH--hcccC
Q 003749 152 GKIFVGNL----PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG----PAA----EKSAMK--AVEFD 217 (798)
Q Consensus 152 ~~~~v~nl----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~a~~--~~~~~ 217 (798)
..|||||| ++.+++.+|+++|+.||+|.++.++.| +.||+|+|||||+|.+ ++. |.+|+. .+ |
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~D-p~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l--n 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFND-PNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES--S 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEEC-TTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT--T
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh--c
Confidence 58999999 999999999999999999999999999 9999999999999996 333 788888 56 9
Q ss_pred Ceeecceeeeeecccccch
Q 003749 218 GVEFHGRVLTVKLDDGRRL 236 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~~~ 236 (798)
|..|+||.|+|++.+...+
T Consensus 80 g~~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 80 GCFIMGFKFEVILNKHSIL 98 (136)
T ss_dssp CEEETTEEEEEEECCTTHH
T ss_pred CCeecCcEEEEEECcccHH
Confidence 9999999999999877754
|
| >2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=139.44 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=79.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcce--------EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
.+.++|||+|||+++++++|+++|++||.|. .|++..+ +.+|+++|||||+|.+.++|.+|++.| ||..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~ 89 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD-KETGKPKGDATVSYEDPPTAKAAVEWF--DGKD 89 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC-TTTCSBCSEEEEEBSSHHHHHHHHHHH--TTCE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe-CCCCCeeeEEEEEECCHHHHHHHHHHc--CCCc
Confidence 3456999999999999999999999999999 6999998 889999999999999999999999999 9999
Q ss_pred ecceeeeeecccccch
Q 003749 221 FHGRVLTVKLDDGRRL 236 (798)
Q Consensus 221 ~~g~~~~v~~~~~~~~ 236 (798)
|+|+.|+|++++++..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987753
|
| >2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=137.62 Aligned_cols=83 Identities=25% Similarity=0.446 Sum_probs=77.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc---eee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG---RVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g---~~~ 226 (798)
+.++|||||||.++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..+.| +.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-P-DGSSKGCAFVKFSSHTEAQAAIHAL--HGSQTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-S-SSCEEEEEEEEESSHHHHHHHHHHH--SSCCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCcCcEEEEEeCCHHHHHHHHHHH--cCCccCCCCCccE
Confidence 4569999999999999999999999999999999998 4 7999999999999999999999999 9999998 999
Q ss_pred eeecccccch
Q 003749 227 TVKLDDGRRL 236 (798)
Q Consensus 227 ~v~~~~~~~~ 236 (798)
+|++++++..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987753
|
| >1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=137.87 Aligned_cols=85 Identities=29% Similarity=0.528 Sum_probs=79.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYD-RETGKPKGYGFCEYQDQETALSAMRNL--NGREFSGRALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEE-TTTTEEEEEEEEECSCHHHHHHHHHHS--SSBSCSSSCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeC-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
+++++...
T Consensus 84 ~a~~~~~~ 91 (104)
T 1p1t_A 84 NAASEKNK 91 (104)
T ss_dssp ETTCTTHH
T ss_pred eCCCccch
Confidence 99887543
|
| >2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-17 Score=133.83 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=74.4
Q ss_pred cccceeecCCCccCchHHHH----HHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
+.++|||||||+++++++|+ ++|++||.|.+|+++.| +.+ +|||||+|.+.++|.+|++.| ||..++||.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~-~~~---rg~afV~f~~~~~A~~Ai~~l--~g~~~~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPH-TDY---QLKAVVQMENLQDAIGAVNSL--HRYKIGSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSC-CST---TCCEEEEESSHHHHHHHHHHH--TTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeC-CCC---CeEEEEEECCHHHHHHHHHHh--CCCEECCeE
Confidence 45699999999999999999 99999999999999988 444 899999999999999999999 999999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|++++++.
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=164.29 Aligned_cols=345 Identities=13% Similarity=0.084 Sum_probs=165.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDM---EEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
+...+.+.|++++|+++|+++.+.| +...+..|...|...|+. ++|+.+|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445555566666666666655544 333444455555555555 5555555555532 33444444443333
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 003749 379 MG-----NAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEE 453 (798)
Q Consensus 379 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (798)
.| ++++|+.+|++..+.+ +...+..|...|...+...++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~-------------------------------- 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNV-------------------------------- 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTC--------------------------------
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCH--------------------------------
Confidence 33 4455555555555543 2224444444444433322211
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 003749 454 KCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKAL----EVSKVMKSSGIKHNMKTYSMLINGFLKLK---DWANVF 526 (798)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~ 526 (798)
++.+.+.+..+.| +...+..|...|...+.++++. .+++..... +...+..|..+|.+.| +.++|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHH
Confidence 2233333333222 2334444445555544333222 222222221 1224455555555555 566666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHCCCCCCcccHHHHHHH-H--HhcCCHHHHHHHH
Q 003749 527 AVFEDVMRDGLKPDVVLYNNIIRAFCGM----GNMDRAIHIVKEMQKERHRPTSRTFMPIIHG-F--ARAGEMKRALEIF 599 (798)
Q Consensus 527 ~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~ 599 (798)
..|++..+.|.. +...+..|..+|... +++++|+.+|++.. .+ +...+..|... | ...+++++|+..|
T Consensus 200 ~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 200 KQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 666666555443 444444555555433 46666666666665 22 34445555544 2 3466777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 003749 600 DMMRRSGCIPTVHTFNALILGLVEKR-----QMEKAIEILDEMTLAGISPNEHTYTTIMHGYAS----LGDTGKAFEYFT 670 (798)
Q Consensus 600 ~~~~~~~~~p~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~ 670 (798)
++..+.| +...+..|...|. .| ++++|+..|++.. . -+...+..|...|.. ..+.++|..+|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 7766654 4555555655555 33 7777777777665 2 345566666666655 336777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 003749 671 KLRNEGLELDVFTYEALLKACCK----SGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 671 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 711 (798)
+..+.|. ......|..+|.. ..+.++|...+++..+.|
T Consensus 347 ~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 347 TAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 7776653 2344555555553 346777777777777665
|
| >2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-17 Score=138.79 Aligned_cols=82 Identities=30% Similarity=0.449 Sum_probs=76.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.+ |+ .|+|+.|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~~--~~-~~~g~~l~V 90 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD-RQTGKSRGYGFVTMADRAAAERACKDP--NP-IIDGRKANV 90 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC-SSSCCCCSEEEEEESSHHHHHHHHTCS--SC-EETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc-CCCCccceEEEEEECCHHHHHHHHHhC--CC-cCCCEEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999988 88 899999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
++++..
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 999654
|
| >2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-17 Score=139.78 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=78.6
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..+.++|||||||.++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+ .+ ||..|+|+.|+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~ 108 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD-KFSGHPKGYAYIEFAERNSVDAAV-AM--DETVFRGRTIK 108 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE-CTTSSCEEEEEEEESSHHHHHHHH-TT--TTCEETTEECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCCcccEEEEEECCHHHHHHHH-hc--CCCeECCeEEE
Confidence 345679999999999999999999999999999999998 789999999999999999999999 78 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|+++++..
T Consensus 109 V~~a~~~~ 116 (124)
T 2jwn_A 109 VLPKRTNM 116 (124)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998764
|
| >2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-17 Score=136.35 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=77.6
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|++..+ +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V 87 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEM--NGRIVATKPLYV 87 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEE
Confidence 35569999999999999999999999999999999986 7999999999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987753
|
| >2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=136.66 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=76.7
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLVL 91 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHT--TTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE-CCCCCeeeEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEEE
Confidence 358999999999999999999999999999988888 789999999999999999999999999 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
++.+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8765
|
| >1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-17 Score=134.07 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=71.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.|..++..++|++|+|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4569999999999999999999999999999999876 899999999999999999988223455999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987754
|
| >4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=133.11 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=75.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCC-CcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK-NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.++|||+|||.++++++|+++|++||.|.++++..+ +.++. ++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE-RMHPHLSKGYAYVEFENPDEAEKALKHM--DGGQIDGQEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTEEEEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeC-CCCCCCCCcEEEEEEecHHHHHHHHHHc--CCCeECCeEEEEE
Confidence 469999999999999999999999999999999998 55555 8999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.+..
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987653
|
| >2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=137.65 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=76.7
Q ss_pred ccccceeecCCCccCchHHHH---HHhcccCcceEEEEecCCCCCC---CCcceEEEEeCChhHHHHHHHhcccCCeeec
Q 003749 149 RQEGKIFVGNLPNWIKKHLVM---EFFRQFGPIKNVILIKGYNNFE---KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH 222 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 222 (798)
.+.++|||||||+++++++|+ ++|++||.|.+|++.++ +.+| +++|||||+|.+.++|.+|++.| ||..|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~-~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l--ng~~~~ 89 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS-TSYAGSQGPSASAYVTYIRSEDALRAIQCV--NNVVVD 89 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECC-SSCCSSSCCCEEEEEEESSHHHHHHHHHHH--TTEEET
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecC-CCcCccCCCCeEEEEEECcHHHHHHHHHHh--CCCEEC
Confidence 345699999999999999999 99999999999999988 5543 56699999999999999999999 999999
Q ss_pred ceeeeeecccccc
Q 003749 223 GRVLTVKLDDGRR 235 (798)
Q Consensus 223 g~~~~v~~~~~~~ 235 (798)
|+.|+|++++++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998875
|
| >2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-18 Score=135.85 Aligned_cols=80 Identities=34% Similarity=0.529 Sum_probs=73.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.+ |.+|+..| ||..++|+.|+|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~-a~~a~~~l--~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD-RETKKPKGFGFVEMQEES-VSEAIAKL--DNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC-SSSCCCCEEEEEEECTTH-HHHHHHTS--CSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc-CCCCCcceEEEEEECCHH-HHHHHHHh--CCCEECCeEEEEEEc
Confidence 48999999999999999999999999999999998 888999999999999999 99999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
.+..
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-17 Score=180.38 Aligned_cols=151 Identities=15% Similarity=0.178 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 610 TVHTFNALILGLVEKRQMEKAIEILDEMTL---AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686 (798)
Q Consensus 610 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 686 (798)
-..+||+||++|++.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356777777777777777777777766653 36677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 003749 687 LLKACCKSGRM-QSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD------VHTYTSFIN 759 (798)
Q Consensus 687 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~~~~~l~~ 759 (798)
||.+|++.|+. ++|.++|++|.+.|+.||..+|++++.+..+. .+++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 77777777763 66777777777777777777777777655443 444555555 3355554 334445555
Q ss_pred HHHHcC
Q 003749 760 ACSKAG 765 (798)
Q Consensus 760 ~~~~~g 765 (798)
.|.+.|
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555554
|
| >1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.4e-17 Score=137.20 Aligned_cols=84 Identities=25% Similarity=0.448 Sum_probs=78.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|+.. |+..|+|+.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD-PASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC-TTTSSCCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-CCCCCcCceEEEEeCCHHHHHHHHHh---CCcEECCEEEEE
Confidence 34569999999999999999999999999999999998 88999999999999999999999974 899999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99988753
|
| >2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=135.49 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=75.5
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|++.| |+..|+||.|+|++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLSG 91 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE-CTTSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe-CCCCCEeeEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEEe
Confidence 469999999999999999999999999999999988 789999999999999999999999999 99999999999998
Q ss_pred ccc
Q 003749 231 DDG 233 (798)
Q Consensus 231 ~~~ 233 (798)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
|
| >2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=136.60 Aligned_cols=83 Identities=24% Similarity=0.364 Sum_probs=77.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+||+.++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECC-S-SSSCCSEEEEEESSHHHHHHHHHHH--TTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHHHc--CCCEECCcEEEE
Confidence 34569999999999999999999999999999999998 5 8999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++.+..
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997654
|
| >2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-17 Score=137.16 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=77.7
Q ss_pred cccceeecCCCccCchHHHHHHhcc-cCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee-ecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQ-FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE-FHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~-~~g~~~~ 227 (798)
+.++|||||||+++++++|+++|++ ||.|.+|+++.+ + +|+++|||||+|.+.++|.+|++.| ||.. ++|+.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~g~~l~ 83 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-Q-TGVSKGYGFVKFTDELEQKRALTEC--QGAVGLGSKPVR 83 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC-T-TCCEEEEEEEEESCHHHHHHHHHHT--TTCCSSSSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHHHc--cCCcccCCEeEE
Confidence 4569999999999999999999999 999999999998 6 9999999999999999999999999 9999 9999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|++++++.
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99997765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=162.37 Aligned_cols=270 Identities=9% Similarity=0.017 Sum_probs=147.6
Q ss_pred cHHHHHHHHHhhcC-CCHhhHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----ChHHH
Q 003749 280 NWQAVVSAFERIKK-PSRREFGLMVNYYARRGDM---HRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-----DMEEA 350 (798)
Q Consensus 280 ~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-----~~~~A 350 (798)
.+...+..|.+.-. -+...+..|...|...|+. ++|+.+|++..+. +...+..|..++...+ ++++|
T Consensus 18 ~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 45555666654321 2445566777788888888 9999999999865 6667777877666655 78999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 351 LSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA---ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (798)
Q Consensus 351 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 427 (798)
+..|++..+.| +...+..|...|...+..++ +.+.+.+....+ +...+..+...|...+.++++.+....+
T Consensus 94 ~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 94 ESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 99999999976 33478888888888766544 444454444443 4567777778888777665555544433
Q ss_pred HHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHC
Q 003749 428 EEEGIDAPIDIYHMMMDGYTIIG---NEEKCLIVFERLKECGFSPSIISYGCLINLYTKI----GKVSKALEVSKVMKSS 500 (798)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~ 500 (798)
.+.-...+...+..|..+|...| +.++|+.+|++..+.|.. +...+..|..+|... +++++|++.|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 33222233446777777777777 777777777777766533 444445555555443 56677777776665 3
Q ss_pred CCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHH
Q 003749 501 GIKHNMKTYSMLING-F--LKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMG-----NMDRAIHIVKEMQ 568 (798)
Q Consensus 501 ~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~ 568 (798)
| +...+..|... | ...+++++|+..|++..+.| +...+..|..+|. .| ++++|+.+|++..
T Consensus 246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 2 33444444444 2 34566666666666666543 4455555555554 23 5555555555544
|
| >1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=134.62 Aligned_cols=81 Identities=27% Similarity=0.523 Sum_probs=74.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++..+ ++++|||||+|.+.++|.+|++.| |+..|+|+.|+|+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR----RGGPPFAFVEFEDPRDAEDAVYGR--DGYDYDGYRLRVE 94 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS----SSSSCCEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999654 568999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9987753
|
| >1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-17 Score=133.59 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=71.4
Q ss_pred ccccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.+.++|||||||++ +++++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.|..++..|+||+|+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 45679999999998 999999999999999999999865 8999999999999999999883345669999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|++++.+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997664
|
| >3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-17 Score=136.04 Aligned_cols=80 Identities=26% Similarity=0.423 Sum_probs=75.7
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+|||+++++++|+++|++||.|.+|+++.+ + +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-R-SGRSLGTADVHFERKADALKAMKQY--NGVPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEE
Confidence 34569999999999999999999999999999999998 5 9999999999999999999999999 999999999999
Q ss_pred eccc
Q 003749 229 KLDD 232 (798)
Q Consensus 229 ~~~~ 232 (798)
+++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
|
| >2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-17 Score=134.33 Aligned_cols=84 Identities=24% Similarity=0.486 Sum_probs=78.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|+.. |+..|+|+.|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~V 89 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD-KTTNQSRGFGFVKFKDPNCVGTVLAS---RPHTLDGRNIDP 89 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC-SSSCCEEEEEEEEESSTTHHHHHHHH---CSEEETTEEEBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCCcceEEEEEECCHHHHHHHHHh---CCCeECCEEEEE
Confidence 34569999999999999999999999999999999998 88999999999999999999999975 899999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987753
|
| >2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=132.88 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=75.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|+. ++..++|+.|+|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD-LKTGHSKGFGFVRFTEYETQVKVMS----QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHH----SCEEETTEEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEec-CCCCCccceEEEEECCHHHHHHHHH----cCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999998 8899999999999999999999997 5789999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqg_A 89 LPNSKQ 94 (103)
T ss_dssp CCCTTC
T ss_pred ecCCCC
Confidence 998774
|
| >2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-17 Score=131.85 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=75.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.++++.++ +|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME---NGKSKGCGVVKFESPEVAERACRMM--NGMKLSGREIDVR 81 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHH--TTCCBTTBCCCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 3469999999999999999999999999999999874 7899999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 998764
|
| >2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=133.04 Aligned_cols=81 Identities=25% Similarity=0.448 Sum_probs=74.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++++ +. .++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~--~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HT--SNDPYCFVEFYEHRDAAAALAAM--NGRKILGKEVKVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC-CC--SSCCEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec-CC--CCCCEEEEEECCHHHHHHHHHHh--CCCCcCCCeEEEE
Confidence 4569999999999999999999999999999999987 33 36899999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998765
|
| >2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=132.40 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=75.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++.+ + +.++|||||+|.+.++|.+|+..| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~--~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC-T--TTTCCEEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-C--CCCcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4469999999999999999999999999999999987 3 338999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988753
|
| >2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-17 Score=136.15 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=76.5
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+..++|||+|||+++++++|+++|++||.|.+|++..+ + +|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 88 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILED-K-DGKSRGIGTVTFEQSIEAVQAISMF--NGQLLFDRPMHV 88 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC-T-TCSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCeeeEEEEEECCHHHHHHHHHHh--CCCEeCCCEEEE
Confidence 34569999999999999999999999999999999998 4 5999999999999999999999999 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
++++..
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998654
|
| >2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-17 Score=134.35 Aligned_cols=80 Identities=28% Similarity=0.416 Sum_probs=73.8
Q ss_pred ccceeecCCCccC------chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 151 EGKIFVGNLPNWI------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 151 ~~~~~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
.++|||||||+.+ ++++|+++|++||.|.+|++. +.+|+++|||||+|.+.++|.+|+..| ||..++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~---~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC---CBTTBSCCEEEEEECSSSHHHHHHHHC--SSEECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee---CCCCCeeeEEEEEECCHHHHHHHHHHh--CCcccCCC
Confidence 4599999999999 789999999999999999988 358999999999999999999999999 99999999
Q ss_pred -eeeeecccccc
Q 003749 225 -VLTVKLDDGRR 235 (798)
Q Consensus 225 -~~~v~~~~~~~ 235 (798)
+|+|+++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987653
|
| >2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-17 Score=138.07 Aligned_cols=79 Identities=14% Similarity=0.333 Sum_probs=72.3
Q ss_pred ccceeecCCCccCchHHHH----HHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 151 EGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+++||||||++++++++|+ ++|++||.|.+|.+.+ +|++||||||+|.+.++|.+|+..| ||..|.|++|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~----~~~~rG~aFV~F~~~~~A~~Ai~~l--ng~~l~gr~l 102 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL----SDDNSGKAYIVFATQESAQAFVEAF--QGYPFQGNPL 102 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC----CCSSCCCEEEEESSHHHHHHHHHHS--TTCCCTTSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc----CCCcCCEEEEEECCHHHHHHHHHHH--CCCEeCCCEE
Confidence 4589999999999999876 6999999999988743 5889999999999999999999999 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|++++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998774
|
| >2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-17 Score=141.13 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=79.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~g~~~G~afV~F~~~~~A~~Ai~~l--~g~~i~g~~l~V 121 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRV 121 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC-SSSSSCCSCCEEECSCHHHHHHHHTTT--TTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++++..
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998764
|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=139.69 Aligned_cols=79 Identities=24% Similarity=0.461 Sum_probs=74.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVN 138 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC-TTTCCCCSEEEEEESCHHHHHHHHHHS--TEEEETTEEEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec-CCCCCcCcEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 889999999999999999999999999 9999999999998
Q ss_pred cc
Q 003749 230 LD 231 (798)
Q Consensus 230 ~~ 231 (798)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
|
| >2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-17 Score=133.81 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=70.8
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.++++.+. +|||||+|.+.++|.+|+..| ||..++|+.|+|++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE-------KGCCFIKYDTHEQAAVCIVAL--ANFPFQGRNLRTGW 97 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECCCCB
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC-------CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEEe
Confidence 469999999999999999999999999999999854 899999999999999999999 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9764
|
| >3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-17 Score=140.06 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=78.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD-RRTGYLKGYTLVEYETYKEAQAAMEGL--NGQDLMGQPISVD 97 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-TTTSSBCSCEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCeeCCeEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 997654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-14 Score=144.52 Aligned_cols=226 Identities=11% Similarity=0.119 Sum_probs=163.1
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CC----HHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MS----LVTY 369 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~ 369 (798)
...|..+...|...|++++|+.+|+++.+.. .+..++..+..+|...|++++|+..|+++++.... ++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456778888888888999999888888876 67788888888888888888888888888764211 11 5778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003749 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (798)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 449 (798)
..++..|.+.|++++|+..|+++..... + ...+.+.|++++|.+.++++.... +.+..++..+...|...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 8888888888888888888888877532 2 234566677788888887777753 23455667777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003749 450 GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVF 529 (798)
Q Consensus 450 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 529 (798)
|++++|+..|+++.+.... +..+|..+..+|...|++++|+..|+++.+.. +.+...+..+...|.+.|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777777765322 56667777777777777777777777776653 334566666777777777777777777
Q ss_pred HHHHHc
Q 003749 530 EDVMRD 535 (798)
Q Consensus 530 ~~~~~~ 535 (798)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-17 Score=178.98 Aligned_cols=119 Identities=15% Similarity=0.281 Sum_probs=88.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 576 SRTFMPIIHGFARAGEMKRALEIFDMMRR---SGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTI 652 (798)
Q Consensus 576 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~l 652 (798)
..+|++||++|++.|++++|.++|.+|.+ .|+.||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45677777777777777777777766653 467777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003749 653 MHGYASLGD-TGKAFEYFTKLRNEGLELDVFTYEALLKACCKS 694 (798)
Q Consensus 653 i~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 694 (798)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 777777776 366777777777777777777777777655444
|
| >2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-17 Score=136.07 Aligned_cols=83 Identities=22% Similarity=0.409 Sum_probs=77.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc-ceEEEEe-cCCCCCCCCcceEEEEeCChhHHHHHHHhcccC--Ceeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILI-KGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD--GVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~--~~~~~g~~ 225 (798)
+.++|||||||+++++++|+++|++||. |.+++++ .+ +.+|+++|||||+|.+.++|.+|++.| | +..++|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~~g~~~~~g~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA-ADKMKNRGFAFVEYESHRAAAMARRKL--MPGRIQLWGHQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS-CTTTTTCCEEEEEESSHHHHHHHHTTT--TTCCSCBTTBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC-CCCCCcCcEEEEEecCHHHHHHHHHHh--hCCCceecCCe
Confidence 4569999999999999999999999998 9999998 56 889999999999999999999999988 7 79999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|++++++.
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999998775
|
| >2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=132.34 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=72.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
..+|||+|||+++++++|+++|++| .|.+|+|+.| +. |+++|||||+|.+.++|.+|+ .+ |+..|+||.|.|..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d-~~-g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKD-HV-GRNNGNGLVKFLSPQDTFEAL-KR--NRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCC-TT-CCCCSEEEEECSSHHHHHHHH-HT--TTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEEC-CC-CCCCeEEEEEECCHHHHHHHH-hc--CCCeECCeEEEEEE
Confidence 4599999999999999999999999 8999999998 54 999999999999999999999 57 99999999999988
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
+..+
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8554
|
| >2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=134.22 Aligned_cols=85 Identities=29% Similarity=0.437 Sum_probs=77.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||.++++++|+++|++||.|.+|++.++.+.+|+++|||||+|.+.++|.+|+..| .|+..|+|+.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL-CHSTHLYGRRLVLE 92 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH-HTCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh-ccCCeECCCEEEEE
Confidence 44699999999999999999999999999999999874568999999999999999999999865 15999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998775
|
| >2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-17 Score=127.99 Aligned_cols=73 Identities=29% Similarity=0.461 Sum_probs=67.9
Q ss_pred cceeecCCCccC------chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce-
Q 003749 152 GKIFVGNLPNWI------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR- 224 (798)
Q Consensus 152 ~~~~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~- 224 (798)
++|||||||.++ ++++|+++|++||.|.++++. +.+|+++|||||+|.+.++|.+|++.| ||..++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~---~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNA--DGYKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC---CBTTBCCCEEEEEESSHHHHHHHHTTS--SSCCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec---CCCCcEeEEEEEEECCHHHHHHHHHHh--cCcccCCce
Confidence 589999999999 679999999999999999987 358999999999999999999999999 99999999
Q ss_pred eeeee
Q 003749 225 VLTVK 229 (798)
Q Consensus 225 ~~~v~ 229 (798)
+|+|.
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88873
|
| >2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=131.74 Aligned_cols=80 Identities=28% Similarity=0.521 Sum_probs=74.1
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
..++.++|||||||+++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.| ||..++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l--~g~~~~g~~l 81 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVEL--DNMPLRGKQL 81 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHH--TTCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCEEEEEECCHHHHHHHHHHh--CCCEeCCceE
Confidence 3345679999999999999999999999999999999876 899999999999999999999 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|++++++.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 999998764
|
| >1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-17 Score=125.94 Aligned_cols=75 Identities=25% Similarity=0.380 Sum_probs=70.8
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+|||||||+++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++. ++..++|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFITFKEEEPVKKIMEK---KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS-CCCSSSCCCEEEECSSSHHHHHHHTT---SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCcCCEEEEEECCHHHHHHHHHh---CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999998 88899999999999999999999973 789999999999875
|
| >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.6e-17 Score=136.12 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=74.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc---ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+.++|||||||+++++++|+++|++||. |.+|+|+.+ +. |+++|||||+|.+.++|.+|++ + |+..|+||.|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~-~~-g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i 90 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYT-RE-GRQSGEAFVELESEDDVKLALK-K--DRESMGHRYI 90 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEEC-SS-SCEEEEEEEEBSSHHHHHHHGG-G--TTEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEEC-CC-CCCCeEEEEEECCHHHHHHHHh-c--CCCeECCeEE
Confidence 4568999999999999999999999999 899999998 55 9999999999999999999998 8 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|.++..+.
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999986553
|
| >2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=132.57 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=71.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++|||||||+++++++|+++|++|| .|..+++..+ +++|||||+|.+.++|.+|++.| ||..++||.|+|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-----~~rGfaFV~F~~~e~A~~Ai~~l--ng~~l~Gr~i~V 99 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-----DFDGTGALEFPSEEILVEALERL--NNIEFRGSVITV 99 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-----SSSCCEEEEESSHHHHHHHHHHT--TTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-----CCCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEE
Confidence 456999999999999999999999999 9999988643 46999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++.+.
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9997653
|
| >1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=144.12 Aligned_cols=85 Identities=26% Similarity=0.490 Sum_probs=79.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||.++++++|+++|++||.|.+|+|+.+ +.+|+++|||||+|.+.++|.+|++.| |+..|+|+.|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD-KMKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 34569999999999999999999999999999999998 889999999999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
+++++...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987653
|
| >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-17 Score=139.49 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=75.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc---ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
+.++|||||||+++|+++|+++|++||. |.+|+|++| +. |+++|||||+|.+.++|.+|++ + |+..|+||.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d-~~-g~srG~aFV~F~~~e~a~~Al~-~--~g~~l~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYT-RE-GRQSGEAFVELGSEDDVKMALK-K--DRESMGHRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEEC-SS-SCEEEEEEEECSSHHHHHHHHT-T--TEEESSSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEEC-CC-CCCCeEEEEEECCHHHHHHHHh-c--CCCEECCEEE
Confidence 4469999999999999999999999999 899999998 55 9999999999999999999998 8 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|.++..+.
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999986553
|
| >1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-17 Score=139.23 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=75.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.++.++.+ +.+|+++|||||+|.+.++|.+|+. + ||..|+||.|+|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEE-CCCCCCCeEEEEEECCHHHHHHHHH-h--CCCeECCcEEEEE
Confidence 3469999999999999999999999999998766666 6799999999999999999999999 8 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986654
|
| >1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=131.25 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=73.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||+++++++|+++|++||. .+|+|+.| + +|+++|||||+|.+.++|.+|+ .+ |+..|+||.|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al-~~--~~~~~~gr~i~V~ 87 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIG-P-DGRVTGEADVEFATHEDAVAAM-AK--DKANMQHRYVELF 87 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEES-S-SSCEEEEEEEECSSSHHHHHHH-TT--SSCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEEC-C-CCCEeeEEEEEECCHHHHHHHH-Hh--CCCeECCcEEEEE
Confidence 3469999999999999999999999995 49999998 5 8999999999999999999999 46 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
.+....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887664
|
| >2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=134.68 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=75.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcc-eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPI-KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+.++|||+|||+++++++|+++|++||.| .+|+|+.| + +|+++|||||+|.+.++|.+|++. |+..|+||.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d-~-~g~~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~v 88 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD-N-NGQGLGQALVQFKNEDDARKSERL---HRKKLNGREAFV 88 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC-T-TSSCSSCEEEECSSHHHHHHHGGG---CSEEETTEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHh---CCCccCCeEEEE
Confidence 44699999999999999999999999999 89999998 5 899999999999999999999863 899999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997764
|
| >1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-17 Score=135.64 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=74.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.. .++.+ +.+|+++|||||+|.+.++|.+|++ | ||..++|+.|+|++
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~-~~~g~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLEK 91 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHHH-G--GGCCBTTBCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec-CCCCCcCcEEEEEECCHHHHHHHHh-c--CCcEECCcEEEEEE
Confidence 459999999999999999999999999998 66777 7789999999999999999999998 8 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98775
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-14 Score=141.64 Aligned_cols=223 Identities=16% Similarity=0.167 Sum_probs=131.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--C----cccHHHH
Q 003749 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP--T----SRTFMPI 582 (798)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~~l 582 (798)
+..+...+...|++++|+.+|+++.+.. .+...+..+..+|...|++++|+..|+++....... + ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 233444444444444444444444444443322110 0 2444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003749 583 IHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDT 662 (798)
Q Consensus 583 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 662 (798)
...|.+.|++++|+..|+++.+.. ++. ..+...|++++|...++++.... ..+...|..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 555555666666666665555532 221 23445566677777777666542 22345666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 663 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQM 742 (798)
Q Consensus 663 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 742 (798)
++|+..|+++++.... +..++..+..+|.+.|++++|...++++.+.. +.+...|..++.+|.+.|++++|++.+++.
T Consensus 156 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777777776543 56777777778888888888888888777654 456777788888888888888888888877
Q ss_pred HHc
Q 003749 743 KQE 745 (798)
Q Consensus 743 ~~~ 745 (798)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 663
|
| >2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=127.43 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=74.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||+++++++|+++|++| .|.+|+++++ .+|+++|||||+|.+.++|.+|+. + ||..|+||.|+|.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~--~~g~~~g~afV~f~~~~~a~~A~~-~--~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN--AHGNKTGYIFVDFSNEEEVKQALK-C--NREYMGGRYIEVF 82 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC--TTSCEEEEEEEECSSHHHHHHHHH-S--CSEEETTEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC--CCCCCceEEEEEECCHHHHHHHHH-h--CCceeCCcEEEEE
Confidence 34699999999999999999999999 9999999987 679999999999999999999999 8 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++++
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 99776
|
| >1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=132.78 Aligned_cols=81 Identities=14% Similarity=0.313 Sum_probs=75.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee--------
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-------- 221 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~-------- 221 (798)
+.++|||+|||+++++++|+++|++||.|.+++++.+ + +|+++|||||+|.+.++|.+|++.| ||..+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~-~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-S-SGTSRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S-SSCEEEEEEEEESCHHHHHHHHHHH--BTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC-C-CCCcceEEEEEECCHHHHHHHHHHh--CCCEEcCCccccC
Confidence 4469999999999999999999999999999999998 5 8999999999999999999999999 99999
Q ss_pred cceeeeeeccccc
Q 003749 222 HGRVLTVKLDDGR 234 (798)
Q Consensus 222 ~g~~~~v~~~~~~ 234 (798)
.|++|.|.+++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998765
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=143.77 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=78.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++||.|.+|++.+| +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAM--DGAVLDGRELRVQ 145 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHS--TTEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 3469999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998764
|
| >3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=152.66 Aligned_cols=84 Identities=21% Similarity=0.336 Sum_probs=78.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccC--cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG--PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..++||||||++++++++|+++|++|| .|++|+|++| +.+|++||||||+|.+.++|.+||+.| |++.|+|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d-~~tg~skGfaFV~f~~~~~a~~Ai~~l--ng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLL--PKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEEC-TTTCCEEEEEEEEESCTTHHHHHHTTS--TTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHc--CCCeECCEEeE
Confidence 345999999999999999999999999 9999999999 889999999999999999999999999 99999999999
Q ss_pred eecccccch
Q 003749 228 VKLDDGRRL 236 (798)
Q Consensus 228 v~~~~~~~~ 236 (798)
|+++++...
T Consensus 144 V~~a~~~~~ 152 (229)
T 3q2s_C 144 VTPVNKQFL 152 (229)
T ss_dssp EEECCHHHH
T ss_pred EEECCCCcc
Confidence 999976643
|
| >2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-17 Score=134.42 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=75.6
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCc---ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGP---IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
.+.++|||||||+++++++|+++|++||. |.+|+++.| +. |+++|||||+|.+.++|.+|+. + |+..++||.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~-~~-g~~~G~afV~F~~~~~a~~Al~-~--~~~~~~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN-RD-GKRRGDALIEMESEQDVQKALE-K--HRMYMGQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCC-TT-STTCSEEEEEBSSHHHHHHHHT-T--TTCCSSSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEEC-CC-CCEeeEEEEEECCHHHHHHHHH-h--CcceeCCeE
Confidence 34569999999999999999999999998 899999998 55 9999999999999999999998 8 999999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|.++.++.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-14 Score=148.70 Aligned_cols=248 Identities=8% Similarity=0.037 Sum_probs=203.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD-MEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
...|..+...+...|++++|+..|+++++.. +.+..+|+.+..+|...|+ +++|+..|+++++... -+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 3456677788899999999999999999985 4577889999999999997 9999999999999753 37899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-IGNEE 453 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~ 453 (798)
+|.+.|++++|+..|+++++.+.. +..+|..+..++.+.|++++|++.|+++++.+ +.+..+|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999998654 88999999999999999999999999999986 4578899999999998 66657
Q ss_pred HH-----HHHHHHHHHCCCCcCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 003749 454 KC-----LIVFERLKECGFSPSIISYGCLINLYTKIG--KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK------ 520 (798)
Q Consensus 454 ~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------ 520 (798)
+| +..|++.++.... +...|+.+..++...| ++++|++.+.++ +. ...+...+..+..+|.+.+
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5888888876433 6778888888888888 688999988887 33 3456778888888888763
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 003749 521 ---DWANVFAVFEDV-MRDGLKPDVVLYNNIIRAF 551 (798)
Q Consensus 521 ---~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~~ 551 (798)
.+++|+.+|+++ .+..+. ....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 258899999888 554332 344565555544
|
| >1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-16 Score=127.99 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=72.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec--ceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH--GRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~--g~~~~ 227 (798)
+.++|||+|||.++++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.| ||..++ |+.|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l--~g~~~~~~g~~l~ 86 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKM--RGFPLGGPDRRLR 86 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHH--TTCBCSSSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-------CCEEEEEECCHHHHHHHHHHH--CCCEeCCCCcEEE
Confidence 3469999999999999999999999999999999865 899999999999999999999 999999 99999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|++++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998774
|
| >2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=129.84 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=73.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||+|||+++++++|+++|++||.| +++.+ .+|+++|||||+|.+.++|.+|+..| |+..|+|+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~--~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 85 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN--QNGKSKGYAFIEFASFEDAKEALNSC--NKREIEGRAIRL 85 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC--SSSCBCSEEEEECSSHHHHHHHHHHT--SSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC--CCCCEeeEEEEEECCHHHHHHHHHHh--CCCEeCCeEEEE
Confidence 345699999999999999999999999987 55554 57999999999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++++..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99988753
|
| >1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=143.12 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=78.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|..|.++.+ +.+|+++|||||+|.+.++|.+|+..| ||..|.|+.|.|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec-CCCCcEeeEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3468999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccchh
Q 003749 230 LDDGRRLK 237 (798)
Q Consensus 230 ~~~~~~~~ 237 (798)
+++++...
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99776533
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-14 Score=138.74 Aligned_cols=197 Identities=13% Similarity=0.043 Sum_probs=117.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...+..+...+.+.|++++|+..|+++++.. +.+...+..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666777777777777777777777664 3456667777777777777777777777777654 235666777777
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 003749 375 GFAKM-----------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMM 443 (798)
Q Consensus 375 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 443 (798)
+|.+. |++++|+..|++..+.+.. +..++..+..+|...|++++|++.|++.++.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77776 6666666666666665332 45566666666666666666666666666654 4555566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 444 DGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
.+|...|++++|+..|++..+.... +...+..+..++...|++++|+..|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666554322 4455555555666666666666555544
|
| >2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-16 Score=129.72 Aligned_cols=74 Identities=27% Similarity=0.507 Sum_probs=70.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+..| ||..++|+.|+|++
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEV--HGKSFANQPLEVVY 99 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHH--TTCEETTEECEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 3599999999999999999999999999999987 689999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98775
|
| >1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-16 Score=131.97 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=72.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+..++|||+|||+++++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V 78 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-------GITAIVEFLEPLEARKAFRHL--AYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-------SSCEEEEESCHHHHHHHHHHH--TTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEeCCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 45679999999999999999999999999999998764 899999999999999999999 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
++++...+
T Consensus 79 ~~a~~~~~ 86 (111)
T 1whx_A 79 EWAPIGVF 86 (111)
T ss_dssp EEEETTTT
T ss_pred EECCCCcc
Confidence 99976643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-14 Score=137.42 Aligned_cols=208 Identities=14% Similarity=-0.003 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..|+++.+.+.. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44455555556666666666666666655543 224555556666666666666666666665554322 4445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
+|.+.+. .. .. .+...|++++|+..|++..+.... +...|..+..+|...|++++
T Consensus 82 ~~~~~~~-------------~~--~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 82 AYVALYR-------------QA--ED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHH-------------TC--SS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhh-------------hh--hh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHH
Confidence 5555400 00 00 000004445555555444443221 34444455555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
|+..|+++.+.+ .+...+..+..+|...|++++|+..|++..+..+. +...+..+..++...|++++|+..|++.
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555443 34444555555555555555555555555544332 4444555555555555555555555443
|
| >2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-16 Score=128.32 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=70.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++||.|. ++++. ++++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-----QGPRRRAFLHYPDSAAAQQAVSCL--QGLRLGTDTLRVA 89 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-----ETTTTEEEEECSSHHHHHHHHHHH--TTCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-----CCCCcEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 345999999999999999999999999997 66664 456999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
|
| >1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-16 Score=129.55 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=74.3
Q ss_pred cccceeecCCCccCchHHHH----HHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
+.++|||||||.++++++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.| ||..++|+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~ 80 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDKP 80 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH----HHHHTTCEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc----CCCcCcEEEEEeCCHHHHHHHHHHh--CCCEECCcE
Confidence 45699999999999999999 9999999999999874 4788999999999999999999999 999999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|++++++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998764
|
| >2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-17 Score=141.13 Aligned_cols=85 Identities=29% Similarity=0.437 Sum_probs=79.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceE--------EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN--------VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
.+.++|||||||.++++++|+++|++||.|.+ |++..+ +.+|+++|||||+|.+.++|.+|++.| ||..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~ 81 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD-RETGKLKGEATVSFDDPPSAKAAIDWF--DGKE 81 (116)
Confidence 45679999999999999999999999999999 899988 788999999999999999999999999 9999
Q ss_pred ecceeeeeecccccch
Q 003749 221 FHGRVLTVKLDDGRRL 236 (798)
Q Consensus 221 ~~g~~~~v~~~~~~~~ 236 (798)
++|+.|+|++++++..
T Consensus 82 ~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 FSGNPIKVSFATRRAD 97 (116)
Confidence 9999999999987753
|
| >2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-16 Score=129.13 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=74.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++|+ .++++.+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTD-RETGSSKGFGFVDFNSEEDAKAAKEAM--EDGEIDGNKVTLD 87 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 446999999999999999999999874 6778887 788999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9988754
|
| >2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=126.14 Aligned_cols=74 Identities=23% Similarity=0.517 Sum_probs=69.2
Q ss_pred ccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.++|||||||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..+ ||..++|+.|+|+
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIEXE--SQEMNFGKKLILE 90 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---------SSEEEEEESSHHHHHHHHHHH--TTSEETTEECEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 35999999998 99999999999999999999883 789999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 997763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-13 Score=134.15 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=156.1
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYS 370 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (798)
+...+..+...|...|++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566677777777888888888888877743 55677777777777 788888888888777764 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 003749 371 IIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMM 442 (798)
Q Consensus 371 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 442 (798)
.+...|.. .+++++|+..|++..+.+ +..++..+..+|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777888888887777663 56677777777777 777777777777777754 45666666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 443 MDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (798)
Q Consensus 443 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (798)
...|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777766653 45566666666666 677777777777666653 2455555666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 003749 515 GFLK----LKDWANVFAVFEDVMRDG 536 (798)
Q Consensus 515 ~~~~----~~~~~~a~~~~~~~~~~g 536 (798)
+|.+ .+++++|+..|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666665543
|
| >3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-16 Score=132.35 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=73.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+++|||||||+++++++|+++|++||.|.+|++..+ ++++|||||+|.+.++|.+|+..| ||..++|+.|+|.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT----PETRGTAYVVYEDIFDAKNAVDHL--SGFNVSNRYLVVLY 81 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS----TTTTTCEEEEESSHHHHHHHHHHH--TTCBSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEEE
Confidence 459999999999999999999999999999999876 566999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98764
|
| >1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-16 Score=129.03 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=73.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceE-EEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++|||||||+++++++|+++|++||.|.+ |+|+.+ .+|+++|||||+|.+.++|.+|+.. |+..++||.|+|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~--~~g~~~G~afV~F~~~~~a~~A~~~---~~~~~~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD--FQGRSTGEAFVQFASQEIAEKALKK---HKERIGHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC--SSSCBCSEEEEEESSHHHHHHHHTT---TTCCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC--CCCCcceEEEEEECCHHHHHHHHHh---CcchhCCcEEEE
Confidence 3469999999999999999999999999997 888876 6899999999999999999999974 899999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
..+....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 8886554
|
| >1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-16 Score=129.17 Aligned_cols=79 Identities=18% Similarity=0.398 Sum_probs=74.3
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
....++|||||||.++++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|+..| ||..++|+.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSV--NGTTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHc--CCCEECCcEEE
Confidence 345679999999999999999999999999999999987 899999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++++.
T Consensus 93 v~~a~~~~ 100 (109)
T 1x4g_A 93 CYWGKESP 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99998875
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-13 Score=132.68 Aligned_cols=224 Identities=12% Similarity=-0.040 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYG 405 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (798)
+..++..+...|...|++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677778888888888888888888888743 56778888888888 888888888888887764 677777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 003749 406 NIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECGFSPSIISYGCL 477 (798)
Q Consensus 406 ~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 477 (798)
.+..+|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888887764 56777778888877 788888888888877764 56667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 478 INLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (798)
Q Consensus 478 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 549 (798)
..+|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 778888888888777653 45666677777777 777777777777777653 2556666777
Q ss_pred HHHc----CCChHHHHHHHHHHHHCC
Q 003749 550 AFCG----MGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 550 ~~~~----~g~~~~A~~~~~~~~~~~ 571 (798)
+|.+ .+++++|+..|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7776 677777777777766654
|
| >2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-16 Score=134.41 Aligned_cols=83 Identities=14% Similarity=0.310 Sum_probs=73.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|..+.+..+ ..+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR-MMTGRMRGQAFITFPNKEIAWQALHLV--NGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEE-EECSSSCSEEEEECSSHHHHHHHHHHS--TTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEE-cCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 3469999999999999999999999999965544333 337889999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpx_A 101 FGKNKK 106 (115)
T ss_dssp ECCCCS
T ss_pred EccCCC
Confidence 998775
|
| >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=127.55 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=69.4
Q ss_pred cccceee--cCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee-----c
Q 003749 150 QEGKIFV--GNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-----H 222 (798)
Q Consensus 150 ~~~~~~v--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~-----~ 222 (798)
+..+||| |||++++++++|+++|++||.|.+|.+..+ ||||||+|++.++|.+|++.| ||..+ .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-------rgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHHHHHT--TTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCEEccccCC
Confidence 4568999 889999999999999999999999988765 899999999999999999999 99998 7
Q ss_pred ceeeeeeccccc
Q 003749 223 GRVLTVKLDDGR 234 (798)
Q Consensus 223 g~~~~v~~~~~~ 234 (798)
|++|.|.+++..
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 999999998654
|
| >1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-16 Score=127.37 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=72.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||.++++++|+++|++||.|..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 85 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSL 85 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE------EETTEEEEEEEEEESSHHHHHHHHHHT--TEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe------CCCCCcceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEE
Confidence 345699999999999999999999999998776 246888999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
++++++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9998775
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-14 Score=139.89 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVG 374 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~ 374 (798)
..+..+...+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|+..|+++++....+ ...+|..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556677778888888888888888763 3345577777778888888888888888887732111 1334777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.|.+.|++++|++.|+++.+.... +..++..+..+|...|++++|.+.|++.++.. +.+..+|..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887776433 56677777777888888888888887777653 4456666666633334457777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHH
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGK---VSKALEVSKVMKSSG-IKHN------MKTYSMLINGFLKLKDWAN 524 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~ 524 (798)
|+..|+++.+.... +...+..+..++...|+ +++|...++++.+.. -.++ ...|..+...|.+.|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777777765322 45666666677776666 666776666665431 0011 1355556666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Q 003749 525 VFAVFEDVMRDGLKPDVVLYNNI 547 (798)
Q Consensus 525 a~~~~~~~~~~g~~~~~~~~~~l 547 (798)
|...|+++.+..+. +...+..+
T Consensus 240 A~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 240 ADAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHhcCcc-HHHHHHHh
Confidence 66666666665433 44444333
|
| >1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=126.99 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=71.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc-----ee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG-----RV 225 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g-----~~ 225 (798)
.++|||+|||+++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|.+|++.| ||..|+| +.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETAY 84 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHS--SSEEEECTTSCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHH--CcCCccCCcCcceE
Confidence 459999999999999999999999999999999875 89999999999999999999 9999999 99
Q ss_pred eeeecccccch
Q 003749 226 LTVKLDDGRRL 236 (798)
Q Consensus 226 ~~v~~~~~~~~ 236 (798)
|+|++++++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987653
|
| >2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-16 Score=131.86 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=71.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcce--EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
+.++|||||||+++++++|+++|++| .|. +|+|+.| +. |+++|||||+|.+.++|.+|++. ++..|+||.|+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d-~~-GrsrGfaFV~F~~~e~A~~Al~~---~~~~l~gR~I~ 114 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD-PE-GKITGEAFVQFASQELAEKALGK---HKERIGHRYIE 114 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC-SS-SSSCSEEEEEESSTTHHHHHHTT---TTCCBTTBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC-CC-CCCceEEEEEECCHHHHHHHHHH---CCCEECCEEEE
Confidence 45689999999999999999999999 566 8999998 55 99999999999999999999974 67999999999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=8.1e-14 Score=145.37 Aligned_cols=229 Identities=8% Similarity=0.078 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 472 ISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKD-WANVFAVFEDVMRDGLKPDVVLYNNIIRA 550 (798)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 550 (798)
..|..+..++.+.|++++|+..++++++.+ +.+...|+.+..+|...|+ +++|+..|+++++.... +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 445555666666666666666666666543 2345556666666666664 66666666666665444 55556666666
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHH
Q 003749 551 FCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE-KRQMEK 629 (798)
Q Consensus 551 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~ 629 (798)
+...|++++|+..|++++..... +...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 66666666666666666555433 4455555555555556666666666555554433 45555555555555 333344
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------
Q 003749 630 A-----IEILDEMTLAGISPNEHTYTTIMHGYASLG--DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG------- 695 (798)
Q Consensus 630 A-----~~~~~~m~~~~~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 695 (798)
| +..|++.++.. +-+...|..+..++...| ++++|++.+.++ +... .+...+..|+.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccch
Confidence 4 34455544432 223445555555555544 345555555554 2221 23444555555555442
Q ss_pred --ChHHHHHHHHHH
Q 003749 696 --RMQSALAVTKEM 707 (798)
Q Consensus 696 --~~~~A~~~~~~~ 707 (798)
.+++|+.+++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 134555555555
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-11 Score=137.67 Aligned_cols=233 Identities=9% Similarity=-0.025 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH-HHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 523 ANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAI-HIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDM 601 (798)
Q Consensus 523 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 601 (798)
+.+..+|++.+..-.. +...|...+..+...|+.++|. .+|++...... .+...|...+....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4456778888776443 7888888888888889988996 99999887532 3555677778888889999999999998
Q ss_pred HHHcC---------CCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 003749 602 MRRSG---------CIP------------TVHTFNALILGLVEKRQMEKAIEILDEMTLA-GISPNEHTYTTIMHGYASL 659 (798)
Q Consensus 602 ~~~~~---------~~p------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~t~~~li~~~~~~ 659 (798)
+++.. ..| ...+|...+....+.|..+.|..+|.++.+. . ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 87631 012 1336777777777889999999999998875 2 22334444433333444
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHH
Q 003749 660 -GDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIP--RNTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 660 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
++.+.|.++|+..++.- .-+...+...+......|+.+.|..+|++.+..... .....|..++..-.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999998873 336777788888888899999999999999876421 13457888888888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 737 DLMQQMKQEGVQPDVHTYTSFINAC 761 (798)
Q Consensus 737 ~~~~~m~~~g~~pd~~~~~~l~~~~ 761 (798)
++.++|.+. .|+......+++-|
T Consensus 562 ~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 562 TLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999986 34444444454444
|
| >2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-16 Score=135.31 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=74.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+|||+++++++|+++|++|| |.+|+|+.| +. |+++|||||+|++.++|.+|+ .+ |+..|+||.|+|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d-~~-g~srGfaFV~F~~~e~A~~Al-~~--~g~~l~gR~i~V 117 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG-PD-GRVTGEADVEFATHEEAVAAM-SK--DRANMQHRYIEL 117 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS-SS-SCSSCCCEEECSHHHHHHHHT-TC--CSCSSSSCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC-CC-CCCceEEEEEeCCHHHHHHHH-hh--CCCEECCEEEEE
Confidence 3456999999999999999999999999 779999998 54 999999999999999999999 67 999999999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
..+..+..
T Consensus 118 ~~a~~~~~ 125 (139)
T 2hgn_A 118 FLNSTTGA 125 (139)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 99877653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-12 Score=139.18 Aligned_cols=439 Identities=8% Similarity=0.019 Sum_probs=309.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
.+-+..|.+.+..||. |...|..++..+.+.++++.++.+|+++... ++.+...|...+..-.+
T Consensus 49 ~d~i~~lE~~l~~np~---------------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~ 112 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT---------------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFD 112 (679)
T ss_dssp SCHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHh
Confidence 3457778888899997 7788899999999999999999999999987 46678889999999999
Q ss_pred cCC---hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-cCC-CC-ChhhHHHHH
Q 003749 344 GRD---MEEALSCVRKMKEEG-IEMSLVTYSIIVGGFAKMGNA--------EAADHWFEEAKE-RHA-TL-NAIIYGNII 408 (798)
Q Consensus 344 ~g~---~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~ 408 (798)
.++ ++.+.++|++.+... ..+++..|...+....+.++. +.+.++|+.++. .|. .+ ....|...+
T Consensus 113 ~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL 192 (679)
T ss_dssp C--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred hCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 999 999999999999863 137888999888877666553 345588888765 344 33 345777666
Q ss_pred HHHH---------hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC-
Q 003749 409 YAQC---------QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTI-------------IGNEEKCLIVFERLKEC- 465 (798)
Q Consensus 409 ~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~- 465 (798)
.... ..++++.+..+|++++..-......+|......-.. ..+++.|..++.++...
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5543 244577888999998853211112333222211111 12334455555554321
Q ss_pred -CCC---------------c-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 466 -GFS---------------P-----S---IISYGCLINLYTKIG-------KVSKALEVSKVMKSSGIKHNMKTYSMLIN 514 (798)
Q Consensus 466 -~~~---------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 514 (798)
++. | + ...|...+..--..+ ..+.+..+|++++.. +.-+...|...+.
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~ 351 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMAN 351 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 111 0 0 245656665443332 134456778888775 3457788888888
Q ss_pred HHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC---------CCCC---------
Q 003749 515 GFLKLKDWANVF-AVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER---------HRPT--------- 575 (798)
Q Consensus 515 ~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~--------- 575 (798)
.+...|+.++|. .+|+.....-+ .+...|...+....+.|++++|..+|+++.... ..|+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 888889999997 99999987533 367778888999999999999999999987641 0121
Q ss_pred ---cccHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003749 576 ---SRTFMPIIHGFARAGEMKRALEIFDMMRRS-GCIPTVHTFNALILGLVEK-RQMEKAIEILDEMTLAGISPNEHTYT 650 (798)
Q Consensus 576 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~t~~ 650 (798)
...|...+....+.|..+.|..+|.++++. .. .....|...+..-.+. ++.+.|.++|+..++. ..-+...|.
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~ 508 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHH
Confidence 236888888888899999999999999875 22 1233443333333444 4589999999998876 345666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003749 651 TIMHGYASLGDTGKAFEYFTKLRNEGLEL--DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (798)
Q Consensus 651 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (798)
..++.....|+.+.|..+|++++.....+ ....|..++.--.+.|+.+.+..+.+++.+.. |+......+++
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ 582 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 88888888999999999999999875422 45688888888889999999999999999764 44333333333
|
| >2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-16 Score=131.33 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=73.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcc----eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPI----KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
.+.++|||+|||+++|+++|+++|++||.| .+|+|+.| + +|+++|||||+|.+.++|.+|++. |+..|+||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~-~gr~~G~aFV~F~~~~~A~~Al~~---~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-P-DGRPTGDAFVLFACEEYAQNALRK---HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-T-TSCEEEEEEECCSSHHHHHHHHTT---TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-C-CCCEeeEEEEEECCHHHHHHHHHh---CCCeeCCe
Confidence 456799999999999999999999999875 69999987 4 899999999999999999999973 89999999
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
.|.|..+..+.
T Consensus 96 ~i~V~~a~~~e 106 (123)
T 2dha_A 96 YIELFRSTAAE 106 (123)
T ss_dssp EECCEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99998886553
|
| >2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=123.07 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=71.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.+ |+..++|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNL--HHYKLHGVNINVE 75 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHh--cCCccCCcEEEEE
Confidence 44699999999999999999999999999999987 589999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987753
|
| >3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=127.61 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=70.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcce-EEEEeCChhHHHHHHHhcccCCeeecc--eeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF-GFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~v 228 (798)
-+||||||++.+|+++|+++|++||.|.+|++..+ ++|| |||+|++.++|.+|++.| ||..|.| +.|+|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~------~~gfqAFVef~~~~~A~~Ai~~L--nG~~i~g~~~~LrI 100 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK------NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRI 100 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE------TTEEEEEEEESCHHHHHHHHHHH--TTCEEETTEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC------CCCcEEEEEECCHHHHHHHHHHc--CCCeecCCCcEEEE
Confidence 37899999999999999999999999999998764 2687 999999999999999999 9999988 99999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++++..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998774
|
| >2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-16 Score=127.71 Aligned_cols=80 Identities=21% Similarity=0.476 Sum_probs=74.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++||.|.++++..+ + +|+++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-R-TGVSKGYGFVSFYNDVDVQKIVE----SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-T-TSCEEEEEEEEESSCCCHHHHTT----CCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC-C-CCCccceEEEEECCHHHHHHHHh----CCCeECCEEEEEE
Confidence 4469999999999999999999999999999999998 5 89999999999999999999986 7999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.++.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 886553
|
| >2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=122.17 Aligned_cols=75 Identities=23% Similarity=0.472 Sum_probs=70.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.++++. ++||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---------KDYAFVHMERAEDAVEAIRGL--DNTEFQGKRMHVQ 77 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHh--CCCeeCCcEEEEE
Confidence 45699999999999999999999999999999997 359999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998775
|
| >2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=124.10 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=70.6
Q ss_pred ccccceeecCCCccCchHHHHHHhccc--CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQF--GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
.+.++|||||||+++++++|+++|++| |.|.++++. +|||||+|.+.++|.+|+..| ||..|+|+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l 81 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKAL--NGKVLDGSPI 81 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHH--SSEEETTEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHh--CCCEeCCcEE
Confidence 345699999999999999999999999 899988764 679999999999999999999 9999999999
Q ss_pred eeecccccch
Q 003749 227 TVKLDDGRRL 236 (798)
Q Consensus 227 ~v~~~~~~~~ 236 (798)
+|++++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999988753
|
| >2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=120.27 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=68.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||.++++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| .||..++|++|+|+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l-~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-------QQCAFIQFATRQAAEVAAEKS-FNKLIVNGRRLNVK 82 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHTT-TTTCEETTEECCEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-------CCEEEEEECCHHHHHHHHHHh-cCCeeECCCEEEEE
Confidence 3469999999999999999999999999999999976 899999999999999999853 27899999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
|
| >2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-16 Score=127.98 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=71.8
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN------PPGFAFVEFEDPRDAEDAVRGL--DGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS------SSSEEEEECSSHHHHHHHHHHH--HHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCEEEEEECCHHHHHHHHHHH--CCCeECCcEEEEEEc
Confidence 48999999999999999999999999999999875 6899999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
+++.
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8765
|
| >1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=122.41 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=69.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||+ ++++++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|+..| ||..++|+.|+|+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-------~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-------PRNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVN 82 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHT--TTEEETTEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-------CCCEEEEEECCHHHHHHHHHHh--CCCeECCeEEEEE
Confidence 4569999996 899999999999999999999954 3899999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 83 ~a~~~~ 88 (97)
T 1x5p_A 83 IARKQP 88 (97)
T ss_dssp CCSSCC
T ss_pred ECCCCC
Confidence 998775
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-13 Score=135.62 Aligned_cols=231 Identities=10% Similarity=0.019 Sum_probs=103.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHh
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDGYTI 448 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~~~ 448 (798)
..+..+.+.|++++|+..|+++.+.... +..++..+..+|...|++++|++.++++.+....+ ...+|..+...|..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443221 33344444444444444444444444444421000 11224444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 449 IGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAV 528 (798)
Q Consensus 449 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 528 (798)
.|++++|+..|++..+.... +..+|..+..+|...|++++|+..|+++.+.. +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554443221 33455555555555555555555555554432 22344444444222223355555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHCCC-CCC------cccHHHHHHHHHhcCCHHHHHHH
Q 003749 529 FEDVMRDGLKPDVVLYNNIIRAFCGMGN---MDRAIHIVKEMQKERH-RPT------SRTFMPIIHGFARAGEMKRALEI 598 (798)
Q Consensus 529 ~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~li~~~~~~~~~~~a~~~ 598 (798)
|+++.+.... +...+..+..++...|+ +++|...|+++.+... .++ ...+..+...|.+.|++++|...
T Consensus 165 ~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555554322 34444445555554454 4445555554443210 011 12344444555555555555555
Q ss_pred HHHHHHc
Q 003749 599 FDMMRRS 605 (798)
Q Consensus 599 ~~~~~~~ 605 (798)
|+++.+.
T Consensus 244 ~~~al~~ 250 (272)
T 3u4t_A 244 WKNILAL 250 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555544
|
| >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=124.52 Aligned_cols=78 Identities=22% Similarity=0.479 Sum_probs=70.9
Q ss_pred ccccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.+.++|||||||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..| ||..+.|+.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIECE--SQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHH--TCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHc--CCCeeCCcEEE
Confidence 4567999999999 99999999999999999999984 689999999999999999999 99999999999
Q ss_pred eecccccchh
Q 003749 228 VKLDDGRRLK 237 (798)
Q Consensus 228 v~~~~~~~~~ 237 (798)
|++++++...
T Consensus 77 V~~a~~~~~~ 86 (96)
T 2kvi_A 77 LEVSSSNARP 86 (96)
T ss_dssp EEEEECCCC-
T ss_pred EEEcCcCCCC
Confidence 9999776533
|
| >2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=117.00 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=64.0
Q ss_pred ceeecCCCccCchHH----HHHHhccc-CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 153 KIFVGNLPNWIKKHL----VMEFFRQF-GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~----l~~~f~~~-g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.|||+|||+.+++++ |+++|++| |.|.+| +| |||||+|.+.++|.+|++.| ||..+.||+|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l--~G~~l~gr~i~ 77 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRM--ENEDVFGNRII 77 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHH--TTCCSSSSCCE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHh--cCCccCCceEE
Confidence 399999999999987 56899999 599988 23 99999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+|+.+.
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99998774
|
| >2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=124.73 Aligned_cols=76 Identities=21% Similarity=0.437 Sum_probs=70.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||+++++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.| |+..|+|+.|+|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKAMEEM--NGKDLEGENIEIV 78 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHH--CCCccCCCEEEEE
Confidence 44699999999999999999999999999999986 469999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9987753
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=143.97 Aligned_cols=82 Identities=17% Similarity=0.377 Sum_probs=77.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++|+++|+++|++||.|.+|+|++| +.+|+++|||||+|.+.++|.+|++.+ |+..+.|+.+++.++
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~~G~afV~F~~~~~A~~Ai~~~--~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVRIMWS 92 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecc-cCCCCccccccceeCCHHHHHHHHHHh--hhhhcCCcccccccc
Confidence 48999999999999999999999999999999999 889999999999999999999999999 999999999999998
Q ss_pred cccch
Q 003749 232 DGRRL 236 (798)
Q Consensus 232 ~~~~~ 236 (798)
.....
T Consensus 93 ~~~~~ 97 (213)
T 4f02_A 93 QRDPS 97 (213)
T ss_dssp CCCTH
T ss_pred ccccc
Confidence 76643
|
| >2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=138.20 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=77.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||+++++++|+++|++||.|.+|.|..+ + +|+++|||||+|.+.++|.+|++.+ ||..|+|+.|+|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d-~-~g~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYD-R-SGRSLGTADVHFERRADALKAMKQY--KGVPLDGRPMDIQ 162 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCC-T-TSSCSCCEEEEESCHHHHHHHHHHS--TTCBCSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCEeeEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3469999999999999999999999999999999998 5 8999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987654
|
| >1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=120.10 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=70.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.| ||..++|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMF--HQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHh--CCCeECCcEEEEE
Confidence 45699999999999999999999999 99999885 34999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++....
T Consensus 74 ~a~~~~ 79 (88)
T 1wg1_A 74 LQPTDA 79 (88)
T ss_dssp ECCCCC
T ss_pred EcCCCc
Confidence 986653
|
| >1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=131.92 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=70.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc--eeeeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~v~ 229 (798)
.+||||||++.+++++|+++|++||.|++|++..+ +++|||||+|++.++|.+|++.| ||..|.| +.|+|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~L--nG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRID 119 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHS--TTBCSSSSCSCEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHh--CCCEecCCCcEEEEE
Confidence 37999999999999999999999999999999754 24799999999999999999999 9999965 999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998874
|
| >2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=125.65 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=68.2
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcce-EEEEeCChhHHHHHHHhcccCCeeecc--eeeeee
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF-GFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTVK 229 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~v~ 229 (798)
.||||||++.+++++|+++|++||.|++|++... .|| |||+|++.++|..|++.| ||..|.| +.|+|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~L--nG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-------NGIQAMVEFESVLCAQKAKAAL--NGADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-------SSEEEEEEESSHHHHHHHHHHH--TTCCCBTTBSEEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHh--CCCEecCCCeEEEEE
Confidence 6899999999999999999999999999999752 386 999999999999999999 9999987 699999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998875
|
| >2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=120.84 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=70.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQL--NGKEVKGKRINVE 76 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHh--CCCEECCcEEEEE
Confidence 45699999999999999999999999999999997 459999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998764
|
| >3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=119.60 Aligned_cols=74 Identities=22% Similarity=0.422 Sum_probs=62.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee--ecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE--FHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~--~~g~~~~ 227 (798)
+..+|||||||+++++++|+++|++||.|.+|+++++ +||||||+|++.++|.+ + ++.. ++|+.|.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~------srGfaFV~F~~~~~A~~----~--~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP------FRAFAFVTFADDKVAQS----L--CGEDLIIKGISVH 77 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS------CCSEEEEEESCHHHHHH----H--TTCEEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC------CCCEEEEEECCHHHHHH----H--cCCCcccCCEEEE
Confidence 3459999999999999999999999999999999864 69999999999999884 3 4444 5699999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998764
|
| >2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=122.46 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=73.9
Q ss_pred ccccceeecCCCc-----cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 149 RQEGKIFVGNLPN-----WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 149 ~~~~~~~v~nl~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.+++.|+|+|+.. +-++++|+++|++||.|.+|+|.+++..+|+++|||||+|.+.++|.+|+..| ||..++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l--nG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL--NGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH--TTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH--CCCEECC
Confidence 3456999999952 23678999999999999999999984345789999999999999999999999 9999999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
|.|+|.++....
T Consensus 84 r~i~v~~a~~~~ 95 (105)
T 2pe8_A 84 RVVKACFYNLDK 95 (105)
T ss_dssp EECEEEECCHHH
T ss_pred cEEEEEEcCHHH
Confidence 999999997654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-13 Score=131.55 Aligned_cols=201 Identities=12% Similarity=0.015 Sum_probs=144.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...|..+...|...|++++|+.+|+++.+.. ..+..++..+...|...|++++|+++|+++.+.. +.+..++..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556777788888888888888888888764 4467778888888888888888888888887764 3367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHAT-LNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
|...|++++|+++|+++...+.. .+...+..++.+|...|++++|.+.++++.+.. +.+..++..++..|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888762122 245566777777777778888877777777654 3345666677777777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
|+.+|+++.+... .+...+..+..++...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777665432 24556666666677777777777777766654
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=134.51 Aligned_cols=78 Identities=29% Similarity=0.574 Sum_probs=73.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++++++|+++|++||.|.+|++.++ ++|||||+|.+.++|.+|+..| ||..++|++|+|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN------PPGFAFVEFEDPRDAADAVREL--DGRTLCGCRVRVE 143 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS------SCSEEEEEESSHHHHHHHHHHH--SSSCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 4569999999999999999999999999999999875 5899999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
|
| >2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-15 Score=122.73 Aligned_cols=78 Identities=14% Similarity=0.263 Sum_probs=70.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEE-EecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVI-LIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++|||||||+++++++|+++|++||.|.+++ ++.+ +.+| .|||+|.+.++|.+|+..| ||..++|+.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-~~~~----~afV~f~~~~~a~~Ai~~l--~g~~~~g~~l~V 86 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-SETA----VVNVTYSSKDQARQALDKL--NGFQLENFTLKV 86 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-SSSE----EEEEEESSHHHHHHHHHHH--TTCBCSSCBCEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCC----EEEEEECCHHHHHHHHHHh--CCCEECCcEEEE
Confidence 346999999999999999999999999999995 7776 4443 4999999999999999999 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
+++.++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999876
|
| >3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-16 Score=136.90 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=72.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEE-----ecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVIL-----IKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~-----~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.++++|||||||+++++++|+++|++||.|..+.+ ++. ..+|+++|||||+|.+.++|.+|+..| ||..|+|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEA--NGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHH--TTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHh--CCCEeCC
Confidence 34569999999999999999999999999987411 111 246899999999999999999999999 9999999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
+.|+|+++++..
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997754
|
| >2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-15 Score=120.71 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=68.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.+| +.+ +.+|+ ||||+|.+.++|.+|+. | ||..|+|+.|+|++
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~-~~~g~---~afV~f~~~~~a~~ai~-l--~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMD-KDKGV---FAIVEMGDVGAREAVLS-Q--SQHSLGGHRLRVRP 78 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EEC-SSSCC---EEEEEESSHHHHHHHHT-C--SCCEETTEECCCBC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEc-CCCCc---EEEEEECCHHHHHHHHh-c--CCeEECCEEEEEEE
Confidence 4599999999999999999999999999987 445 55555 99999999999999999 8 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+.++.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 87664
|
| >2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-15 Score=121.96 Aligned_cols=76 Identities=22% Similarity=0.478 Sum_probs=68.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc-ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC-eeecceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG-VEFHGRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~-~~~~g~~~~ 227 (798)
+.++|||||||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.| || ..++|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--------~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~ 76 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--------KSGYAFVDYPDQNWAIRAIETL--SGKVELHGKIME 76 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--------ETTEEEECCSCHHHHHHHHHHH--TTTCEETTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--------CCCEEEEEECCHHHHHHHHHHc--cCCeeECCEEEE
Confidence 3469999999999999999999999999 6666553 2899999999999999999999 99 999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|++++++.
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998775
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-14 Score=139.66 Aligned_cols=121 Identities=12% Similarity=-0.099 Sum_probs=65.5
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 308 RRGDMHRARQTFENMRARGIE---PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEA 384 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 384 (798)
..|++++|+..|+++.+.... .+..++..+...|...|++++|+..|+++++.. +.+..+|..++..|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345566666666666654211 123445555566666666666666666665543 2245555566666666666666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
|++.|+++...... +..++..++.+|.+.|++++|.+.|+++.+.
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666655554222 3445555555555555555555555555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-13 Score=134.45 Aligned_cols=201 Identities=14% Similarity=0.052 Sum_probs=135.1
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
....|..+...+...|++++|+.+|+++.+.. ..+..++..+...|.+.|++++|+..|+++.+.. +.+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45567778888888899999999999888764 4467788888888888888999988888888764 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.|...|++++|++.|+++.+... .+..++..++.+|.+.|++++|.+.++++.+.. +.+..++..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888877643 356677777778888888888888888877764 3456667777777777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 455 CLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
|+..|+++.+... .+..++..+..+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777766532 24566666777777777777777777776664
|
| >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=122.21 Aligned_cols=74 Identities=23% Similarity=0.516 Sum_probs=69.3
Q ss_pred ccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
.++|||||||++ +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGE--NGRVLAGQTLDIN 95 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHH--TTCEETTEECCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHc--CCCEECCeEEEEE
Confidence 469999999999 999999999999999999998 2799999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-13 Score=130.27 Aligned_cols=208 Identities=16% Similarity=0.056 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 541 VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILG 620 (798)
Q Consensus 541 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 620 (798)
...+..+...+...|++++|+..|+++...... +...+..+...|.+.|++++|+.+|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 345666666777777777777777777665432 4566677777777888888888888877766433 66777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISP-NEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 699 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 699 (798)
|...|++++|+++|+++.+.+..+ +...+..+..++...|++++|.++|+++.+.... +...+..+..+|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887632233 4567778888888889999999998888877543 67788888888999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 700 ALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (798)
Q Consensus 700 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (798)
|..+++++.+.. +.+...+..++..+.+.|++++|.++++++.+. .|+...+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 999999888765 567778888888888999999999999998875 3444333
|
| >2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-15 Score=126.03 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=67.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCC---CCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNF---EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
..++|||||||+++++++|+++|++||.|. +.++.+ +.+ |+++|||||+|++.++|.+|++.| + .++|+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~-~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~--~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHK-AESKSYFPPKGYAFLLFQEESSVQALIDAC--L--EEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTS-SSSCCCSCTTSEEEECCSSHHHHHHHHHHS--E--EETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeec-CCCCCCCCcccEEEEEECCHHHHHHHHHhh--h--hcCCcEE
Confidence 456999999999999999999999999999 888887 555 899999999999999999999987 4 4788888
Q ss_pred eeeccc
Q 003749 227 TVKLDD 232 (798)
Q Consensus 227 ~v~~~~ 232 (798)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 776553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=126.71 Aligned_cols=203 Identities=10% Similarity=-0.009 Sum_probs=141.2
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|..+...|...|++++|+++|+++.+.. ..+...+..+...|...|++++|++.|+++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556777778888888888888888887763 3456677778888888888888888888887763 336677777888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 003749 375 GFAKM-GNAEAADHWFEEAKERHATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNE 452 (798)
Q Consensus 375 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (798)
.|... |++++|+..|+++.+....+ +..++..++.+|...|++++|.+.++++.+.. +.+...+..++.+|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888877621112 35566777777777777777777777777653 33466666777777777777
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 453 EKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 453 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
++|..+|+++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777666432134555666666666777777777766666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.7e-14 Score=139.69 Aligned_cols=249 Identities=10% Similarity=-0.028 Sum_probs=186.9
Q ss_pred HHccCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 003749 341 YAVGRDMEEALSCVRKMKEEGI---EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNM 417 (798)
Q Consensus 341 ~~~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 417 (798)
+...|++++|+..|+++++... +.+..+|..++..|...|++++|+..|+++...+.. +..++..++.+|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3456888999999999887532 124677888899999999999999999999887543 778888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003749 418 ERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVM 497 (798)
Q Consensus 418 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (798)
++|.+.|+++++.. +.+..++..+..+|...|++++|+..|+++.+.. |+......++..+...|++++|+..+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998874 4467888889999999999999999999988753 34444445555667779999999999877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 003749 498 KSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP---DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574 (798)
Q Consensus 498 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 574 (798)
.... ..+...+. ++..+...++.++|+..++...+..... +..++..+...|...|++++|...|+++.... |
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7653 23333443 6667777888888998888876542211 24678888899999999999999999988764 2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHH
Q 003749 575 TSRTFMPIIHGFARAGEMKRALEIF 599 (798)
Q Consensus 575 ~~~~~~~li~~~~~~~~~~~a~~~~ 599 (798)
+ .+.....++.+.|++++|++.+
T Consensus 247 ~--~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 H--NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--TCHHHHHHHHHHHHHHHC----
T ss_pred h--hHHHHHHHHHHHHHHHhhHHHH
Confidence 2 2334455677888888888776
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=133.34 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...|..+...+...|++++|+.+|+++++.. +.+..++..++..|.+.|++++|++.|+++..... .+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 44566777777888888888888888887753 33677788888888888888888888888877643 36677777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
+|...|++++|.+.++++.+.. +.+..++..++..|...|++++|+.+++++.+... .+...+..+..+|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877764 34566777777777777777777777777776532 256667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (798)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (798)
|+..++++.+.. ..+..++..+..+|...|++++|...|+++.+...
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 777777776653 23456666677777777777777777777666543
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-14 Score=142.35 Aligned_cols=76 Identities=22% Similarity=0.421 Sum_probs=70.7
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~ 227 (798)
...++|||+||+.++++++|+++|++||.|.+|+++.+ + +|||||+|.+.++|.+|++.| ||..++ |+.|+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-~-----~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~ 276 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG-R-----HDIAFVEFDNEVQAGAARDAL--QGFKITQNNAMK 276 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC-C-----CcEEEEEeCCHHHHHHHHHHc--CCcEeCCCCEEE
Confidence 34568999999999999999999999999999999976 2 599999999999999999999 999999 99999
Q ss_pred eeccc
Q 003749 228 VKLDD 232 (798)
Q Consensus 228 v~~~~ 232 (798)
|.|++
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 99985
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-12 Score=123.74 Aligned_cols=203 Identities=11% Similarity=0.000 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...|...|++++|+++|+++.+.. +.+..+|..++..|...|++++|++.|+++..... .+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 44566777777777888888888887777753 33566777777777778888888888777776533 25666777777
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 003749 410 AQCQT-RNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (798)
Q Consensus 410 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (798)
+|... |++++|.+.++++.+.+..+ +..++..+..+|...|++++|+..|+++.+.... +...+..+..+|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 77777 77777777777777622122 2455666667777777777777777776664322 455666666666667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 488 SKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 488 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
++|..+++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777776666665432134555555556666666666666666666543
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=151.61 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=79.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++||||||++++|+++|+++|++||.|+.|.|+.+ +.+|+++|||||+|.+.++|.+||..| ||+.|+|+.|.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Ai~~l--ng~~i~gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS-KRSGKPRGYAFIEYEHERDMHSAYKHA--DGKKIDGRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc-CCCCCccceEEEeeccHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4569999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987643
|
| >2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-15 Score=117.34 Aligned_cols=71 Identities=30% Similarity=0.606 Sum_probs=66.4
Q ss_pred cccceeecCCCccCchHHHHHHhccc----C-------cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQF----G-------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 218 (798)
+.++|||||||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .| ||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~a~~A~-~l--~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AF--DG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSEEEEEESSHHHHHHHG-GG--TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcEEEEEcCCHHHHHHHH-hc--CC
Confidence 45699999999999999999999999 8 8999999876 899999999999999999 88 99
Q ss_pred eeecceeeeeec
Q 003749 219 VEFHGRVLTVKL 230 (798)
Q Consensus 219 ~~~~g~~~~v~~ 230 (798)
..++|+.|+|+.
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999863
|
| >3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-15 Score=123.71 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=66.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee-----
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV----- 225 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~----- 225 (798)
.++|||+|||+++++++|+++|++||.|.+|.|+.+ |||||+|.+.++|.+|++.| ||..|+|+.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETAY 85 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHH--TTCBCCCTTSCCCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--------CEEEEEECCHHHHHHHHHHh--CCCEECCcEeeeEE
Confidence 469999999999999999999999999999999864 89999999999999999999 999999999
Q ss_pred eeeeccccc
Q 003749 226 LTVKLDDGR 234 (798)
Q Consensus 226 ~~v~~~~~~ 234 (798)
++|..+.++
T Consensus 86 i~v~~~~~~ 94 (115)
T 3beg_B 86 IRVKVDGPR 94 (115)
T ss_dssp CEEEECC--
T ss_pred EEeccCCCC
Confidence 677766554
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-15 Score=134.41 Aligned_cols=83 Identities=19% Similarity=0.410 Sum_probs=78.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
++++|||||||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD-YKTGYSYGYAFVDFTSEMDSQRAIKVL--NGITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEe-CCCCccceEEEEEECCHHHHHHHHHhc--CCCEeCCcEEEEE
Confidence 3569999999999999999999999999999999998 789999999999999999999999989 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++++..
T Consensus 79 ~~~~~~ 84 (168)
T 1b7f_A 79 YARPGG 84 (168)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 997664
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=133.32 Aligned_cols=82 Identities=20% Similarity=0.450 Sum_probs=77.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.+++++++ +.+|+++|||||+|.+.++|.+|++.+ ||..+.|+.|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTL--NGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCCcceeEEEEEECCHHHHHHHHHHc--CCCccCCceEEEEe
Confidence 469999999999999999999999999999999998 779999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+.+..
T Consensus 79 ~~~~~ 83 (167)
T 1fxl_A 79 ARPSS 83 (167)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=145.70 Aligned_cols=277 Identities=13% Similarity=0.056 Sum_probs=164.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCCCHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTL----HVYTNLIHAYAVGRDMEEALSCVRKMKEE----G-IEMSLV 367 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~ 367 (798)
..+..+...+...|++++|+.+|+++.+.+ ..+. .++..+...|...|++++|+..|++.++. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345566778889999999999999999874 2233 46888888999999999999999887653 1 122456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRN-----------------MERAEALVR 425 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 425 (798)
++..+...|...|++++|+..|+++.... ......++..+..+|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78888888999999999999988876541 11134466777777777787 777777766
Q ss_pred HHHHcC----C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003749 426 DMEEEG----I-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS-PS----IISYGCLINLYTKIGKVSKALEVSK 495 (798)
Q Consensus 426 ~m~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~ 495 (798)
+..+.. . .....++..+...|...|++++|+..|++..+.... .+ ..++..+..+|...|++++|+..++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 654421 0 011234555566666666666666666655442100 01 1244455555555555555555555
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-
Q 003749 496 VMKSSGIK-HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR- 573 (798)
Q Consensus 496 ~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 573 (798)
++.+.... .+. .....++..+...|...|++++|...|++.......
T Consensus 288 ~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 288 RTLALAVELGER-------------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 44432100 000 001234444555555555555555555544332100
Q ss_pred ----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 574 ----PTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (798)
Q Consensus 574 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 605 (798)
....++..+...|.+.|++++|...|++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01234555666666666666666666666654
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=132.48 Aligned_cols=80 Identities=20% Similarity=0.392 Sum_probs=76.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~ 162 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD-MQTGSSRGYGFVSFTSQDDAQNAMDSM--QGQDLNGRPLRIN 162 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh--CCCccCCcEEEEE
Confidence 3458999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-13 Score=143.30 Aligned_cols=203 Identities=18% Similarity=0.098 Sum_probs=130.2
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CC
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GIE-MS 365 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~ 365 (798)
....+..+...+...|++++|+.+|+++.+.+ ..+ ..++..+...|...|++++|+..|++..+. +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45556777888889999999999999998873 223 356788888899999999999999887543 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC--------------------hHHH
Q 003749 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRN--------------------MERA 420 (798)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A 420 (798)
..++..+...|...|++++|+..|+++...... .+ ..++..+..+|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 556788888888999999999888887653111 01 3366677777777777 7777
Q ss_pred HHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHHHcCCHHHH
Q 003749 421 EALVRDMEEE----GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF-SPS----IISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 421 ~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A 490 (798)
.+.+++..+. +. .....++..+...|...|++++|+..|++..+... ..+ ..++..+..+|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665442 10 01123455556666666666666666665543210 001 12445555555555555555
Q ss_pred HHHHHHHH
Q 003749 491 LEVSKVMK 498 (798)
Q Consensus 491 ~~~~~~m~ 498 (798)
+..+++..
T Consensus 247 ~~~~~~al 254 (406)
T 3sf4_A 247 SEYYKKTL 254 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.52 E-value=8.9e-15 Score=134.32 Aligned_cols=82 Identities=30% Similarity=0.539 Sum_probs=77.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++ + ||..++|++|+|
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~i~V 160 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLD-KDTGQSRGFGFVTYDSADAVDRVCQ-N--KFIDFKDRKIEI 160 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCS-SSSSTTSEEEEEEESSHHHHHHHHH-C--SEECSSSSCEEE
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEc-CCCCccceEEEEEECCHHHHHHHHh-C--CCEEeCCeEEEE
Confidence 34569999999999999999999999999999999998 7899999999999999999999997 7 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
++++++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999876
|
| >1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.6e-15 Score=117.24 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=66.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.++.. .+..++|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~~~----~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSLCG----EDLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS------CCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC------CCCEEEEEECCHHHHHHHhc----CCceeCCEEEEEE
Confidence 3569999999999999999999999999999999864 58999999999999976432 2455689999999
Q ss_pred cccccch
Q 003749 230 LDDGRRL 236 (798)
Q Consensus 230 ~~~~~~~ 236 (798)
+++++..
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9988753
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=134.75 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=71.9
Q ss_pred cccceeecCCC-ccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++++||||||+ +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|++.| ||..+.|++|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l--ng~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS------KPGAAMVEMADGYAVDRAITHL--NNNFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT------STTCEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC------CCCEEEEEECCHHHHHHHHHHh--CCCEECCceEEE
Confidence 46799999999 89999999999999999999999876 2799999999999999999999 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.+++..
T Consensus 75 ~~s~~~ 80 (205)
T 3tyt_A 75 CVSKQP 80 (205)
T ss_dssp EECSCS
T ss_pred EEccCC
Confidence 998754
|
| >4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=137.13 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=75.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+||++++++++|+++|++||.|.+++|++| + +.++|||||+|.+.++|.+|++.| ||..|+||+|+|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d-~--~~~~g~~fV~f~~~~~a~~Ai~~l--ng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T--TEEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc-C--CCCceEEEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 4568999999999999999999999999999999987 2 457999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 177 ~a~~~~ 182 (213)
T 4f02_A 177 RFKSRK 182 (213)
T ss_dssp ECCCHH
T ss_pred EcCCCc
Confidence 998764
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=132.12 Aligned_cols=78 Identities=27% Similarity=0.548 Sum_probs=75.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+|||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQR 170 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCSEEEEEEEEESSTTHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHc--CCCEECCeEEEEEe
Confidence 469999999999999999999999999999999998 789999999999999999999999999 99999999999998
Q ss_pred c
Q 003749 231 D 231 (798)
Q Consensus 231 ~ 231 (798)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-13 Score=138.18 Aligned_cols=277 Identities=15% Similarity=0.098 Sum_probs=162.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GIE-MSLV 367 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~ 367 (798)
..+......+...|++++|+.+|+++.+.. ..+ ...+..+...|...|++++|+..+++..+. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345566778889999999999999999874 223 357788888999999999999999887643 111 1355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC--------------------hHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRN--------------------MERAEA 422 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 422 (798)
++..+...|...|++++|+..|+++...... .+ ..++..+..+|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7788888888999999999988887653111 11 3366677777777777 777777
Q ss_pred HHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 423 LVRDMEEE----GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG----F-SPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 423 ~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
.+++..+. +. .....++..+...|...|++++|+..+++..+.. . .....++..+...|...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665432 10 0112345555566666666666666666554320 0 0011244445555555555555555
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 003749 493 VSKVMKSSGIK-HNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 493 ~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 571 (798)
.+++..+.... .+. .....++..+...|...|++++|...+++.....
T Consensus 245 ~~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 245 YYKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 55544321000 000 0002344445555555555555555555543321
Q ss_pred CC-----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 572 HR-----PTSRTFMPIIHGFARAGEMKRALEIFDMMRRS 605 (798)
Q Consensus 572 ~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 605 (798)
.. ....++..+...|.+.|++++|...++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 00 01234455666666666666666666666553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-13 Score=141.88 Aligned_cols=303 Identities=14% Similarity=0.090 Sum_probs=181.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-C
Q 003749 435 PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMKSS----GIKH-N 505 (798)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~ 505 (798)
....+..+...+...|++++|+..|++..+.+.. + ..+|..+...|...|++++|+..++++... +..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4455666667777777777777777777665322 2 245666667777777777777777665432 1000 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 003749 506 MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIH 584 (798)
Q Consensus 506 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 584 (798)
..++..+...|...|++++|...+++..+.... .+. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 234444555555555666555555554432100 000 000123444444
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 585 GFARAGE--------------------MKRALEIFDMMRRS----GCI-PTVHTFNALILGLVEKRQMEKAIEILDEMTL 639 (798)
Q Consensus 585 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 639 (798)
.|...|+ +++|+..+.+..+. +.. ....++..+...|...|++++|+..+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 55665555554321 100 1134566667777778888888887777654
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 640 AGI-SPN----EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE-LD----VFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 640 ~~~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
... ..+ ..+|..+...|...|++++|..+++++.+.... .+ ..++..+..+|...|++++|..+++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 111 236777788888888888888888887654211 11 55677888888888888888888887764
Q ss_pred CCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCccc
Q 003749 710 QKI-PRN----TFVYNILIDGWARRGDVWEAADLMQQMKQE----GVQP-DVHTYTSFINACSKAGDMQV 769 (798)
Q Consensus 710 ~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~~~~~l~~~~~~~g~~~~ 769 (798)
..- ..+ ..++..+..+|...|++++|++.+++..+. |..+ ...++..+...+...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 310 011 457788888888899999999888887653 2111 24467777888888887643
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=132.55 Aligned_cols=84 Identities=25% Similarity=0.491 Sum_probs=79.1
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC-TTTCSEEEEEEEEESSSSHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec-CCCCCcceEEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 34569999999999999999999999999999999998 779999999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.+++++.
T Consensus 189 ~~a~~~~ 195 (198)
T 2yh0_A 189 QRASVGA 195 (198)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998774
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-12 Score=127.45 Aligned_cols=217 Identities=13% Similarity=0.143 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-CCCC
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYA-------RRGDM-------HRARQTFENMRA-RGIE 328 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~ 328 (798)
++|...|++++..+|. +...|..++..+. +.|++ ++|+.+|++.++ .. +
T Consensus 33 ~~a~~~~~~al~~~p~---------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-K 96 (308)
T ss_dssp HHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-T
T ss_pred HHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-c
Confidence 6788999999998887 5566666666665 35776 899999999988 33 3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM-SLV-TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGN 406 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (798)
.+...|..++..+.+.|++++|..+|+++++. .| +.. +|..++..+.+.|++++|+.+|+++.+.... +...|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~ 173 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVT 173 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 45668888999999999999999999999885 33 333 7888888888899999999999998876432 4445544
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHH
Q 003749 407 IIYAQC-QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG-FSP--SIISYGCLINLYT 482 (798)
Q Consensus 407 l~~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~ 482 (798)
.+.... ..|+.++|.++|++.++.. +.+...|..++..+.+.|+.++|+.+|++..... +.| ....|..++..+.
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 433322 3688888888888877753 3456777777777777778888888877777752 233 3556777777777
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 003749 483 KIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~ 500 (798)
+.|+.++|..+++++.+.
T Consensus 253 ~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777777664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-13 Score=144.01 Aligned_cols=280 Identities=14% Similarity=0.078 Sum_probs=135.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhh
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL----VTYSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAII 403 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 403 (798)
.+..+...+...|++++|+.+|+++++.+.. +. .+|..+...|...|++++|+..|+++.... ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445556666777777777777777665322 22 356666667777777777777776665420 0112234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHH
Q 003749 404 YGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF-SPSIISYGCLINLYT 482 (798)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~ 482 (798)
+..+..+|...|++++|.+.+++..+... ..+. .....++..+..+|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 44444445555555555555544433200 0000 011234455555555
Q ss_pred HcCC-----------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C
Q 003749 483 KIGK-----------------VSKALEVSKVMKSS----GI-KHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK-P 539 (798)
Q Consensus 483 ~~g~-----------------~~~A~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~ 539 (798)
..|+ +++|++.+++..+. +. ......+..+...|...|++++|+..|++..+.... .
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 55555555444321 00 001224444445555555555555555544332100 0
Q ss_pred C----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 003749 540 D----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCI-PTVHTF 614 (798)
Q Consensus 540 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~ 614 (798)
+ ..++..+..+|...|++++|+..|++....... .+.. ....++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------~~~~~~~~~~~ 306 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE-------------------------------LGEREVEAQSC 306 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-------------------------------TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH-------------------------------cCCHHHHHHHH
Confidence 0 123444444555555555555555444332100 0000 012344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 615 NALILGLVEKRQMEKAIEILDEMTLAG-----ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (798)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 675 (798)
..+...|...|++++|...+++..+.. ......++..+..+|...|++++|.++|+++.+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455555556666666666655544320 0011335666667777777777777777777665
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-14 Score=133.85 Aligned_cols=83 Identities=28% Similarity=0.471 Sum_probs=75.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+.++|||||||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++. ++..++|+.|.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~---~~~~~~g~~l~v 86 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEP 86 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHT---CSCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc-CCCCCccceEEEEeCCHHHHHHHHhc---CCCEECCEEeee
Confidence 45569999999999999999999999999999999998 88999999999999999999999965 799999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++.++.
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987664
|
| >2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-14 Score=130.12 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=75.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD-PATGRSRGFGFLSFEKPSSVDEVVK----TQHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCC-TTTSSCCSCEEEEESSTHHHHHHHH----SCCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEC-CCCCCccceEEEEEccHHHHHHHHh----cccccCCeEcccc
Confidence 4679999999999999999999999999999999998 8899999999999999999999998 4678999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.++.
T Consensus 77 ~~~~~~ 82 (167)
T 2cjk_A 77 RAIPRD 82 (167)
T ss_dssp ECCCHH
T ss_pred cccchh
Confidence 887653
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-14 Score=136.71 Aligned_cols=85 Identities=21% Similarity=0.385 Sum_probs=80.0
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
....++|||+||+.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.| ||..|+|+.|+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l--~g~~~~g~~i~ 198 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD-PTTGKHKGYGFIEYEKAQSSQDAVSSM--NLFDLGGQYLR 198 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBCSSSBCE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec-CCCCCcCceEEEEecCHHHHHHHHHHc--cCCEeCCcEEE
Confidence 345679999999999999999999999999999999998 789999999999999999999999999 99999999999
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|.+++++.
T Consensus 199 V~~a~~~~ 206 (216)
T 2qfj_A 199 VGKAVTPP 206 (216)
T ss_dssp EEECSSCS
T ss_pred EEEecCCC
Confidence 99998764
|
| >3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-14 Score=134.02 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=71.4
Q ss_pred cccccceeecCCCccC---------chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC
Q 003749 148 FRQEGKIFVGNLPNWI---------KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 218 (798)
..+.++||||||+..+ ++++|+++|++||.|.+|+|+.+ ||||||+|.+.++|..|+++| ||
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-------kG~AFV~F~~~~~Ae~A~~am--~g 201 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-------KNCGFVKFKYQANAEFAKEAM--SN 201 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHHH--TT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-------CCEEEEEeCCHHHHHHHHHHh--CC
Confidence 3456799999999998 79999999999999999999976 899999999999999999999 99
Q ss_pred eee------------cceeeeeeccccc
Q 003749 219 VEF------------HGRVLTVKLDDGR 234 (798)
Q Consensus 219 ~~~------------~g~~~~v~~~~~~ 234 (798)
..| .|+.|.|+||+..
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CEEeccccccccccCCCCEEEEEEccCC
Confidence 999 8999999999765
|
| >2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-14 Score=130.77 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=73.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
...++|||||||+++++++|+++|++||.|.+|++.++ + +|+++|||||+|++.++|.+|+..+ +..++||.|.|
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~-~~~~kG~aFVeF~~~e~A~~A~~~~---~~~~~Gr~l~V 181 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-L-HKAFKGSIFVVFDSIESAKKFVETP---GQKYKETDLLI 181 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC-T-TCCEEEEEEEEESSHHHHHHHHHCT---TCEETTEECEE
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC-C-CCCcccEEEEEECCHHHHHHHHHhC---CCeECCEEEEE
Confidence 34579999999999999999999999999999999987 3 5999999999999999999999865 56999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.+++.-
T Consensus 182 ~~~~~y 187 (193)
T 2voo_A 182 LFKDDY 187 (193)
T ss_dssp EETTTC
T ss_pred EEhHHH
Confidence 987654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=141.79 Aligned_cols=193 Identities=10% Similarity=-0.031 Sum_probs=95.1
Q ss_pred CHhhHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDM-HRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
+...+..+...|...|++ ++|++.|+++++.. +.+...|..+..+|.+.|++++|+..|++.++. .|+..++..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344445555555555555 55555555555542 223445555555555555555555555555543 23345555555
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCC---
Q 003749 374 GGFAKM---------GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT--------RNMERAEALVRDMEEEGID--- 433 (798)
Q Consensus 374 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~--- 433 (798)
..|... |++++|+..|+++.+.... +...|..+..+|... |++++|++.|++.++.. +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 555555 5555555555555544322 444555555555554 55555555555555432 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 003749 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEV 493 (798)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 493 (798)
.+...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|++.
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444455555555555555555555554443211 333444444444444444444443
|
| >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-14 Score=134.95 Aligned_cols=86 Identities=24% Similarity=0.411 Sum_probs=76.9
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
...+.++|||+|||.++++++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~l 100 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD-SVTMKHKGFAFVEYEVPEAAQLALEQM--NSVMLGGRNI 100 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC--CC-CCCSEEEEEESSHHHHHHHHHHH--SSCCCC-CCC
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeec-CCCCccCceEEEEeCCHHHHHHHHHHc--cCCeeCCeeE
Confidence 3455679999999999999999999999999999999998 788999999999999999999999989 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
+|.++....
T Consensus 101 ~v~~~~~~~ 109 (216)
T 2qfj_A 101 KVGRPSNIG 109 (216)
T ss_dssp EEECCSCCG
T ss_pred EEecCCCcc
Confidence 998876654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=134.02 Aligned_cols=276 Identities=15% Similarity=0.113 Sum_probs=163.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHH
Q 003749 438 IYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS----IISYGCLINLYTKIGKVSKALEVSKVMKSS----GIK-HNMKT 508 (798)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~ 508 (798)
.+......+...|++++|+.+|+++.+.... + ...+..+...|...|++++|++.++++.+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445556666777777777777776665322 2 245566666667777777777766665432 000 01233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 003749 509 YSMLINGFLKLKDWANVFAVFEDVMRDGLK-PDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFA 587 (798)
Q Consensus 509 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 587 (798)
+..+...|...|++++|...+++..+.... .+.. ....++..+...|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHH
Confidence 444444555555555555555544332100 0100 00123444444555
Q ss_pred hcCC--------------------HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 003749 588 RAGE--------------------MKRALEIFDMMRRS----GCI-PTVHTFNALILGLVEKRQMEKAIEILDEMTLAG- 641 (798)
Q Consensus 588 ~~~~--------------------~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~- 641 (798)
..|+ +++|...+++..+. +.. .....+..+...+...|++++|...+++..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 55555555554321 100 113456666777778888888888887765421
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-
Q 003749 642 ----ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLE-LD----VFTYEALLKACCKSGRMQSALAVTKEMSAQK- 711 (798)
Q Consensus 642 ----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 711 (798)
......++..+...+...|++++|.++++++.+.... .+ ..++..+..+|...|++++|..+++++.+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0011236777888888888888888888887654211 11 5567788888889999999999888876431
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 712 ----IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 712 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
......++..+..+|.+.|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111346778889999999999999999988764
|
| >3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-14 Score=127.86 Aligned_cols=80 Identities=23% Similarity=0.479 Sum_probs=74.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||.++++++|+++|++||.|.++++.++ + +|+++|||||+|.+.++|.+|++.+ ||..+.|+.|+|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~-~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-K-NNKNVNYAFVEYHQSHDANIALQTL--NGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECC-C-C-CCEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEEC-C-CCCCCCEEEEEeCCHHHHHHHHHHc--CCCccCCCeeEEEEc
Confidence 48999999999999999999999999999999987 3 5889999999999999999999999 999999999999998
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
.+..
T Consensus 77 ~~~~ 80 (166)
T 3md3_A 77 FQSQ 80 (166)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-11 Score=121.98 Aligned_cols=218 Identities=9% Similarity=0.031 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCh-------HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 003749 313 HRARQTFENMRARGIEPTLHVYTNLIHAYAV-------GRDM-------EEALSCVRKMKE-EGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~A~~~~~~m~~-~g~~~~~~~~~~l~~~~~ 377 (798)
++|+.+|+++++.. +.+...|..++..+.. .|++ ++|+.+|++.++ .. +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 67788888888763 4577778877777653 4775 788888888877 32 235667778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT-IIGNEEKC 455 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 455 (798)
+.|++++|+.+|+++++.... +.. +|..++..+.+.|++++|..+|++.++.+ +.+...|...+.... ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888775322 333 67777777777777777777777777654 233444443333322 25667777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG-IKH--NMKTYSMLINGFLKLKDWANVFAVFEDV 532 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (798)
+.+|++.++... -+...|..++..+.+.|++++|..+|+++.... +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777766665422 245566666666666666666666666666642 222 3455666666666666666666666666
Q ss_pred HHc
Q 003749 533 MRD 535 (798)
Q Consensus 533 ~~~ 535 (798)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=114.86 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=97.6
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
++..|..+...|.+.|++++|++.|++.++.. +.+..++..+..+|.+.|++++|+..++...... +-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34556666666666666666666666666653 3355566666666666666666666666665543 224555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
.+...++++.|...+++....... +..++..+..+|.+.|++++|++.|++.++.+ +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666666666666666666554322 45555555666666666666666666655543 3344555555555555555555
Q ss_pred HHHHHHHHHH
Q 003749 455 CLIVFERLKE 464 (798)
Q Consensus 455 A~~~~~~~~~ 464 (798)
|+..|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
|
| >1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=130.75 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=74.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||+|||+++++++|+++|++||.|.+|++..+ +.+|+++|||||+|.+.++|.+|+.. +|..++|+.|.|.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~---~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVIQ---KYHTVNGHNCEVRK 179 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHC---SCCEETTEECEEEE
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec-CCCCCccceEEEEECCHHHHHHHHHh---CCcEECCEEEEEEe
Confidence 369999999999999999999999999999999998 78999999999999999999999974 69999999999999
Q ss_pred ccccch
Q 003749 231 DDGRRL 236 (798)
Q Consensus 231 ~~~~~~ 236 (798)
+.++..
T Consensus 180 a~~k~~ 185 (196)
T 1l3k_A 180 ALSKQE 185 (196)
T ss_dssp CC----
T ss_pred cCChhH
Confidence 987753
|
| >1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=127.25 Aligned_cols=79 Identities=24% Similarity=0.449 Sum_probs=74.4
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc--eeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~ 227 (798)
..++|||+|||.++++++|+++|++||.|.++++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++| ++|+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD-KLTGRPRGVAFVRYNKREEAQEAISAL--NNVIPEGGSQPLS 164 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEc-CCCCCcceEEEEEECCHHHHHHHHHHh--cCCEecCCCeEEE
Confidence 3468999999999999999999999999999999998 778999999999999999999999999 9999988 9999
Q ss_pred eecc
Q 003749 228 VKLD 231 (798)
Q Consensus 228 v~~~ 231 (798)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-12 Score=136.71 Aligned_cols=215 Identities=9% Similarity=-0.013 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 003749 522 WANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNM-DRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFD 600 (798)
Q Consensus 522 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 600 (798)
+++++..++....... .+...+..+..+|...|++ ++|+..|++..+.... +...|..+..+|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555666665554433 3677777788888888888 8888888887776543 56677788888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChH
Q 003749 601 MMRRSGCIPTVHTFNALILGLVEK---------RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL--------GDTG 663 (798)
Q Consensus 601 ~~~~~~~~p~~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~--------g~~~ 663 (798)
++.+.. |+...+..+..+|... |++++|+..|++.++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887754 5567777788888888 88888888888887764 44577888888888888 8899
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003749 664 KAFEYFTKLRNEGLE--LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQ 741 (798)
Q Consensus 664 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 741 (798)
+|++.|+++++.... -+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988886531 378888889999999999999999999888765 56777888888888888888888876655
Q ss_pred H
Q 003749 742 M 742 (798)
Q Consensus 742 m 742 (798)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-11 Score=113.99 Aligned_cols=167 Identities=15% Similarity=0.108 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+..+|..+...|.+.|++++|++.|++.++.. +-+..+|..++.+|.+.|++++|+..++.+...... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45566777777777777777777777776654 225666777777777777777777777776665332 5556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK 489 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 489 (798)
.+...++++.|.+.+.+..+.. +.+..++..+..+|...|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 6666677777777666666653 334556666666666666666666666666654322 45566666666666666666
Q ss_pred HHHHHHHHHHC
Q 003749 490 ALEVSKVMKSS 500 (798)
Q Consensus 490 A~~~~~~m~~~ 500 (798)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666666553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-11 Score=131.33 Aligned_cols=231 Identities=12% Similarity=0.048 Sum_probs=151.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC------CcccHH
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRD----GLKP-DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP------TSRTFM 580 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 580 (798)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|+..+.+........ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455566666666666665542 1011 23456666666777777777776666655431111 123566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003749 581 PIIHGFARAGEMKRALEIFDMMRRSGCI-P----TVHTFNALILGLVEKRQMEKAIEILDEMTL-----AGISPNEHTYT 650 (798)
Q Consensus 581 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-p----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~t~~ 650 (798)
.+...|...|++++|+..|+++.+.... . ...++..+..+|...|++++|+..|++..+ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777888888888888776643110 1 124677788888888899999888888766 22133456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003749 651 TIMHGYASLGDTGKAFEYFTKLRNEG----LELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILI 723 (798)
Q Consensus 651 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (798)
.+...|.+.|++++|.+.+++..+.. -......+..+...|...|+ +++|+.++++... .+.....+..|.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 88888999999999999988887541 11122335667788888888 7777777776621 122344677889
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (798)
..|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=125.37 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=73.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee--ee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV--LT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~--~~ 227 (798)
..++|||+|||.++++++|+++|++||.|.++++..+ +.+|+++|||||+|.+.++|.+|++.| ||..++|+. |+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPIT 163 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHh--cCCccCCCccceE
Confidence 3468999999999999999999999999999999998 778999999999999999999999999 999999976 77
Q ss_pred eecc
Q 003749 228 VKLD 231 (798)
Q Consensus 228 v~~~ 231 (798)
|++|
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-11 Score=129.90 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=128.0
Q ss_pred HHHcCChHHHHHHHHHHHHC--CCCCCH--HHHHHHHHH--HHccCChHHHH-----------HHHHHHHHcCCCCC---
Q 003749 306 YARRGDMHRARQTFENMRAR--GIEPTL--HVYTNLIHA--YAVGRDMEEAL-----------SCVRKMKEEGIEMS--- 365 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~ll~~--~~~~g~~~~A~-----------~~~~~m~~~g~~~~--- 365 (798)
+.+.+++++|..+++++.+. ....|. ..|..++.. ..-.++++.+. ++++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 35688999999999998764 222233 333444322 11223333344 55555543210001
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------
Q 003749 366 -LVTYSIIVGGFAKMGNAEAADHWFEEAKER----HATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID------ 433 (798)
Q Consensus 366 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~------ 433 (798)
...+...+..+...|++++|+..|+++... +... ...++..+..+|...|++++|.+.+++..+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112233666777888888888888888653 1111 2356777777778888888888877776653110
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C
Q 003749 434 APIDIYHMMMDGYTIIGNEEKCLIVFERLKECG----FSP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS----GI-K 503 (798)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~ 503 (798)
....+++.+..+|...|++++|+..|++..+.. ..+ ...++..+..+|...|++++|++.+++..+. +. .
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 012456666667777777777777766665431 000 1135556666666666666666666666541 11 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 504 HNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 504 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
....++..+...|.+.|++++|...+++..+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234555555666666666666666655443
|
| >1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.4e-14 Score=114.46 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=64.5
Q ss_pred ecCCCccCchHHHHHHh------------cccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 156 VGNLPNWIKKHLVMEFF------------RQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 156 v~nl~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
++||+.++++++|++.| ++||.|.+|+|.++ + +|+++|||||+|.+.++|.+|+..| ||..++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~-~-~~~~~G~~fV~f~~~~~A~~A~~~l--ng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN-L-GDHLVGNVYVKFRREEDAEKAVIDL--NNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS-S-SSSSEEEEEEEESCHHHHHHHHHHH--TTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC-C-CCCccEEEEEEECCHHHHHHHHHHH--CCCEECC
Confidence 56788888888777666 99999999999987 3 4899999999999999999999999 9999999
Q ss_pred eeeeeecc
Q 003749 224 RVLTVKLD 231 (798)
Q Consensus 224 ~~~~v~~~ 231 (798)
|+|+|+++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99999876
|
| >3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-13 Score=112.05 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=71.4
Q ss_pred cccceeecCC--CccCc--------hHHHHHHhcccCcceEEEEecCCCCC--CCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 150 QEGKIFVGNL--PNWIK--------KHLVMEFFRQFGPIKNVILIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 150 ~~~~~~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
+++.|.+.|+ +.++. +++|++.|++||.|.+|+|.++ +.+ ++++||+||+|.+.++|.+|+..| |
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~-~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l--n 80 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGL--T 80 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCC-BTTBCCTTTTEEEEEESSHHHHHHHHHHH--T
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEecc-CCCCCcCCcEEEEEEECCHHHHHHHHHHh--C
Confidence 3457888887 33443 3589999999999999999987 443 478999999999999999999999 9
Q ss_pred Ceeecceeeeeecccccchh
Q 003749 218 GVEFHGRVLTVKLDDGRRLK 237 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~~~~ 237 (798)
|..++||.|+|.+.......
T Consensus 81 G~~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 81 GRKFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp TCEETTEECEEEEECHHHHH
T ss_pred CCEeCCCEEEEEEeCHHHHh
Confidence 99999999999998766543
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=125.55 Aligned_cols=79 Identities=23% Similarity=0.425 Sum_probs=72.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec---ceee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GRVL 226 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g~~~ 226 (798)
..++|||+|||.++++++|+++|++||.|.++++.++ + +|+++|||||+|.+.++|.+|++.| ||..+. |++|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~~~l 169 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-P-DGLSRGCAFVTFTTRAMAQTAIKAM--HQAQTMEGCSSPM 169 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-T-TSCEEEEEEEEESSHHHHHHHHHHH--TTSCCCTTCSSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-C-CCCEEEEEEEEECCHHHHHHHHHHh--cCCcccCCCCCCe
Confidence 4568999999999999999999999999999999987 3 5999999999999999999999999 998776 4999
Q ss_pred eeeccc
Q 003749 227 TVKLDD 232 (798)
Q Consensus 227 ~v~~~~ 232 (798)
+|.+|.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999873
|
| >3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=126.72 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=74.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCC--CCcceEEEEeCChhHHHHHHHhcccCCeeec---ce
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE--KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---GR 224 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g~ 224 (798)
+.++|||||||+++++++|+++|++||.|.+++++++ +.+| +++|||||+|.+.++|.+|++.+ ||..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRD-RSQNPPQSKGCCFVTFYTRKAALEAQNAL--HNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-CSSSSCEEEEEEEEEESSHHHHHHHHHHH--TTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec-CCCCCCCcceEEEEEECCHHHHHHHHHHh--cCcEEccCCcc
Confidence 4569999999999999999999999999999999998 6676 89999999999999999999999 998776 67
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
.+.+..+....
T Consensus 79 ~~~~~~~~~~~ 89 (175)
T 3nmr_A 79 PIQMKPADSEK 89 (175)
T ss_dssp CCEEEECGGGC
T ss_pred ceEEccccccc
Confidence 78887776553
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=125.41 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=71.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||.++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~ 169 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSLY 169 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE------CSSSSCCSEEEEECSSHHHHHHHHHHH--TEEEETTEEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe------cCCCCCceEEEEEECCHHHHHHHHHHh--CCCEECCeEEEEE
Confidence 45699999999999999999999999988766 357889999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99876
|
| >2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-13 Score=111.91 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=68.4
Q ss_pred ccccceeecCCCccCc-----------hHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 149 RQEGKIFVGNLPNWIK-----------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
.+.++|+|.||....+ +++|+++|++||.|.+|.| .+ + .++|||||+|.+.++|.+|+..| |
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~-~---~~~G~afV~f~~~~~A~~Ai~~l--n 85 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD-R---HPDGVASVSFRDPEEADYCIQTL--D 85 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET-T---CTTCEEEEECSCHHHHHHHHHHS--T
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec-C---CCCEEEEEEECCHHHHHHHHHHc--C
Confidence 4456999999943322 5799999999999999966 45 2 37999999999999999999999 9
Q ss_pred Ceeecceeeeeecccccc
Q 003749 218 GVEFHGRVLTVKLDDGRR 235 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~~ 235 (798)
|..++||+|+|.++.++.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=132.65 Aligned_cols=170 Identities=13% Similarity=0.045 Sum_probs=129.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------C
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRAR-------GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE------G 361 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g 361 (798)
+...+..+...|...|++++|+.+|+++.+. .......++..+...|...|++++|+..|+++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456788899999999999999999999883 22334567888999999999999999999998764 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 003749 362 I-EMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------HA-TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE--- 430 (798)
Q Consensus 362 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--- 430 (798)
- .....++..++..|...|++++|+..|+++... +. .....++..+..+|...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 224667888999999999999999999988764 11 223456777788888888888888888887764
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 431 ---GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 431 ---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
+. .....++..+..+|...|++++|+.+|+++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 11234567777777778888888877777765
|
| >3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-13 Score=135.09 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=74.8
Q ss_pred cccccceeecCCCccCchHHHH----HHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
.++.++|||||||+++++++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.| ||..|.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g 79 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYD 79 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----CCCcceEEEEEECCHHHHHHHHHHh--cCCeeCC
Confidence 3456799999999999999977 8999999999999875 5889999999999999999999999 9999999
Q ss_pred eeeeeecccccc
Q 003749 224 RVLTVKLDDGRR 235 (798)
Q Consensus 224 ~~~~v~~~~~~~ 235 (798)
+.|+|.+++...
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999996654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=132.94 Aligned_cols=170 Identities=17% Similarity=0.115 Sum_probs=130.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------H 396 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 396 (798)
+..++..+...|...|++++|+.+|+++.+. .......++..++..|...|++++|+..|+++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4557888999999999999999999999873 22335677899999999999999999999998764 1
Q ss_pred -CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 003749 397 -ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE------GI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC--- 465 (798)
Q Consensus 397 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 465 (798)
......++..+..+|...|++++|.+.++++.+. +. .....++..+...|...|++++|+.+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1224567788888899999999999999888764 11 123456777788888888888888888887664
Q ss_pred ---CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 466 ---GFSP-SIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 466 ---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
+..+ ...++..+..+|...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 245677777888888888888888877765
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-13 Score=129.94 Aligned_cols=79 Identities=25% Similarity=0.508 Sum_probs=73.1
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
...+.++|||||||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+..+ ||..++|+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l--~g~~i~g~~l 88 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-------RGFGFIRLESRTLAEIAKAEL--DGTILKSRPL 88 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCEETTEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CcEEEEEECCHHHHHHHHHHc--CCcEECCcee
Confidence 4456679999999999999999999999999999999776 899999999999999999989 9999999999
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
+|.++.+.
T Consensus 89 ~v~~a~~~ 96 (261)
T 3sde_A 89 RIRFATHG 96 (261)
T ss_dssp EEEECCCS
T ss_pred EeeecccC
Confidence 99998753
|
| >1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-13 Score=126.50 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=73.2
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++.++|||||||.++++++|+++|++||.+.. .++.+ ..+|+++|||||+|.+.++|.+|++ + ||..+.|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~v 85 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKL 85 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHHH-G--GGEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEE-CCCCccccEEEEEECCHHHHHHHHh-c--CCCEeCCeEEEE
Confidence 45679999999999999999999999999887 34445 5789999999999999999999994 8 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++.++.
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9998764
|
| >3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.8e-13 Score=111.73 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=72.7
Q ss_pred ccccceeecCCC--ccC---chHHHHHHhcccCcceEEEEecCCCC---CCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLP--NWI---KKHLVMEFFRQFGPIKNVILIKGYNN---FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~--~~~---~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
.+++.|++.|+- .++ -+++|++.|++||.|.+|+|.+++.. +++++||+||+|.+.++|.+|+..| ||..
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L--nGr~ 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRW 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH--TTCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH--CCCE
Confidence 456789999983 222 24789999999999999999988321 5678899999999999999999999 9999
Q ss_pred ecceeeeeecccccch
Q 003749 221 FHGRVLTVKLDDGRRL 236 (798)
Q Consensus 221 ~~g~~~~v~~~~~~~~ 236 (798)
++||.|+|.++....+
T Consensus 96 f~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 96 FAGRKVVAEVYDQERF 111 (118)
T ss_dssp ETTEECEEEEECHHHH
T ss_pred ECCcEEEEEEcChHhc
Confidence 9999999999866543
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.1e-13 Score=127.20 Aligned_cols=78 Identities=17% Similarity=0.335 Sum_probs=72.5
Q ss_pred ccccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.++++|||||||+ ++++++|+++|++||.|.+|++.++ + +|||||+|.+.++|.+|++.+ ||..+.|+.|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~-~-----~g~afV~F~~~~~A~~Ai~~l--~g~~~~g~~l~ 103 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIR 103 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT-T-----SCCEEEEESCHHHHHHHHHHH--TTCBCSSSBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC-C-----CCEEEEEECCHHHHHHHHHHh--CCCeECCeEEE
Confidence 4456999999999 9999999999999999999999987 2 799999999999999999999 99999999999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|.+++..
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9998755
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-13 Score=134.03 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=74.9
Q ss_pred ccccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCC-CCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 149 RQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNN-FEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
...++|||+|||.+ +++++|+++|++||.|.+|++.++ .. ||+++|||||+|.+.++|.+|+ .| ||..|+|+.|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~tg~~~g~afV~F~~~~~A~~A~-~l--~g~~~~g~~i 283 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG-QKEHSFNNCCAFMVFENKDSAERAL-QM--NRSLLGNREI 283 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC-CC---CCCEEEEEEESSHHHHHHHG-GG--TTEEETTEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec-CCcCCCCceEEEEEeCCHHHHHHHH-Hh--cCCEECCcEE
Confidence 34569999999999 999999999999999999999987 44 6999999999999999999999 99 9999999999
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
+|.+++++
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999875
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=131.58 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=77.8
Q ss_pred cccceeecCCCccC-chHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWI-KKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++|||+|||.++ ++++|+++|++||.|.++++..+ . +|+++|||||+|.+.++|.+|+..| ||..++|+.|+|
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v 258 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG-Q-DGQLKGFAVLEYETAEMAEEAQQQA--DGLSLGGSHLRV 258 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC-S-SCCEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC-C-CCCcccEEEEEeCCHHHHHHHHHHh--CCCccCCeEEEE
Confidence 45689999999995 99999999999999999999987 3 7999999999999999999999999 999999999999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
.+++++...
T Consensus 259 ~~a~~~~~~ 267 (284)
T 3smz_A 259 SFCAPGPPG 267 (284)
T ss_dssp EECCSSSCH
T ss_pred EEecCCCcc
Confidence 999887643
|
| >3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-13 Score=124.25 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=68.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcc--eEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce---
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPI--KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR--- 224 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~--- 224 (798)
+.++|||+|||+++++++|+++|++||.| .++++..+ + |+++|||||+|++.++|.+|+..| ||..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~-~--~~~~g~gfV~f~~~~~A~~Ai~~l--ng~~~~g~~~~ 196 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG-K--SERSSSGLLEWDSKSDALETLGFL--NHYQMKNPNGP 196 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC-C--SSSSEEEEEECSSHHHHHHHHHHH--TTCEECCSSSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC-C--CCCceEEEEEeCCHHHHHHHHHHh--CCCCccCCCCC
Confidence 45689999999999999999999999999 89999877 3 566799999999999999999999 99999988
Q ss_pred -eeeeecc
Q 003749 225 -VLTVKLD 231 (798)
Q Consensus 225 -~~~v~~~ 231 (798)
++.|+++
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 4666664
|
| >3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=130.84 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=78.6
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.++|.+|+..+ ||..++|+.|.|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDL--LGKPLGPRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEEEE
Confidence 4568999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.+..
T Consensus 171 ~a~~~~ 176 (284)
T 3smz_A 171 WTDAGQ 176 (284)
T ss_dssp ECCGGG
T ss_pred ECCCCC
Confidence 997764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.6e-11 Score=123.50 Aligned_cols=230 Identities=8% Similarity=0.008 Sum_probs=155.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC------CCcccHH
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRDGLK-P----DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHR------PTSRTFM 580 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~ 580 (798)
....+...|++++|+..|++..+.... . ...++..+...|...|++++|+..+.+....... ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 334455667777777777766543110 1 2345666777777777777777777766543111 0134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003749 581 PIIHGFARAGEMKRALEIFDMMRRS----GCI-PTVHTFNALILGLVEKRQMEKAIEILDEMTL-----AGISPNEHTYT 650 (798)
Q Consensus 581 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~t~~ 650 (798)
.+..+|...|++++|+..|.++.+. +.. ....+++.+..+|...|++++|+..|++..+ .. .....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6777788888888888888777643 111 1234667778888889999999999888776 33 22367788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003749 651 TIMHGYASLGDTGKAFEYFTKLRNEGL----ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILI 723 (798)
Q Consensus 651 ~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (798)
.+...|.+.|++++|..++++..+... ......+..+...|...|+ +++|+.++++... .+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHH
Confidence 888999999999999999999887522 2224455666667777777 7777777776321 112234667889
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (798)
..|...|++++|.+.+++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-10 Score=121.56 Aligned_cols=236 Identities=13% Similarity=0.020 Sum_probs=121.3
Q ss_pred hHHHHHHHH--HHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH--HHccCChHHHH---------HHHHHHHHc
Q 003749 298 EFGLMVNYY--ARRGDMHRARQTFENMRAR--GIEPT--LHVYTNLIHA--YAVGRDMEEAL---------SCVRKMKEE 360 (798)
Q Consensus 298 ~~~~li~~~--~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~ll~~--~~~~g~~~~A~---------~~~~~m~~~ 360 (798)
.-..|-.+| ...+++++|.++++++.+. ...-| ...|-.++.. ..-.+.+..+. +.++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334444566 6788999999999987663 11122 3333444332 11112222222 444444321
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 361 GIEMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-L----NAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 361 g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
....+ ...|...+..+...|++++|+..|+++...-.. . ...++..+..+|...|++++|...+++..+..
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 10001 112334455566778888888888777653110 1 23456666777777777777777776665421
Q ss_pred C--C----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 003749 432 I--D----APIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFS-PSIISYGCLINLYTKIGKVSKALEVSKVMKS- 499 (798)
Q Consensus 432 ~--~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 499 (798)
. . ....+++.+..+|...|++++|++.|++..+. +.. ....++..+..+|...|++++|++.|++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0 0 01334556666666666666666666665542 110 0123455555566666666666666655554
Q ss_pred ----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 500 ----SGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 500 ----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
.. .....++..+...|.+.|++++|...+++..+
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 21 11234444555555555555555555555444
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=124.03 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=71.3
Q ss_pred ccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+++|||||||+ ++++++|+++|++||.|.+|+++++ + +|||||+|.+.++|.+|++.+ ||..++|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~-~-----~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT-C-----SSCCEEECTTTHHHHHHHHHH--TTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC-C-----CCEEEEEECCHHHHHHHHHHh--CCCeecCeEEEEE
Confidence 46999999999 9999999999999999999999987 2 799999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++..
T Consensus 75 ~a~~~ 79 (198)
T 1qm9_A 75 LSKHQ 79 (198)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98755
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.6e-10 Score=116.41 Aligned_cols=234 Identities=10% Similarity=-0.006 Sum_probs=140.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHH
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLH----VYTNLIHAYAVGRDMEEALSCVRKMKEEGI-EMS----LVTYS 370 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~ 370 (798)
..+...+...|++++|+..+++.....-..+.. +++.+...|...|++++|...+++..+..- ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556778899999999999988764222222 456667778888999999999988765310 012 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChhhH
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERH----AT--L-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA----PIDIY 439 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~ 439 (798)
.+...+...|++++|+..|++..... .. + ...++..+..+|...|++++|.+.+++..+..... ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 77778888888888888888876531 11 1 23455567777778888888888887776643211 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 003749 440 HMMMDGYTIIGNEEKCLIVFERLKECGFSPS-IISYG-----CLINLYTKIGKVSKALEVSKVMKSSGIKH---NMKTYS 510 (798)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~ 510 (798)
..+...+...|++++|...+++........+ ...+. .++..+...|++++|...+++........ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6666677777777777777776654311111 01111 12233556666666666666655432111 012334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 003749 511 MLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
.+...+...|++++|...++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.1e-11 Score=133.13 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=149.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|+.|...|.+.|++++|++.|+++++.. +.+..+|+.+..+|.+.|++++|++.|++.++.+ +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678999999999999999999999999974 4467889999999999999999999999999875 336889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK 454 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (798)
+|.+.|++++|++.|+++++.+.. +..+|..+..+|.+.|++++|++.|++.++.. +.+...|..++.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999987544 78899999999999999999999999999975 4567889999999999999999
Q ss_pred HHHHHHHHHH
Q 003749 455 CLIVFERLKE 464 (798)
Q Consensus 455 A~~~~~~~~~ 464 (798)
|.+.|+++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988865
|
| >2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-12 Score=117.32 Aligned_cols=76 Identities=28% Similarity=0.553 Sum_probs=67.5
Q ss_pred ccccceeecCCCccCchHHHHHHhccc----C-------cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQF----G-------PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
++.++|||||||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .+ |
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-------~g~afV~f~~~~~A~~A~-~~--~ 71 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AF--D 71 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-------TTEEEEEESSHHHHHHHG-GG--T
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-------CCEEEEEeCCHHHHHHHH-Hh--C
Confidence 456799999999999999999999999 5 6666666544 899999999999999999 78 9
Q ss_pred Ceeecceeeeeeccccc
Q 003749 218 GVEFHGRVLTVKLDDGR 234 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~ 234 (798)
|..++|+.|+|.++...
T Consensus 72 ~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 72 GIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp TCEETTEECEEECCSSC
T ss_pred CcEecCceeeecCCccc
Confidence 99999999999988655
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=131.76 Aligned_cols=167 Identities=16% Similarity=0.027 Sum_probs=150.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 408 (798)
.+..+|+.|..+|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|++.|+++++.+.. +..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 356789999999999999999999999999874 336889999999999999999999999999988544 788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 003749 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS 488 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 488 (798)
.+|.+.|++++|++.|++.++.+ +.+..+|+.+..+|...|++++|+..|++.++.... +...|..+..+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999975 456889999999999999999999999999987433 6788999999999999999
Q ss_pred HHHHHHHHHHH
Q 003749 489 KALEVSKVMKS 499 (798)
Q Consensus 489 ~A~~~~~~m~~ 499 (798)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-10 Score=106.50 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..|..+...+...|++++|+..|+++.+.. ..+..++..+...|...|++++|+..++++.+.. +.+..++..++..|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345566677777778888887777776653 3456667777777777777777777777777653 33566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
...|++++|++.|+++..... .+...+..++.+|...|++++|.+.++++.+.. +.+..++..++..|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777766532 255666666666677777777777776666653 334555666666666666666666
Q ss_pred HHHHHHHH
Q 003749 457 IVFERLKE 464 (798)
Q Consensus 457 ~~~~~~~~ 464 (798)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.6e-10 Score=115.64 Aligned_cols=165 Identities=8% Similarity=-0.108 Sum_probs=95.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHH
Q 003749 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL----VTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYG 405 (798)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 405 (798)
..+...+...|++++|+..+++.+......+. .+++.+...|...|++++|+..+++....... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445566778888888888887765322222 24566677777888888888888877653111 01 12345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC----CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----cCHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEG----ID--A-PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS----PSIISY 474 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~ 474 (798)
.+..++...|++++|.+.+++..+.. .. + ....+..+...|...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 56666777777777777776665421 11 1 1234445556666666666666666665543211 012345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 475 GCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
..+...+...|++++|...+++...
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555556666666666666655543
|
| >2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.8e-12 Score=122.14 Aligned_cols=78 Identities=10% Similarity=0.217 Sum_probs=71.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVL 226 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~ 226 (798)
.+.++|||+|||.++++++|+++|++|| .|.+++++.+ ++|||||+|.+.++|.+|+..| ||..++ |+.|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~l--~g~~~~~g~~l 220 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDL--HNHDLGENHHL 220 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS------STTCEEEEESSHHHHHHHHHHH--TTCBSSSSCBC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC------CCcEEEEEECCHHHHHHHHHHH--CCCccCCCCeE
Confidence 3457999999999999999999999999 9999999753 2799999999999999999999 999999 9999
Q ss_pred eeeccccc
Q 003749 227 TVKLDDGR 234 (798)
Q Consensus 227 ~v~~~~~~ 234 (798)
+|.+++++
T Consensus 221 ~v~~a~~~ 228 (229)
T 2adc_A 221 RVSFSKST 228 (229)
T ss_dssp EEEECSSC
T ss_pred EEEEecCC
Confidence 99999875
|
| >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-12 Score=120.45 Aligned_cols=77 Identities=10% Similarity=0.223 Sum_probs=71.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec-ceeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH-GRVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-g~~~~ 227 (798)
+.++|||+|||.++++++|+++|++|| .|.+++++.+ .+|||||+|.+.++|.+|+..| ||..++ |+.|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~------~~g~afV~f~~~~~A~~A~~~l--~g~~~~~g~~l~ 190 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------DRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLR 190 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST------TSSCEEEECSSHHHHHHHHHHH--TSSCCSSCCSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC------CCcEEEEEeCCHHHHHHHHHHh--cCCccCCCCeEE
Confidence 346999999999999999999999999 9999999764 2799999999999999999999 999999 99999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|.+++++
T Consensus 191 v~~a~~~ 197 (198)
T 1qm9_A 191 VSFSKST 197 (198)
T ss_dssp EEEECCC
T ss_pred EEeeccc
Confidence 9999765
|
| >2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.4e-12 Score=100.83 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=57.7
Q ss_pred ccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccccc
Q 003749 161 NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235 (798)
Q Consensus 161 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~~ 235 (798)
.++++++|+++|++||.|.+|+|+ ++++|||||+|++.++|..|++.+ ++ +.|++|+|++++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~~--~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS------SKKPGTAVVEFATVKAAELAVQNE--VG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE------SSSSSEEEEEESCHHHHHHHHHTC--CB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc------cCCCCEEEEEECCHHHHHHHHHhc--CC--CCCCeEEEEEccCCC
Confidence 578999999999999999999997 356999999999999999999865 44 679999999997764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.7e-10 Score=105.14 Aligned_cols=163 Identities=11% Similarity=0.071 Sum_probs=91.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
.+..+...+...|++++|+..|+++.+.. +.+..++..++..|...|++++|+..|+++..... .+..++..++.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 45555566666666666666666665542 22555666666666666666666666666665432 24555555566666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALE 492 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 492 (798)
..|++++|.+.++++.+.. +.+..++..+...|...|++++|..+|+++.+... .+..++..+..+|...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655543 23444555555555555555555555555554421 134445555555555555555555
Q ss_pred HHHHHHH
Q 003749 493 VSKVMKS 499 (798)
Q Consensus 493 ~~~~m~~ 499 (798)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-12 Score=124.71 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=74.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec----ce
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH----GR 224 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~----g~ 224 (798)
.+.++|||+|||+.+++++|+++|++||.|.+|+++.| .+|+++|||||+|.+.++|.+|+..| |+..+. ||
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~~~r 169 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERC--GDGAFLLTTTPR 169 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHH--HHSCEESSSSCC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHh--cCCeEEecCCCc
Confidence 45679999999999999999999999999999999998 48999999999999999999999988 654443 99
Q ss_pred eeeeecccccc
Q 003749 225 VLTVKLDDGRR 235 (798)
Q Consensus 225 ~~~v~~~~~~~ 235 (798)
+|.|.++.+..
T Consensus 170 ~i~v~~~~~~~ 180 (261)
T 3sde_A 170 PVIVEPMEQFD 180 (261)
T ss_dssp BCEEEECCCEE
T ss_pred eEEEeeccccC
Confidence 99999987653
|
| >2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A | Back alignment and structure |
|---|
Probab=99.26 E-value=8.8e-12 Score=117.85 Aligned_cols=75 Identities=25% Similarity=0.503 Sum_probs=65.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCc-----------ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCC
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGP-----------IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDG 218 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~-----------v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 218 (798)
..++|||||||+++++++|+++|++||. |.++.+ ++++|||||+|.+.++|.+|+ .+ ||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~Al-~l--~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-------NQDKNFAFLEFRSVDETTQAM-AF--DG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-------ETTTTEEEEEESCSHHHHHHG-GG--TT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-------cCCCCEEEEEeCCHHHHHHHH-Hh--cC
Confidence 4579999999999999999999999954 444444 455999999999999999999 78 99
Q ss_pred eeecceeeeeeccccc
Q 003749 219 VEFHGRVLTVKLDDGR 234 (798)
Q Consensus 219 ~~~~g~~~~v~~~~~~ 234 (798)
..++|+.|+|.++...
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EEETTEEEEEECCCCC
T ss_pred CEEcCceEEEeCCCCC
Confidence 9999999999998665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=6e-10 Score=107.95 Aligned_cols=206 Identities=13% Similarity=-0.030 Sum_probs=159.5
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
++..+..+...|...|++++|+..|+++++....++...+..+..+|.+.|++++|+..|++.++.. +-+..+|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5677888899999999999999999999997533677888889999999999999999999999874 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNA-------IIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA--PIDIYHMMMDG 445 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~ 445 (798)
+|.+.|++++|+..|+++.+.... +. .+|..+..++...|++++|++.|++.++.+ +. +...|..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 999999999999999999987543 45 568888899999999999999999999864 33 35778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003749 446 YTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSML 512 (798)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 512 (798)
|...|+ .+++++...+.. +...|..+. ....+.+++|+..|++..+.. +.+..+...+
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 865543 445555544322 334443333 344567899999999999864 2244444443
|
| >2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.5e-12 Score=126.30 Aligned_cols=84 Identities=11% Similarity=0.224 Sum_probs=71.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccC-cceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFG-PIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
...++|||+|||+++++++|+++|++|| .|.+|+++.+ +. |+++|||||+|.+.++|.+|+..| ||..++|+.|.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~-~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSL-RF-NTSRRFAYIDVTSKEDARYCVEKL--NGLKIEGYTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHH--TTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeC-CC-CCcceEEEEEECCHHHHHHHHHHh--CCCEeCCcEEE
Confidence 4577999999999999999999999999 9999999987 33 889999999999999999999999 99999999999
Q ss_pred eecccccch
Q 003749 228 VKLDDGRRL 236 (798)
Q Consensus 228 v~~~~~~~~ 236 (798)
|.++.+...
T Consensus 191 v~~a~~~~~ 199 (292)
T 2ghp_A 191 TKVSNPLEK 199 (292)
T ss_dssp EEECCCC--
T ss_pred EEECCCCcc
Confidence 999987653
|
| >3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=123.35 Aligned_cols=75 Identities=17% Similarity=0.347 Sum_probs=64.8
Q ss_pred ccccceeecC--CCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeec---c
Q 003749 149 RQEGKIFVGN--LPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFH---G 223 (798)
Q Consensus 149 ~~~~~~~v~n--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~---g 223 (798)
.++.+||||| |++.+|+++|+++|++||.|++|.+..+ ||||||+|++.++|++|++.| ||..+. |
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-------kgfaFV~f~~~~~A~~Ai~~l--nG~~~~~~~g 86 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEVVDDLG 86 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-------CSEEEEEESSHHHHHHHHHHT--TTCEEECTTS
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHh--CCCccccccC
Confidence 3456999999 5889999999999999999999887643 899999999999999999999 999883 4
Q ss_pred e--eeeeeccc
Q 003749 224 R--VLTVKLDD 232 (798)
Q Consensus 224 ~--~~~v~~~~ 232 (798)
+ .+.|.+..
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 57777764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-09 Score=105.32 Aligned_cols=196 Identities=12% Similarity=0.002 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 408 (798)
.|...+..+...+.+.|++++|+..|++.++.....+...+..++.+|.+.|++++|++.|++..+.+.. +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567778888888888888888888888887653257777777888888888888888888888876433 667778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHH
Q 003749 409 YAQCQTRNMERAEALVRDMEEEGIDAPI-------DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPS---IISYGCLI 478 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li 478 (798)
.+|...|++++|++.+++.++.. +.+. .+|..+...+...|++++|+..|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888888888888888888764 2334 44666677777777777777777777664 233 34555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003749 479 NLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG 536 (798)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 536 (798)
.+|...| ..+++++...+ ..+...+..+. ....+.+++|+..|++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6664433 33344444332 12233333222 222344666666666666543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=115.37 Aligned_cols=226 Identities=11% Similarity=-0.042 Sum_probs=141.9
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCCHHHHHHHHH
Q 003749 309 RGDMHRARQTFENMRA-------RGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE------GI-EMSLVTYSIIVG 374 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~l~~ 374 (798)
.|++++|+.+|++..+ ........++..+...|...|++++|+..|+++++. +- +....++..++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555444 221223556777888888888888888888887754 11 223557788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCCChhhHH
Q 003749 375 GFAKMGNAEAADHWFEEAKERH-------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE------G-IDAPIDIYH 440 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~ 440 (798)
.|...|++++|++.|+++.... ......++..+..+|...|++++|.+.++++.+. + ......++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8888888888888888876541 1224567777888888888888888888887764 1 112345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-------CCCc-CHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHCCCCCCH
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKEC-------GFSP-SIISYGCLINLYTKIGKVSK------ALEVSKVMKSSGIKHNM 506 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~g~~~~------A~~~~~~m~~~~~~~~~ 506 (798)
.+..+|...|++++|+.+|++..+. ...+ ....|..+...+...+.... +...++.+.. ......
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 8888888888888888888887753 1111 22334334333333333222 2222221111 111234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 507 KTYSMLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 507 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.++..+...|...|++++|..+|++.++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777888888999999999999887653
|
| >3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=100.35 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=56.9
Q ss_pred HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccccc
Q 003749 166 HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235 (798)
Q Consensus 166 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~~ 235 (798)
++|++.|++||.|.+|.|.++ . ++||+||+|.+.++|.+|++.| ||..++||.|+|.++....
T Consensus 32 edl~~~f~kfG~V~~v~i~~~-~----~~G~~fV~f~~~e~A~~Ai~~l--nG~~f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKN-S----AQGNVYVKCPSIAAAIAAVNAL--HGRWFAGKMITAAYVPLPT 94 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTT-C----TTCCEEEECSSHHHHHHHHHHH--TTCEETTEECEEEEECHHH
T ss_pred HHHHHHHhccCCEEEEEEecC-C----CcEEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEEcHHH
Confidence 478999999999999999765 1 4899999999999999999999 9999999999999986553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=114.53 Aligned_cols=228 Identities=12% Similarity=0.051 Sum_probs=160.3
Q ss_pred HccCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-CCCChhhHHHH
Q 003749 342 AVGRDMEEALSCVRKMKEE-------GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER------H-ATLNAIIYGNI 407 (798)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l 407 (798)
...|++++|+.+|++.++. ..+....++..++..|...|++++|+..|+++... + ......++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777776552 22234678999999999999999999999998764 1 12346688889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCc-CHHH
Q 003749 408 IYAQCQTRNMERAEALVRDMEEEG-------IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC------GFSP-SIIS 473 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~ 473 (798)
..+|...|++++|.+.++++.+.. .+....++..+...|...|++++|+.+|++..+. +..+ ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999988751 1233667889999999999999999999999875 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCC
Q 003749 474 YGCLINLYTKIGKVSKALEVSKVMKSS-------GIKH-NMKTYSMLINGFLKLKD------WANVFAVFEDVMRDGLKP 539 (798)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~g~~~ 539 (798)
+..+..+|...|++++|+.+++++.+. ...+ ....|..+...+...+. +..+...++..... ...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998763 1111 22233333333333322 22232222222111 111
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 003749 540 DVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (798)
Q Consensus 540 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 570 (798)
...++..+..+|...|++++|..+|++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-08 Score=102.29 Aligned_cols=217 Identities=8% Similarity=0.033 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG--DMHRARQTFENMRARGIEPTLHVYTNLIHAY 341 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 341 (798)
++|++.+++++..||. +...|+.--.++...| ++++++++++.++..+ +-+..+|+.-..++
T Consensus 50 ~~aL~~t~~~L~~nP~---------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL 113 (306)
T 3dra_A 50 ERALHITELGINELAS---------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcH---------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHH
Confidence 5788888888888887 4445555556666666 8888888888888764 33555666666665
Q ss_pred ----Hcc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 342 ----AVG---RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE--AADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 342 ----~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
.+. +++++++.+++++++.. +-+..+|+.-.-.+.+.|.++ +++++++++++.+.. |..+|.....++.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 555 67888888888888764 337778888777777788777 888888888877554 7777777666666
Q ss_pred hcCC------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCcCHHHHHHHHHHHHH
Q 003749 413 QTRN------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEK-CLIVFERLKECG--FSPSIISYGCLINLYTK 483 (798)
Q Consensus 413 ~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~ 483 (798)
+.+. ++++++.+++++... +.|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+.++|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 6665 677777777777664 4566777777777766666333 334444444322 12255666666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 003749 484 IGKVSKALEVSKVMKS 499 (798)
Q Consensus 484 ~g~~~~A~~~~~~m~~ 499 (798)
.|+.++|+++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6777777777766664
|
| >2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-11 Score=89.76 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=62.3
Q ss_pred ccccceeecCCC----ccCch----HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCee
Q 003749 149 RQEGKIFVGNLP----NWIKK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVE 220 (798)
Q Consensus 149 ~~~~~~~v~nl~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 220 (798)
++..+|+|.-.+ .+.-+ .+|.+.|++||.|..++++.| .+||+|.+.++|.+|++ | ||..
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---------~~fVtF~d~~sAlaAi~-m--nG~~ 72 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---------KMWVTFLEGSSALNVLS-L--NGKE 72 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---------SEEEEESSHHHHHHGGG-G--TTCE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---------CEEEEECChHHHHHHHh-c--CCeE
Confidence 345688887765 22333 478999999999999999987 38999999999999998 8 9999
Q ss_pred ecceeeeeeccccc
Q 003749 221 FHGRVLTVKLDDGR 234 (798)
Q Consensus 221 ~~g~~~~v~~~~~~ 234 (798)
+.||.|+|+++++.
T Consensus 73 v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 73 LLNRTITIALKSPS 86 (91)
T ss_dssp ETTEEEEEEECCCS
T ss_pred eCCeEEEEEeCCCC
Confidence 99999999998765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-09 Score=108.67 Aligned_cols=160 Identities=13% Similarity=-0.021 Sum_probs=73.7
Q ss_pred HHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C----hhhHHHHHH
Q 003749 340 AYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNIIY 409 (798)
Q Consensus 340 ~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~ 409 (798)
.|...|++++|+..|++..+. |-.. ...+|+.+..+|.+.|++++|+..|++.+...... + ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666555432 1111 13455666666666666666666666554421100 0 123444445
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHH
Q 003749 410 AQCQT-RNMERAEALVRDMEEEGIDA-P----IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI------ISYGCL 477 (798)
Q Consensus 410 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 477 (798)
+|... |++++|++.|++.++..... + ..+++.+...|...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555544321000 0 123444455555555555555555555443221111 133444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 003749 478 INLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~ 499 (798)
..++...|++++|+..|++..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-08 Score=96.83 Aligned_cols=222 Identities=6% Similarity=-0.047 Sum_probs=164.9
Q ss_pred HcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc-
Q 003749 308 RRGD-MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGF----AKM- 379 (798)
Q Consensus 308 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~- 379 (798)
+.|. .++|+.+++.++..+ +-+..+|+.--.++...| ++++++++++.++..+.. +..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 4444 468999999999874 335567888888888888 999999999999887533 667777766666 555
Q ss_pred --CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----
Q 003749 380 --GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME--RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN---- 451 (798)
Q Consensus 380 --g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---- 451 (798)
+++++++++++++.+.+.. |..+|..-..++.+.|.++ ++++.++++++.+ ..+...|+.-.......+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 7889999999999887654 7888888888888888887 8888888888876 4577788877777777766
Q ss_pred --HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 452 --EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSK-ALEVSKVMKSSG--IKHNMKTYSMLINGFLKLKDWANVF 526 (798)
Q Consensus 452 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~ 526 (798)
++++++.++++...... |...|+.+...+.+.|+..+ +.++..++.+.+ -..+...+..+.++|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 77888888888776544 77788877777777776433 444555554322 1235667777777777777777777
Q ss_pred HHHHHHHH
Q 003749 527 AVFEDVMR 534 (798)
Q Consensus 527 ~~~~~~~~ 534 (798)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-07 Score=99.57 Aligned_cols=369 Identities=11% Similarity=0.012 Sum_probs=183.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHH----hcCCH
Q 003749 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRD-MEEALSCVRKMKEE-GIE-MSLVTYSIIVGGFA----KMGNA 382 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~-g~~-~~~~~~~~l~~~~~----~~g~~ 382 (798)
|+++.+..+|++.+.. .|++..|...+....+.++ .+....+|+..+.. |.. .+...|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888888888875 5688888888877777663 35566777777654 322 25677777776654 24567
Q ss_pred HHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 383 EAADHWFEEAKERHATLNAI-IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (798)
+.+.++|++++... ..+.. .|.... .+.+..+...+..++.+.. ..+..|..++.+
T Consensus 106 ~~vR~iy~rAL~~P-~~~~~~lw~~Y~-~fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTP-MGSLSELWKDFE-NFELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSC-CTTHHHHHHHHH-HHHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh-hhhHHHHHHHHH-HHHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHH
Confidence 78888888887642 11211 111111 1111111111222221111 123333434433
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 462 LKECGFSPSIISYGCLINLYTKIG--K-----VSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 462 ~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
+...--..+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.+.|..+|++...
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 332100012234444443322110 0 233455666665532 33455566666666666666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 535 DGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTF 614 (798)
Q Consensus 535 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 614 (798)
. +. +...|.. |....+.++. ++.+...-.. ...+.+. .. . ......+|
T Consensus 242 ~-P~-~~~l~~~----y~~~~e~~~~---~~~l~~~~~~----------------~~~~~~~-----~~-~-~~~~~~lw 289 (493)
T 2uy1_A 242 M-SD-GMFLSLY----YGLVMDEEAV---YGDLKRKYSM----------------GEAESAE-----KV-F-SKELDLLR 289 (493)
T ss_dssp H-CC-SSHHHHH----HHHHTTCTHH---HHHHHHHTC--------------------------------C-HHHHHHHH
T ss_pred C-CC-cHHHHHH----HHhhcchhHH---HHHHHHHHHh----------------hccchhh-----hh-c-ccccHHHH
Confidence 5 22 2222211 1111111111 1111110000 0000000 00 0 00012445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 615 NALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG-DTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693 (798)
Q Consensus 615 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 693 (798)
...+..+.+.+..+.|..+|+++ ... ..+...|...+..-...+ +.+.|..+|+..++.-.. +...+...++...+
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 55555555666777777777777 221 123344433222222223 577788888877765322 34455556666677
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 694 SGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.|+.+.|..+|+++. .....|...+..=...|+.+.+..+++++.+
T Consensus 367 ~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 367 IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888888887762 2466777777666667888877777777664
|
| >1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=94.65 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=71.3
Q ss_pred hhcccccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCC-hhHHHHHHHhcccCCeeecc
Q 003749 146 TEFRQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG-PAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 146 ~~~~~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~~~~~~~~~~g 223 (798)
.....++.|||+||+.+ +++++|+++|++||.|.+|.++++ .-.|||.|.+ ..+|..|++.+..++..|+|
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-------AKEGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 34567789999999999 999999999999999999999988 4469999999 79999999998556889999
Q ss_pred eeeeeeccccc
Q 003749 224 RVLTVKLDDGR 234 (798)
Q Consensus 224 ~~~~v~~~~~~ 234 (798)
..+++++..+.
T Consensus 86 ~~~~~evL~Ge 96 (121)
T 1owx_A 86 KEVTWEVLEGE 96 (121)
T ss_dssp SSEEEEECCHH
T ss_pred cEEEEEECCCH
Confidence 98888765433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.8e-09 Score=103.36 Aligned_cols=186 Identities=12% Similarity=0.017 Sum_probs=121.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT---LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGI--EMSLVTY 369 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~ 369 (798)
+...+..+...+.+.|++++|+..|+.+++.. +.+ ...+..+..+|.+.|++++|+..|++.++... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 56667778888899999999999999998873 223 56788888999999999999999999988632 1235567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 003749 370 SIIVGGFAK--------MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHM 441 (798)
Q Consensus 370 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 441 (798)
..+..++.+ .|++++|+..|++++..... +......+... ..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 788888888 89999999999998876432 33333221110 000000 0111445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 003749 442 MMDGYTIIGNEEKCLIVFERLKECGFSP--SIISYGCLINLYTKI----------GKVSKALEVSKVMKSS 500 (798)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 500 (798)
+...|...|++++|+..|+++++..... ....+..+..+|... |++++|+..|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5566666666666666666666542211 123455555566544 6666777777666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-07 Score=98.96 Aligned_cols=384 Identities=9% Similarity=0.034 Sum_probs=206.7
Q ss_pred cC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH
Q 003749 309 RG-DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAAD 386 (798)
Q Consensus 309 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~ 386 (798)
.| +++.|+.+|+++... -|. |+++.+..+|++.+.. .|+...|...+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377788888887764 222 7899999999998874 4688899888888777764 45677
Q ss_pred HHHHHHHhc-CC-CCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 003749 387 HWFEEAKER-HA-TLNAIIYGNIIYAQC----QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFE 460 (798)
Q Consensus 387 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (798)
.+|+.+... |. ..+...|...+..+. ..++.+.+.++|++.+......-...|...... ....+...+..++.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHH
Confidence 788877653 32 235566666665543 245677788888888763211111112211111 11111112222221
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHH
Q 003749 461 RLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLK--D-----WANVFAVFEDVM 533 (798)
Q Consensus 461 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~ 533 (798)
+ .. ..+..|..+++.+...--..+...|...++.-...+ - .+.+..+|++++
T Consensus 148 ~-------------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 148 D-------------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp H-------------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred H-------------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 1 11 123334444433332100012334444333322110 0 234555666666
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003749 534 RDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHT 613 (798)
Q Consensus 534 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 613 (798)
..... +...|...+..+.+.|+.++|..+|++.... |....+.. .|....+.++ +++.+.+
T Consensus 207 ~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~--------- 267 (493)
T 2uy1_A 207 DSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKR--------- 267 (493)
T ss_dssp HHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHH---------
T ss_pred HcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHH---------
Confidence 54332 4556666666666666677777777666665 22221111 1211111111 1111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693 (798)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 693 (798)
.+.. ...+.+. + ... ......|...+..+.+.++.+.|..+|+++ ... ..+..+|......-..
T Consensus 268 ------~~~~-~~~~~~~-----~-~~~-~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 268 ------KYSM-GEAESAE-----K-VFS-KELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp ------HTC-----------------CH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH
T ss_pred ------HHHh-hccchhh-----h-hcc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH
Confidence 1000 0000000 0 000 011245666777777788899999999999 322 2355566544433334
Q ss_pred cC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCcccccc
Q 003749 694 SG-RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQVRFS 772 (798)
Q Consensus 694 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~a~~ 772 (798)
.+ +.+.|..+|+...+.- +.+...|...++...+.|+.+.|..+|+++. -....|...+.--...|+.+.+..
T Consensus 332 ~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 44 6999999999998753 4456677778888888999999999999872 246678888877777888877766
Q ss_pred c
Q 003749 773 I 773 (798)
Q Consensus 773 ~ 773 (798)
+
T Consensus 406 v 406 (493)
T 2uy1_A 406 L 406 (493)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-09 Score=105.72 Aligned_cols=199 Identities=10% Similarity=0.010 Sum_probs=146.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRAR----GIEP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MS----LVT 368 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~ 368 (798)
|...+..|...|++++|++.|++..+. |..+ ...+|+.+..+|.+.|++++|+..|++.++.... .+ ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333456678899999999999988764 2111 1458899999999999999999999998763110 01 457
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------
Q 003749 369 YSIIVGGFAKM-GNAEAADHWFEEAKERHATL-N----AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI------ 436 (798)
Q Consensus 369 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~------ 436 (798)
++.+...|... |++++|+..|++..+..... + ..++..+..+|.+.|++++|++.|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88999999996 99999999999988752211 1 356888999999999999999999999986533222
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 003749 437 DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSI------ISYGCLINLYT--KIGKVSKALEVSKVMKS 499 (798)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 499 (798)
..|..+..+|...|++++|+..|++..+.. |+. ..+..++..|. ..+++++|+..|+++..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 157788899999999999999999987642 221 12334445553 34567777777766543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-08 Score=96.56 Aligned_cols=176 Identities=13% Similarity=0.066 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003749 314 RARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG----NAEAADHWF 389 (798)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 389 (798)
+|++.|++..+.| +...+..|...|...+++++|+.+|++..+.| +...+..|..+|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556666666654 56666666667766777777777777776654 55666666666666 5 667777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 003749 390 EEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEGID-APIDIYHMMMDGYTI----IGNEEKCLIVFE 460 (798)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 460 (798)
++..+.+ +..++..|..+|.. .+++++|++.|++..+.+.. .+...+..|..+|.. .++.++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7666543 45566666666655 56666666666666665411 014556666666665 556666666666
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 003749 461 RLKECGFSPSIISYGCLINLYTKI-G-----KVSKALEVSKVMKSSG 501 (798)
Q Consensus 461 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 501 (798)
+..+.+ .+...+..|..+|... | +.++|+..|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665541 1334455555555443 2 5666666666665544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.1e-09 Score=98.53 Aligned_cols=188 Identities=11% Similarity=-0.033 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPT-LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
+......+.+.|++++|+..|+++++. .|+ ...|... ....- .......+..+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcch--------------hhhhHHHHHHHHHHHH
Confidence 344455667778888888888887776 222 2233330 00000 0001112223555566
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--HHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN--EEKC 455 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~A 455 (798)
+.|++++|+..|++.++.+.. +..++..+..+|...|++++|++.|++.++.. +.+..+|..+..+|...|+ .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666666666666555322 45555666666666666666666666666553 3345555556555544432 2333
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003749 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLI 513 (798)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 513 (798)
...+.+... ..+....+..+..++...|++++|+..|++.++. .|+......+.
T Consensus 144 ~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 144 ETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 444444332 1222223334445555566677777777766653 45554444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-08 Score=101.14 Aligned_cols=213 Identities=6% Similarity=-0.055 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CChhh
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT--LNAII 403 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 403 (798)
.+...+..+...+.+.|++++|+..|+++++.. +-+ ...+..++.+|.+.|++++|+..|++++..... ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677778888888999999999999988863 223 677888888999999999999999998886432 22456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 003749 404 YGNIIYAQCQ--------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYG 475 (798)
Q Consensus 404 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 475 (798)
+..+..++.. .|++++|++.|+++++.. +.+......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 7777888888 888899999888888764 222222222211 1111110 112356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC--H
Q 003749 476 CLINLYTKIGKVSKALEVSKVMKSSGIKH--NMKTYSMLINGFLKL----------KDWANVFAVFEDVMRDGLKPD--V 541 (798)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~g~~~~--~ 541 (798)
.+..+|.+.|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+..+... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 77889999999999999999998863221 245677788888866 899999999999998754422 2
Q ss_pred HHHHHHHHHHHcCCChHHHH
Q 003749 542 VLYNNIIRAFCGMGNMDRAI 561 (798)
Q Consensus 542 ~~~~~li~~~~~~g~~~~A~ 561 (798)
.....+...+...++++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 34555556666666555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=97.25 Aligned_cols=190 Identities=12% Similarity=0.083 Sum_probs=128.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS-LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
.+......+.+.|++++|+..|++.++.. |+ ...|... ...... .........+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~~--------------~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKNS--------------EISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTTS--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcchh--------------hhhHHHHHHHHHHH
Confidence 34444555667777777777777776642 22 2222110 011100 00112234488899
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC--HHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK--VSK 489 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~ 489 (798)
.+.|++++|+..|++.++.. +.+..++..+..+|...|++++|+..|++.++.... +..+|..+..+|...|+ .+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999985 557889999999999999999999999999987543 67889899888876654 445
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 490 ALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (798)
Q Consensus 490 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 549 (798)
+...++++.. ..+....+..+..++...|++++|+..|++.++. .|+......+.+
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6666666543 2222334445566777789999999999999875 556555555444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-08 Score=88.56 Aligned_cols=130 Identities=19% Similarity=0.199 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.|..+...|...|++++|+.+|+++.+.+ ..+...+..+...+...|++++|+.+|+++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34556666777777777777777776653 3355666666677777777777777777776653 235556666666677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+.|++++|+.+|+++..... .+..++..++.++.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777776665532 24555556666666666666666666665543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-08 Score=93.47 Aligned_cols=178 Identities=13% Similarity=0.045 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
.+|.+.|.++.+.. +...+..|...|...|++++|+..|++..+.| +...+..|...|..
T Consensus 3 ~eA~~~~~~aa~~g-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-----------------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHCC-----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 35667777776542 56677888999999999999999999999986 77888999999988
Q ss_pred cC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh-
Q 003749 344 GR----DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHAT-LNAIIYGNIIYAQCQ- 413 (798)
Q Consensus 344 ~g----~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~- 413 (798)
+ ++++|+.+|++..+.| +...+..|..+|.. .+++++|+++|++..+.+.. .+..++..|..+|..
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 7 8999999999999875 78899999999988 89999999999999987532 126888899999998
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 003749 414 ---TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-G-----NEEKCLIVFERLKECGF 467 (798)
Q Consensus 414 ---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 467 (798)
.+++++|++.|++..+. ..+...+..|..+|... | +.++|+.+|++..+.|.
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999987 23556788888888754 3 89999999999988763
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-09 Score=121.07 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=68.6
Q ss_pred HcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 308 RRGDMHRARQTFENMR--------ARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
..|++++|++.|+++. +.. ..+...+..+..+|.+.|++++|+..|+++++.+ +.+...|..+..+|.+.
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 3444555555555544 221 2233444444444555555555555555544432 12344444444455555
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVF 459 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (798)
|++++|++.|+++.+.+.. +...+..+..+|.+.|++++ ++.|++.++.+ +.+...|..+..+|...|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555554444222 34444444444444444444 44444444432 223344444444444444444444444
Q ss_pred HHHHH
Q 003749 460 ERLKE 464 (798)
Q Consensus 460 ~~~~~ 464 (798)
++..+
T Consensus 558 ~~al~ 562 (681)
T 2pzi_A 558 DEVPP 562 (681)
T ss_dssp HTSCT
T ss_pred Hhhcc
Confidence 44433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-08 Score=87.04 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 613 TFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACC 692 (798)
Q Consensus 613 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 692 (798)
.|..+...+...|++++|..+++++.+.. ..+...+..++..+...|++++|..+|+++.+.+.. +...+..+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34555566666677777777776666543 234556666666777777777777777777665432 5566667777777
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 693 KSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
..|++++|..+++++.... +.+...+..++.++.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777776654 345667777777777777777777777777653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.99 E-value=6e-08 Score=95.50 Aligned_cols=178 Identities=14% Similarity=0.111 Sum_probs=88.7
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 560 AIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGC-IPTVHTFNALILGLVEKRQMEKAIEILDEMT 638 (798)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 638 (798)
|+..|++....+ ..+...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 12233334455555556666666666665544332 1144455555556666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 639 LAGISP-----NEHTYTTIMHG--YASLG--DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 639 ~~~~~p-----~~~t~~~li~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
+. .+ +..+...|+.+ ....| ++++|..+|+++.+.. |+..+...|+.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 23334444433 22222 5666666666655432 3322333333356666666666666664443
Q ss_pred C-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 710 Q-----K----IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 710 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
. + -+.|..++..+|......|+ +|.++++++++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 0 03345555455545555555 56666666665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=6e-08 Score=95.51 Aligned_cols=144 Identities=9% Similarity=0.024 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
|+..|++....+ ..+..++..+..++...|++++|++++.+.+..+. .-+...+..++.+|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555544432 22333344555555555555555555555544331 1234444455555555555555555555554
Q ss_pred HCCCCc-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 464 ECGFSP-----SIISYGCLINL--YTKIG--KVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 464 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
+. .+ +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 22 12222333322 12122 555555555555433 2232222333335555555555555555443
|
| >1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.2e-10 Score=84.77 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=62.8
Q ss_pred hcccccceeecCCCcc------Cch---HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 147 EFRQEGKIFVGNLPNW------IKK---HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~------~~~---~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
..++..+|+|.-++.. .++ .+|.+.|++||.|..++++.| + +||+|.+.++|.+||+ | |
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~--~fVtF~d~~sAl~AI~-l--d 78 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------Q--MLVTFADSHSALSVLD-V--D 78 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------E--EEEECSCSHHHHHHHH-G--G
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------c--EEEEEcChHHHHHHHh-c--C
Confidence 3456679999887632 232 368899999999999999988 2 9999999999999998 8 9
Q ss_pred Ceeecceeeeeecccc
Q 003749 218 GVEFHGRVLTVKLDDG 233 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~ 233 (798)
|..+.||.|+|++..+
T Consensus 79 G~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 79 GMKVKGRAVKISGPSS 94 (95)
T ss_dssp GSEETTEEEEEECCCC
T ss_pred CeeeCCeEEEEeccCC
Confidence 9999999999987643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.4e-09 Score=117.51 Aligned_cols=174 Identities=7% Similarity=-0.004 Sum_probs=137.6
Q ss_pred HcCCChHHHHHHHHHHH--------HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 552 CGMGNMDRAIHIVKEMQ--------KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVE 623 (798)
Q Consensus 552 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 623 (798)
...|++++|+..|++.. .... .+...+..+..+|.+.|++++|+..|+++.+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67788888888888887 4332 25667778888888999999999999988876544 67888888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003749 624 KRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAV 703 (798)
Q Consensus 624 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (798)
.|++++|+..|++.++.. +-+...|..+..+|.+.|++++ ++.|+++++.+.. +...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988764 3456788888889999999999 9999999887654 677888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003749 704 TKEMSAQKIPRNTFVYNILIDGWARRGD 731 (798)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (798)
|+++.+.+ +.+...|..++.++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99888765 3446677788888766554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=95.30 Aligned_cols=82 Identities=7% Similarity=-0.059 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003749 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (798)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 449 (798)
..+...|.+.|++++|++.|+++++.+.. +..+|..+..+|.+.|++++|+..|++.++.+ +.+..+|..+...|.+.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444444444444444444444433221 33344444444444444444444444444332 22233344444444444
Q ss_pred CCHH
Q 003749 450 GNEE 453 (798)
Q Consensus 450 g~~~ 453 (798)
|+++
T Consensus 113 ~~~~ 116 (150)
T 4ga2_A 113 DVTD 116 (150)
T ss_dssp CSSS
T ss_pred CChH
Confidence 4433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.8e-08 Score=93.06 Aligned_cols=187 Identities=14% Similarity=0.020 Sum_probs=128.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---HHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEP--TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTY 369 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~ 369 (798)
+...+..+...+.+.|++++|+..|+++++..... ....+..+..+|.+.|++++|+..|+++++.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 34556677788999999999999999999863111 1357888889999999999999999999986422 22 255
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 370 SIIVGGFAK------------------MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 370 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
..+..++.+ .|++++|+..|+++++.... +..++..+... ..+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH---
Confidence 566666654 56777888888877765322 23232221110 00111111
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003749 432 IDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP--SIISYGCLINLYTKIGKVSKALEVSKVMKSSG 501 (798)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 501 (798)
.....+...|.+.|++++|+..|+++++..... ....+..+..+|.+.|+.++|++.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112456788899999999999999998863221 12467888999999999999999999888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.8e-09 Score=91.92 Aligned_cols=134 Identities=11% Similarity=0.030 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
+.|+..|.+++..++. +...+..+...|.+.|++++|++.|+++++.. +.+..+|..+..+|.+
T Consensus 14 e~ai~~~~~a~~~~p~---------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQ---------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYEL 77 (150)
T ss_dssp HHHHHHHHHHSCSHHH---------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 5666666666555443 23344455666666666666666666666653 3355566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW-FEEAKERHATLNAIIYGNIIYAQCQTR 415 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (798)
.|++++|+..|++.++.. +-+..+|..+...|.+.|++++|.+. ++++.+..+. +..+|......+...|
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 666666666666666643 22455666666666666666554443 3555554322 4444544444444444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-07 Score=91.41 Aligned_cols=190 Identities=8% Similarity=-0.056 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hhHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA--IIYG 405 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 405 (798)
+...+..+...+.+.|++++|+..|+++++..... ....+..++.+|.+.|++++|+..|+++.+....... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677788899999999999999999863221 1457888999999999999999999999987544221 2555
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003749 406 NIIYAQCQ------------------TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGF 467 (798)
Q Consensus 406 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (798)
.+..++.+ .|++++|...|+++++.. +-+..++..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 56666654 456677777777776653 22222222111100 000111
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003749 468 SPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHN--MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK 538 (798)
Q Consensus 468 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 538 (798)
......+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|++++|...++.+...++.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123567889999999999999999998632111 246788899999999999999999999887543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=101.81 Aligned_cols=164 Identities=12% Similarity=0.016 Sum_probs=86.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (798)
.|++++|.+++++..+.. ... .+...+++++|..+|+++ +..|...|++++|+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466778888888777642 111 011146777777776654 3456677788888777
Q ss_pred HHHHHhcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 003749 389 FEEAKERHATL-----NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGI---DA--PIDIYHMMMDGYTIIGNEEKCLIV 458 (798)
Q Consensus 389 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~ 458 (798)
|.++.+..... -..+|..+..+|.+.|++++|++.|++.++... .+ ...+++.+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77765531110 123555666666666777776666666554210 00 12344455555555 555555555
Q ss_pred HHHHHHCCCCc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 459 FERLKECGFSP-----SIISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 459 ~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
|++..+..... ...+++.+..+|.+.|++++|+..|++..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55554321000 02334444455555555555555554444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-07 Score=93.42 Aligned_cols=169 Identities=7% Similarity=0.041 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRG-DMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 342 (798)
++|++.+++++..||. +...|+.--.++...| ++++++++++.++... +-+..+|+....++.
T Consensus 71 e~AL~lt~~~L~~nP~---------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA---------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch---------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 6788888888888887 4455555555666667 5889999999988875 446777888887777
Q ss_pred cc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 343 VG-R-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAE--------AADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 343 ~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
+. + ++++++++++++++.. +-|..+|+...-.+.+.|.++ ++++.++++++.++. |..+|+....++.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 76 6 8888999998888875 337888887777777766666 888888888887544 7778887777777
Q ss_pred hcCC-------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 413 QTRN-------MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 413 ~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
+.++ ++++++.+++++... +.|...|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7765 577777777777764 4566777766666655554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-08 Score=98.46 Aligned_cols=165 Identities=7% Similarity=-0.014 Sum_probs=120.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTY-SIIV 373 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~ 373 (798)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|+.+|+++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34456677788888999999999999988874 4466788888888889999999999988887653 344333 3333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCH
Q 003749 374 GGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNE 452 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~ 452 (798)
..+.+.++.++|+..|++...... .+...+..+..+|...|++++|++.|+++++..... +...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 346677778888888888877643 367778888888888888888888888888764221 145677777777777777
Q ss_pred HHHHHHHHHHH
Q 003749 453 EKCLIVFERLK 463 (798)
Q Consensus 453 ~~A~~~~~~~~ 463 (798)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=93.41 Aligned_cols=160 Identities=13% Similarity=0.068 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG-FA 377 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~ 377 (798)
+..+...+.+.|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|+..|+++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445555666666666666666655542 2345556666666666666666666666655542 133322222211 11
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-PIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
+.+...+|+..|++..+.+.. +...+..+..++...|++++|.+.|+++++..... +...+..+..+|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 212223345555555544222 44555555555555555555555555555543211 1234455555555555555555
Q ss_pred HHHHHH
Q 003749 457 IVFERL 462 (798)
Q Consensus 457 ~~~~~~ 462 (798)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-08 Score=98.43 Aligned_cols=168 Identities=5% Similarity=-0.044 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 003749 329 PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNII 408 (798)
Q Consensus 329 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 408 (798)
.+...+..+...+...|++++|+..|++.++.. +-+...+..++..|.+.|++++|+..|+++..... ..........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHH
Confidence 355667788888999999999999999999874 33788899999999999999999999999877643 1233333344
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCH
Q 003749 409 YAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTKIGKV 487 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 487 (798)
..+.+.++.++|.+.+++..+.. +.+...+..+...|...|++++|+..|.++.+..... +...+..++.+|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 45778888888999999988875 5567888999999999999999999999998864321 266788889999999998
Q ss_pred HHHHHHHHHHHH
Q 003749 488 SKALEVSKVMKS 499 (798)
Q Consensus 488 ~~A~~~~~~m~~ 499 (798)
++|...|++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-07 Score=89.36 Aligned_cols=175 Identities=7% Similarity=0.006 Sum_probs=137.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM-G-NAEA 384 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-g-~~~~ 384 (798)
..+..++|+++++.++..+ +-+..+|+..-..+...| ++++++.+++.++.... -+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 3445678999999999985 346667888888888888 59999999999998753 4888899888888887 7 8899
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 003749 385 ADHWFEEAKERHATLNAIIYGNIIYAQCQTRNME--------RAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN----- 451 (798)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~----- 451 (798)
++++++++++.+.. |..+|+.-..++.+.|.++ ++++.++++++.+ ..|..+|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 99999999988655 7888887777777766666 8888888888876 5578888888888877776
Q ss_pred --HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 003749 452 --EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKV 487 (798)
Q Consensus 452 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 487 (798)
++++++.++++...... |...|+.+-..+.+.|+.
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 67888888888776443 677777777767666653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-08 Score=92.40 Aligned_cols=162 Identities=7% Similarity=0.022 Sum_probs=105.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH-H
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA-Q 411 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 411 (798)
.+..+...+.+.|++++|+..|++.++.. +.+...+..+...|.+.|++++|+..|+++..... +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 45566677788888888888888877653 23677888888888888888888888888776543 43333322212 1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP-SIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 490 (798)
.+.+...+|.+.+++.++.. +.+...+..+..++...|++++|+..|+++.+....+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334666777766653 3356667777777777777777777777776654321 244666667777777777777
Q ss_pred HHHHHHHH
Q 003749 491 LEVSKVMK 498 (798)
Q Consensus 491 ~~~~~~m~ 498 (798)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-08 Score=101.39 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=112.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK-MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (798)
..|++++|.+++++..+.. ... +.+ .+++++|...|+++ +.+|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577888988888877641 111 122 57888888888875 34677889999999
Q ss_pred HHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHHcCCHHHHH
Q 003749 422 ALVRDMEEEGIDA-----PIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFS-PSIISYGCLINLYTKIGKVSKAL 491 (798)
Q Consensus 422 ~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~ 491 (798)
+.|.+..+..... -..+|+.+..+|...|++++|+..|++..+. |-. .-..+++.+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 8888776532100 1345667777777777777777777776543 100 012455556666666 6666666
Q ss_pred HHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CC-HHHHHHHHHHHHcCCChHHHH
Q 003749 492 EVSKVMKSSGIKH-----NMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLK----PD-VVLYNNIIRAFCGMGNMDRAI 561 (798)
Q Consensus 492 ~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~-~~~~~~li~~~~~~g~~~~A~ 561 (798)
..|++..+..... ...++..+...|.+.|++++|+..|++..+.... .. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666655421000 0234445555555556666665555555442100 00 113333444444445555555
Q ss_pred HHHHHHH
Q 003749 562 HIVKEMQ 568 (798)
Q Consensus 562 ~~~~~~~ 568 (798)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-08 Score=109.04 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003749 263 REWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (798)
Q Consensus 263 ~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 342 (798)
.++|...|++++..++. +...|..+...|.+.|++++|++.|++..+.. ..+...+..+..+|.
T Consensus 5 ~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQ---------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRW 68 (568)
T ss_dssp ----------------C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 38899999999988886 66778889999999999999999999999874 446788999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CChHH
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT---RNMER 419 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 419 (798)
..|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.|+++.+.+.. +..++..+..++... |++++
T Consensus 69 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHH
Confidence 9999999999999999874 336889999999999999999999999999887543 678888999999999 99999
Q ss_pred HHHHHHHHHHcC
Q 003749 420 AEALVRDMEEEG 431 (798)
Q Consensus 420 A~~~~~~m~~~~ 431 (798)
|.+.+++..+.+
T Consensus 147 A~~~~~~al~~~ 158 (568)
T 2vsy_A 147 LSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 999999998875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-08 Score=108.94 Aligned_cols=155 Identities=10% Similarity=-0.105 Sum_probs=121.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 309 RGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (798)
.|++++|++.|+++.+.. ..+...|..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999998874 4467889999999999999999999999999874 33688999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 003749 389 FEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII---GNEEKCLIVFERLKEC 465 (798)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 465 (798)
|++..+.+.. +...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+..+|... |+.++|.+.|++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999987543 68899999999999999999999999999875 45678899999999999 9999999999999887
Q ss_pred CC
Q 003749 466 GF 467 (798)
Q Consensus 466 ~~ 467 (798)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.4e-08 Score=82.78 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=74.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+.+.|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|+..|++.++.+ +.+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456667777777777777777777777764 4466677777777777777777777777777754 2256677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
|...|++++|++.|++.++.++. +..++..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 77777777777777777766432 44444433
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.5e-09 Score=99.52 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=63.1
Q ss_pred CchHHHHHHhcccCcceEEEEecCC---CCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccccchh
Q 003749 163 IKKHLVMEFFRQFGPIKNVILIKGY---NNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLK 237 (798)
Q Consensus 163 ~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~~~~ 237 (798)
-.+++|++.|++||.|.++.|.++. +.+|+++|++||+|.+.++|.+|+..| ||..++||.|.+.+.....+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l--~gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL--NGRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH--TTCBSSSSBCEEEECCHHHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh--cCceECCeEEEEEEcCHHHhh
Confidence 3457899999999999999998541 346689999999999999999999999 999999999999998655433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-07 Score=90.86 Aligned_cols=186 Identities=10% Similarity=-0.006 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHH-------HHHHHHcCChHHHHHHHHHHHHC-----------
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLM-------VNYYARRGDMHRARQTFENMRAR----------- 325 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~----------- 325 (798)
..|++.|.++++.+|. .+..|..+ ...+...++..+++..+.+....
T Consensus 23 ~~A~~~F~~a~~~dP~---------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 23 ARSLDLFTEITNYDES---------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHHHHHHHhChh---------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 8999999999999997 34444444 34444445555566555555542
Q ss_pred -CCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003749 326 -GIE--------PTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 326 -~~~--------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (798)
|.- .-...+..+..+|...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 100 002234556677888899999999988887653 333377777778888999999999888665431
Q ss_pred CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003749 397 ATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDIYHMMMDGYTIIGNEEKCLIVFERLKECG 466 (798)
Q Consensus 397 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (798)
... ...++..+..++.+.|++++|++.|++.......|. ...+..+..++.+.|+.++|..+|+++....
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 000 134677788888888888888888888875433232 3466777777888888888888888887753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.8e-06 Score=82.83 Aligned_cols=167 Identities=7% Similarity=-0.094 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHH---HHHHHHc-------CChHHHHHHHHHHHHCCCCCCHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLM---VNYYARR-------GDMHRARQTFENMRARGIEPTLHV 333 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~-------g~~~~A~~~~~~~~~~~~~~~~~~ 333 (798)
++|+..+++++..||.+. ..|+.- +...... ..+++++.+++.+.... +-+..+
T Consensus 47 ~eaL~~t~~~L~~nP~~y---------------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~a 110 (331)
T 3dss_A 47 ESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 110 (331)
T ss_dssp HHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHH
Confidence 579999999999999853 222221 1111111 12678999999998875 457778
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 334 ~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
|+.-..++.+.+ ++++++.+++++++... -|..+|+.-.-.+.+.|. ++++++.++++++.++. |..+|+....+
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 888888888888 48999999999998753 488899988888888888 68999999999988654 78888877766
Q ss_pred HHhc--------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003749 411 QCQT--------------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (798)
Q Consensus 411 ~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 449 (798)
+.+. +.++++++.+.+.+... +-|..+|+.+-..+.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6655 34667777777777664 44666666554444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.7e-07 Score=84.64 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.+..+...+...|++++|+..|+++. .++..+|..+...|.+.|++++|+..|++.++.. +.+...|..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34566778888999999999998774 4578888999999999999999999999988864 346788889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC---------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 378 KMGNAEAADHWFEEAKERHATL---------------NAIIYGNIIYAQCQTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 431 (798)
+.|++++|+..|+++.+..... ...++..+..+|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999988754321 12677778888888888888888888887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-07 Score=92.27 Aligned_cols=162 Identities=9% Similarity=-0.055 Sum_probs=76.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C----hhhHHHH
Q 003749 338 IHAYAVGRDMEEALSCVRKMKEEGI-EMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNI 407 (798)
Q Consensus 338 l~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l 407 (798)
+..+...|++++|..++++..+... .++ ...+..+...+...|++++|+..|+++....... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3444445555555555555444211 011 0112234444444455555555555554421111 1 1134555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----c-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHH
Q 003749 408 IYAQCQTRNMERAEALVRDMEE----E-GID-APIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSPS-IISYGC 476 (798)
Q Consensus 408 ~~~~~~~g~~~~A~~~~~~m~~----~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 476 (798)
..+|...|++++|++.|+++.+ . +.. ....++..+...|...|++++|+..+++..+. +.... ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5555555555555555555442 1 101 11234555666666666666666666655432 11111 455666
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHH
Q 003749 477 LINLYTKIGK-VSKALEVSKVMKS 499 (798)
Q Consensus 477 li~~~~~~g~-~~~A~~~~~~m~~ 499 (798)
+..+|.+.|+ +++|++.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6666666663 4666666666543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=4e-07 Score=78.12 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=63.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
.+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|+..|+++++.+.. +..+|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 45556666777777777777777766653 235666677777777777777777777776665433 5566666666666
Q ss_pred hcCChHHHHHHHHHHHHcC
Q 003749 413 QTRNMERAEALVRDMEEEG 431 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~ 431 (798)
..|++++|++.|++.++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 6666666666666666653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.4e-07 Score=89.70 Aligned_cols=127 Identities=9% Similarity=-0.021 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC----hhhHH
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKERHATL-N----AIIYGNIIYAQCQTRNMERAEALVRDMEEE--GIDAP----IDIYH 440 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~~~ 440 (798)
++..+...|++++|+..|+++....... + ..+++.+..+|...|++++|.+.|++..+. ....+ ..+++
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 3344444455555555555444321110 0 224444555555555555555555544421 00010 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECG----FSP-SIISYGCLINLYTKIGKVSKA-LEVSKVMK 498 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 498 (798)
.+...|...|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55555666666666666655554321 000 144566666666666666666 55555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=8.8e-07 Score=84.24 Aligned_cols=126 Identities=15% Similarity=0.080 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 614 FNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCK 693 (798)
Q Consensus 614 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 693 (798)
+..+...+...|++++|+..|++.. .++...|..+..+|...|++++|++.|+++++.... +...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 3444555666777777777776653 346667777777777777777777777777766432 56667777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 694 SGRMQSALAVTKEMSAQKIPRNT----------------FVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 694 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
.|++++|...++++.+.. +.+. ..+..++.+|.+.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777776643 2222 56777777777778888888877777764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-05 Score=79.48 Aligned_cols=190 Identities=8% Similarity=-0.051 Sum_probs=136.7
Q ss_pred HHHcCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 306 YARRGDMH-RARQTFENMRARGIEPTLHVYTNLIHAYAVGRD----------MEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 306 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
..+.|.+. +|+.+++.++..+ +-+..+||.--..+...+. +++++.+++.++... +-+..+|+.-.-
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566665 8999999999874 3345567776666655444 688999999998875 348888998888
Q ss_pred HHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--
Q 003749 375 GFAKMGN--AEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN-MERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-- 449 (798)
Q Consensus 375 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-- 449 (798)
++.+.|+ +++++.+++++.+.+.. |..+|+.-..++...|. ++++++.++++++.+ +.|..+|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 8888884 89999999999988655 88888888888888888 588999999999876 55778888777766655
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHC
Q 003749 450 ------------GNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI-----------GKVSKALEVSKVMKSS 500 (798)
Q Consensus 450 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 500 (798)
+.++++++.+.+....... |..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777777765433 566665444444443 2355555555555553
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-06 Score=85.17 Aligned_cols=162 Identities=9% Similarity=-0.053 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hhhHH
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKERHAT-LN----AIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-P----IDIYH 440 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~----~~~~~ 440 (798)
..+..+.+.|++++|++++++....... ++ ...+..+...+...+++++|.+.|++..+..... + ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466778888888888888888764321 11 1122335555666677777777777777632221 1 22466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKEC-----GFSP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS----GIKHN-MKTY 509 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~ 509 (798)
.+...|...|++++|+..|++..+. +..+ ...+|..+..+|.+.|++++|+..+++..+. +.... ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 6667777777777777777666531 1111 1224555566666666666666665555431 11111 3344
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHH
Q 003749 510 SMLINGFLKLK-DWANVFAVFEDV 532 (798)
Q Consensus 510 ~~ll~~~~~~~-~~~~a~~~~~~~ 532 (798)
..+..+|.+.| ++++|...|++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 44444444444 234554444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.4e-07 Score=80.71 Aligned_cols=129 Identities=16% Similarity=0.055 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..+..+...+...|++++|+..|++..+.. ..+..++..+..+|...|++++|+..|++.++.. +.+..+|..++.+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445667777777888888888888877763 3456677777777777788888888887777753 33566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYG--NIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
.+.|++++|+..|+++...... +...+. .++..+.+.|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777765332 333442 23333556666666666665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=84.31 Aligned_cols=96 Identities=10% Similarity=0.046 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|++.++.. +-+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 44455555555566666666666555553 3345555555555555555555555555555543 124455555555555
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 003749 378 KMGNAEAADHWFEEAKER 395 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~ 395 (798)
+.|++++|+..|+++.+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.1e-08 Score=99.15 Aligned_cols=132 Identities=14% Similarity=0.020 Sum_probs=87.5
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
+...|..+...|.+.|++++|+..|+++++..-... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677888899999999999999999998742211 356666666777777777777777776665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003749 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERA-EALVRDME 428 (798)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 428 (798)
. +.+...|..+..+|...|++++|+..|+++++.... +..++..+..++.+.|+.++| ..+++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 235666666666677777777777777666665332 455666666666666666665 33444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-06 Score=78.89 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
..+..+...+...|++++|...|++..+.. ..+...|..+..++...|++++|+..++++++.... +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 445556666777777777777777776653 345667777777778888888888888887776533 567777778888
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHH
Q 003749 692 CKSGRMQSALAVTKEMSAQKIPRNTFVYNILID--GWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~ 744 (798)
...|++++|...++++.+.. +.+...+..+.. .+...|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888877654 345555533333 36677888888888776543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-06 Score=87.12 Aligned_cols=164 Identities=8% Similarity=-0.096 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hhhH
Q 003749 370 SIIVGGFAKMGNAEAADHWFEEAKERHATLN-----AIIYGNIIYAQCQTRNMERAEALVRDMEEEGID---AP--IDIY 439 (798)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~~ 439 (798)
...+..+...|++++|++.+++..+...... ...+..+...+...|++++|++.+++..+.... .. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3344444555555555555554444321110 112333555566667777777777766643211 11 3366
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CHHH
Q 003749 440 HMMMDGYTIIGNEEKCLIVFERLKEC----GFSP--SIISYGCLINLYTKIGKVSKALEVSKVMKSSG----IKH-NMKT 508 (798)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~~ 508 (798)
+.+...|...|++++|+..|++..+. .... ...++..+..+|...|++++|+..+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 66777777777777777777766521 1111 11466666777777777777777776665421 111 1455
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHH
Q 003749 509 YSMLINGFLKLKDWANV-FAVFEDVM 533 (798)
Q Consensus 509 ~~~ll~~~~~~~~~~~a-~~~~~~~~ 533 (798)
|..+..+|.+.|++++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66666777777777777 55555544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-06 Score=74.06 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..|..+...|...|++++|+++|+++.+.. ..+..++..+...|.+.|++++|+.+|+++.+.. +.+..++..++..|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445556666666667777777666666553 3345566666666666666666666666666543 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
.+.|++++|+..|+++..... .+...+..+..++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 666666666666666655432 1333444443333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-07 Score=92.91 Aligned_cols=98 Identities=17% Similarity=0.048 Sum_probs=59.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445556666666666666666666666652 2355566666666666666666666666666543 2245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 003749 376 FAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~ 395 (798)
|.+.|++++|+..|+++.+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-07 Score=92.22 Aligned_cols=99 Identities=17% Similarity=0.063 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++.+.+. .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45667778888888888888888888888764 33778888888888888888888888888887643 36778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003749 410 AQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+|...|++++|++.|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4e-07 Score=80.66 Aligned_cols=95 Identities=13% Similarity=-0.039 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003749 368 TYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT 447 (798)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 447 (798)
.+..+...+.+.|++++|+..|+++...++. +...|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 4444555555555555555555555544322 44455555555555555555555555555443 223444445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003749 448 IIGNEEKCLIVFERLKE 464 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~ 464 (798)
..|++++|+..|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.7e-07 Score=86.46 Aligned_cols=189 Identities=9% Similarity=-0.078 Sum_probs=120.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHccCChHHHHHHHHHHHHc------------CCC-----
Q 003749 308 RRGDMHRARQTFENMRARGIEPTLHVYTNL-------IHAYAVGRDMEEALSCVRKMKEE------------GIE----- 363 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~A~~~~~~m~~~------------g~~----- 363 (798)
+.+++.+|++.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-++. |+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788889999999988874 4456677777 56666666666666666555441 100
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhh
Q 003749 364 ---MSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP--IDI 438 (798)
Q Consensus 364 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~ 438 (798)
--...+..+...+...|++++|.++|+.+...+. +......+...+.+.+++++|+..|+...... .+. ..+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0023345566777788888888888887766532 22266666677778888888888887544321 110 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003749 439 YHMMMDGYTIIGNEEKCLIVFERLKECGFSPS--IISYGCLINLYTKIGKVSKALEVSKVMKSS 500 (798)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (798)
+..+..++...|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66667777777777777777777764322132 234555666677777777777777777665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-07 Score=85.19 Aligned_cols=121 Identities=14% Similarity=0.027 Sum_probs=66.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC
Q 003749 307 ARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEE----GI-EMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l~~~~~~~g~ 381 (798)
...|++++|.++++.+... ......+++.+...|...|++++|+..|++.++. +. .....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755544332 1234556677777777777777777777776651 11 1123456666667777777
Q ss_pred HHHHHHHHHHHHhc---CC-C--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 382 AEAADHWFEEAKER---HA-T--LNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 382 ~~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
+++|+..|++.... .. . ....++..+..++...|++++|.+.+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777777665543 00 0 112334455555555555555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=6.1e-07 Score=79.53 Aligned_cols=99 Identities=9% Similarity=-0.056 Sum_probs=68.7
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...+..+...+.+.|++++|+..|+.++... +.+...|..+..+|...|++++|+..|++.++.. +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33445566677777777777777777777663 3466667777777777777777777777777653 225666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 003749 375 GFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+|...|++++|+..|+++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=74.84 Aligned_cols=118 Identities=12% Similarity=0.068 Sum_probs=75.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+...|++++|+..|+++.+.. ..+...+..+..+|...|++++|+..+++..+.. +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445566667777777777777777776653 3355666677777777777777777777776653 2246666666677
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (798)
|.+.|++++|+..|+++.+.... +...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 77777777777777766665322 45555555555555554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-06 Score=72.03 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (798)
...|..+...+...|++++|.++|+++.+... .+..++..+..++.+.|++++|..+++++.+.. +.+...+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34555566666666666666666666665532 245566666666666777777777766666543 3456666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003749 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKA 764 (798)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~ 764 (798)
|...|++++|...++++.+.. .-+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 777777777777777766542 22344555555544443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=75.58 Aligned_cols=118 Identities=12% Similarity=0.062 Sum_probs=77.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
+...|..+...+.+.|++++|+..|+++.+.. ..+..++..+..+|...|++++|+..|++..+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34556667777777777777777777777653 3356667777777777777777777777777653 235666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (798)
+|.+.|++++|+..|+++.+.... +...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777777777777777776665322 3444555555544433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.6e-07 Score=84.31 Aligned_cols=156 Identities=11% Similarity=-0.042 Sum_probs=92.4
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCC
Q 003749 342 AVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERH-----ATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 342 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~ 416 (798)
...|++++|.++++.+... ......++..+...|...|++++|+..|++....- ......++..+..+|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578888888865555432 22356778888888888899999988888876621 11234566667777777778
Q ss_pred hHHHHHHHHHHHHc----CCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHHcC
Q 003749 417 MERAEALVRDMEEE----GID--APIDIYHMMMDGYTIIGNEEKCLIVFERLKEC----GFSP-SIISYGCLINLYTKIG 485 (798)
Q Consensus 417 ~~~A~~~~~~m~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g 485 (798)
+++|.+.+++..+. +.. ....++..+...+...|++++|+..+++..+. +... -..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777766553 101 11234556666666667777776666665432 1000 0123345555566666
Q ss_pred CHHHHHHHHHHHH
Q 003749 486 KVSKALEVSKVMK 498 (798)
Q Consensus 486 ~~~~A~~~~~~m~ 498 (798)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666665555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-06 Score=80.97 Aligned_cols=117 Identities=10% Similarity=0.202 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHA-YA 342 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 342 (798)
+.|...|.+++..++. +...|..+...|...|++++|+..|+++.+.. +.+...+..+..+ |.
T Consensus 27 ~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQ---------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYY 90 (177)
T ss_dssp CCCCHHHHHHHHHCCS---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 8889999999988886 66778888899999999999999999998874 3467778888888 77
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003749 343 VGRDM--EEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA 397 (798)
Q Consensus 343 ~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 397 (798)
..|++ ++|+..|+++++.. +.+...+..++..|.+.|++++|+..|+++.+...
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88998 99999999998874 33678888899999999999999999999888743
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-06 Score=75.30 Aligned_cols=117 Identities=11% Similarity=-0.044 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...+.+.|++++|+..|++..+.. +.+..++..++.+|...|++++|+..|+++.+.... +..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 44456666666777777777777777766653 225666666666676777777777777766665322 4556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII 449 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 449 (798)
+|.+.|++++|.+.|++..+.. +.+...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666666543 22334444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=72.85 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
..+..+...+...|++++|...|+++.+.... +...+..+..+|...|++++|...+++..+.. +.+...+..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 45556666666677777777777776665432 56666667777777777777777777776653 44566677777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 003749 727 ARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 767 (798)
.+.|++++|.+.+++..+.. ..+...+..+...+.+.|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 77777777777777776642 22456666666676666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-07 Score=80.87 Aligned_cols=99 Identities=13% Similarity=-0.041 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++...+.. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 33455556666666677777777777666653 225666666666666777777777777766665332 4556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003749 410 AQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~ 430 (798)
+|...|++++|.+.|++.++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.7e-07 Score=81.46 Aligned_cols=119 Identities=8% Similarity=0.035 Sum_probs=50.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 003749 588 RAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG-YASLGDT--GK 664 (798)
Q Consensus 588 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~-~~~~g~~--~~ 664 (798)
..|++++|+..+++..+.... +...|..+...|...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 344445555555444443221 34444444444445555555555554444332 1233344444444 3344444 44
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 665 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 665 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
|..+|+++++.... +...+..+..+|...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 44444444443322 334444444444444444444444444444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5.9e-07 Score=79.11 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=77.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...+..+...+.+.|++++|+..|+++...+ +.+...|..+..+|.+.|++++|+..|++.++.+ +.+...|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3445667777888888888888888888774 4467778888888888888888888888888764 3366778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 003749 376 FAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~ 395 (798)
|...|++++|+..|+++...
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-06 Score=87.93 Aligned_cols=132 Identities=11% Similarity=-0.077 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 611 VHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN--------------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
...+..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..|+++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555666666667777777777776665431111 4678888888888888888888888888876
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEA-ADLMQQMKQ 744 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 744 (798)
.. +...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.|+.++| ..+++.|..
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 77888888888888889999988888888765 56777888888888888888887 456666653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-07 Score=86.22 Aligned_cols=86 Identities=7% Similarity=-0.054 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 003749 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYT 482 (798)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 482 (798)
++..+..+|.+.|++++|+..+++.++.. +.+..++..+..+|...|++++|+..|++..+.... +...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 44444444444455555555544444432 223444444444445555555555555444443211 3334444444444
Q ss_pred HcCCHHHH
Q 003749 483 KIGKVSKA 490 (798)
Q Consensus 483 ~~g~~~~A 490 (798)
..++.+++
T Consensus 168 ~~~~~~~~ 175 (198)
T 2fbn_A 168 KLKEARKK 175 (198)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 44433333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-06 Score=71.66 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
..|..+...+.+.|++++|+..|+++++.... +...|..+..+|.+.|++++|+..++++++.+ +.+...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45666667777777888888888777776543 66777777778888888888888888777765 45677777788888
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 003749 727 ARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~~ 745 (798)
...|++++|++.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888877763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.1e-07 Score=85.52 Aligned_cols=131 Identities=15% Similarity=-0.001 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPN---------------EHTYTTIMHGYASLGDTGKAFEYFTKLRNEG 676 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~ 676 (798)
..+..+...+...|++++|+..|++.++...... ...|..+..+|...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3445555566666677777776666665321111 2566777777777788888888777777764
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 003749 677 LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAA-DLMQQMKQ 744 (798)
Q Consensus 677 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 744 (798)
.. +...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|+.+++. ..+..|..
T Consensus 119 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33 56677777777777888888888777777654 456667777777777666666655 44555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=5e-06 Score=71.18 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345566667777777777777777777663 3456667777777777777777777777777653 22566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 003749 377 AKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~ 395 (798)
...|++++|+..|+++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-06 Score=71.46 Aligned_cols=108 Identities=8% Similarity=0.029 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--IPRN----TFVYN 720 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 720 (798)
..+..+...+.+.|++++|++.|+++++.... +...|..+..+|.+.|++++|+..+++.++.+ ...+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 35566677777777777777777777776543 56677777777777777777777777766432 1111 23667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 721 ILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSF 757 (798)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 757 (798)
.++.++...|++++|++.|++.++. .||..+...|
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 7778888888888888888887763 4666555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-05 Score=67.19 Aligned_cols=97 Identities=20% Similarity=0.110 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..+..+...+...|++++|+..|+.+.... +.+...+..+..+|...|++++|+..+++..+.. +.+...+..++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445566667777777777777777776653 3356666667777777777777777777776653 22566666677777
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 003749 377 AKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~ 395 (798)
.+.|++++|+..|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777776655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=6e-06 Score=74.62 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=77.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...|..+...|.+.|++++|+..|++.++.. ..+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556777788888888888888888888764 3467778888888888888888888888888764 3367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 003749 376 FAKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~ 396 (798)
|.+.|++++|+..|+++++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888887764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.35 E-value=5.5e-06 Score=72.73 Aligned_cols=98 Identities=9% Similarity=-0.065 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 331 LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
...+..+...+.+.|++++|+..|++.++.+ +.+...|..+..+|.+.|++++|+..|+++...+.. +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 3455666677777888888888888877764 336777778888888888888888888888776433 56677777777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 003749 411 QCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~ 430 (798)
|...|++++|.+.|++.++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888777664
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.2e-06 Score=70.31 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=21.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++.+
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444443332 1133334444444444444444444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.8e-06 Score=73.50 Aligned_cols=96 Identities=11% Similarity=0.046 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGW 726 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 726 (798)
..|..+...+...|++++|++.|+++++.... +...|..+..+|.+.|++++|+..++++++.+ +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44555555666666666666666666655432 55566666666666666666666666666544 34555666666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 003749 727 ARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 727 ~~~g~~~~A~~~~~~m~~ 744 (798)
...|++++|++.|++.++
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 666666666666666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=6.2e-06 Score=70.84 Aligned_cols=114 Identities=7% Similarity=0.018 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCC----HHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKI--PRN----TFVYN 720 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 720 (798)
..|..+...+...|++++|..+|+++.+.... +...+..+..+|...|++++|..+++++....- ..+ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34556666666777777777777776665432 566666677777777777777777776665420 111 55677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003749 721 ILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSK 763 (798)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 763 (798)
.++.+|...|++++|.+.|+++.+. .|+...+..+......
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 7777777777777787777777764 3455555555544443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-05 Score=69.17 Aligned_cols=99 Identities=11% Similarity=-0.061 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003749 644 PNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILI 723 (798)
Q Consensus 644 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 723 (798)
.+...|..+...+...|++++|+..|.++++.... +...+..+..+|...|++++|...++++.+.+ +.+...|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 34556666666666777777777777766665433 56666667777777777777777777766654 44566677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003749 724 DGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 724 ~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-05 Score=65.38 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003749 648 TYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWA 727 (798)
Q Consensus 648 t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 727 (798)
.+..+...+...|++++|...|+++.+.... +...+..+..+|...|++++|...++++.+.. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444555555555555555555544322 44455555555555555555555555555433 334455555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003749 728 RRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 728 ~~g~~~~A~~~~~~m~~ 744 (798)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-05 Score=82.73 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=67.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTL----------------HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE-MS 365 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-~~ 365 (798)
...+...|++++|++.|..+.+....... ..+..+...|.+.|++++|.+.+.++.+.--. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999999886321111 13566677777777777777777666542100 01
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 366 L----VTYSIIVGGFAKMGNAEAADHWFEEAKER----HAT-LNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 366 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
. .+.+.+...+...|++++|+.+++..... +.. .-..++..++..|...|++++|..+++++.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 1 12223333334456666666666554431 111 112234444555555555555555554443
|
| >2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-06 Score=65.76 Aligned_cols=72 Identities=17% Similarity=0.342 Sum_probs=65.7
Q ss_pred ccceeecCCCccCchHHHHHHhccc-----CcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQF-----GPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
.++|=+-|||..+++..|+.+...+ |.+..+.++.| -|=|+|+|.|...|.+|.-++ +|..|.||+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-------H~GAivef~d~~~AgKasLaL--~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-------FNGAIIIFRDSKFAAKMLMIL--NGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-------TTEEEEECSCHHHHHHHHHHH--SSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-------CCceEEEEccchhhHHHHhhc--CCeeecCeE
Confidence 4578888999999999999999999 99999999998 577999999999999998888 999999999
Q ss_pred eeeecc
Q 003749 226 LTVKLD 231 (798)
Q Consensus 226 ~~v~~~ 231 (798)
|++.--
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 998543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-05 Score=69.88 Aligned_cols=96 Identities=18% Similarity=0.056 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
...|..+...+...|++++|+..|+.++... +.+...|..+..+|...|++++|+..|++.++.+ +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3344444444444444444444444444432 2233344444444444444444444444444432 1133444444444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 003749 376 FAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~ 393 (798)
|...|++++|+..|+++.
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-05 Score=83.66 Aligned_cols=196 Identities=10% Similarity=0.018 Sum_probs=118.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 003749 338 IHAYAVGRDMEEALSCVRKMKEEGIEMS----------------LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNA 401 (798)
Q Consensus 338 l~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 401 (798)
...+.+.|++++|++.|.++++...... ...+..++..|.+.|++++|.+.+..+.........
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4557788999999999999987532111 124677888888899999998888877653211111
Q ss_pred -----hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 003749 402 -----IIYGNIIYAQCQTRNMERAEALVRDMEEE----GIDAP-IDIYHMMMDGYTIIGNEEKCLIVFERLKEC--GF-- 467 (798)
Q Consensus 402 -----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 467 (798)
.+.+.+...+...|+.++|.++++..... +.... ..++..|+..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 12233334444667788888777766542 21111 345666777777777777777777776543 11
Q ss_pred Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 468 SP-SIISYGCLINLYTKIGKVSKALEVSKVMKSS--GIKHN----MKTYSMLINGFLKLKDWANVFAVFEDVM 533 (798)
Q Consensus 468 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 533 (798)
++ ...++..++..|...|++++|..++++.... .+..+ ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1345666677777777777777777666532 11111 1234444455555666666666555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.7e-05 Score=68.59 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=47.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
...+..+...+...|++++|+.+|++..+. .|+ ...|..+..+|...|++++|+..|++.++.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344555555555555555555555555544 233 3444444455555555555555555544432 113444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 372 IVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+..+|...|++++|+..|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 444555555555555555544443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-05 Score=69.17 Aligned_cols=115 Identities=9% Similarity=-0.070 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 003749 328 EPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAII 403 (798)
Q Consensus 328 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 403 (798)
..+...+..+...+.+.|++++|+.+|++.++.. ++ ..+|..+..+|.+.|++++|+..|+++...... +...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH
Confidence 3467788999999999999999999999999863 45 688999999999999999999999999887433 6788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003749 404 YGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (798)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 446 (798)
+..+..+|...|++++|.+.|++..+.. +.+..++..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 8999999999999999999999999874 34556666555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.8e-05 Score=85.39 Aligned_cols=169 Identities=7% Similarity=-0.081 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHH
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD----------MHRARQTFENMRARGIEPTLHV 333 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~ 333 (798)
++|.+.+++++..||. +...|+.--.++...|+ ++++++.++.+.+.. +-+..+
T Consensus 46 eeal~~~~~~l~~nP~---------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~a 109 (567)
T 1dce_A 46 ESVLELTSQILGANPD---------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (567)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHCch---------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHH
Confidence 7899999999999998 34445544445555555 899999999999875 457778
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 334 YTNLIHAYAVGR--DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG-NAEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 334 ~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
|+.-..++.+.+ ++++++++++++++.... +..+|+...-.+.+.| .++++++.++++++.++. |..+|+....+
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHH
Confidence 999999999999 679999999999998644 8889999988888999 899999999999887655 78888887777
Q ss_pred HHhc--------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 003749 411 QCQT--------------RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN 451 (798)
Q Consensus 411 ~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 451 (798)
+.+. +.++++++.+++.+... +-+..+|+.+...+.+.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 6653 34556666666666543 3345555555555544444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-06 Score=92.97 Aligned_cols=125 Identities=16% Similarity=0.084 Sum_probs=71.6
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPT--------------LHVYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
....|..+.+.|.+.|++++|+..|+++++..-... ...|+.+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677788899999999999999999988631111 345555555555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 003749 361 GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAE 421 (798)
Q Consensus 361 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 421 (798)
. +.+...|..+..+|.+.|++++|+..|+++++.... +..++..+..++.+.++.+++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3 224555555555555555555555555555554322 3444445555555555444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=7.9e-06 Score=69.32 Aligned_cols=95 Identities=11% Similarity=-0.047 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++.++... -+...+..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4455666777777777777777777763 34666777777777777777777777777777642 256677777777777
Q ss_pred cCCHHHHHHHHHHHHhc
Q 003749 379 MGNAEAADHWFEEAKER 395 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~ 395 (798)
.|++++|+..|+++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=69.29 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CC----HHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIE--MS----LVTYS 370 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~~ 370 (798)
..|..+...|...|++++|+..|+++.+.. ..+...+..+...|...|++++|+..|+++.+.... .+ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445666777777788888888887777763 345666777777777777777777777777664211 11 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.++.+|.+.|++++|++.|+++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6777777777777777777776665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=66.47 Aligned_cols=96 Identities=16% Similarity=0.051 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM--SLVTYSIIVGG 375 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~ 375 (798)
.+..+...+...|++++|+..|+++.+.. ..+...+..+..+|...|++++|+..|++.++.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555555555555555555555542 2244455555555555555555555555555532 22 34455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHhc
Q 003749 376 FAKM-GNAEAADHWFEEAKER 395 (798)
Q Consensus 376 ~~~~-g~~~~A~~~~~~~~~~ 395 (798)
|.+. |++++|++.|+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=68.38 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003749 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWAR 728 (798)
Q Consensus 649 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (798)
+..+...+.+.|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.+ +.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344555667777777777777777776543 66677777777777777777777777777655 4566677777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 003749 729 RGDVWEAADLMQQMKQ 744 (798)
Q Consensus 729 ~g~~~~A~~~~~~m~~ 744 (798)
.|++++|+..+++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-05 Score=65.92 Aligned_cols=97 Identities=18% Similarity=0.033 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR--NTFVYNILID 724 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 724 (798)
..|..+...+...|++++|...|+++++.... +...+..+..++...|++++|...++++.+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34555666666777777777777777665433 56666677777777777777777777777654 34 5667777777
Q ss_pred HHHHc-CCHHHHHHHHHHHHHc
Q 003749 725 GWARR-GDVWEAADLMQQMKQE 745 (798)
Q Consensus 725 ~~~~~-g~~~~A~~~~~~m~~~ 745 (798)
++.+. |++++|++.+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777777654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=85.89 Aligned_cols=110 Identities=14% Similarity=-0.043 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
++|.+.|+++++.++. +...|..+..+|.+.|++++|++.|+++.+.. ..+..+|..+..+|.+
T Consensus 23 ~~A~~~~~~Al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 23 ENAIKFYSQAIELNPS---------------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp HHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 8899999999988886 56778888889999999999999999998874 4467788888889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG--FAKMGNAEAADHWFE 390 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 390 (798)
.|++++|++.|++.++... -+...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998887642 245566666666 778888899988888
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=71.28 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CC---CCH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIE-PT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IE---MSL 366 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~---~~~ 366 (798)
..+..+...|...|++++|+..+++..+.... .+ ..++..+...|...|++++|+..+++..+.. .. ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34666777777888888888888777654100 01 1256666666777777777777776665421 00 013
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 367 VTYSIIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
.++..+...+...|++++|++.|++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555566666666666666665554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=71.14 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=14.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
++..+...|...|++++|+..+++.++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344455555555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00012 Score=80.34 Aligned_cols=173 Identities=10% Similarity=0.026 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 003749 592 MKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQ----------MEKAIEILDEMTLAGISPNEHTYTTIMHGYASLG- 660 (798)
Q Consensus 592 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g- 660 (798)
.++|++.++++++.+.. +..+|+.--.++...++ +++++++++++.+.+ +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 46778888888887654 66777776666666666 899999999998875 567889999999999999
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------
Q 003749 661 -DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG-RMQSALAVTKEMSAQKIPRNTFVYNILIDGWARR--------- 729 (798)
Q Consensus 661 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 729 (798)
++++++++++++.+...+ +...|+.-..++.+.| .++++++.++++.+.+ +.|...|+....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999998766 8889999999999999 8999999999999877 67888999888888773
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCccc
Q 003749 730 -----GDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDMQV 769 (798)
Q Consensus 730 -----g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~ 769 (798)
+.++++++++++.+... .-|...|..+...+.+.|..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56899999999998753 2367789888888888887444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.9e-05 Score=64.56 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTL---HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS---LVTYSIIV 373 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~ 373 (798)
..+...+...|++++|+..|+.+.+.. +.+. ..+..+..+|.+.|++++|+..|+++++... .+ ..++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHH
Confidence 445566677777777777777777753 1222 3666677777777777777777777776532 23 55666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 003749 374 GGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.+|.+.|++++|+..|+++...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.10 E-value=3.2e-05 Score=82.99 Aligned_cols=143 Identities=11% Similarity=-0.033 Sum_probs=79.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHH
Q 003749 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS--------------LVTYSIIVGG 375 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~l~~~ 375 (798)
+++++|+..|+...+.. ......|..+...|.+.|++++|+..|++.++...... ..+|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443321 11344677777888888888888888888877422111 3555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 455 (798)
|.+.|++++|+..|+++++.+.. +..+|..+..+|...|++++|+..|+++++.. +.+..++..+..++...++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554322 45555555555555555555555555555542 22334444455555544444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.6e-05 Score=67.21 Aligned_cols=94 Identities=16% Similarity=0.007 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHccCChHHHHHHHHHHHHc----
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPT--------L-----HVYTNLIHAYAVGRDMEEALSCVRKMKEE---- 360 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~-----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---- 360 (798)
.+..+.+.+.+.|++++|+..|++.++.. |+ . ..|+.+..++.+.|++++|+..|++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 44556677778888888888888888763 22 1 15555666666666666666666665553
Q ss_pred ---CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003749 361 ---GIEMSLVTY----SIIVGGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 361 ---g~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (798)
+. -+...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 21 123344 5555555555555555555555544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.6e-05 Score=69.23 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
...|..+..+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|+..|++.++.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4566677777777777777777777777655 556667777777777777777777777777763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.9e-06 Score=91.46 Aligned_cols=121 Identities=17% Similarity=0.052 Sum_probs=73.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (798)
+...|.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344556677777777777777653 3356667777777777777777777777777653 2356667777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 003749 382 AEAADHWFEEAKERHATLNAIIYGNIIYA--QCQTRNMERAEALVR 425 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 425 (798)
+++|++.|+++.+.... +...+..+..+ +.+.|++++|+++++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777776665322 33444444444 556666666666655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=68.05 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=58.4
Q ss_pred cCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003749 659 LGDTGKAFEYFTKLRNEGL--ELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 659 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
.|++++|+..|+++++.+. .-+...+..+..+|...|++++|+..++++++.. +.+...+..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776531 1245667777777777777777777777777665 456677777777777788888888
Q ss_pred HHHHHHHHc
Q 003749 737 DLMQQMKQE 745 (798)
Q Consensus 737 ~~~~~m~~~ 745 (798)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.05 E-value=3.2e-05 Score=80.18 Aligned_cols=139 Identities=12% Similarity=-0.020 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..|..+.+.|.+.|++++|+..|+++++.- ++. ......+++.+ . -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------L-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------G-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------H-HHHHHHHHHHHHHHH
Confidence 346778888999999999999999988730 000 00001111111 0 011344566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
.+.|++++|++.++++++.+. .+..++..+..+|...|++++|++.|++..+.. +.+..++..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665532 245566666666666666666666666666653 234555566666666666655554
Q ss_pred H
Q 003749 457 I 457 (798)
Q Consensus 457 ~ 457 (798)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.04 E-value=4.9e-05 Score=66.38 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEM------S-----LVTYSIIVGGFAKMGNAEAADHWFEEAKER----- 395 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 395 (798)
..+......+.+.|++++|+..|++.++..... + ...|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345566677778888888888888887753220 1 226777777777777777777777777664
Q ss_pred --CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 396 --HATLNAIIY----GNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 396 --~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
+.. +...| +....++...|++++|+..|++.++
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 322 34455 5566666666666666666666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00017 Score=61.51 Aligned_cols=91 Identities=11% Similarity=0.003 Sum_probs=39.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHH
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSL---VTYSIIVGGFAKMGNAEAADHWFEEAKERHATLN---AIIYGNIIYA 410 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~ 410 (798)
+...+.+.|++++|+..|+++++... .+. ..+..++.+|.+.|++++|+..|+++...... + ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 33444444555555555555444321 111 24444444444455555555555444443221 1 2333344444
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 003749 411 QCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~ 429 (798)
|.+.|++++|.+.|+++++
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-05 Score=70.42 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRAR--------G---------IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
..+..+.+.+.+.|++++|+..|.+.+.. . ...+...|..+..+|.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45677788899999999999999998875 0 011224555666666666666666666666665
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 360 EGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 360 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.+ +.+...|..++.+|...|++++|+..|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 53 224556666666666666666666666666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=4.9e-05 Score=78.72 Aligned_cols=140 Identities=10% Similarity=-0.029 Sum_probs=84.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 576 SRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (798)
Q Consensus 576 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 655 (798)
...+..+...+.+.|++++|+..|+++++... . . ......+++.+ .. ..+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~---~-------~~~~~~~~~~~-------~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--G---S-------RAAAEDADGAK-------LQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H---H-------HHHSCHHHHGG-------GH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--c---C-------ccccChHHHHH-------HH-HHHHHHHHHHHHH
Confidence 45566777777788888888888877765200 0 0 00001111111 00 1234566667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003749 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEA 735 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 735 (798)
|.+.|++++|++.++++++.... +...|..+..+|...|++++|+..++++.+.. +.+...+..+..++.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777765433 56667777777777777777777777776654 44566666666666666666555
Q ss_pred HH
Q 003749 736 AD 737 (798)
Q Consensus 736 ~~ 737 (798)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=1e-05 Score=68.22 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=53.5
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003749 309 RGDMHRARQTFENMRARG--IEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAAD 386 (798)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (798)
.|++++|+..|+++++.+ -+.+...+..+..+|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777777653 12234456666677777777777777777776653 225666666777777777777777
Q ss_pred HHHHHHHhc
Q 003749 387 HWFEEAKER 395 (798)
Q Consensus 387 ~~~~~~~~~ 395 (798)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-05 Score=81.59 Aligned_cols=148 Identities=11% Similarity=-0.036 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..+..+.+.|.+.|++++|+..|++++.. .|+... +...++++++...+ . ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34567788888999999999999998876 333321 22333444443322 1 13677777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG-YTIIGNEEKC 455 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 455 (798)
.+.|++++|+..|+++++.+. .+..+|..+..+|...|++++|++.|++.++.. +.+..++..|... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777643 367777778888888888888888888776653 2344555555555 3345566777
Q ss_pred HHHHHHHHHC
Q 003749 456 LIVFERLKEC 465 (798)
Q Consensus 456 ~~~~~~~~~~ 465 (798)
..+|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00013 Score=63.23 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 003749 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAA 385 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A 385 (798)
+++++|++.|++..+.| +...+ |...|...+.+++|+++|++..+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777766665 22222 5555555566666777776666654 55666666666666 5666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEG 431 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 431 (798)
+++|++..+.+ +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666553 45555556666655 566666666666665554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.6e-05 Score=79.91 Aligned_cols=148 Identities=11% Similarity=-0.069 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQ 411 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 411 (798)
..+..+...|.+.|++++|+..|++.++.. ++.. .+...|+++++...+. ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 346677888889999999999999988752 3322 1234455555544332 23788899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHHcCCHHHH
Q 003749 412 CQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINL-YTKIGKVSKA 490 (798)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A 490 (798)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++.++.... +...+..|..+ ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 457889999999999999999999999999775322 45566666655 3445678888
Q ss_pred HHHHHHHHHC
Q 003749 491 LEVSKVMKSS 500 (798)
Q Consensus 491 ~~~~~~m~~~ 500 (798)
..+|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8999998765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00023 Score=61.73 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHH
Q 003749 345 RDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERA 420 (798)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 420 (798)
+++++|+++|++..+.| +.... |...|...+.+++|+++|++..+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777665 22223 6666666666666777777766653 55666666666665 5666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 003749 421 EALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKECG 466 (798)
Q Consensus 421 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 466 (798)
.+.|++..+.| +...+..|..+|.. .++.++|+.+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666654 45555566666655 566666666666665544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=7.4e-05 Score=79.83 Aligned_cols=88 Identities=13% Similarity=-0.006 Sum_probs=43.5
Q ss_pred HHHcCChHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CC-CHHHHHH
Q 003749 306 YARRGDMHRARQTFENMRAR-----GI-EP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-----GI-EM-SLVTYSI 371 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~ 371 (798)
+...|++++|+.++++.++. |- .| ...+++.|..+|...|++++|+.++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34456666666666555542 10 01 1224555556666666666666655554431 10 11 1234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003749 372 IVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
|+..|...|++++|+.+|+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=59.65 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 003749 680 DVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-------VH 752 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-------~~ 752 (798)
+...+..+...+...|++++|...++++.+.. +.+...|..++.+|.+.|++++|++.+++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34566777778888888888888888887765 557778888888888888888888888888764 444 55
Q ss_pred HHHHHHHHHHHcCCccccccccc
Q 003749 753 TYTSFINACSKAGDMQVRFSIPM 775 (798)
Q Consensus 753 ~~~~l~~~~~~~g~~~~a~~~~~ 775 (798)
.+..+..++...|+.++|++...
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 67777888888888888877644
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=6.4e-05 Score=65.51 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 698 QSALAVTKEMSAQKIPRNTFVYNILIDGWARR-----------GDVWEAADLMQQMKQEGVQPDVHTYTSFINACS 762 (798)
Q Consensus 698 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 762 (798)
++|+..|++.++.+ +.+...|..++.+|... |++++|++.|++.++ +.|+...|...+..+.
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 46666666666554 44555666666666554 367777777777766 4566555555544433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0002 Score=76.59 Aligned_cols=124 Identities=10% Similarity=-0.111 Sum_probs=59.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCChhhHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERH-------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE-----G--IDAPIDIYHM 441 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~--~~~~~~~~~~ 441 (798)
+..+|++++|+.++++.+... ......+++.|+.+|...|++++|+.++++.++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334555555555555544321 0011234445555555555555555555444331 1 0111334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 442 MMDGYTIIGNEEKCLIVFERLKEC-----GF-SPS-IISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
|...|...|++++|+.+|++.++. |. .|+ ..+.+.+..++...+.+++|..+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655555432 21 122 22334445555566666666666666654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00015 Score=60.48 Aligned_cols=81 Identities=7% Similarity=-0.090 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
+.|+..|++++..+|. +...+..+...|...|++++|+..|+++++.. ..+...|..+..+|..
T Consensus 2 ~~a~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQGTD---------------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTTTCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 3567777888777776 55667777888888888888888888888764 3456677778888888
Q ss_pred cCChHHHHHHHHHHHHc
Q 003749 344 GRDMEEALSCVRKMKEE 360 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~ 360 (798)
.|++++|+..|++.++.
T Consensus 66 ~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 66 QGDRAGARQAWESGLAA 82 (115)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888877653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00015 Score=63.21 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCCh----------HHHHHHHHHHHHCCCCCC
Q 003749 261 KEREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDM----------HRARQTFENMRARGIEPT 330 (798)
Q Consensus 261 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~~~ 330 (798)
..+++|++.|+++++.+|. +...|..+..++.+.|++ ++|+..|++.++.+ +.+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~---------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~ 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL---------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred hHHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCc
Confidence 4559999999999999998 667777788888877765 48888888888774 346
Q ss_pred HHHHHHHHHHHHccC-----------ChHHHHHHHHHHHHcCCCCCHHHHH
Q 003749 331 LHVYTNLIHAYAVGR-----------DMEEALSCVRKMKEEGIEMSLVTYS 370 (798)
Q Consensus 331 ~~~~~~ll~~~~~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~~ 370 (798)
..+|..+..+|...| ++++|++.|++.++. .|+...|.
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 667777888887664 677777777777774 34444443
|
| >1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00013 Score=56.98 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=62.6
Q ss_pred cceeecCCCccC-ch----HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 152 GKIFVGNLPNWI-KK----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 152 ~~~~v~nl~~~~-~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
++|+|.||+.++ +. +.++.+|..|+++......+. -.-..|.|.++++|.+|...| ++..++|+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~L--h~~~f~g~~~ 76 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRL--HKTEFLGKEM 76 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTS--TTSEETTEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-------ceEEEEEeCChHHHHHHHHHh--ccceecCcee
Confidence 489999998876 33 356899999999999888876 335789999999999999988 9999999999
Q ss_pred eeecccc
Q 003749 227 TVKLDDG 233 (798)
Q Consensus 227 ~v~~~~~ 233 (798)
+|-++.+
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9998863
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=5.3e-05 Score=62.73 Aligned_cols=92 Identities=12% Similarity=-0.004 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC------HHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRN------TFVY 719 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 719 (798)
...|..+...+...|++++|++.|+++++.... +...+..+..+|.+.|++++|+..++++++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 345556666666677777777777766665433 56666666777777777777777777766644 222 4445
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 003749 720 NILIDGWARRGDVWEAADLM 739 (798)
Q Consensus 720 ~~l~~~~~~~g~~~~A~~~~ 739 (798)
..+..++...|+.++|++.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55555555555544444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0004 Score=57.91 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 665 AFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 665 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
|++.|+++++.... +...+..+..+|...|++++|+..++++.+.+ +.+...|..+..+|...|++++|+..|++..+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444443322 44455555555555555555555555555433 33444555555555555555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0009 Score=52.64 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 649 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
+..+...+...|++++|+..|+++++.... +...+..+..+|.+.|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333333444444444444444444433221 333334444444444444444444444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00093 Score=52.53 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
+..+...+.+.|++++|+..|++...... .+..++..+..+|.+.|++++|.+.|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344444444444444444444433321 1233333344444444444444444444433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.48 E-value=0.23 Score=56.28 Aligned_cols=276 Identities=13% Similarity=0.071 Sum_probs=148.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 003749 481 YTKIGKVSKALEVSKVMKSSGIKHNM--KTYSMLINGFLKLKDWANVFAVFEDVMRDGL-------KPDVVLYNNIIRAF 551 (798)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-------~~~~~~~~~li~~~ 551 (798)
....|+.++++.++......+-..+. ..-..+.-+....|..+++..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34456667777666655432101222 2333344455566666677777776655311 01122223333344
Q ss_pred HcCCC-hHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003749 552 CGMGN-MDRAIHIVKEMQKERHRPTSRTFM--PIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQME 628 (798)
Q Consensus 552 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 628 (798)
+-.|. -+++...+..+...... ...... +|...|.-.|+-+....++..+.+.. .-+..-+.++.-++...|+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 44443 34666666666654211 111112 23333556678888888887776532 112222233333455778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003749 629 KAIEILDEMTLAGISPNEHTYT---TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTK 705 (798)
Q Consensus 629 ~A~~~~~~m~~~~~~p~~~t~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (798)
.+..+++.+.... .|. .-|. .+..+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888877642 222 2232 34456778888777777888888642 2233333333334455677677777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 706 EMSAQKIPRNTFVYNILIDGWARRGDV-WEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 706 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
.+.+.+ .+.+..-..+.-+....|.. .+++.++..+.. .+|..+-..-+-++...|
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 666543 33333333444444444443 678888888874 456665555555665555
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0013 Score=53.13 Aligned_cols=62 Identities=26% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 681 VFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 743 (798)
...+..+..+|.+.|++++|+..|+++++.+ +.+...|..+..+|...|++++|++.+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444433 2333444444444444555555554444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0021 Score=51.82 Aligned_cols=62 Identities=18% Similarity=-0.010 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003749 366 LVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 428 (798)
...|..+..+|.+.|++++|+..|+++++.+.. +..+|..+..+|.+.|++++|.+.|++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444444443222 33344444444444444444444444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.017 Score=67.07 Aligned_cols=169 Identities=15% Similarity=0.125 Sum_probs=96.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 545 NNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEK 624 (798)
Q Consensus 545 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 624 (798)
..++..+.+.|..++|+++.++-. .-.......|+++.|+++.+.+ .+...|..|...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 566666777777777776553211 1133455678888887775432 3677888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003749 625 RQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVT 704 (798)
Q Consensus 625 ~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (798)
++++.|++.|.++.+ |..+...|...|+.+...++-+.+...|. ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 888888888876642 44445555556666665555544444431 133344455566666665555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCccccccc
Q 003749 705 KEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDV----HTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 705 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
.+.+++++|..+-+.. .|.. .+.......+...|+.+.|..+
T Consensus 760 ----------------------~~~~~~~~A~~lA~~~-----~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l 805 (814)
T 3mkq_A 760 ----------------------IKSQRFSEAAFLGSTY-----GLGDNEVNDIVTKWKENLILNGKNTVSERV 805 (814)
T ss_dssp ----------------------HHTTCHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTCHHHHTTB
T ss_pred ----------------------HHcCChHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhccchhHHHhh
Confidence 3445666666655442 2333 3333344455556654444444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.063 Score=51.53 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHH
Q 003749 382 AEAADHWFEEAKERHATL-NAIIYGNIIYAQCQT-----RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTII-GNEEK 454 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 454 (798)
...|..+++++++.+... +...|..+...|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 567778888888774432 355788888888884 88889999998888876434577788888888774 88888
Q ss_pred HHHHHHHHHHCCCC--cCHHHHH
Q 003749 455 CLIVFERLKECGFS--PSIISYG 475 (798)
Q Consensus 455 A~~~~~~~~~~~~~--~~~~~~~ 475 (798)
+.+.+++.+..... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888887655 5544443
|
| >2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0041 Score=48.35 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=57.9
Q ss_pred ccceeecCCCccCchHHHHHHhcc-----cCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQ-----FGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~-----~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
..+|.|.|||+.++++.|+-.|++ -|+|.++.... +-|+|+|.+.+.|++.++. ..+.|+|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k---~~H~L~~~~ 75 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ---ADHELHGAQ 75 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC---SCCBSSSSB
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC---CcceecCeE
Confidence 358999999999999999999965 37888887742 5789999999999999873 388999999
Q ss_pred eeeeccc
Q 003749 226 LTVKLDD 232 (798)
Q Consensus 226 ~~v~~~~ 232 (798)
|.|.-..
T Consensus 76 LsV~P~~ 82 (104)
T 2dhx_A 76 LSLRPAP 82 (104)
T ss_dssp CEEEECC
T ss_pred EEEEcCC
Confidence 9886543
|
| >1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0036 Score=47.92 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=44.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
+.++| +.|.++.-.||.++|+.||.| .|+.+.| --|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--------TEEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--------CeEEEEecCHHHHHHHHHhc
Confidence 35555 999999999999999999954 4666655 47999999999999999866
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.11 Score=45.79 Aligned_cols=104 Identities=11% Similarity=0.151 Sum_probs=68.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (798)
-.....+.|+++.|+++.+++ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 344556678888888877665 2667788888888888888888888876642 3344455666777
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 417 MERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFER 461 (798)
Q Consensus 417 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (798)
.++..++-+.....|- ++.....+...|+++++.++|.+
T Consensus 76 ~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7766666555555441 44555566667777777777654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.21 Score=41.10 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=106.7
Q ss_pred cHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 578 TFMPIIHG--FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHG 655 (798)
Q Consensus 578 ~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 655 (798)
+...|+.+ +.-.|..++..++..+.... .+..-||-+|.-....-+-+-..++++..-.. -|
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD---------- 70 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD---------- 70 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------
Confidence 33444444 34568888899988888764 36777777777776666666666666655432 11
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003749 656 YASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEA 735 (798)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 735 (798)
....|++......+-.+- -+...++..++.+...|+.+.-.+++..+... .+++....--+..+|.+.|+..+|
T Consensus 71 is~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 71 LDKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp GGGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhH
Confidence 124455666665554442 24556677888899999999999999987543 368899999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 003749 736 ADLMQQMKQEGVQ 748 (798)
Q Consensus 736 ~~~~~~m~~~g~~ 748 (798)
.+++.+..+.|++
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 9999999999875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.014 Score=58.47 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+..+|..+...+...|++++|+..+++++..+ ++...|..+...+.-.|++++|.+.|+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44444444444444555555555555555543 44445555555555555555555555555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.054 Score=62.76 Aligned_cols=75 Identities=16% Similarity=0.058 Sum_probs=35.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003749 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (798)
..++..+.+.|.+++|+++.+... .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555555555555555432110 1122334455555555543322 1344555555555555
Q ss_pred CChHHHHHHHHHH
Q 003749 415 RNMERAEALVRDM 427 (798)
Q Consensus 415 g~~~~A~~~~~~m 427 (798)
++++.|+++|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 5555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0043 Score=49.64 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=33.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLH-VYTNLIHAYAVGRDMEEALSCVRKMKEE 360 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 360 (798)
...+.+.|++++|+..|+++.+.. ..+.. .+..+..+|...|++++|+..|++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445556666666666666666553 22444 5556666666666666666666666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0039 Score=65.32 Aligned_cols=86 Identities=13% Similarity=-0.014 Sum_probs=49.1
Q ss_pred ccCChHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCCChhhHHHHH
Q 003749 343 VGRDMEEALSCVRKMKEE-----GI-EM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKER-----H--ATLNAIIYGNII 408 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~ 408 (798)
+.|++++|+.++++.++. |. .| -..+++.|+.+|..+|++++|+.++++++.. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777776542 11 11 2356777777777777777777777776542 1 111233455555
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 003749 409 YAQCQTRNMERAEALVRDME 428 (798)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~ 428 (798)
.+|..+|++++|+.++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.048 Score=54.68 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003749 679 LDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTY 754 (798)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 754 (798)
.+..+|..+..++...|++++|...++++...+ ++...|..+.+.+...|+.++|.+.+++... +.|...||
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 355666666555555666666666666666654 5555566666666666666666666666665 34555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.005 Score=49.27 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=24.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003749 655 GYASLGDTGKAFEYFTKLRNEGLELDVF-TYEALLKACCKSGRMQSALAVTKEMSA 709 (798)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (798)
.+...|++++|++.|+++++.... +.. .+..+..+|...|++++|...|+++.+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444443321 333 444444444444444444444444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0044 Score=64.92 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=69.5
Q ss_pred HcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CCC-HHHHHHHH
Q 003749 308 RRGDMHRARQTFENMRAR---GIEP----TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-----GI-EMS-LVTYSIIV 373 (798)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~-~~~~~~l~ 373 (798)
..|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|+.++++.++. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468899999999998873 1112 2347899999999999999999999998752 31 223 45699999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003749 374 GGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~ 394 (798)
..|..+|++++|+.+|+++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0087 Score=62.81 Aligned_cols=91 Identities=13% Similarity=-0.052 Sum_probs=52.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C-CCC-CHHH
Q 003749 303 VNYYARRGDMHRARQTFENMRARG---IEP----TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE-----G-IEM-SLVT 368 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~ 368 (798)
+..+.+.|++++|+.+++++.+.. +.+ ...+++.|..+|...|++++|+.+++++++. | ..| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556677777777777776531 111 1235666667777777777777777666531 1 111 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
++.|...|...|++++|+.+|+++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.43 E-value=2.8e-06 Score=86.03 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=103.1
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 295 SRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
|+..|..+|.+..+.|.+++-+..+...++..- +..+=+.|+-+|++.+++.+-.+++ -.+|..-...+++
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 556778888898899999988888888777633 3444468899999988877544432 1245555667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC--------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003749 375 GFAKMGNAEAADHWFEEAKERH--------------------ATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA 434 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 434 (798)
-|...|.++.|.-+|..+.... -..+..+|..+..+|...+.|.-|.-.--.++-..
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha--- 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA--- 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---
Confidence 7888888888877776542110 01244555555555666665555544433333211
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 003749 435 PIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKI 484 (798)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 484 (798)
+-...|+..|...|.+++-+.+++.-+.. -+.....|+-|.-.|++-
T Consensus 230 --deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 230 --DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp --SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 11223445555566666655555554421 122445555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.013 Score=61.62 Aligned_cols=90 Identities=10% Similarity=0.005 Sum_probs=57.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----C--CCCCHHHHH
Q 003749 655 GYASLGDTGKAFEYFTKLRNEG---LELD----VFTYEALLKACCKSGRMQSALAVTKEMSAQ-----K--IPRNTFVYN 720 (798)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 720 (798)
.+.+.|++++|+++++++++.. +.++ ..+++.|+.+|...|++++|+.+++++++. | .+.-..+|+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777776431 1111 345677777777777777777777766531 2 111234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 721 ILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 721 ~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
.|...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888888888888888877654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.29 E-value=3.8e-07 Score=92.24 Aligned_cols=117 Identities=9% Similarity=0.129 Sum_probs=85.0
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGG 375 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 375 (798)
+..|+.|..++.+.|...+|++.|=+. .|...|..+|....+.|.+++-+..+...++. .-+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 346788889988888888887655332 26667888999999999999988888666554 2355666788999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 003749 376 FAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDM 427 (798)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 427 (798)
|++.++..+-.+++. .+|..-...+..-|...|.++.|.-+|..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 999998776544432 356666677777788888888777766544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.27 Score=43.35 Aligned_cols=100 Identities=11% Similarity=0.187 Sum_probs=52.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 003749 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKA 490 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 490 (798)
..+.|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666655544 1345566666666666666666666665432 33444445555665555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003749 491 LEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFED 531 (798)
Q Consensus 491 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 531 (798)
..+-+.....|- ++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 544444444331 23333344455666666666543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.41 Score=39.40 Aligned_cols=141 Identities=11% Similarity=0.084 Sum_probs=77.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAA 385 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 385 (798)
+...|..+++.++..+..... +..-||.+|-.....-+-+-..++++.+-+. .|. ...|++...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 445677777777777766642 5555666665555555555555555444331 121 233444444
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
.+.|-.+-. +...+...+..+..+|+.++-.+++.++... ..++......+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444443321 3334444556666667777766666665332 2455566666666666666666666666666666
Q ss_pred CCC
Q 003749 466 GFS 468 (798)
Q Consensus 466 ~~~ 468 (798)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 543
|
| >3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0064 Score=46.73 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=44.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
+.++| +.|.++.-.||.++|+.||. ..|+.+-| --|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD--------TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD--------TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET--------TEEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC--------CeEEEEecCHHHHHHHHHhc
Confidence 34556 99999999999999999994 45666655 47999999999999999876
|
| >1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.024 Score=43.70 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=57.1
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCC-cceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
++|-|.+||+..|++++.+.++..+.+.....+.++...+.+ -+-|+|.|.+.+++..-.+.+ +|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~--~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF--DGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH--TTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh--CCcEEEc
Confidence 478999999999999999999999888777777662222222 468999999999999999988 9988754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.096 Score=50.27 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CCh
Q 003749 347 MEEALSCVRKMKEEGIEMS---LVTYSIIVGGFAKM-----GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT-RNM 417 (798)
Q Consensus 347 ~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 417 (798)
...|..++++.++. .|+ -..|..++..|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35677777777775 344 45788888888884 88888888888888876544577777778888774 888
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHH
Q 003749 418 ERAEALVRDMEEEGID--APIDIYH 440 (798)
Q Consensus 418 ~~A~~~~~~m~~~~~~--~~~~~~~ 440 (798)
+++.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888886544 4443333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.049 Score=42.79 Aligned_cols=64 Identities=9% Similarity=-0.009 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 680 DVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
|...+..+..++...++ .++|..++++.++.+ +.+...+..++..+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555443333 455555555555544 44555555555555556666666666665554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.074 Score=45.68 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003749 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSG---RMQSALAVTKEMSAQKIPR--NTFVYNILIDGWARRGDVWEAA 736 (798)
Q Consensus 662 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 736 (798)
...+.+.|.+..+.+. ++..+.-.+.+++++.+ ++++++.++++..+.+ .| +...+-.|.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555554 46666666777777766 5557777777776643 12 2445556666777788888888
Q ss_pred HHHHHHHHcCCCCCH
Q 003749 737 DLMQQMKQEGVQPDV 751 (798)
Q Consensus 737 ~~~~~m~~~g~~pd~ 751 (798)
++++.+++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 88888776 46653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.75 E-value=3.7 Score=46.61 Aligned_cols=311 Identities=12% Similarity=0.047 Sum_probs=166.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHH
Q 003749 445 GYTIIGNEEKCLIVFERLKECGFSPSII--SYGCLINLYTKIGKVSKALEVSKVMKSSGI--K-----HNMKTYSMLING 515 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----~~~~~~~~ll~~ 515 (798)
+....|+.++++.++++.+..+-..+.. .-..+.-+....|..++++.++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556778888888777765421011222 222333445556666678887777664321 0 112222333333
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHH--HHHHHHHh
Q 003749 516 FLKLKD-WANVFAVFEDVMRDGLKPDVV----LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFM--PIIHGFAR 588 (798)
Q Consensus 516 ~~~~~~-~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~ 588 (798)
++-.|. -+++...+..++... +.. .-..|...+...|+-+-...++..+.+.. +..... .+.-++.-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333333 245666666666531 222 12234445567788777777877776542 222332 33334456
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003749 589 AGEMKRALEIFDMMRRSGCIPTVHTFN---ALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665 (798)
Q Consensus 589 ~~~~~~a~~~~~~~~~~~~~p~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 665 (798)
.|+.+.+..+.+.+... ..| ..-|. ++..+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 78888888888887763 112 22232 33456778889877777998887642 23334344444455567777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC-------CHHHH
Q 003749 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGR-MQSALAVTKEMSAQKIPRNTFVYNILIDGWAR--RG-------DVWEA 735 (798)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g-------~~~~A 735 (798)
.++++.+.+.+ .+....-..+.-+....|+ ..++..++..+... .|..+-..-+.++.. .| ++...
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~ 689 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADI 689 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHH
Confidence 77777666543 3444433344444444554 36788888888753 344443333333333 22 34444
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCcc
Q 003749 736 ADLMQQMKQE-GVQPDVHTYTSFINACSKAGDMQ 768 (798)
Q Consensus 736 ~~~~~~m~~~-g~~pd~~~~~~l~~~~~~~g~~~ 768 (798)
++.+...... .-.++...-..+..+....|.--
T Consensus 690 l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 5544444432 22233445556667777777533
|
| >1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.036 Score=44.79 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=54.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc-eeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG-RVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g-~~~~v~ 229 (798)
.+-|-|-+.++.. -+.+.+.|++||.|.+...... ...-.|.|.+..+|++|+.. ||..|+| -.|-|.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-------~NWihI~Y~s~~~A~rAL~k---NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-------GNWMHIRYQSKLQARKALSK---DGRIFGESIMIGVK 92 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-------SSEEEEEESSHHHHHHHHTT---TTCEETTTEECEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-------CCeEEEEeCCHHHHHHHHHh---CCeEecCCEEEEEE
Confidence 3467777888774 5667889999999998876322 56999999999999999965 8999985 445665
Q ss_pred cc
Q 003749 230 LD 231 (798)
Q Consensus 230 ~~ 231 (798)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 53
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.09 Score=42.33 Aligned_cols=63 Identities=8% Similarity=-0.089 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEG------IEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (798)
..+..|...+.+.|++..|...|++..+.- -.....++..|..+|.+.|++++|+..++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444444455555555444443320 011233344444444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.086 Score=45.26 Aligned_cols=83 Identities=10% Similarity=0.130 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR---DMEEALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
...+++.|++..+.+ .++..+...+..++++.+ ++++++.+|+++.+.+.+ -+...+..|.-+|.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 334444444444443 244455555555555544 344555555555544200 123334444444455555555555
Q ss_pred HHHHHHhc
Q 003749 388 WFEEAKER 395 (798)
Q Consensus 388 ~~~~~~~~ 395 (798)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.65 E-value=3.6 Score=45.77 Aligned_cols=127 Identities=12% Similarity=0.145 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcC-CHHHHHHHHHHHHHC------CCC-cCH
Q 003749 403 IYGNIIYAQCQTRN-MERAEALVRDMEEEGIDAPIDIY--HMMMDGYTIIG-NEEKCLIVFERLKEC------GFS-PSI 471 (798)
Q Consensus 403 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~-~~~ 471 (798)
....++..+...++ .+.|..+|+++.... |...++ ..++..+...+ +--+|..++.+.++. ... .+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 44556666666666 588999999998874 333332 23333333333 344566666665431 111 111
Q ss_pred H----------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 472 I----------SYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDV 532 (798)
Q Consensus 472 ~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 532 (798)
. ....=.+.+...|+++-|+.+-++....- +.+-.+|..|..+|.+.|+++.|+-.+..+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11111355677899999999999988762 445779999999999999999999888776
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.12 Score=40.47 Aligned_cols=67 Identities=9% Similarity=-0.073 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 003749 644 PNEHTYTTIMHGYASLGD---TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK 711 (798)
Q Consensus 644 p~~~t~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (798)
.+...+..+..++...++ .++|..+|+++++.... +......+...+.+.|++++|..+|+++.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345555555655544433 57777777777776544 66666777777777777777777777777654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.12 Score=41.54 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 647 HTYTTIMHGYASLGDTGKAFEYFTKLRNEG------LELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 647 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
..+..|...+.+.|+++.|...|+.+++.- -.....++..|..+|.+.|+++.|..+++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334445555555555555555555554321 0123445555555566666666666666555543
|
| >3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.019 Score=59.35 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=42.8
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHh
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 213 (798)
.++|||. .+..+++.+|.+.|++||.|.++..-.+ + .-|+.|||.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-F-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-S-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-C-----CeEEEEEeCCHHHHHHHHhc
Confidence 3589997 7999999999999999999999988876 1 25999999999999988754
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.42 Score=40.38 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=34.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFS 468 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (798)
..++.++|.++|+.+++..-. -..+|....+.-.+.|+...|.+++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 336677777777777654222 2556666666666777777777777777666544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.76 E-value=5.4 Score=41.70 Aligned_cols=188 Identities=7% Similarity=0.108 Sum_probs=86.1
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcC
Q 003749 310 GDMHRARQTFENMRAR-----GIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF----AKMG 380 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~g 380 (798)
|++++|++.+-.+.+. +...+......++..|.+.|+++...+.+..+.+..... -..-..++..+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 5566676666554432 223344556777777888888877777666555432111 11112222211 1112
Q ss_pred CHHH--HHHHHHHHHhc--C-CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHH
Q 003749 381 NAEA--ADHWFEEAKER--H-ATL---NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDA-P----IDIYHMMMDGYT 447 (798)
Q Consensus 381 ~~~~--A~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~----~~~~~~l~~~~~ 447 (798)
..+. -+.+.+..... | ... .......|...|...|++.+|.+++.++...-... + ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 1111 11111110000 0 000 01122345566666666666666666654321111 1 234555556666
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 448 IIGNEEKCLIVFERLKE----CGFSPS--IISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 448 ~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
..+++..|..++.++.. ....++ ...+..++..+...+++.+|.+.|.++.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666666666665432 111111 2334445555555666666655555443
|
| >3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.073 Score=43.62 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=53.2
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceE-EEEecCC-----------CCCC-CCcceEEEEeCChhHHHHHHHhcccCCe
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKN-VILIKGY-----------NNFE-KNVGFGFVIYDGPAAEKSAMKAVEFDGV 219 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~-----------~~~~-~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 219 (798)
.|.|=+.|++ ....+-+.|++||.|.+ +.+.++. +..+ ...+.-.|.|+++.+|.+|+.. ||.
T Consensus 9 ~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~---NG~ 84 (132)
T 3p3d_A 9 AILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE---NGA 84 (132)
T ss_dssp EEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT---TTC
T ss_pred EEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh---CCe
Confidence 4455566655 44567778999999975 3222110 0000 0145779999999999999965 999
Q ss_pred eecceeeeeecccccc
Q 003749 220 EFHGRVLTVKLDDGRR 235 (798)
Q Consensus 220 ~~~g~~~~v~~~~~~~ 235 (798)
.|+|..|-|...+...
T Consensus 85 ii~G~mIGV~Py~~~~ 100 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKDA 100 (132)
T ss_dssp EETTEECEEEECCHHH
T ss_pred EeCcEEEEEEECCHHH
Confidence 9999988887765443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.32 E-value=6.2 Score=41.27 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 450 GNEEKCLIVFERLKEC-----GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 450 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
|+++.|++.+..+.+. +..........++..|...|+++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766555432 2233455666777778888888777766655544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.05 E-value=0.86 Score=38.54 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGID 433 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 433 (798)
.++.++|.++|+.++..+-. -..+|.....--.++|++..|.+++.+.+..+..
T Consensus 73 i~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 36777777777777655222 2556666666666777777777777777776533
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.94 E-value=0.42 Score=39.34 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 003749 312 MHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEE---ALSCVRKMKEEGIE-MSLVTYSIIVGGFAKMGNAEAADH 387 (798)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~ 387 (798)
...+.+.|......| .++..+-..+..++++..+..+ ++.+++++.+.+.+ -.-.....|.-++.+.|++++|++
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445555544444 2566666666666666655544 66666666654311 123344455556666666666666
Q ss_pred HHHHHHhc
Q 003749 388 WFEEAKER 395 (798)
Q Consensus 388 ~~~~~~~~ 395 (798)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.86 E-value=1.1 Score=36.88 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 003749 662 TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS---ALAVTKEMSAQKIP-RNTFVYNILIDGWARRGDVWEAAD 737 (798)
Q Consensus 662 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 737 (798)
+..+.+.|.+....|. ++..+--.+.+++.+..+..+ ++.+++++...+-+ ......-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4444555555544443 455555566666666665443 66666666654311 122344456666777777777777
Q ss_pred HHHHHHHcCCCCC
Q 003749 738 LMQQMKQEGVQPD 750 (798)
Q Consensus 738 ~~~~m~~~g~~pd 750 (798)
+++.+++ +.|+
T Consensus 96 ~~~~lL~--~eP~ 106 (126)
T 1nzn_A 96 YVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHH--hCCC
Confidence 7777776 3554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.76 E-value=7.8 Score=37.84 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHH
Q 003749 680 DVFTYEALLKACCKSGRMQSALAVT 704 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (798)
+......+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4555555555555555555555544
|
| >2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.071 Score=46.99 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=26.4
Q ss_pred EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 180 NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 180 ~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
.++++.+ .++++|||||+|.+.++|.+|+..+
T Consensus 2 ~~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 2 QYKLILN---GKTLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEEEE---CSSCEEEEEEECSSHHHHHHHHHHH
T ss_pred cEEEEec---CccccchhHHHHHHHHhHHHHHHhh
Confidence 4566665 2367999999999999999999877
|
| >2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.18 Score=39.04 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=51.3
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCC-cceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
-+|-|..||+..|++++.+.++..-++.....+..+...+.+ -+.|+|.|.+.++...-.+.. +|+.+.+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f--~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF--DGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS--TTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc--CCcEEEeC
Confidence 389999999999999988888766554333333331222222 367899999999999999988 99887543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.57 Score=52.15 Aligned_cols=52 Identities=8% Similarity=-0.044 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003749 712 IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAG 765 (798)
Q Consensus 712 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g 765 (798)
...+..-|.+|+....|.++++||.+.|+..+.. +-|...+..|+..|.+.+
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 3456778999999999999999999999999874 568899999999998876
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.73 E-value=13 Score=37.89 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHH--
Q 003749 441 MMMDGYTIIGNEEKCLIVFERLKECGFSPS-----IISYGCLINLYTKIGKVSKALEVSKVMKSSG--IKHNMKTYSM-- 511 (798)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~-- 511 (798)
.|+..|...|++.+|.+++.++.+.--..| ..+|..-+.+|...+++.++...+....... +.++......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567777788888888777777765311111 3345555677788888888887777665421 1122222111
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHHH
Q 003749 512 --LINGFL-KLKDWANVFAVFEDVM 533 (798)
Q Consensus 512 --ll~~~~-~~~~~~~a~~~~~~~~ 533 (798)
-...+. ..++|..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 122344 5677777777776553
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.40 E-value=17 Score=36.97 Aligned_cols=220 Identities=9% Similarity=0.061 Sum_probs=94.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCC--CCCCcccHHHHH-
Q 003749 512 LINGFLKLKDWANVFAVFEDVMRDGLKPD-----VVLYNNIIRAFCGMGNMDRAIHIVKEMQKER--HRPTSRTFMPII- 583 (798)
Q Consensus 512 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li- 583 (798)
|+..|...|++.+|..++..+.+.=-..| ..++..-+.+|...+++.++...+....... +.++... .+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i-~a~i~ 183 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV-QGALD 183 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH-HHHHH
Confidence 55566666666666666665554211111 2234445566666777777766666554321 1111111 1111
Q ss_pred ----HHHH-hcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 003749 584 ----HGFA-RAGEMKRALEIFDMMRRSGCIPT------VHTFNALILGLVEKRQMEKAIEILD-EMTLAGISPNEHTYTT 651 (798)
Q Consensus 584 ----~~~~-~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~~~~p~~~t~~~ 651 (798)
..+. ..++|..|...|-+..+.--..+ ...|.. +.+.....+ .+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl~~~r-~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIMLGQS-DDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHTTCG-GGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHHcCCH-HHHHHHhccccccccCCccHHHHHH
Confidence 1234 56777777666655432100001 112222 222222221 22222221 1111112344555556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003749 652 IMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGD 731 (798)
Q Consensus 652 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 731 (798)
++.+| ..+++.+...+++.... .+..|......+-..+-+. .. ..+.++.+ +-...++..|...+.- .
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~I--r~---~~L~~i~~---pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDTM--LE---QNLCRIIE---PYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHHH--HH---HHHHHHHT---TCSEEEHHHHHHHHTC--C
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHHH--HH---HHHHHHhH---hhceeeHHHHHHHHCc--C
Confidence 66554 45666666666555432 2334544221111111000 01 11111121 2233445555555532 5
Q ss_pred HHHHHHHHHHHHHcC
Q 003749 732 VWEAADLMQQMKQEG 746 (798)
Q Consensus 732 ~~~A~~~~~~m~~~g 746 (798)
.+++...+-+|+..|
T Consensus 330 ~~evE~~L~~lI~dg 344 (394)
T 3txn_A 330 MPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 778888888888765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.18 E-value=3.8 Score=48.98 Aligned_cols=192 Identities=12% Similarity=0.094 Sum_probs=101.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------hc
Q 003749 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAK--------------------ER 395 (798)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------~~ 395 (798)
.++..+.+.+.++-+.++...+ +-+......++.+|...|++++|.+.|.+.. ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3444555556665555543322 2244444555666666666666666665431 11
Q ss_pred CC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 003749 396 HA--TLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPI----DIYHMMMDGYTIIGNEEKCLIVFERLKECGFSP 469 (798)
Q Consensus 396 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (798)
.. ..-..-|.-++..+-+.+.++.+.+.-+..++.....+. ..|..+.+.+...|++++|...+..+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 01 112233455666777777777777776666654322221 25667777777777777777777776654333
Q ss_pred CHHHHHHHHHHHHHcCCH------------HHHHHHHHHH-HHC-CCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 003749 470 SIISYGCLINLYTKIGKV------------SKALEVSKVM-KSS-GIKHNMKTYSMLINGFLKLKDWANVF-AVFEDVMR 534 (798)
Q Consensus 470 ~~~~~~~li~~~~~~g~~------------~~A~~~~~~m-~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~ 534 (798)
......|+..++..|+. ++..+++..- +.. ........|..|-..+...|++..|- -+|+.+.+
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 33455555555555544 3334444322 211 11222344566666666777776654 44555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=1.4 Score=45.30 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003749 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ-----EGVQPDVHT 753 (798)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~~ 753 (798)
..++.++...|++++|...+..+.... +-+...|..||.+|.+.|+..+|++.|++..+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344555556666666666665555443 44555666666666666666666666655432 366665554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.96 E-value=2.9 Score=36.19 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARG-IEPTL-------HVYTNLIHAYAVGRDMEEALSCVRKMKE 359 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 359 (798)
.+..-+..+...|.++.|+-+.+.+.... ..++. .++..+..++...|+|..|...|++.++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34455677788888988888888766541 12231 1566677888889999999999988654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.27 E-value=21 Score=35.14 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCChhhHHHHHH
Q 003749 369 YSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALV----RDMEEEGIDAPIDIYHMMMD 444 (798)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~~~~l~~ 444 (798)
|.++..-|.+.+++++|++++.... ..+.+.|+...|.++. +-+.+.+++.+......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445556777888888888765542 2344556655544443 33444566666666666666
Q ss_pred HHHhcCCHHHH-HHHHHHHH----HCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 445 GYTIIGNEEKC-LIVFERLK----ECG--FSPSIISYGCLINLYTKIGKVSKALEVS 494 (798)
Q Consensus 445 ~~~~~g~~~~A-~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (798)
.+......+-. ..+.+++. +.| ..-|......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 65544432111 11112221 111 1224555566666677777766666655
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.73 E-value=22 Score=34.90 Aligned_cols=113 Identities=11% Similarity=0.125 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH----HHHHHcCCCCCHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCV----RKMKEEGIEMSLVTYSII 372 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~----~~m~~~g~~~~~~~~~~l 372 (798)
..|.++.+-|.+.+++++|++++..-.. .+.+.|+...|.++. +-+.+.++++|......|
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3466777778888888888887654322 233445555544443 444556677777776677
Q ss_pred HHHHHhcCCHHHH-HHHHHHHHh----cC--CCCChhhHHHHHHHHHhcCChHHHHHHH
Q 003749 373 VGGFAKMGNAEAA-DHWFEEAKE----RH--ATLNAIIYGNIIYAQCQTRNMERAEALV 424 (798)
Q Consensus 373 ~~~~~~~g~~~~A-~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 424 (798)
+..+.....-+-. ..+.++++. .| ..-+......+...|.+.+++.+|+..|
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 7766655432111 112222211 11 2235556666666677777766666555
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.21 E-value=3.5 Score=35.67 Aligned_cols=117 Identities=5% Similarity=0.035 Sum_probs=67.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCChhh
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEEG-IEMS-------LVTYSIIVGGFAKMGNAEAADHWFEEAKERH--ATLNAII 403 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 403 (798)
+-.-+..+...|.++.|+-+.+.+.... ..++ ..++..+++++...|++..|...|++.+... ..-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4445667778889999888877755321 1222 2367788899999999999999999975431 1101111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 404 YGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
...+. .. ..... ......+...-..+..+|.+.+++++|+.+++.+.
T Consensus 103 ~~~~~-~~---ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTG-NS---ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc-cc---CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 10110 00 00000 00112234455557788888888888888877653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.81 E-value=11 Score=44.95 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--------------
Q 003749 580 MPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA----G-------------- 641 (798)
Q Consensus 580 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~-------------- 641 (798)
..++..+.+.+.++.+.++.... .-+....-.+..+|...|++++|..+|.+.... .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555566666666665544322 124444344555677788888888877653210 0
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 003749 642 ----ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDV----FTYEALLKACCKSGRMQSALAVTKEMSAQKIP 713 (798)
Q Consensus 642 ----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 713 (798)
...-..-|..++..+.+.+.++.+.++-..+++....-+. ..|..+.+.+...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-- 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-- 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--
Confidence 0111234677888888888899988888877765332222 257888899999999999998888777654
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCccccccc
Q 003749 714 RNTFVYNILIDGWARRGDVWEA------------ADLMQQMKQE--GVQPDVHTYTSFINACSKAGDMQVRFSI 773 (798)
Q Consensus 714 ~~~~~~~~l~~~~~~~g~~~~A------------~~~~~~m~~~--g~~pd~~~~~~l~~~~~~~g~~~~a~~~ 773 (798)
.-......|+..++..|..++- .+++....+. .......-|..|-.-....|+...|.++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 3455667777777765555444 3333322111 0111112355555556677777777665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.55 E-value=9.7 Score=31.46 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 679 LDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
++..+--.+.+++.+..+ ..+++.+++++.+.+-......+-.|.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444445555555543 234555555555433111233444455555666666666666666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.19 E-value=4.9 Score=41.13 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 406 NIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLK 463 (798)
Q Consensus 406 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (798)
.++..+...|+.+++...+..+.... +.+...|..+|.+|...|+..+|++.|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555666666666665555543 3455566666666666666666666665553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.47 E-value=13 Score=28.96 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
+..+-++.+...++.|+..+....+.+|.|.+++..|+++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555555555555555566666666666666665555544
|
| >2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A | Back alignment and structure |
|---|
Probab=84.34 E-value=0.31 Score=42.34 Aligned_cols=42 Identities=12% Similarity=-0.042 Sum_probs=35.7
Q ss_pred CCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccccc
Q 003749 191 EKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234 (798)
Q Consensus 191 ~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~~ 234 (798)
.+.+|+++|+|.+.++|.+|++.+ .||..++| .+.+.++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~-~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQY-ANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHH-HHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHH-hcCCCCCC-ceecccccCc
Confidence 455999999999999999999854 26889999 9999988764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.04 E-value=5.3 Score=32.83 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003749 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIH 339 (798)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 339 (798)
|++......+++|-+.+|+.-|+++|+-++.+ +.+...+|..++.
T Consensus 86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 86 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 67777777778888888888888888777664 2334445555553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.62 E-value=19 Score=30.24 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003749 678 ELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD 750 (798)
Q Consensus 678 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd 750 (798)
.++..+--.+.+++.+..+ ..+++.+++++...+-.......-.|.-++.+.|++++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 3455555555566666554 345666666666533112233444556666777777777777777766 3554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.30 E-value=14 Score=38.29 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 003749 438 IYHMMMDGYTIIGNEEKCLIVFERLKEC--GFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSS---GIKHNMKT--YS 510 (798)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~--~~ 510 (798)
++..++..|.+.|+++.|.+.|.++... +..--...+-.++..+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556666666666666666666666553 11222445556666677777777777766666432 11111110 00
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 003749 511 MLINGFLKLKDWANVFAVFEDVMRD 535 (798)
Q Consensus 511 ~ll~~~~~~~~~~~a~~~~~~~~~~ 535 (798)
.-...+...++|.+|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 0111223457777777777665543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.84 E-value=11 Score=39.19 Aligned_cols=59 Identities=15% Similarity=0.002 Sum_probs=27.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 334 YTNLIHAYAVGRDMEEALSCVRKMKEE--GIEMSLVTYSIIVGGFAKMGNAEAADHWFEEA 392 (798)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 392 (798)
...+...|.+.|++++|.++|.++.+. +..--...+..++..+...+++..+...++++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444455555555555555554432 11112334444445555555555555555444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.06 E-value=15 Score=30.41 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 003749 644 PNEHTYTTIMHGYASLGD---TGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 644 p~~~t~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
++..|--.+.+++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444444444444444443 3345555555554432112333334444555555555555555555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.03 E-value=16 Score=30.05 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFIN 759 (798)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~ 759 (798)
+..+-++.+...++.|+..+....+.+|.|.+|+..|+++|+-.+.+ ......+|.-+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44445555555666667777777777777777777777777666655 2233444555544
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=80.81 E-value=0.32 Score=52.82 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=7.1
Q ss_pred CchHHHHHHhccc
Q 003749 163 IKKHLVMEFFRQF 175 (798)
Q Consensus 163 ~~~~~l~~~f~~~ 175 (798)
++.++.++++...
T Consensus 155 i~r~~ae~~L~~~ 167 (535)
T 2h8h_A 155 ITRRESERLLLNA 167 (535)
T ss_dssp CCHHHHHHHHTCT
T ss_pred cCHHHHHHHhccC
Confidence 3455666666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 798 | ||||
| d2cpha1 | 94 | d.58.7.1 (A:454-547) Probable RNA-binding protein | 5e-14 | |
| d1no8a_ | 78 | d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu | 2e-12 | |
| d1wf2a_ | 98 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 2e-11 | |
| d1h2vz_ | 93 | d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro | 2e-11 | |
| d1cvja1 | 80 | d.58.7.1 (A:11-90) Poly(A)-binding protein {Human | 2e-11 | |
| d1uawa_ | 77 | d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax | 3e-11 | |
| d2f9da1 | 114 | d.58.7.1 (A:12-125) Pre-mRNA branch site protein p | 4e-11 | |
| d2cpja1 | 86 | d.58.7.1 (A:65-150) Non-POU domain-containing octa | 2e-10 | |
| d1u2fa_ | 90 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 3e-10 | |
| d2disa1 | 96 | d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 { | 5e-10 | |
| d2msta_ | 75 | d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 | 8e-10 | |
| d1x0fa1 | 75 | d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 | 1e-09 | |
| d1b7fa2 | 85 | d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil | 1e-09 | |
| d1hd0a_ | 75 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 1e-09 | |
| d2cpfa1 | 85 | d.58.7.1 (A:362-446) Probable RNA-binding protein | 1e-09 | |
| d1x5ta1 | 83 | d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Hu | 2e-09 | |
| d2cq4a1 | 101 | d.58.7.1 (A:132-232) RNA binding protein 23 {Human | 2e-09 | |
| d1b7fa1 | 82 | d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil | 6e-09 | |
| d2ghpa1 | 81 | d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splici | 9e-09 | |
| d1x5ua1 | 93 | d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu | 9e-09 | |
| d1fxla2 | 85 | d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho | 1e-08 | |
| d1x4aa1 | 95 | d.58.7.1 (A:9-103) Splicing factor, arginine/serin | 2e-08 | |
| d1x4ba1 | 103 | d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle | 2e-08 | |
| d1l3ka1 | 84 | d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN | 4e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-08 | |
| d2ghpa3 | 86 | d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splici | 6e-08 | |
| d1fjca_ | 96 | d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice | 7e-08 | |
| d1whwa_ | 99 | d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm | 7e-08 | |
| d1cvja2 | 89 | d.58.7.1 (A:91-179) Poly(A)-binding protein {Human | 8e-08 | |
| d2u2fa_ | 85 | d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit | 1e-07 | |
| d1x4ga1 | 96 | d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s | 1e-07 | |
| d2cqba1 | 89 | d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer | 1e-07 | |
| d2cqpa1 | 86 | d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous | 1e-07 | |
| d1u6fa1 | 139 | d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa | 2e-07 | |
| d2cpea1 | 101 | d.58.7.1 (A:353-453) RNA-binding protein EWS {Huma | 2e-07 | |
| d1wi8a_ | 104 | d.58.7.1 (A:) Eukaryotic translation initiation fa | 2e-07 | |
| d2cqda1 | 103 | d.58.7.1 (A:1-103) RNA-binding region containing p | 2e-07 | |
| d1wf0a_ | 88 | d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 { | 3e-07 | |
| d2cqca1 | 83 | d.58.7.1 (A:109-191) Arginine/serine-rich splicing | 4e-07 | |
| d1fjeb1 | 91 | d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesoc | 5e-07 | |
| d2cqga1 | 90 | d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD | 5e-07 | |
| d2cqha1 | 80 | d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 is | 1e-06 | |
| d2cpza1 | 102 | d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin | 1e-06 | |
| d1l3ka2 | 79 | d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 | 1e-06 | |
| d2cqia1 | 90 | d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa | 2e-06 | |
| d1x5sa1 | 90 | d.58.7.1 (A:8-97) Cold-inducible RNA-binding prote | 2e-06 | |
| d2cpda1 | 86 | d.58.7.1 (A:223-308) APOBEC1 stimulating protein { | 2e-06 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | d.58.7.3 (A:) 2e-06 | ||
| d2cq3a1 | 93 | d.58.7.1 (A:110-202) RNA-binding protein 9 {Human | 3e-06 | |
| d1fxla1 | 82 | d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom | 3e-06 | |
| d1wg4a_ | 98 | d.58.7.1 (A:) Splicing factor, arginine/serine-ric | 3e-06 | |
| d1wg1a_ | 88 | d.58.7.1 (A:) Probable RNA-binding protein KIAA157 | 3e-06 | |
| d2cq0a1 | 90 | d.58.7.1 (A:231-320) Eukaryotic translation initia | 5e-06 | |
| d2cpia1 | 89 | d.58.7.1 (A:101-189) E3 ubiquitin protein ligase C | 1e-05 | |
| d2dita1 | 99 | d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Huma | 2e-05 | |
| d1rk8a_ | 88 | d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr | 2e-05 | |
| d2bz2a1 | 79 | d.58.7.1 (A:35-113) Negative elongation factor E, | 3e-05 | |
| d2adba1 | 108 | d.58.7.1 (A:177-284) Polypyrimidine tract-binding | 3e-05 | |
| d1nu4a_ | 91 | d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo | 3e-05 | |
| d1weza_ | 102 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 3e-05 | |
| d1zh5a2 | 85 | d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo | 3e-05 | |
| d1u1qa_ | 183 | d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1 | 5e-05 | |
| d1u1qa_ | 183 | d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1 | 6e-05 | |
| d2ghpa2 | 75 | d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicin | 6e-05 | |
| d1x4ha1 | 98 | d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse ( | 6e-05 | |
| d1p1ta_ | 104 | d.58.7.1 (A:) Cleavage stimulation factor, 64 kda | 6e-05 | |
| d1x4da1 | 89 | d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [ | 1e-04 | |
| d2cpxa1 | 102 | d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 | 1e-04 | |
| d1whya_ | 97 | d.58.7.1 (A:) Putative RNA-binding protein 15B, Rb | 2e-04 | |
| d1x4ea1 | 72 | d.58.7.1 (A:8-79) RNA-binding motif, single-strand | 6e-04 | |
| d2adca1 | 109 | d.58.7.1 (A:335-443) Polypyrimidine tract-binding | 0.001 | |
| d2cq1a1 | 88 | d.58.7.1 (A:51-138) Polypyrimidine tract-binding p | 0.001 | |
| d1wexa_ | 104 | d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot | 0.001 | |
| d2cpya1 | 103 | d.58.7.1 (A:536-638) RNA-binding protein 12 {Human | 0.002 | |
| d1wwha1 | 81 | d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus mu | 0.004 | |
| d1whxa_ | 111 | d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm | 0.004 | |
| d1x5oa1 | 101 | d.58.7.1 (A:8-108) RNA-binding motif, single-stran | 0.004 |
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.1 bits (161), Expect = 5e-14
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ KI V N+P + + E F FG +K V L K + GFGFV + K
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
A A+ +GR L ++
Sbjct: 66 KAFNAL-CHSTHLYGRRLVLEW 86
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.1 bits (148), Expect = 2e-12
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
GK+ V NL + + E F +FG +K + + V ++ A AM
Sbjct: 1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLG--TADVHFERKADALKAM 58
Query: 212 KAVEFDGVEFHGRVLTVKL 230
K +++GV GR + ++L
Sbjct: 59 K--QYNGVPLDGRPMNIQL 75
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (143), Expect = 2e-11
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 138 SLATSQEETEFRQEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
S +S + ++F+GNL +KK V F ++G I + + GF
Sbjct: 2 SSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV---------HKGF 52
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
FV Y ++A+ DG G+VL + L ++
Sbjct: 53 AFVQYVNERNARAAVA--GEDGRMIAGQVLDINLAAEPKVNRSG 94
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (142), Expect = 2e-11
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
E ++ ++VGNL + + + E F + G IK +I + + GF FV Y
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKII-MGLDKMKKTACGFCFVEYYSR 59
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A ++AM+ +G R++ D G +
Sbjct: 60 ADAENAMRY--INGTRLDDRIIRTDWDAGFK 88
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.4 bits (141), Expect = 2e-11
Identities = 14/78 (17%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++VG+L + + ++ E F GPI ++ + + +++G+ +V + PA + A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYAYVNFQQPADAERALD 60
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ G+ + +
Sbjct: 61 --TMNFDVIKGKPVRIMW 76
|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.7 bits (139), Expect = 3e-11
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+F+G L + + E+F QFG +K + + +++ GFGFV + A K
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECL-VMRDPLTKRSRGFGFVTFMDQA---GVDK 57
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ E + + K+
Sbjct: 58 VLAQSRHELDSKTIDPKV 75
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (141), Expect = 4e-11
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+++ NLP I + + F ++GPI+ + N + G +V+Y+ K+A
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIR----VGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
G R L V + R K + + +
Sbjct: 65 H--LSGFNVCNRYLVVLYYNANRAFQKMDTKKK 95
|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Non-POU domain-containing octamer-binding protein, NonO species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.7 bits (134), Expect = 2e-10
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
E F Q ++FVGNLP I + + + F ++G V K+ GFGF+ +
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-------FIHKDKGFGFIRLETR 54
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTVKL 230
+ A E D + G+ L V+
Sbjct: 55 TLAEIAKV--ELDNMPLRGKQLRVRF 78
|
| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 3e-10
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKG----YNNFEKNVGFGFVIYDGPAAEK 208
+++VGN+P I + +M+FF + + G ++ F F+ + +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFR---SVD 59
Query: 209 SAMKAVEFDGVEFHGRVLTVK 229
+A+ FDG+ F G+ L ++
Sbjct: 60 ETTQAMAFDGIIFQGQSLKIR 80
|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (132), Expect = 5e-10
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPI-KNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
++F+G +P K+ ++E + +VI+ + KN GF FV Y+ A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 212 KAVEFDGVEFHGRVLTVKL 230
+ + ++ G + V
Sbjct: 63 RKLMPGRIQLWGHQIAVDW 81
|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Neural RNA-binding protein Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (128), Expect = 8e-10
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG L V +F QFG + + +L+ FGFV ++ K
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRG-FGFVTFESEDI---VEK 56
Query: 213 AVEFDGVEFHGRVLTVKL 230
E E + +++ K
Sbjct: 57 VCEIHFHEINNKMVECKK 74
|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein D0 (AUF1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (128), Expect = 1e-09
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG L + + E+F FG +++ I + N K GF F+ + E+ K
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVES-IELPMDNKTNKRRGFCFITFK---EEEPVKK 56
Query: 213 AVEFDGVEFHGRVLTVKL 230
+E +K+
Sbjct: 57 IMEKKYHNVGLSKCEIKV 74
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 53.4 bits (128), Expect = 1e-09
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++V NLP I + F ++G I +++ FV Y+ + A+
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG-VAFVRYNKREEAQEAIS 66
Query: 213 AVEFDGVEFHG--RVLTVKL 230
A + V G + L+V+L
Sbjct: 67 A--LNNVIPEGGSQPLSVRL 84
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (127), Expect = 1e-09
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+F+G L K + ++F +FG + + L FGFV++ +S K
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG-FGFVLFK---ESESVDK 56
Query: 213 AVEFDGVEFHGRVLTVK 229
++ + +G+V+ K
Sbjct: 57 VMDQKEHKLNGKVIDPK 73
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.1 bits (127), Expect = 1e-09
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV--GFGFVIYDGPAAEKSAM 211
+F+ NL + + F + G IK+ + K N + GFGFV Y P + A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 212 KAVEFDGVEFHGRVLTVKLDD 232
K + G G L V++ +
Sbjct: 61 K--QLQGHTVDGHKLEVRISE 79
|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 2e-09
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
IF+GNL I + L+ + F FG I I + + G+ F+ + A +A++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE- 59
Query: 214 VEFDGVEFHGRVLTVKL 230
+G R +TV
Sbjct: 60 -AMNGQYLCNRPITVSY 75
|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA binding protein 23 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (127), Expect = 2e-09
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 133 RSPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEK 192
+SP + E R +F L I+ + +FF G +++V +I N+ +
Sbjct: 1 KSPVREPVDNLSPEE-RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR-R 58
Query: 193 NVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
+ G +V + S A+ G G + V+ +
Sbjct: 59 SKGIAYVEFCEIQ---SVPLAIGLTGQRLLGVPIIVQASQAEK 98
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Score = 51.5 bits (123), Expect = 6e-09
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V LP + + FR GPI +++ Y E + +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTS----EMDSQR 59
Query: 213 AVE-FDGVEFHGRVLTVKL 230
A++ +G+ + L V
Sbjct: 60 AIKVLNGITVRNKRLKVSY 78
|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.9 bits (121), Expect = 9e-09
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
E +++ N P + + + + + I + + A
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 211 MKAVEFDGVEFHGRVLTVKLDD 232
+ +G++ G L K+ +
Sbjct: 61 E---KLNGLKIEGYTLVTKVSN 79
|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (122), Expect = 9e-09
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPA 205
+E Q+ ++VG L + + L+ E F Q GP+ N + K + +GFV +
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQG-YGFVEFLSEE 62
Query: 206 AEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A+K D ++ +G+ + V
Sbjct: 63 DADYAIKI--MDMIKLYGKPIRVNKASAHN 90
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (121), Expect = 1e-08
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++V LP + + + + F Q+G I I + G GF+ +D + A+K
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSR-ILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 213 AVEFDGVEFHGRVLTVKLD 231
+G + G + +
Sbjct: 67 --GLNGQKPSGATEPITVK 83
|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (120), Expect = 2e-08
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ +I+VGNLP I+ + + F ++G I+++ L F FV ++ P +
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP----PFAFVEFEDPRDAE 67
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRR 235
A+ DG ++ G L V+ R
Sbjct: 68 DAVY--GRDGYDYDGYRLRVEFPRSGR 92
|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins A2/B1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (120), Expect = 2e-08
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 135 PSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNV 194
++ +++ E Q K+F+G L + + ++ Q+G + + + + +++
Sbjct: 4 TLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV-VMRDPASKRSR 62
Query: 195 GFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
GFGFV + + A+ GRV+ K
Sbjct: 63 GFGFVTFS---SMAEVDAAMAARPHSIDGRVVEPK 94
|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 4e-08
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYD 202
+E + R K+F+G L + F Q+G + + + + N +++ GFGFV Y
Sbjct: 1 KEPEQLR---KLFIGGLSFETTDESLRSHFEQWGTLTDCV-VMRDPNTKRSRGFGFVTYA 56
Query: 203 GPAAEKSAMKAVEFDGVEFHGRVLTVK 229
A+ + GRV+ K
Sbjct: 57 TVE---EVDAAMNARPHKVDGRVVEPK 80
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 5e-08
Identities = 56/402 (13%), Positives = 120/402 (29%), Gaps = 23/402 (5%)
Query: 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395
L H D E A ++ + + + ++ + + + H+ A ++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 396 HATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKC 455
+ A Y N+ + ++ A R D ++ E
Sbjct: 63 NPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 456 LIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLING 515
L+ + S + + +KA + + + +S L
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCV 178
Query: 516 FLKLKDWANVFAVFEDVMRDGLKPDVV-LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRP 574
F + FE + L P+ + Y N+ DRA+
Sbjct: 179 FNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPN 235
Query: 575 TSRTFMPIIHGFARAGEMKRALEIFD-MMRRSGCIPTVHTFNALILGLVEKRQMEKAIEI 633
+ + + G + A++ + + P + L L EK + +A +
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY--CNLANALKEKGSVAEAEDC 293
Query: 634 LDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELD---VFTYEALLKA 690
+ L + + + + G+ +A + K LE+ + L
Sbjct: 294 YNTA-LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA----LEVFPEFAAAHSNLASV 348
Query: 691 CCKSGRMQSALAVTKEMSAQKI-PRNTFVYNILIDGWARRGD 731
+ G++Q AL KE A +I P Y+ + + D
Sbjct: 349 LQQQGKLQEALMHYKE--AIRISPTFADAYSNMGNTLKEMQD 388
|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.6 bits (115), Expect = 6e-08
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 153 KIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+I + NL + ++L+ E F FG I+ + + G N F++++ SA
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD---SAE 62
Query: 212 KAVEFDGVEFHGRVLTVKL 230
+A++ + R ++V L
Sbjct: 63 RALQMNRSLLGNREISVSL 81
|
| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Score = 48.9 bits (116), Expect = 7e-08
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 8/100 (8%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG 195
S L + R + NL I + + E F I+ V G
Sbjct: 1 SHMLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK------G 54
Query: 196 FGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
++ + A + ++ E G E GR +++ +
Sbjct: 55 IAYIEFKSEADAEKNLE--EKQGAEIDGRSVSLYYTGEKG 92
|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.9 bits (116), Expect = 7e-08
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
G++FV NL + + + F +GP+ + + +K GF FV + P A
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELH-YPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
E DG F GR+L V ++ +++
Sbjct: 68 A--EVDGQVFQGRMLHVLPSTIKKEASQS 94
|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (115), Expect = 8e-08
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKS 209
G IF+ NL I + + F FG I + ++ N + F +++
Sbjct: 7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF------ETQEA 60
Query: 210 AMKAVE-FDGVEFHGRVLTVKLDDGRR 235
A +A+E +G+ + R + V R+
Sbjct: 61 AERAIEKMNGMLLNDRKVFVGRFKSRK 87
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (113), Expect = 1e-07
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+F+G LPN++ V E FGP+K L+K + G+ F Y A+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG-LSKGYAFCEYVDINVTDQAIA 61
Query: 213 AVEFDGVEFHGRVLTVKL 230
+G++ + L V+
Sbjct: 62 --GLNGMQLGDKKLLVQR 77
|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (114), Expect = 1e-07
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++ G + + + L+ + F FG I + + + FV + + A+
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-------YSFVRFSTHESAAHAIV 72
Query: 213 AVEFDGVEFHGRVLTV 228
+G G V+
Sbjct: 73 --SVNGTTIEGHVVKC 86
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (113), Expect = 1e-07
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
++VG L + ++ F FG I ++ + Y K+ GF FV ++ +A+
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-KHRGFAFVEFELAEDAAAAID 65
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLK 237
+ E GR + V L R+K
Sbjct: 66 --NMNESELFGRTIRVNLAKPMRIK 88
|
| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.7 bits (113), Expect = 1e-07
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
I V N+P + +++FF + I + +K YN G V ++ +A+
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK-YNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ + R + + L
Sbjct: 70 --DLNDRPIGSRKVKLVL 85
|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein UBP1 species: Trypanosoma cruzi [TaxId: 5693]
Score = 49.1 bits (116), Expect = 2e-07
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 18/151 (11%)
Query: 102 PPPPPPPPPPPAEQLQEPQSQGNDEIPDAENRSPSSSLATSQEETEFRQEGKIFVGNLPN 161
P P QLQ+ Q Q IP + L + V +P
Sbjct: 5 PLVSQYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLR------------NLMVNYIPT 52
Query: 162 WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221
+ + + + F ++GPI++V ++ + G +A++ A+ +G
Sbjct: 53 TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ-AIA--GLNGFNI 109
Query: 222 HGRVLTVKLDDGRRLKNKAEVRARWVAGNNG 252
+ L V L + A V NG
Sbjct: 110 LNKRLKVALAASGHQRPG---IAGAVGDGNG 137
|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein EWS species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 2e-07
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYN-------NFEKNVGFGFV 199
E I+V L + + + +FF+Q G +K K G V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
Y+ P K+A++ FDG +F G L V L
Sbjct: 64 SYEDPPTAKAAVE--WFDGKDFQGSKLKVSL 92
|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 4B species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (113), Expect = 2e-07
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
F+GNLP + + + EFFR + + N D S +
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED----LDSLLS 72
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
A+ + + + V + D + K+
Sbjct: 73 ALSLNEESLGNKRIRVDVADQAQDKDSG 100
|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding region containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (113), Expect = 2e-07
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 139 LATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGF 198
+ SQ++T F KIFVG LP + ++F FG I+ + + K+ G+GF
Sbjct: 1 MHGSQKDTTFT---KIFVGGLPYHTTDASLRKYFEGFGDIEEAV-VITDRQTGKSRGYGF 56
Query: 199 VIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230
V A +A +A + GR V L
Sbjct: 57 VTMADRA---AAERACKDPNPIIDGRKANVNL 85
|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (111), Expect = 3e-07
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+FVG + + + EFF Q+G + +V + F FV + +S
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVF------IPKPFRAFAFVTFADDQIAQSLCG 60
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNK 239
+ + G + + + + N
Sbjct: 61 ----EDLIIKGISVHISNAEPKHNSNS 83
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (109), Expect = 4e-07
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V L + + + E F ++GPI +V ++ + F FV ++ K A +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRG-FAFVYFENVDDAKEAKE 69
Query: 213 AVEFDGVEFHGRVLTV 228
+G+E GR + V
Sbjct: 70 --RANGMELDGRRIRV 83
|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Score = 46.1 bits (108), Expect = 5e-07
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 140 ATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFV 199
+ E +E +F+GNL + + ++ ++ + G+
Sbjct: 2 SHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDF 61
Query: 200 IYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGR 234
+ KA+E G++ G + ++ GR
Sbjct: 62 ES-----AEDLEKALELTGLKVFGNEIKLEKPKGR 91
|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (109), Expect = 5e-07
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 145 ETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP 204
+ ++ + V LP + + E+F FG + V + K + GFGFV +
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG-HSKGFGFVRFTEY 60
Query: 205 AAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKN 238
+ M GR KL + ++ ++
Sbjct: 61 ETQVKVMSQRH----MIDGRWCDCKLPNSKQSQD 90
|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Length = 80 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: IGF-II mRNA-binding protein 2 isoform A species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
K+++GNL + + + F ++ G+ FV Y A++
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS-------GYAFVDYPDQNWAIRAIE 55
Query: 213 AVEFDG-VEFHGRVLTVKLDDGRRLKN 238
G VE HG+++ V ++L++
Sbjct: 56 --TLSGKVELHGKIMEVDYSVSKKLRS 80
|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CUG triplet repeat RNA-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (107), Expect = 1e-06
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 137 SSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGF 196
S+ + + E + +F+ +LP +++ F FG + + + + F
Sbjct: 4 QSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK-VFIDKQTNLSKCF 62
Query: 197 GFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRR 235
GFV YD P + ++A++ +G + + L V+L +
Sbjct: 63 GFVSYDNPVSAQAAIQ--SMNGFQIGMKRLKVQLKRSKN 99
|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 1e-06
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
KIFVG + ++H + ++F Q+G I+ + ++ + +K F FV +D + K
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG-FAFVTFDDHDSV---DK 59
Query: 213 AVEFDGVEFHGRVLTVK 229
V +G V+
Sbjct: 60 IVIQKYHTVNGHNCEVR 76
|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (105), Expect = 2e-06
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
Q ++VGNL + + L+++ F Q GP K+ N + FV +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCK---MITEHTSNDPYCFVEFYEHRDAA 62
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
+A+ A +G + G+ + V
Sbjct: 63 AALAA--MNGRKILGKEVKVNW 82
|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cold-inducible RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (105), Expect = 2e-06
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
EGK+FVG L + + + F ++G I V+++K GFGFV ++ K A
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSR-GFGFVTFENIDDAKDA 63
Query: 211 MKAVEFDGVEFHGRVLTVKL 230
M +G GR + V
Sbjct: 64 MM--AMNGKSVDGRQIRVDQ 81
|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: APOBEC1 stimulating protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (104), Expect = 2e-06
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 9/87 (10%)
Query: 144 EETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDG 203
+E ++V NL + ++ + F P +K + FV +
Sbjct: 1 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA-------VERVKKIRDYAFVHFSN 53
Query: 204 PAAEKSAMKAVEFDGVEFHGRVLTVKL 230
AMK +G G + V L
Sbjct: 54 REDAVEAMK--ALNGKVLDGSPIEVTL 78
|
| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Splicing factor U2AF subunits domain: U2AF35 (35 KDa subunit) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (105), Expect = 2e-06
Identities = 7/78 (8%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ + + + + E ++G ++ + + + +V + + A+
Sbjct: 29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVG--NVYVKFRREEDAEKAVI 86
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ F+G+ + +L
Sbjct: 87 D--LNNRWFNGQPIHAEL 102
|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (103), Expect = 3e-06
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 141 TSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVI 200
+S ++ V N+P + + + F QFG I +V +I + F
Sbjct: 1 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE- 59
Query: 201 YDGPAAEKSAMKAVE-FDGVEFHGRVLTVKLDDGRRLKN 238
A +A E G GR + V R + N
Sbjct: 60 -----NSADADRAREKLHGTVVEGRKIEVNNATARVMTN 93
|
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 3e-06
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V LP + + F G I++ L++ + +GFV Y P + A+
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG-YGFVNYIDPKDAEKAIN 62
Query: 213 AVEFDGVEFHGRVLTVKL 230
+G+ + + V
Sbjct: 63 T--LNGLRLQTKTIKVSY 78
|
| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 9 (SFRS9) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.0 bits (103), Expect = 3e-06
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 10/95 (10%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
R + ++ V LP + + R+ G + + G G V Y +
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDV--------CYADVQKDGMGMVEYLRKEDME 64
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVR 243
A++ + D +F ++
Sbjct: 65 YALR--KLDDTKFRSHEGETSYIRVYPERSSGPSS 97
|
| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein KIAA1579 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 3e-06
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
I V NLP V + + + Y ++N FV ++A++
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLK--------YCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 213 AVEFDGVEFHGRVLTVKL 230
F F G+ L V+L
Sbjct: 59 --MFHQYSFRGKDLIVQL 74
|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 3 subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (102), Expect = 5e-06
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
I V NL ++ + E FR FG I + L K + + + A
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR----REDA 63
Query: 211 MKAVE-FDGVEFHGRVLTVKL 230
+A+ G + +L V+
Sbjct: 64 ARAIAGVSGFGYDHLILNVEW 84
|
| >d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: E3 ubiquitin protein ligase CNOT4 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.5 bits (99), Expect = 1e-05
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 150 QEGKIFVGNLPNWIKK---HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAA 206
Q+ +FV L + E+F +FG I V++ ++ + G Y
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINN-STSYAGSQGPSASAYVTYIR 65
Query: 207 EKSAMKAVE-FDGVEFHGRVLTV 228
+ A++A++ + V GR L
Sbjct: 66 SEDALRAIQCVNNVVVDGRTLKA 88
|
| >d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: HIV Tat-specific factor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (99), Expect = 2e-05
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226
+ + + + + ++ G V + P ++ DG F GR +
Sbjct: 32 IREDLRVECSKFGQIRKLLLFDRHPD--GVASVSFRDPEEADYCIQ--TLDGRWFGGRQI 87
Query: 227 TVKLDDGR 234
T + DG
Sbjct: 88 TAQAWDGT 95
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 42.0 bits (98), Expect = 2e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+FV ++ ++ + E F +G IKN+ L K A+ A
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET----HKQALAA 65
Query: 214 VE-FDGVEFHGRVLTVK 229
E +G E G+ + V
Sbjct: 66 KEALNGAEIMGQTIQVD 82
|
| >d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Negative elongation factor E, NELF-E species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (95), Expect = 3e-05
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
R+ ++V + L+ F FG I ++ + + FV Y+ +
Sbjct: 3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDL-------SMDPPRNCAFVTYEKMESAD 53
Query: 209 SAMKAVEFDGVEFHGRVLTVKL 230
A+ E +G + L V +
Sbjct: 54 QAVA--ELNGTQVESVQLKVNI 73
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (97), Expect = 3e-05
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+I V NL + ++ + F +FG + +I + N + Y P + + A
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-----TKNNQFQALLQYADPVSAQHAKL 63
Query: 213 AVEFDGVEFHGRVLTVKLD 231
DG + T+++D
Sbjct: 64 --SLDGQNIYNACCTLRID 80
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 3e-05
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 153 KIFVGNLPNWIK----KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
I++ NL IK K + F +FG I ++++ + K G FVI+ ++
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV----SRSLKMRGQAFVIFKEVSSAT 60
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
+A+++ G F+ + + ++ K +++ A+
Sbjct: 61 NALRS--MQGFPFYDKPMRIQYA-----KTDSDIIAK 90
|
| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 3e-05
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 134 SPSSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN 193
S SS ++ Q T + + LP ++ + FF P++ I I
Sbjct: 2 SSGSSGSSFQSTTGH----CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGE 57
Query: 194 VGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
F A + A+ A+ D R + + L+
Sbjct: 58 ADVEF------ATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGSG 98
|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 3e-05
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
+ +++ P + E+ G + N+ + + + G FV++D
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA--FKGSIFVVFDSIE--- 58
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDD 232
SA K VE G ++ L + D
Sbjct: 59 SAKKFVETPGQKYKETDLLILFKD 82
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 5e-05
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 143 QEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYD 202
+E + R K+F+G L + F Q+G + + ++++ N GFGFV Y
Sbjct: 1 KEPEQLR---KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR-GFGFVTYA 56
Query: 203 GPAAEKSAMKA 213
+AM A
Sbjct: 57 TVEEVDAAMNA 67
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 6e-05
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAA 206
KIFVG + ++H + ++F Q+G I+ + ++ K GF FV +D
Sbjct: 93 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT-DRGSGKKRGFAFVTFDDHD- 150
Query: 207 EKSAMKAVEFDGVEFHGRVLTVKL 230
S K V +G V+
Sbjct: 151 --SVDKIVIQKYHTVNGHNCEVRK 172
|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (92), Expect = 6e-05
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ V NLP ++ V ++F+ GPI +V + A+
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD-SLKKNFRFARIEFAR-----YDGALA 55
Query: 213 AVEFDGVEFHGRVLTVK 229
A+ + V
Sbjct: 56 AITKTHKVVGQNEIIVS 72
|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 28 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.6 bits (94), Expect = 6e-05
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 146 TEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPA 205
++ + +F+ NL ++ + E +QFG +K V + + + E + G F +
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVR-VVLHPDTEHSKGCAFAQFMTQE 61
Query: 206 AEKSAMKA----VEFDGVEFHGRVLTVKL 230
A + + A E G++ GR L V L
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDL 90
|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cleavage stimulation factor, 64 kda subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 6e-05
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
R +FVGN+P + + + F + GP+ + + K G+GF Y
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFR-LVYDRETGKPKGYGFCEYQDQETAL 64
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAEVRAR 245
SAM+ +G EF GR L V KNK E+++
Sbjct: 65 SAMR--NLNGREFSGRALRVDNAASE--KNKEELKSL 97
|
| >d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.7 bits (92), Expect = 1e-04
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 154 IFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ + + ++ +++ FG I N +++ N F+ ++A+
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN-------EAFIEMATTEDAQAAVD 63
Query: 213 AVEFDGVEFHGRVLTVKL 230
G+ + V L
Sbjct: 64 YYTTTPALVFGKPVRVHL 81
|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 41, RBM41 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 1e-04
Identities = 11/85 (12%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+++ NL + + ++ F +F K + + G F+ + A+
Sbjct: 20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTG-RMRGQAFITFPNKEIAWQALH 78
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLK 237
+G + +G++L ++ ++ +
Sbjct: 79 --LVNGYKLYGKILVIEFGKNKKQR 101
|
| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Putative RNA-binding protein 15B, Rbm15b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+++VG L + F +FG I+ + + K F ++ Y+ A ++A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTI-------DHVKGDSFAYIQYESLDAAQAACA 71
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLKNKA 240
+ G G +++D + +
Sbjct: 72 --KMRGFPLGGPDRRLRVDFAKSGPSSG 97
|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 6e-04
Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+++ L +++ + +G I + I + +A KA
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS----PSAAQKA 56
Query: 214 VE-FDGVEFHGRVL 226
V ++
Sbjct: 57 VTALKASGVQAQMA 70
|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 153 KIFVGNL-PNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAM 211
+ V NL P + + F +G ++ V ++ V + AM
Sbjct: 4 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN------ALVQMADGNQAQLAM 57
Query: 212 KAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
+G + HG+ + + L + ++ E
Sbjct: 58 SH--LNGHKLHGKPIRITLSKHQNVQLPRE 85
|
| >d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein 2, PTBP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.001
Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ + LP + + V+ FG + K F+ A + +
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVT-------NILMLKGKNQAFLELATEEAAITMVN 62
Query: 213 AVEFDGVEFHGRVLTVKLDDGRRLK 237
+ + ++ + + LK
Sbjct: 63 YYSAVTPHLRNQPIYIQYSNHKELK 87
|
| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein L-like species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.7 bits (84), Expect = 0.001
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKA 213
+ V L + + ++E +FG I V+++ V ++ + K +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR-------QALVEFENIDSAKECVTF 70
Query: 214 VEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
V G+ +R+
Sbjct: 71 AADVPVYIAGQQAFFNYSTSKRITRPGN 98
|
| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMK 212
+ N+P I K V++F +N + + +N + +G V + A K
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVL-VDNNGQGLGQALVQFKNED---DARK 65
Query: 213 AVEFDGVEFHGRVLTVKL 230
+ + +GR V +
Sbjct: 66 SERLHRKKLNGREAFVHV 83
|
| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleoporin 35 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 34.9 bits (80), Expect = 0.004
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSA 210
+ + V P + ++ F Q+G I + + Y A
Sbjct: 4 DTWVTVFGFPQASASY-ILLQFAQYGNILKH-------VMSNTGNWMHIRYQSKL---QA 52
Query: 211 MKAVEFDGVEFHGRVL 226
KA+ DG F ++
Sbjct: 53 RKALSKDGRIFGESIM 68
|
| >d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.7 bits (81), Expect = 0.004
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEK 208
R + I NLP + E F +FG + V+ + V + P +
Sbjct: 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL-------LPEGGITAIVEFLEPLEAR 60
Query: 209 SAMKAVEFDGVEFHGRVLTVKLDDGRRLKNKAE 241
A + +FH L ++ +
Sbjct: 61 KAFR--HLAYSKFHHVPLYLEWAPIGVFGAAPQ 91
|
| >d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (80), Expect = 0.004
Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 136 SSSLATSQEETEFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVG 195
+S + + + + +++ NLP + + + + FG + + ++ + G
Sbjct: 3 ASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVIST--RILRDSSGTSRG 60
Query: 196 FGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229
GF + ++ + F+G
Sbjct: 61 VGFARMESTEKCEAVIG--HFNGKFIKTPPGVSA 92
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 798 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1h2vz_ | 93 | CBP20, 20KDa nuclear cap-binding protein {Human (H | 99.82 | |
| d1b7fa1 | 82 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.82 | |
| d2cqba1 | 89 | Peptidyl-prolyl cis-trans isomerase E, N-terminal | 99.82 | |
| d1cvja1 | 80 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.82 | |
| d1uawa_ | 77 | Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | 99.82 | |
| d2u2fa_ | 85 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.81 | |
| d1x5ua1 | 93 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.81 | |
| d1rk8a_ | 88 | RNA-binding protein 8 {Fruit fly (Drosophila melan | 99.81 | |
| d2cpza1 | 102 | CUG triplet repeat RNA-binding protein 1 {Human (H | 99.81 | |
| d1fxla1 | 82 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.81 | |
| d2cq4a1 | 101 | RNA binding protein 23 {Human (Homo sapiens) [TaxI | 99.81 | |
| d2cq0a1 | 90 | Eukaryotic translation initiation factor 3 subunit | 99.81 | |
| d1no8a_ | 78 | Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 | 99.8 | |
| d1l3ka1 | 84 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.8 | |
| d2cqga1 | 90 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.79 | |
| d2ghpa1 | 81 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.79 | |
| d1whwa_ | 99 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.79 | |
| d1fxla2 | 85 | Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 | 99.79 | |
| d1hd0a_ | 75 | Heterogeneous nuclear ribonucleoprotein d0 {Human | 99.79 | |
| d1x4ba1 | 103 | Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu | 99.79 | |
| d1u6fa1 | 139 | RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId | 99.79 | |
| d2cqca1 | 83 | Arginine/serine-rich splicing factor 10 {Human (Ho | 99.79 | |
| d1b7fa2 | 85 | Sex-lethal protein {Drosophila melanogaster [TaxId | 99.78 | |
| d2ghpa3 | 86 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.78 | |
| d1x0fa1 | 75 | Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s | 99.78 | |
| d1x5sa1 | 90 | Cold-inducible RNA-binding protein {Human (Homo sa | 99.78 | |
| d2cpha1 | 94 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.78 | |
| d1x5ta1 | 83 | Splicing factor 3B subunit 4 {Human (Homo sapiens) | 99.77 | |
| d1p1ta_ | 104 | Cleavage stimulation factor, 64 kda subunit {Human | 99.77 | |
| d2cqda1 | 103 | RNA-binding region containing protein 1 {Human (Ho | 99.77 | |
| d2cq3a1 | 93 | RNA-binding protein 9 {Human (Homo sapiens) [TaxId | 99.77 | |
| d2cpfa1 | 85 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.76 | |
| d2cqia1 | 90 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.76 | |
| d1l3ka2 | 79 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.76 | |
| d2disa1 | 96 | Hypothetical protein FLJ20273 {Human (Homo sapiens | 99.75 | |
| d2msta_ | 75 | Neural RNA-binding protein Musashi-1 {Mouse (Mus m | 99.75 | |
| d1cvja2 | 89 | Poly(A)-binding protein {Human (Homo sapiens) [Tax | 99.75 | |
| d1x4ha1 | 98 | RNA-binding protein 28 {Mouse (Mus musculus) [TaxI | 99.74 | |
| d2cpja1 | 86 | Non-POU domain-containing octamer-binding protein, | 99.74 | |
| d1x4ga1 | 96 | Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 | 99.74 | |
| d1x4aa1 | 95 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.74 | |
| d1fjeb1 | 91 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.73 | |
| d1x5oa1 | 101 | RNA-binding motif, single-stranded-interacting pro | 99.72 | |
| d2cpea1 | 101 | RNA-binding protein EWS {Human (Homo sapiens) [Tax | 99.72 | |
| d2f9da1 | 114 | Pre-mRNA branch site protein p14 {Human (Homo sapi | 99.72 | |
| d2cpia1 | 89 | E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc | 99.71 | |
| d2cpxa1 | 102 | RNA-binding protein 41, RBM41 {Human (Homo sapiens | 99.71 | |
| d1zh5a2 | 85 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.71 | |
| d1x4ea1 | 72 | RNA-binding motif, single-stranded-interacting pro | 99.71 | |
| d1wi8a_ | 104 | Eukaryotic translation initiation factor 4B {Human | 99.7 | |
| d2cqha1 | 80 | IGF-II mRNA-binding protein 2 isoform A {Human (Ho | 99.7 | |
| d2bz2a1 | 79 | Negative elongation factor E, NELF-E {Human (Homo | 99.7 | |
| d2b0ga1 | 83 | Splicesomal U1A protein {Drosophila melanogaster [ | 99.7 | |
| d1nu4a_ | 91 | Splicesomal U1A protein {Human (Homo sapiens) [Tax | 99.69 | |
| d1fjca_ | 96 | Nucleolin {Golden hamster (Mesocricetus auratus) [ | 99.69 | |
| d2cpda1 | 86 | APOBEC1 stimulating protein {Human (Homo sapiens) | 99.69 | |
| d2adca2 | 88 | Polypyrimidine tract-binding protein {Human (Homo | 99.68 | |
| d1wf2a_ | 98 | Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu | 99.68 | |
| d2cq1a1 | 88 | Polypyrimidine tract-binding protein 2, PTBP2 {Hum | 99.67 | |
| d1whxa_ | 111 | Probable RNA-binding protein 19, Rbm19 {Mouse (Mus | 99.67 | |
| d3begb1 | 87 | Splicing factor, arginine/serine-rich 1, SFRS1 {Hu | 99.67 | |
| d2ghpa2 | 75 | U4/U6 snRNA-associated-splicing factor PRP24 {Bake | 99.67 | |
| d1wg1a_ | 88 | Probable RNA-binding protein KIAA1579 {Human (Homo | 99.66 | |
| d1wi6a1 | 75 | Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M | 99.66 | |
| d2cqpa1 | 86 | RNA-binding protein 12 {Mouse (Mus musculus) [TaxI | 99.66 | |
| d1whya_ | 97 | Putative RNA-binding protein 15B, Rbm15b {Mouse (M | 99.66 | |
| d2adca1 | 109 | Polypyrimidine tract-binding protein {Human (Homo | 99.66 | |
| d1wf0a_ | 88 | TAR DNA-binding protein 43, TDP-43 {Human (Homo sa | 99.65 | |
| d1wg5a_ | 104 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.64 | |
| d1x4fa1 | 99 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.64 | |
| d1wg4a_ | 98 | Splicing factor, arginine/serine-rich 9 (SFRS9) {M | 99.64 | |
| d1wexa_ | 104 | Heterogeneous nuclear ribonucleoprotein L-like {Mo | 99.63 | |
| d1weza_ | 102 | Heterogeneous nuclear ribonucleoprotein H' {Human | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d2cpya1 | 103 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.61 | |
| d2adba1 | 108 | Polypyrimidine tract-binding protein {Human (Homo | 99.6 | |
| d1wela1 | 112 | RNA-binding protein 12 {Human (Homo sapiens) [TaxI | 99.6 | |
| d1x4da1 | 89 | Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | 99.59 | |
| d1weya_ | 104 | Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 | 99.58 | |
| d1u2fa_ | 90 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.58 | |
| U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_ | 104 | U2 | 99.54 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.49 | |
| d2cq2a1 | 101 | Alkylation repair AlkB homolog 8, ALKBH8 {Human (H | 99.43 | |
| d1owxa_ | 113 | Lupus LA protein {Human (Homo sapiens) [TaxId: 960 | 99.42 | |
| d1wwha1 | 81 | Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090 | 99.39 | |
| d2dita1 | 99 | HIV Tat-specific factor 1 {Human (Homo sapiens) [T | 99.35 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.31 | |
| d1u1qa_ | 183 | Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human | 99.31 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.31 | |
| d1o0pa_ | 104 | Splicing factor U2AF 65 KDa subunit {Human (Homo s | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.08 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.39 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.27 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.27 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.16 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.95 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.93 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.93 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.92 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.74 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.69 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.6 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.44 | |
| d1ufwa_ | 95 | Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606] | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.3 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.2 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.98 | |
| d2dgxa1 | 73 | Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960 | 96.97 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.86 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.85 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.79 | |
| d1uw4a_ | 91 | RNA processing protein UPF3x, RRM domain {Human (H | 95.97 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.75 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.46 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.28 | |
| d1whva_ | 100 | Poly(A)-specific ribonuclease PARN {Mouse (Mus mus | 90.74 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.6 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.61 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.2e-22 Score=211.41 Aligned_cols=382 Identities=14% Similarity=0.044 Sum_probs=167.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
.+.+.+.|++++|+++|+++.+.. +.+..++..+..+|.+.|++++|+..|+++++.. +-+..+|..++.+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 344445555555555555555442 2234444455555555555555555555554432 12344445555555555555
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003749 383 EAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERL 462 (798)
Q Consensus 383 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (798)
++|+..+..+...... +...+..........+....+...........
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 131 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------------------------------
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccc-------------------------------
Confidence 5555555444443221 22222222222223333333332222222221
Q ss_pred HHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003749 463 KECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVV 542 (798)
Q Consensus 463 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 542 (798)
. ................+....+...+.+..... +.+...+..+...+...+++++|...+++..+.... +..
T Consensus 132 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T d1w3ba_ 132 ----P-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp ----T-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ----c-ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHH
Confidence 1 122222333333344444444444444443322 123334444444444455555555555544443322 344
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 543 LYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLV 622 (798)
Q Consensus 543 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 622 (798)
.|..+...+...|++++|+..+++....... +...+..+...+.+.|++++|+..|+++.+.... +...+..+...+.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4445555555555555555555554443322 2333444444445555555555555554443222 3444444444555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003749 623 EKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALA 702 (798)
Q Consensus 623 ~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 702 (798)
..|++++|++.++...... +.+...+..+..++...|++++|++.|+++++.... +..++..+..+|.+.|++++|..
T Consensus 283 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555554444332 233444444444555555555555555554443322 34444444555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003749 703 VTKEMSAQKIPRNTFVYNILIDGWARRG 730 (798)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (798)
.|+++++.+ +.+...|..|+.+|.+.|
T Consensus 361 ~~~~al~l~-P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 361 HYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 555544433 233444444554444444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.5e-22 Score=208.38 Aligned_cols=373 Identities=10% Similarity=0.030 Sum_probs=243.7
Q ss_pred ccHHHHHHHHHhhc--C-CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 003749 279 ENWQAVVSAFERIK--K-PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVR 355 (798)
Q Consensus 279 ~~~~~~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (798)
+.+..++..|.+.- . -+...+..+..+|.+.|++++|+..|+++++.. +.+..+|..+..+|.+.|++++|+..+.
T Consensus 13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~ 91 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccc
Confidence 45777777776642 2 357788999999999999999999999999874 4567899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003749 356 KMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAP 435 (798)
Q Consensus 356 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 435 (798)
.+.+... .+...+......+...+....+............. ...............+....+...+.+..... +.+
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (388)
T d1w3ba_ 92 HALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred ccccccc-ccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccC-cch
Confidence 9998753 36666677777777777777777777766655333 55555566667777888888888887777654 334
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003749 436 IDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLING 515 (798)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 515 (798)
...+..+...+...|++++|...+++..+.... +..+|..+..++...|++++|+..+.+....+ ..+...+..+...
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 246 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHH
Confidence 566666777777777777777777776654322 44556666666666666666666666655543 2234444445555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHH
Q 003749 516 FLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 595 (798)
Q Consensus 516 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 595 (798)
|.+.|++++|+..|++..+.... + ..++..+...+.+.|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~al~~~p~-~-----------------------------------~~~~~~l~~~~~~~~~~~~A 290 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYRRAIELQPH-F-----------------------------------PDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSS-C-----------------------------------HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-C-----------------------------------HHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555554443222 3 33444455555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 596 LEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNE 675 (798)
Q Consensus 596 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~ 675 (798)
+..++.+..... .+...+..+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|+++++.
T Consensus 291 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 291 EDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHhhhccCC-ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555554422 245555556666666666666666666665542 234455666666666666777777766666655
Q ss_pred CCCCCHHHHHHHHHHHHHcCC
Q 003749 676 GLELDVFTYEALLKACCKSGR 696 (798)
Q Consensus 676 ~~~~~~~~~~~l~~~~~~~g~ 696 (798)
... +...|..|+.+|.+.||
T Consensus 369 ~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 369 SPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTT-CHHHHHHHHHHHHHTCC
T ss_pred CCC-CHHHHHHHHHHHHHcCC
Confidence 432 45566666666666554
|
| >d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CBP20, 20KDa nuclear cap-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=7.7e-21 Score=150.81 Aligned_cols=86 Identities=26% Similarity=0.480 Sum_probs=80.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.++++|||||||+++|+++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|..|++.| ||..++|++|+|
T Consensus 5 ~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~gr~i~V 81 (93)
T d1h2vz_ 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD-KMKKTACGFCFVEYYSRADAENAMRYI--NGTRLDDRIIRT 81 (93)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHT--TTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccc-cccccccceEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 45679999999999999999999999999999999999 889999999999999999999999999 999999999999
Q ss_pred ecccccchh
Q 003749 229 KLDDGRRLK 237 (798)
Q Consensus 229 ~~~~~~~~~ 237 (798)
+|+.+...+
T Consensus 82 ~~a~~~~~g 90 (93)
T d1h2vz_ 82 DWDAGFKEG 90 (93)
T ss_dssp EEESCCCTT
T ss_pred EEcCCCCCC
Confidence 999776543
|
| >d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.82 E-value=6e-21 Score=148.34 Aligned_cols=81 Identities=20% Similarity=0.423 Sum_probs=77.5
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+++|||||||.++++++|+++|++||.|++++++++ +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~~g~~~g~afV~f~~~~~A~~ai~~l--ng~~~~g~~l~v~~ 78 (82)
T d1b7fa1 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD-YKTGYSYGYAFVDFTSEMDSQRAIKVL--NGITVRNKRLKVSY 78 (82)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE-TTTTEECSEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeee-cccCCccccceEEECCHHHHHHHHHHh--CCCEECCEEEEEEE
Confidence 458999999999999999999999999999999998 889999999999999999999999999 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
++|.
T Consensus 79 a~pg 82 (82)
T d1b7fa1 79 ARPG 82 (82)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9863
|
| >d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=9.4e-21 Score=149.23 Aligned_cols=82 Identities=24% Similarity=0.452 Sum_probs=78.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.+|+++.| +.+|+++|||||+|.+.++|.+|++.+ ||..++|+.|+|++
T Consensus 5 ~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~~~~~kg~afV~f~~~~~A~~ai~~l--~~~~i~g~~l~v~~ 81 (89)
T d2cqba1 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD-YETEKHRGFAFVEFELAEDAAAAIDNM--NESELFGRTIRVNL 81 (89)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC-SSSCCCSSEEEECCSSHHHHHHHHHHH--TTEEETTEEEEEEE
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccc-cccccccceeEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 459999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+++++
T Consensus 82 a~p~~ 86 (89)
T d2cqba1 82 AKPMR 86 (89)
T ss_dssp CCCCC
T ss_pred eCCCC
Confidence 98764
|
| >d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.3e-20 Score=145.07 Aligned_cols=78 Identities=18% Similarity=0.414 Sum_probs=75.2
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++|+++|+++|++||+|.+++|++| +.+|+++|||||+|.++++|.+|++.| ||..++||+|+|.++
T Consensus 1 aslfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~~g~aFV~f~~~~~a~~ai~~l--~g~~~~gr~i~v~~a 77 (80)
T d1cvja1 1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD-MITRRSLGYAYVNFQQPADAERALDTM--NFDVIKGKPVRIMWS 77 (80)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHTTS--TTCEETTEECEEEEC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEec-ccccCCCCceEEEECCHHHHHHHHHHc--CCCEECCEEEEEEEe
Confidence 37999999999999999999999999999999999 889999999999999999999999999 999999999999998
Q ss_pred c
Q 003749 232 D 232 (798)
Q Consensus 232 ~ 232 (798)
+
T Consensus 78 ~ 78 (80)
T d1cvja1 78 Q 78 (80)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=8.4e-21 Score=143.94 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=73.0
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
|+|||||||+++++++|+++|++||.|.++++++| +.||++||||||+|.+.++|.+|++ + |++.++||.|+|+.|
T Consensus 1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~kG~aFV~f~~~~~a~~al~-~--~~~~i~Gr~i~V~~A 76 (77)
T d1uawa_ 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD-PLTKRSRGFGFVTFMDQAGVDKVLA-Q--SRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC-CCSSSCSSEEEECCCCTTHHHHHHH-T--TTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecc-cCCCCccceEEEEECCHHHHHHHHH-c--CCCEECCeEEEEEEC
Confidence 68999999999999999999999999999999999 8999999999999999999999996 6 999999999999876
|
| >d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.6e-20 Score=146.12 Aligned_cols=81 Identities=26% Similarity=0.509 Sum_probs=77.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||||||.++|+++|+++|++||+|.++++++| +.||+++|||||+|.++++|..|++.| ||..++|++|+|+++
T Consensus 2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d-~~tg~~rg~aFV~f~~~~~A~~a~~~l--~~~~l~g~~l~V~~A 78 (85)
T d2u2fa_ 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD-SATGLSKGYAFCEYVDINVTDQAIAGL--NGMQLGDKKLLVQRA 78 (85)
T ss_dssp CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECC-CSSSCCCCEEEEEESSSHHHHHHHHTS--SSCCCSSSCCEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCccceEEeecc-ccccccceeEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEC
Confidence 48999999999999999999999999999999999 899999999999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
++..
T Consensus 79 ~~~~ 82 (85)
T d2u2fa_ 79 SVGA 82 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
|
| >d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.6e-20 Score=148.98 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=78.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||.++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|++
T Consensus 9 ~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d-~~tg~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 85 (93)
T d1x5ua1 9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD-RVTGQHQGYGFVEFLSEEDADYAIKIM--DMIKLYGKPIRVNK 85 (93)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCSBCSCEEEEESSHHHHHHHHHHS--SSCBCSSCBCEEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeec-ccccccccceEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 468999999999999999999999999999999999 889999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
|+++.
T Consensus 86 A~~~~ 90 (93)
T d1x5ua1 86 ASAHN 90 (93)
T ss_dssp TTTTS
T ss_pred cCCCC
Confidence 98764
|
| >d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 8 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.81 E-value=1.9e-20 Score=146.98 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=77.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
++.+|||+|||.++++++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|+..| ||..++|+.|+|+
T Consensus 6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d-~~tg~~~g~afV~f~~~~~A~~A~~~l--ng~~l~g~~l~V~ 82 (88)
T d1rk8a_ 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD-RRTGFSKGYALVEYETHKQALAAKEAL--NGAEIMGQTIQVD 82 (88)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTSSEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccccccccc-ccccccccceeEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4458999999999999999999999999999999999 889999999999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
|+.++
T Consensus 83 ~a~~k 87 (88)
T d1rk8a_ 83 WCFVK 87 (88)
T ss_dssp ESEEC
T ss_pred EecCC
Confidence 99765
|
| >d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: CUG triplet repeat RNA-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3.2e-20 Score=150.12 Aligned_cols=83 Identities=22% Similarity=0.481 Sum_probs=79.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
++++|||+|||+++++++|+++|++||.|.+++++.+ +.+|++||||||+|.+.++|..|++.| ||..|+|++|+|+
T Consensus 17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~-~~~g~~kG~afV~f~~~~~A~~Ai~~l--ng~~~~g~~i~V~ 93 (102)
T d2cpza1 17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFID-KQTNLSKCFGFVSYDNPVSAQAAIQSM--NGFQIGMKRLKVQ 93 (102)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHH--TTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhccccccceeee-cccCCCccceEEEeCCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3468999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 94 ~a~~k~ 99 (102)
T d2cpza1 94 LKRSKN 99 (102)
T ss_dssp CCCCSC
T ss_pred EeCCCC
Confidence 998875
|
| >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.8e-20 Score=144.63 Aligned_cols=79 Identities=20% Similarity=0.463 Sum_probs=76.3
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||.++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.++|.+|++.| ||..++|++|+|++|
T Consensus 3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~A 79 (82)
T d1fxla1 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD-KITGQSLGYGFVNYIDPKDAEKAINTL--NGLRLQTKTIKVSYA 79 (82)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCcccccceee-ccCCCceeeEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEe
Confidence 47999999999999999999999999999999998 888999999999999999999999999 999999999999999
Q ss_pred cc
Q 003749 232 DG 233 (798)
Q Consensus 232 ~~ 233 (798)
+|
T Consensus 80 kP 81 (82)
T d1fxla1 80 RP 81 (82)
T ss_dssp CC
T ss_pred eC
Confidence 86
|
| >d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA binding protein 23 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3.1e-20 Score=149.11 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=76.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|+.||.|.+|++++| +.+|++||||||+|.+.++|.+|++ | ||..|+|+.|+|++
T Consensus 18 ~~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d-~~tg~~kG~afV~F~~~e~a~~A~~-l--~g~~~~G~~l~V~~ 93 (101)
T d2cq4a1 18 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD-RNSRRSKGIAYVEFCEIQSVPLAIG-L--TGQRLLGVPIIVQA 93 (101)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS-CCSSSCCCCEEEEESCGGGHHHHHH-H--TTEEETTEEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeec-CCCccccceEEEEECCHHHHHHHHH-H--CCCEECCEEEEEEE
Confidence 358999999999999999999999999999999999 8899999999999999999999995 8 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+++++
T Consensus 94 a~~~~ 98 (101)
T d2cq4a1 94 SQAEK 98 (101)
T ss_dssp HHHHH
T ss_pred CCCCC
Confidence 86553
|
| >d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 3 subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.2e-20 Score=147.39 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=78.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.+++++.| +.+|+++|||||+|.+.++|.+|++.| ||..++|+.|+|+
T Consensus 7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d-~~t~~~rg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~i~v~ 83 (90)
T d2cq0a1 7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD-KTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNVE 83 (90)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHHT--TTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccccccccc-ccccccccceeEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 3468999999999999999999999999999999998 889999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 84 ~akp~~ 89 (90)
T d2cq0a1 84 WAKPST 89 (90)
T ss_dssp ESSCCC
T ss_pred eeeCCC
Confidence 998873
|
| >d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear factor Aly species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=6.5e-20 Score=140.06 Aligned_cols=78 Identities=27% Similarity=0.437 Sum_probs=73.8
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||+|||+++++++|+++|++||.|.++++..+ .+|+++|||||+|.+.++|.+|++.+ ||..++||+|+|+++
T Consensus 1 grl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~--~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~l~g~~l~V~~a 76 (78)
T d1no8a_ 1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD--RSGRSLGTADVHFERKADALKAMKQY--NGVPLDGRPMNIQLV 76 (78)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCS--SCCCSCCEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe--eccccceeEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEEe
Confidence 37999999999999999999999999999999987 38999999999999999999999999 999999999999998
Q ss_pred cc
Q 003749 232 DG 233 (798)
Q Consensus 232 ~~ 233 (798)
.+
T Consensus 77 ~S 78 (78)
T d1no8a_ 77 TS 78 (78)
T ss_dssp CC
T ss_pred eC
Confidence 53
|
| >d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.4e-20 Score=141.41 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=73.5
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.++|.+|++ + +++.|+||.|+|+.
T Consensus 6 ~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~kG~afV~f~~~~~a~~ai~-~--~~~~i~Gr~i~V~~ 81 (84)
T d1l3ka1 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMN-A--RPHKVDGRVVEPKR 81 (84)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHH-T--CSCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhhccccceeeccc-ccCCCcccEEEEEEcCHHHHHHHHH-h--CCCEECCEEEEEEe
Confidence 358999999999999999999999999999999999 8999999999999999999999996 4 78999999999988
Q ss_pred cc
Q 003749 231 DD 232 (798)
Q Consensus 231 ~~ 232 (798)
|.
T Consensus 82 A~ 83 (84)
T d1l3ka1 82 AV 83 (84)
T ss_dssp CC
T ss_pred ee
Confidence 74
|
| >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.1e-19 Score=142.24 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=75.0
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+++|+++|+++|++||.|.+|+|++| +.||++||||||+|.+.++|.+|++. +..|+||.|.|+
T Consensus 7 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~srG~aFV~f~~~~~a~~al~~----~~~l~Gr~i~v~ 81 (90)
T d2cqga1 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD-LKTGHSKGFGFVRFTEYETQVKVMSQ----RHMIDGRWCDCK 81 (90)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC-SSSCSEEEEEEEEESSHHHHHHHHHS----CEEETTEEEEEE
T ss_pred CCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccC-CCCcccCCEEEEEECCHHHHHHHHhc----CCccCCEEeEEE
Confidence 3458999999999999999999999999999999999 88999999999999999999999974 458999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.++.
T Consensus 82 ~a~~k~ 87 (90)
T d2cqga1 82 LPNSKQ 87 (90)
T ss_dssp CCCTTC
T ss_pred eCCCCC
Confidence 998764
|
| >d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=5.2e-20 Score=142.41 Aligned_cols=80 Identities=13% Similarity=0.321 Sum_probs=70.0
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++|+++|+++|++||.|..+.++.+ +.+|+++|||||+|.+.++|.+|++.| ||..++|++|+|++
T Consensus 1 d~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afV~f~~~e~A~~Ai~~l--~g~~~~g~~i~V~~ 77 (81)
T d2ghpa1 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS-LRFNTSRRFAYIDVTSKEDARYCVEKL--NGLKIEGYTLVTKV 77 (81)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CcEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecc-cccccccceeEEEECCHHHHHHHHHHh--CCCEECCEEEEEEE
Confidence 369999999999999999999999999999988887 778999999999999999999999999 99999999999999
Q ss_pred ccc
Q 003749 231 DDG 233 (798)
Q Consensus 231 ~~~ 233 (798)
++|
T Consensus 78 a~P 80 (81)
T d2ghpa1 78 SNP 80 (81)
T ss_dssp CCC
T ss_pred ccC
Confidence 976
|
| >d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=7.5e-20 Score=147.48 Aligned_cols=82 Identities=28% Similarity=0.450 Sum_probs=78.5
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.++|.+|++.| ||..|+||.|+|.+
T Consensus 8 ~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d-~~tg~~~g~afV~f~~~~~a~~A~~~l--~g~~~~gr~i~V~~ 84 (99)
T d1whwa_ 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID-SLTKKPKGFAFVTFMFPEHAVKAYAEV--DGQVFQGRMLHVLP 84 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC-TTTCCCCSEEEEEESSHHHHHHHHHHT--TTEESSSCEEEEEE
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCceeeeeccc-ccccccCcceEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 458999999999999999999999999999999998 889999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++.+.
T Consensus 85 a~~~~ 89 (99)
T d1whwa_ 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98775
|
| >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hu antigen D (Hud) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=6.7e-20 Score=142.68 Aligned_cols=78 Identities=23% Similarity=0.469 Sum_probs=73.2
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc--eeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLTV 228 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~v 228 (798)
+++|||||||+++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.++|.+|++.| ||..++| ++|+|
T Consensus 6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d-~~~g~~kg~afV~f~~~~~a~~Ai~~l--ng~~~~G~~~~i~V 82 (85)
T d1fxla2 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD-QVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPITV 82 (85)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccc-cccccCCCeeEEEEcCHHHHHHHHHHh--CCCEeCCCCEEEEE
Confidence 458999999999999999999999999999999998 889999999999999999999999999 9999998 45888
Q ss_pred ecc
Q 003749 229 KLD 231 (798)
Q Consensus 229 ~~~ 231 (798)
+||
T Consensus 83 ~~A 85 (85)
T d1fxla2 83 KFA 85 (85)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
|
| >d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein d0 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=6.6e-20 Score=138.63 Aligned_cols=75 Identities=24% Similarity=0.461 Sum_probs=71.0
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+|||||||+++++++|+++|++||.|.++++.+| +.+|+++|||||+|.+.++|.+|++ + ++..|+||.|+|+.|
T Consensus 1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d-~~t~~~kg~afV~f~~~~~a~~Al~-~--~~~~l~Gr~i~V~rA 75 (75)
T d1hd0a_ 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLD-PITGRSRGFGFVLFKESESVDKVMD-Q--KEHKLNGKVIDPKRA 75 (75)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCB-TTTTBCCSEEEEEESSHHHHHHHHH-T--CCCCBTTBCCEECCC
T ss_pred CEEEeCCCCcCCHHHHHHHHHhhccccccccccC-CCCCCcCceEEEEECCHHHHHHHHh-c--CCCEECCCEEEeeEC
Confidence 5899999999999999999999999999999999 8899999999999999999999997 5 899999999999754
|
| >d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins A2/B1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.2e-19 Score=145.95 Aligned_cols=81 Identities=23% Similarity=0.454 Sum_probs=76.3
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.++.|.+| +.+++++|||||+|.+.++|.+|++ + +|..|+||.|.|++
T Consensus 20 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d-~~~~~~kg~aFV~f~~~~~a~~al~-~--~~~~l~G~~i~V~~ 95 (103)
T d1x4ba1 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD-PASKRSRGFGFVTFSSMAEVDAAMA-A--RPHSIDGRVVEPKR 95 (103)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC-TTTSSCCSEEEEECSSHHHHHHHHT-S--CSEEETTEEEEEEC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhhCcccceeeccc-ccCCCccCeEEEEECCHHHHHHHHH-h--CCCeECCEEEEEEE
Confidence 358999999999999999999999999999999999 8899999999999999999999995 5 89999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+.++.
T Consensus 96 a~~ke 100 (103)
T d1x4ba1 96 AVARE 100 (103)
T ss_dssp CSSCC
T ss_pred CcccC
Confidence 98874
|
| >d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein UBP1 species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.79 E-value=2.9e-19 Score=154.68 Aligned_cols=81 Identities=20% Similarity=0.496 Sum_probs=77.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++++++|+++|++||.|++|+|++| +.||+++|||||+|.+.++|.+|++.| ||+.|+||.|+|+++
T Consensus 43 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~t~~~rg~afV~f~~~~~A~~Ai~~l--ng~~~~gr~l~V~~a 119 (139)
T d1u6fa1 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD-RETRQSRGYGFVKFQSGSSAQQAIAGL--NGFNILNKRLKVALA 119 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEE-TTTTEEEEEEEEEESSHHHHHHHHHHT--TTEECSSCEEEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhccccccccccc-cccccccceeeEEECCHHHHHHHHHHh--CCCEECCEEEEEEEc
Confidence 48999999999999999999999999999999999 889999999999999999999999999 999999999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
+++.
T Consensus 120 ~~~~ 123 (139)
T d1u6fa1 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7664
|
| >d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Arginine/serine-rich splicing factor 10 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.4e-19 Score=140.59 Aligned_cols=76 Identities=25% Similarity=0.460 Sum_probs=72.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+.++|||||||+++|+++|+++|++||.|.+|++++| +.+|+++|||||+|.+.++|.+|++.| ||..++||+|+|
T Consensus 8 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~gr~i~V 83 (83)
T d2cqca1 8 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD-QQSRRSRGFAFVYFENVDDAKEAKERA--NGMELDGRRIRV 83 (83)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC-SSSSSEEEEEEEEESSHHHHHHHHHHH--TTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCCcccccccc-ccccccccceEEEECCHHHHHHHHHHc--CCCEECCEEeEC
Confidence 3468999999999999999999999999999999998 889999999999999999999999999 999999999987
|
| >d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Sex-lethal protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.78 E-value=1.3e-19 Score=141.38 Aligned_cols=79 Identities=24% Similarity=0.449 Sum_probs=74.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc--eeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~ 227 (798)
++++|||+|||.++++++|+++|++||.|.++++++| +.+|+++|||||+|.+.++|.+|++.| ||..+.| ++|+
T Consensus 5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d-~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~~~l~ 81 (85)
T d1b7fa2 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD-KLTGRPRGVAFVRYNKREEAQEAISAL--NNVIPEGGSQPLS 81 (85)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHH--TTCCCTTCSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecc-cccccCceeEEEEECCHHHHHHHHHHH--CCCEeCCCCeEEE
Confidence 3458999999999999999999999999999999999 889999999999999999999999999 9999987 8899
Q ss_pred eecc
Q 003749 228 VKLD 231 (798)
Q Consensus 228 v~~~ 231 (798)
|++|
T Consensus 82 V~~A 85 (85)
T d1b7fa2 82 VRLA 85 (85)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9886
|
| >d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.1e-19 Score=141.76 Aligned_cols=82 Identities=21% Similarity=0.400 Sum_probs=71.9
Q ss_pred cccceeecCCCccCch-HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNWIKK-HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~-~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++++|||||||+++++ ++|+++|++||.|.+|+|..+++.+|+++|||||+|.+.++|.+|++ | ||+.++||.|+|
T Consensus 3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~--n~~~~~gr~l~V 79 (86)
T d2ghpa3 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-M--NRSLLGNREISV 79 (86)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-G--TTEEETTEEEEE
T ss_pred CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHh-c--CCCEECCEEEEE
Confidence 3569999999999865 56999999999999999988757899999999999999999999995 8 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
++++++
T Consensus 80 ~~a~~k 85 (86)
T d2ghpa3 80 SLADKK 85 (86)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999764
|
| >d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein D0 (AUF1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=7.3e-20 Score=137.53 Aligned_cols=75 Identities=25% Similarity=0.380 Sum_probs=70.6
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+|||||||+++|+++|+++|++||.|.+|++.+| +.+|++||||||+|.+.++|.+|++. +++.++|+.|.|+.|
T Consensus 1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d-~~t~~~rG~~FV~f~~~~~a~~al~~---~~~~i~g~~i~vk~A 75 (75)
T d1x0fa1 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFITFKEEEPVKKIMEK---KYHNVGLSKCEIKVA 75 (75)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHSCEEEEECCCC-TTTCCTTCCEEEEESSSHHHHHHTTC---SSCCBTTBCCEEECC
T ss_pred CEEEcCCCCCCCHHHHHHHHHHhCCccccccccc-ccccccccEEEEEECCHHHHHHHHhh---CCCEECCEEeEEEEC
Confidence 5899999999999999999999999999999999 88999999999999999999999964 688999999999865
|
| >d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cold-inducible RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.1e-19 Score=143.83 Aligned_cols=83 Identities=30% Similarity=0.576 Sum_probs=78.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||+++++++|+++|++||.|..+.++.+ +.+|+++|||||+|.+.++|.+|+..| ||+.|+|++|+|+
T Consensus 4 ~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~~~~g~afV~f~~~~~a~~Ai~~l--~~~~~~g~~l~V~ 80 (90)
T d1x5sa1 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD-RETQRSRGFGFVTFENIDDAKDAMMAM--NGKSVDGRQIRVD 80 (90)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC-SSSCSCCSEEEEECSSHHHHHHHHHHH--TTCCTTSCCCEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHhhhccccccceeeccc-cccccccceEEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4568999999999999999999999999999999988 789999999999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
++.++.
T Consensus 81 ~a~~~~ 86 (90)
T d1x5sa1 81 QAGKSS 86 (90)
T ss_dssp EEECCC
T ss_pred EcCCCC
Confidence 987664
|
| >d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.78 E-value=2.5e-19 Score=142.30 Aligned_cols=85 Identities=29% Similarity=0.437 Sum_probs=77.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
...+|||||||+++++++|+++|++||.|.+|+++++...+|+++|||||+|.+.++|.+|++.| .||..++||+|+|+
T Consensus 7 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l-~~~~~~~Gr~l~V~ 85 (94)
T d2cpha1 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL-CHSTHLYGRRLVLE 85 (94)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH-HTCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHc-cCCcEECCEEEEEE
Confidence 34589999999999999999999999999999999986679999999999999999999999874 26889999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+|++..
T Consensus 86 ~A~~~~ 91 (94)
T d2cpha1 86 WADSEV 91 (94)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
|
| >d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor 3B subunit 4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2e-19 Score=139.87 Aligned_cols=79 Identities=25% Similarity=0.461 Sum_probs=74.2
Q ss_pred eeecCCCccCchHHHHHHhcccCcceEE-EEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccc
Q 003749 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNV-ILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (798)
Q Consensus 154 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~ 232 (798)
|||||||+++++++|+++|++||.|.++ ++++| +.+|+++|||||+|.+.++|.+|++.| ||..++||+|+|+++.
T Consensus 1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~~--~g~~~~gr~l~v~~a~ 77 (83)
T d1x5ta1 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD-PDTGNSKGYAFINFASFDASDAAIEAM--NGQYLCNRPITVSYAF 77 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC-TTTCSCCSEEEEEBSSHHHHHHHHHTT--TTCEETTEECEEEESC
T ss_pred CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEee-ccccccCceEEEEECCHHHHHHHHHhC--CCcEECCEEEEEEEec
Confidence 7999999999999999999999999765 78888 889999999999999999999999999 9999999999999998
Q ss_pred ccc
Q 003749 233 GRR 235 (798)
Q Consensus 233 ~~~ 235 (798)
++.
T Consensus 78 ~k~ 80 (83)
T d1x5ta1 78 KKD 80 (83)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
|
| >d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Cleavage stimulation factor, 64 kda subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2e-19 Score=146.56 Aligned_cols=82 Identities=29% Similarity=0.545 Sum_probs=77.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.+|+++++ +.||+++|||||+|.+.++|.+|++.| ||..|+|+.|+|++
T Consensus 8 ~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~-~~tg~~~g~afV~f~~~~~a~~ai~~l--~~~~~~g~~i~V~~ 84 (104)
T d1p1ta_ 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYD-RETGKPKGYGFCEYQDQETALSAMRNL--NGREFSGRALRVDN 84 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEE-TTTTEEEEEEEEECSCHHHHHHHHHHS--SSBSCSSSCBEEEE
T ss_pred CCEEEEECCCCcCCHHHHHHhhhccccccccccccc-cceeccCCceEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 358999999999999999999999999999999998 889999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+.+..
T Consensus 85 a~~~~ 89 (104)
T d1p1ta_ 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCCC
Confidence 87664
|
| >d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding region containing protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.1e-19 Score=143.80 Aligned_cols=79 Identities=32% Similarity=0.483 Sum_probs=74.3
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++++++|+++|++||.|.+|++++| +.||+++|||||+|.+.++|.+|++.+ |+ .|+||.|+|+++
T Consensus 11 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~tg~~kg~afV~f~~~~~A~~Ai~~~--~~-~l~Gr~l~V~~a 86 (103)
T d2cqda1 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD-RQTGKSRGYGFVTMADRAAAERACKDP--NP-IIDGRKANVNLA 86 (103)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC-SSSCCCCSEEEEEESSHHHHHHHHTCS--SC-EETTEECEEEES
T ss_pred cEEEEeCCCCcCcHHHHHHHHhhcccccceecccc-ccccccCCeEEEEECCHHHHHHHHHHC--CC-cCCCEEEEEEEc
Confidence 47999999999999999999999999999999999 889999999999999999999999987 76 699999999998
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
...
T Consensus 87 ~~~ 89 (103)
T d2cqda1 87 YLG 89 (103)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
|
| >d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=5.8e-19 Score=140.02 Aligned_cols=81 Identities=27% Similarity=0.489 Sum_probs=74.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.+|+++.+ + +.++|||||+|.+.++|.+|+..| ||..++|+.|+|++
T Consensus 11 ~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~-~--~~~kg~afV~f~~~~~a~~Ai~~l--~~~~~~g~~l~V~~ 85 (93)
T d2cq3a1 11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-E--RGSKGFGFVTFENSADADRAREKL--HGTVVEGRKIEVNN 85 (93)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC-T--TTTCCEEEEEESCHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcceeeecccccc-c--cCCcceeEEEECCHHHHHHHHHHc--CCCEECCEEEEEEe
Confidence 458999999999999999999999999999999987 3 346999999999999999999999 99999999999999
Q ss_pred ccccch
Q 003749 231 DDGRRL 236 (798)
Q Consensus 231 ~~~~~~ 236 (798)
|+++..
T Consensus 86 A~~r~~ 91 (93)
T d2cq3a1 86 ATARVM 91 (93)
T ss_dssp CCSSCC
T ss_pred cCcCCC
Confidence 988753
|
| >d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=3.5e-19 Score=139.17 Aligned_cols=78 Identities=28% Similarity=0.511 Sum_probs=72.1
Q ss_pred eeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCC---CCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFE---KNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 154 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
|||||||+++++++|+++|++||.|.+++++++ +.++ ++||||||+|.+.++|.+|++.+ ||..++||.|+|++
T Consensus 1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~~~~~~kG~afV~f~~~~~A~~A~~~~--~~~~~~g~~i~V~~ 77 (85)
T d2cpfa1 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKK-KNKAGVLLSMGFGFVEYKKPEQAQKALKQL--QGHTVDGHKLEVRI 77 (85)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEE-ECTTCCEEEEEEEEEEESSHHHHHHHHHHS--TTCEETTEECEEEC
T ss_pred CEEcCCCCCCCHHHHHHHHHHhCCccccceecc-cccccccccceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEE
Confidence 799999999999999999999999999999987 4444 56999999999999999999999 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
++..
T Consensus 78 a~~~ 81 (85)
T d2cpfa1 78 SERA 81 (85)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 8654
|
| >d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=9.6e-19 Score=137.89 Aligned_cols=81 Identities=23% Similarity=0.424 Sum_probs=74.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+.++|||||||.++++++|+++|++||.|.+|+++.| +.++ +|||||+|.+.++|.+|++.+ ||..++|+.|+|.
T Consensus 7 ~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d-~~~~--~~~afV~f~~~~~A~~A~~~l--~~~~~~g~~i~v~ 81 (90)
T d2cqia1 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSN--DPYCFVEFYEHRDAAAALAAM--NGRKILGKEVKVN 81 (90)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC-CCSS--CCEEEEEESSHHHHHHHHHHH--TTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecc-cCcc--ceeeEEEECCHHHHHHHHHHc--CCCEECCEEEEEE
Confidence 4569999999999999999999999999999999987 5444 799999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++++.
T Consensus 82 ~a~~~~ 87 (90)
T d2cqia1 82 WATTPS 87 (90)
T ss_dssp ECCCTT
T ss_pred EcCCCC
Confidence 997653
|
| >d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=8.4e-19 Score=134.88 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=71.9
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++|+++|+++|++||.|..+++..+ +.+|+++|||||+|.+.+++.+|++ + ||..|+||.|+|+.|
T Consensus 3 r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~-~~~~~~~g~afV~f~~~e~~~~al~-~--~~~~l~Gr~i~V~~A 78 (79)
T d1l3ka2 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVI-Q--KYHTVNGHNCEVRKA 78 (79)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHH-C--SCCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHHhccccccccccC-CCCcccccEEEEEEcCHHHHHHHHH-h--CCCEECCEEEEEEEC
Confidence 58999999999999999999999999999999998 8899999999999999999999985 6 999999999999865
|
| >d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Hypothetical protein FLJ20273 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6.3e-19 Score=141.05 Aligned_cols=85 Identities=21% Similarity=0.382 Sum_probs=76.7
Q ss_pred ccceeecCCCccCchHHHHHHhcccCc-ceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGP-IKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+|+|||||||.++++++|+++|++||+ |.++++++|...+|+++|||||+|.+.++|.+|++.|..++..++|+.|+|+
T Consensus 1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~ 80 (96)
T d2disa1 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 80 (96)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEE
Confidence 479999999999999999999999996 8999999986678999999999999999999999998334566789999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
||+++.
T Consensus 81 ~A~p~~ 86 (96)
T d2disa1 81 WAEPEI 86 (96)
T ss_dssp ESCSSC
T ss_pred EcCCCC
Confidence 998765
|
| >d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Neural RNA-binding protein Musashi-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=6.6e-19 Score=134.15 Aligned_cols=75 Identities=25% Similarity=0.478 Sum_probs=71.6
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
+|||||||+++|+++|+++|++||.|..+.+..+ +.+|+++|||||+|.+.++|.+|++ + ||+.|+||+|+|++|
T Consensus 1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~-~~~~~~~~~afV~F~~~~~a~~al~-~--~~~~l~gr~i~V~~A 75 (75)
T d2msta_ 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD-KTTNRHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBCC-TTCTTSCCEEEEECSCHHHHHHHHH-C--SSCCBTTBCCEEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeee-ccccccCceeEEEECCHHHHHHHHh-c--CCCEECCeEEEEEEC
Confidence 5999999999999999999999999999999998 8899999999999999999999996 7 999999999999875
|
| >d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=8.2e-19 Score=137.96 Aligned_cols=80 Identities=25% Similarity=0.472 Sum_probs=74.1
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.+++++.+ + +.++|||||+|++.++|.+|++.| ||..++|+.|+|++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-~--~~~kg~afV~f~~~~~A~~Ai~~l--~g~~~~g~~i~V~~ 82 (89)
T d1cvja2 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E--NGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGR 82 (89)
T ss_dssp TTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCB-T--TBCCSCEEEEESCHHHHHHHTTSS--SEEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEee-c--CCCcceeEEEECCHHHHHHHHHHc--CCCEECCEEEEEEE
Confidence 347999999999999999999999999999999987 3 447899999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 83 a~~~~ 87 (89)
T d1cvja2 83 FKSRK 87 (89)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 98764
|
| >d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 28 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=2e-18 Score=139.53 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=77.5
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcc----cCCeeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVE----FDGVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~----~~~~~~~g~~ 225 (798)
++++|||||||+++++++|+++|++||.|.++.+..+ +.+++++|||||+|.+.++|.+|++.+. .+|..++||.
T Consensus 7 ~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~ 85 (98)
T d1x4ha1 7 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH-PDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 85 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC-SSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccc-cccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEE
Confidence 4569999999999999999999999999999999998 8899999999999999999999999871 2378899999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|++++++.
T Consensus 86 l~v~~a~~k~ 95 (98)
T d1x4ha1 86 LKVDLAVTRD 95 (98)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999998764
|
| >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Non-POU domain-containing octamer-binding protein, NonO species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=1.4e-18 Score=135.10 Aligned_cols=78 Identities=28% Similarity=0.537 Sum_probs=73.0
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
.++.++|||||||.++++++|+++|++||.|.+|++.++ +|||||+|++.++|.+|++.| ||..|+|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~~-------k~~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~ 75 (86)
T d2cpja1 5 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVEL--DNMPLRGKQLR 75 (86)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHH--TTCCBTTBCCE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeecc-------cceEEEEECCHHHHHHHHHHh--CCCEECCEEEE
Confidence 345568999999999999999999999999999999887 899999999999999999999 99999999999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|++|.+.
T Consensus 76 V~~A~~~ 82 (86)
T d2cpja1 76 VRFACHS 82 (86)
T ss_dssp EEESSCC
T ss_pred EEECCCc
Confidence 9999765
|
| >d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolysin TIAR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.8e-18 Score=137.62 Aligned_cols=77 Identities=18% Similarity=0.424 Sum_probs=72.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++.++|||||||.++++++|+++|++||.|.+|++++| ||||||+|.+.++|.+|+..| ||..|+|+.|+|
T Consensus 16 ~~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~-------kg~afV~f~~~~~A~~Ai~~l--~~~~i~g~~l~v 86 (96)
T d1x4ga1 16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSV--NGTTIEGHVVKC 86 (96)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEec-------ceEEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 34568999999999999999999999999999999987 899999999999999999999 999999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.|++++
T Consensus 87 ~~ak~~ 92 (96)
T d1x4ga1 87 YWGKES 92 (96)
T ss_dssp ECCCCC
T ss_pred EEcCCC
Confidence 999765
|
| >d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4e-18 Score=135.85 Aligned_cols=81 Identities=27% Similarity=0.542 Sum_probs=73.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+++++|||||||+++++++|+++|++||.|..+++..+ +.++|||||+|++.++|..|++.| ||+.|+|++|+|
T Consensus 12 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~e~a~~Ai~~l--~g~~~~g~~l~V 85 (95)
T d1x4aa1 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR----RGGPPFAFVEFEDPRDAEDAVYGR--DGYDYDGYRLRV 85 (95)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS----SSSSCCEEEEESCHHHHHHHHHHH--TTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEeccc----ccccceEEEEECCHHHHHHHHHHh--CCCEECCEEEEE
Confidence 44568999999999999999999999999999988654 567999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++++++
T Consensus 86 ~~a~~~r 92 (95)
T d1x4aa1 86 EFPRSGR 92 (95)
T ss_dssp ECCCCCC
T ss_pred EeccCCC
Confidence 9998753
|
| >d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.73 E-value=4.3e-19 Score=139.58 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=73.3
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
..+|||||||+++++++|+++|++||.|.+++++. +.+|+++|||||+|.+.++|.+|++ + ||..++||.|+|++
T Consensus 13 ~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~--~~~g~~kg~afv~F~~~e~a~~Al~-~--~g~~~~g~~i~V~~ 87 (91)
T d1fjeb1 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVD--VRTGTNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLEK 87 (91)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCE--EEEETTTTEEEEEESSHHHHHHHHH-G--GGEEETTEEEEEEC
T ss_pred CcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeee--cCCCCccEEeEEeeCCHHHHHHHHh-c--CCcEECCEEEEEEe
Confidence 45899999999999999999999999999998864 4689999999999999999999995 8 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
++++
T Consensus 88 ak~k 91 (91)
T d1fjeb1 88 PKGR 91 (91)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9764
|
| >d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.8e-18 Score=138.43 Aligned_cols=81 Identities=11% Similarity=0.236 Sum_probs=75.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|..+++..+ .+|+++|||||+|.+.++|.+|++.| ||..|.||++.|..
T Consensus 18 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~--~~~~~~g~afV~f~~~~~A~~Ai~~l--ng~~i~gr~~~v~~ 93 (101)
T d1x5oa1 18 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD--SSGTSRGVGFARMESTEKCEAVIGHF--NGKFIKTPPGVSAP 93 (101)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSCEEEEEEEEESCHHHHHHHHHHH--BTCCCCCCTTSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecc--cccccccceeEEeCCHHHHHHHHHHh--CCCEECCcCCccCC
Confidence 458999999999999999999999999999999886 47899999999999999999999999 99999999999988
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++|..
T Consensus 94 ~~Pl~ 98 (101)
T d1x5oa1 94 TEPLL 98 (101)
T ss_dssp SSCBE
T ss_pred CCCcc
Confidence 87653
|
| >d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein EWS species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=4.2e-18 Score=138.38 Aligned_cols=83 Identities=27% Similarity=0.438 Sum_probs=75.9
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcce--------EEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIK--------NVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF 221 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 221 (798)
+..+|||||||+++++++|+++|++||.|. .+.+.++ +.+|+++|||||+|.+.++|.+|++.| ||+.|
T Consensus 7 ~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d-~~~~~~~g~afV~f~~~~~a~~Ai~~l--~g~~~ 83 (101)
T d2cpea1 7 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD-KETGKPKGDATVSYEDPPTAKAAVEWF--DGKDF 83 (101)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC-TTTCSBCSEEEEEBSSHHHHHHHHHHH--TTCEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeec-cccccccceeeEEecCHHHHHHHHHHh--CCCEE
Confidence 456999999999999999999999999984 5666777 778999999999999999999999999 99999
Q ss_pred cceeeeeecccccc
Q 003749 222 HGRVLTVKLDDGRR 235 (798)
Q Consensus 222 ~g~~~~v~~~~~~~ 235 (798)
+||+|+|++++++.
T Consensus 84 ~gr~i~V~~a~~~~ 97 (101)
T d2cpea1 84 QGSKLKVSLARKKP 97 (101)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCEEEEEEEcCCCC
Confidence 99999999998763
|
| >d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Pre-mRNA branch site protein p14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=4.7e-18 Score=141.34 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=72.5
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+++|||||||.++++++|+++|++||.|++|++..+ ++++|||||+|.+.++|..|++.| ||..|+|+.|+|.+
T Consensus 7 ~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~----~~~kG~afV~f~~~~~A~~Ai~~l--~g~~~~gr~l~V~~ 80 (114)
T d2f9da1 7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT----PETRGTAYVVYEDIFDAKNACDHL--SGFNVCNRYLVVLY 80 (114)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS----TTTTTEEEEEESSHHHHHHHHHHH--TTCEETTEECEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCeEeeccccc----CCcCCeEEEEECCHHHHHHHHHHh--CCCEECCEEEEEEE
Confidence 358999999999999999999999999999999765 677999999999999999999999 99999999999999
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
+.+.
T Consensus 81 a~~~ 84 (114)
T d2f9da1 81 YNAN 84 (114)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8654
|
| >d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: E3 ubiquitin protein ligase CNOT4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=6.2e-18 Score=132.39 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=69.7
Q ss_pred cccceeecCCCccCchHHH---HHHhcccCcceEEEEecCCCCCCCC---cceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 150 QEGKIFVGNLPNWIKKHLV---MEFFRQFGPIKNVILIKGYNNFEKN---VGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l---~~~f~~~g~v~~~~~~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
+..+|||||||+++++++| .++|++||.|.+|.+.+| +.++.+ +|||||+|++.++|.+|++.| ||..++|
T Consensus 7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~-~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~l--ng~~~~g 83 (89)
T d2cpia1 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNS-TSYAGSQGPSASAYVTYIRSEDALRAIQCV--NNVVVDG 83 (89)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECC-SSCCSSSCCCEEEEEEESSHHHHHHHHHHH--TTEEETT
T ss_pred ecCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeec-cCcCCCCCcceEEEEecccchhHHHHHHHh--CCCEECC
Confidence 4568999999999999999 678999999999999998 665554 489999999999999999999 9999999
Q ss_pred eeeeee
Q 003749 224 RVLTVK 229 (798)
Q Consensus 224 ~~~~v~ 229 (798)
|.|+|.
T Consensus 84 r~lkvS 89 (89)
T d2cpia1 84 RTLKAS 89 (89)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
| >d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 41, RBM41 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.5e-18 Score=141.26 Aligned_cols=82 Identities=15% Similarity=0.315 Sum_probs=77.8
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
+++|||||||.++++++|+++|++||.|..+.+..+ +.+|+++|||||+|.+.++|.+|++.| ||..|+|++|+|++
T Consensus 18 s~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~g~~~g~~fV~f~~~~~A~~Ai~~l--~g~~~~g~~l~V~~ 94 (102)
T d2cpxa1 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR-MMTGRMRGQAFITFPNKEIAWQALHLV--NGYKLYGKILVIEF 94 (102)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEE-EECSSSCSEEEEECSSHHHHHHHHHHS--TTCBCSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecc-cccccccccceEEeccHHHHHHHHHHh--CCCEECCEEEEEEe
Confidence 458999999999999999999999999999999887 778999999999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 95 ak~k~ 99 (102)
T d2cpxa1 95 GKNKK 99 (102)
T ss_dssp CCCCS
T ss_pred CCCcc
Confidence 98874
|
| >d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1e-17 Score=129.80 Aligned_cols=78 Identities=15% Similarity=0.302 Sum_probs=71.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||.++|+++|+++|++||.|.+|++.++ .+|+++|||||+|.+.++|.+|++ + +|..++|+.|.|.
T Consensus 5 ~~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~--~~~~~kG~afV~f~~~e~a~~al~-~--~~~~~~g~~l~v~ 79 (85)
T d1zh5a2 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT--LHKAFKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLLIL 79 (85)
T ss_dssp HTTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC--TTCCEEEEEEEEESCHHHHHHHHT-C--CCCEETTEECEEE
T ss_pred CcCEEEEECCCCCCCHHHHHHHHHHhcccccceeeee--ccCCcceEEEEEEcCHHHHHHHHH-H--CCCEECCEEEEEE
Confidence 3459999999999999999999999999999999876 479999999999999999999995 5 9999999999998
Q ss_pred ccc
Q 003749 230 LDD 232 (798)
Q Consensus 230 ~~~ 232 (798)
+.+
T Consensus 80 ~~~ 82 (85)
T d1zh5a2 80 FKD 82 (85)
T ss_dssp EGG
T ss_pred EcC
Confidence 864
|
| >d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.3e-18 Score=128.65 Aligned_cols=71 Identities=20% Similarity=0.402 Sum_probs=68.5
Q ss_pred eeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 154 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
|||||||+++|+++|+++|++||.|..+++.++ +.+|+++|||||+|.+.++|.+|++.| ||..++||.++
T Consensus 1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l--ng~~~~Gr~~k 71 (72)
T d1x4ea1 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD-KTTNKCKGYGFVDFDSPSAAQKAVTAL--KASGVQAQMAK 71 (72)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC-SSSCSCCSEEEEEESCHHHHHHHHHHH--HHHTCCEESCC
T ss_pred CEEeCCCCcCCHHHHHHHHhhhccccccccccc-cccccccceeEEEECCHHHHHHHHHHh--CCCEECCEECc
Confidence 799999999999999999999999999999998 889999999999999999999999999 99999999875
|
| >d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Eukaryotic translation initiation factor 4B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.4e-17 Score=135.72 Aligned_cols=81 Identities=26% Similarity=0.425 Sum_probs=73.5
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++|| +.+++++.++..+|+++|||||+|.+.++|++|+ .+ |+..|+||.|+|++
T Consensus 15 ~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~--~~~~~~gr~l~V~~ 90 (104)
T d1wi8a_ 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL--NEESLGNKRIRVDV 90 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GG--GTCEETTEECEEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHH-Hc--CCCEECCEEEEEEE
Confidence 35899999999999999999999999 7888888876778999999999999999998777 47 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
+.++.
T Consensus 91 a~~~~ 95 (104)
T d1wi8a_ 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97764
|
| >d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: IGF-II mRNA-binding protein 2 isoform A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.3e-18 Score=130.36 Aligned_cols=74 Identities=20% Similarity=0.386 Sum_probs=68.7
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCe-eecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGV-EFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~-~~~g~~~~v~~~ 231 (798)
+|||||||.++++++|+++|++||.|.++++.+. ||||||+|.+.++|.+|++.| ||. .++|++|+|+++
T Consensus 3 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~-------rg~aFV~f~~~~~A~~Ai~~l--ng~~~~~G~~i~V~~a 73 (80)
T d2cqha1 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK-------SGYAFVDYPDQNWAIRAIETL--SGKVELHGKIMEVDYS 73 (80)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE-------TTEEEECCSCHHHHHHHHHHH--TTTCEETTEECEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCcEEEeEEecc-------cceEEEEECCHHHHHHHHHHh--CCCeEECCEEEEEEEc
Confidence 7999999999999999999999999988777665 899999999999999999999 985 699999999999
Q ss_pred cccc
Q 003749 232 DGRR 235 (798)
Q Consensus 232 ~~~~ 235 (798)
.++.
T Consensus 74 ~~k~ 77 (80)
T d2cqha1 74 VSKK 77 (80)
T ss_dssp CCCC
T ss_pred CCcC
Confidence 8874
|
| >d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Negative elongation factor E, NELF-E species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.1e-17 Score=127.90 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=69.1
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
++++|||||++ +|+++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| ||..++|++|+|+
T Consensus 4 ~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~~~-------~~~afV~f~~~~~A~~Ai~~l--ng~~~~g~~l~V~ 72 (79)
T d2bz2a1 4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPP-------RNCAFVTYEKMESADQAVAEL--NGTQVESVQLKVN 72 (79)
T ss_dssp CCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEETT-------TTEEEEECSSHHHHHHHHHHH--TTCBCSSCBCEEE
T ss_pred CCCEEEEECCC--CCHHHHHHHHhccCccceeeeccC-------CCEEEEEEcccHHHHHHHHHh--CCCEECCEEEEEE
Confidence 45699999995 899999999999999999999876 899999999999999999999 9999999999999
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
+++++
T Consensus 73 ~a~~~ 77 (79)
T d2bz2a1 73 IARKQ 77 (79)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 99765
|
| >d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Drosophila melanogaster [TaxId: 7227]
Probab=99.70 E-value=1.4e-17 Score=128.89 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=69.4
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee-cceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-HGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~-~g~~~~ 227 (798)
+++++|||||||.++++++|+++|++||.|.+++++++ .+|||||+|.+.++|.+|+..| ||..+ +|++|+
T Consensus 6 pP~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~------~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~~~i~ 77 (83)
T d2b0ga1 6 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN------RHDIAFVEFTTELQSNAAKEAL--QGFKITPTHAMK 77 (83)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTT------TCSCEEEEESSHHHHHHHHHHH--TTCBSSTTCBCE
T ss_pred CCCCEEEEECCCCCCCHHHHHhhhccCccEEEeeeecc------cceeEEEecCCHHHHHHHHHHh--CCcEeCCCcEEE
Confidence 34569999999999999999999999999999999875 2789999999999999999999 99998 478999
Q ss_pred eeccc
Q 003749 228 VKLDD 232 (798)
Q Consensus 228 v~~~~ 232 (798)
|.|++
T Consensus 78 v~~ak 82 (83)
T d2b0ga1 78 ITFAK 82 (83)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99986
|
| >d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicesomal U1A protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.4e-18 Score=132.44 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=72.3
Q ss_pred cccceeecCCCccCchHHHH----HHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee
Q 003749 150 QEGKIFVGNLPNWIKKHLVM----EFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV 225 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~ 225 (798)
++++|||||||+++++++|+ ++|++||.|.+|++.+ +|+++|||||+|++.++|.+|++.+ ||..++|++
T Consensus 2 P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~----~~~~~g~afV~F~~~~~A~~A~~~~--~~~~~~g~~ 75 (91)
T d1nu4a_ 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR----SLKMRGQAFVIFKEVSSATNALRSM--QGFPFYDKP 75 (91)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH----HHHHTTCEEEEESSHHHHHHHHHHH--TTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEee----eccCCCceEEEECCHHHHHHHHHHh--CCCEECCEE
Confidence 56799999999999999886 4689999999998854 4778999999999999999999999 999999999
Q ss_pred eeeecccccc
Q 003749 226 LTVKLDDGRR 235 (798)
Q Consensus 226 ~~v~~~~~~~ 235 (798)
|+|.+++++.
T Consensus 76 l~v~~ak~~~ 85 (91)
T d1nu4a_ 76 MRIQYAKTDS 85 (91)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEeCCCc
Confidence 9999998763
|
| >d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleolin species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]
Probab=99.69 E-value=1.1e-17 Score=133.48 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=71.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
++.++|||||||+++++++|+++|++||.|..++ .+|+++|||||+|.+.++|.+|++.| ||..|+||+|+|
T Consensus 14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~------~~~~~~~~afV~f~~~~~A~~A~~~l--~~~~~~gr~i~V 85 (96)
T d1fjca_ 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVS------QDGKSKGIAYIEFKSEADAEKNLEEK--QGAEIDGRSVSL 85 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEE------ETTEEEEEEEEEESSHHHHHHHHHHT--TEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcccceeee------ecCccccEEEEEeCCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 4456999999999999999999999999987653 35788999999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++.++.
T Consensus 86 ~~a~~k~ 92 (96)
T d1fjca_ 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEeCCCC
Confidence 9998875
|
| >d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: APOBEC1 stimulating protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.1e-17 Score=128.10 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=70.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|..+++.+. +|||||+|.+.++|.+|+..| ||..|+|+.|+|++
T Consensus 8 ~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~~~-------rg~afV~f~~~~~A~~Ai~~l--~~~~i~g~~i~V~~ 78 (86)
T d2cpda1 8 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKAL--NGKVLDGSPIEVTL 78 (86)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHH--SSEEETTEEEEEEC
T ss_pred CCEEEEcCCCCCCCHHHHHHhhcccceeeeEEEccc-------cEEEEEEeCCHHHHHHHHHHc--CCCEECCEEEEEEe
Confidence 458999999999999999999999999998877544 899999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++|+.
T Consensus 79 akP~~ 83 (86)
T d2cpda1 79 AKPVD 83 (86)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98774
|
| >d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.5e-17 Score=128.44 Aligned_cols=79 Identities=10% Similarity=0.190 Sum_probs=70.7
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee-cceeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-HGRVLT 227 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~-~g~~~~ 227 (798)
+++++|||||||+++++++|+++|++||.|.++++.. ++++|||||+|++.++|.+|+..| ||..+ +|+.|+
T Consensus 8 pPs~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~-----~~~~~~afV~f~~~~~A~~A~~~l--~~~~i~~g~~l~ 80 (88)
T d2adca2 8 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-----QKDRKMALIQMGSVEEAVQALIDL--HNHDLGENHHLR 80 (88)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-----SSSTTCEEEEESSHHHHHHHHHHH--TTCBSSSSCBCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEee-----ecccceeEEEECCHHHHHHHHHhc--cCCEecCCCEEE
Confidence 3456999999999999999999999999998887664 345899999999999999999999 99988 599999
Q ss_pred eeccccc
Q 003749 228 VKLDDGR 234 (798)
Q Consensus 228 v~~~~~~ 234 (798)
|.+++++
T Consensus 81 v~~sk~~ 87 (88)
T d2adca2 81 VSFSKST 87 (88)
T ss_dssp EEECSSC
T ss_pred EEeCCCC
Confidence 9999875
|
| >d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoproteins C1/C2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.6e-17 Score=131.14 Aligned_cols=75 Identities=29% Similarity=0.507 Sum_probs=68.0
Q ss_pred cccceeecCCC-ccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLP-NWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
..++||||||+ ..+++++|+++|++||.|.++++. ||||||+|++.++|.+|++.| ||+.|+|++|+|
T Consensus 14 ~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i~---------rg~aFV~f~~~~~A~~Ai~~l--ng~~~~g~~l~V 82 (98)
T d1wf2a_ 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH---------KGFAFVQYVNERNARAAVAGE--DGRMIAGQVLDI 82 (98)
T ss_dssp CCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEEE---------TEEEEEEESSHHHHHHHHHTT--TTCEETTEECEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEEe---------CCeEEEEECCHHHHHHHHHHc--CCCEECCEEEEE
Confidence 34589999997 578888999999999999999883 789999999999999999999 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
+++++..
T Consensus 83 ~~a~~~~ 89 (98)
T d1wf2a_ 83 NLAAEPK 89 (98)
T ss_dssp EETTSCC
T ss_pred EECCCCC
Confidence 9997654
|
| >d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein 2, PTBP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.9e-17 Score=127.47 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=74.1
Q ss_pred cccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 148 FRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 148 ~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
..++++|||||||.++++++|+++|++||.|.++++.++ +|||||+|++.++|.+|++.+..++..++||+|+
T Consensus 5 ~~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~-------~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~ 77 (88)
T d2cq1a1 5 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 77 (88)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccccccccccccc-------ceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEE
Confidence 345679999999999999999999999999999999876 7999999999999999999775578899999999
Q ss_pred eecccccch
Q 003749 228 VKLDDGRRL 236 (798)
Q Consensus 228 v~~~~~~~~ 236 (798)
|.+++.+.+
T Consensus 78 v~~sk~~~l 86 (88)
T d2cq1a1 78 IQYSNHKEL 86 (88)
T ss_dssp EEECSCSSC
T ss_pred EEECCCCCC
Confidence 999987643
|
| >d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein 19, Rbm19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=2.9e-17 Score=136.08 Aligned_cols=80 Identities=23% Similarity=0.251 Sum_probs=72.5
Q ss_pred hcccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceee
Q 003749 147 EFRQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVL 226 (798)
Q Consensus 147 ~~~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~ 226 (798)
..+..++|||+|||+++++++|+++|++||.|.+|.|... +|||||+|.+.++|.+|++.| ||..|+|++|
T Consensus 6 ~~r~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~~-------kg~afV~f~~~~~A~~A~~~l--ng~~~~gr~l 76 (111)
T d1whxa_ 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-------GITAIVEFLEPLEARKAFRHL--AYSKFHHVPL 76 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-------SSCEEEEESCHHHHHHHHHHH--TTCBSSSSBC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHhhhhccCCccEEEeecc-------CceEEEEEcCHHHHHHHHHHH--cCCccCCCeE
Confidence 3455679999999999999999999999999999988544 899999999999999999999 9999999999
Q ss_pred eeecccccc
Q 003749 227 TVKLDDGRR 235 (798)
Q Consensus 227 ~v~~~~~~~ 235 (798)
.|+++....
T Consensus 77 ~v~~a~~~~ 85 (111)
T d1whxa_ 77 YLEWAPIGV 85 (111)
T ss_dssp EEEEEETTT
T ss_pred EEEECCCCc
Confidence 999986553
|
| >d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 1, SFRS1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.7e-17 Score=129.53 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=68.4
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~ 232 (798)
+|||||||+++++++|+++|++||.|.++++.+| |||||+|.+.++|.+|++.| ||..|+|+.|+|.+++
T Consensus 2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l--~g~~~~g~~i~v~~~~ 71 (87)
T d3begb1 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKL--DNTKFRSHEGETAYIR 71 (87)
T ss_dssp CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHH--TTCBCCCTTSCCCBCE
T ss_pred eEEEECCCCcCCHHHHHHHHhhhccccccccccc--------ceeeEEeCCHHHHHHHHHHh--CCCEECCcEeEEeEEe
Confidence 7999999999999999999999999999998753 89999999999999999999 9999999999998876
Q ss_pred ccc
Q 003749 233 GRR 235 (798)
Q Consensus 233 ~~~ 235 (798)
.+.
T Consensus 72 ~~~ 74 (87)
T d3begb1 72 VKV 74 (87)
T ss_dssp EEE
T ss_pred cCc
Confidence 554
|
| >d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: U4/U6 snRNA-associated-splicing factor PRP24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=7.3e-17 Score=121.36 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=66.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||||||+++++++|+++|++||.|+++++..+ +. ..+|||||+|++.++|.+|+. + |+..|+|++|.|+.+
T Consensus 1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~-~~--~~~~~afV~F~~~~~a~~Al~-~--~~~~i~g~~i~V~~~ 74 (75)
T d2ghpa2 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS-LK--KNFRFARIEFARYDGALAAIT-K--THKVVGQNEIIVSHL 74 (75)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEEC-TT--SSSEEEEEEESSHHHHHHHHT-T--TTCEETTEECEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHhcCCceEEEEEEee-cc--ccceEEEEEEcchHHhHHHHH-h--cCcEECCEEEEEEEC
Confidence 37999999999999999999999999999999987 33 346899999999999999984 6 999999999999754
|
| >d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Probable RNA-binding protein KIAA1579 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.6e-17 Score=126.14 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=66.7
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
..+|||+|||+++++++|+++|++|| ++.+.+. +++|||||+|.+.++|.+|++.| |+..++||+|+|++
T Consensus 5 s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~~-------~~kg~afV~f~~~~~A~~Ai~~l--n~~~~~G~~l~V~~ 74 (88)
T d1wg1a_ 5 SSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMF--HQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSSC-CCCEEEE-------GGGTEEEECCSCHHHHHHHHHHH--TTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCccChHHHHHHHHhcC-ceeeeee-------ccCCceEEEECCHHHHHHHHHHh--CCCEECCEEEEEEE
Confidence 35899999999999999999999999 4444443 34899999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++.+.
T Consensus 75 a~~~~ 79 (88)
T d1wg1a_ 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97764
|
| >d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Ribonucleoprotein PTB-binding 1, Raver-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=9.4e-17 Score=120.75 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=64.5
Q ss_pred eeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccc
Q 003749 154 IFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDG 233 (798)
Q Consensus 154 ~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~ 233 (798)
|||||||+++++++|+++|++|| +..+++. +++|||||+|.+.++|.+|++.| ||..++|++|+|++++.
T Consensus 1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~~-------~~~g~afv~f~~~~~A~~Ai~~l--n~~~~~g~~l~V~~a~~ 70 (75)
T d1wi6a1 1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD-------KYKGTAFVTLLNGEQAEAAINTF--HQSRLRERELSVQLQPT 70 (75)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSC-EEEEEEE-------TTTTEEEEEESSHHHHHHHHHHH--TTEESSSCEEEEEECCS
T ss_pred CEEeCCCCcCCHHHHHHHHhccc-ccceeec-------ccceeEEEEECCHHHHHHHHHHh--CCccCCCCEEEEEEeCC
Confidence 79999999999999999999999 5555553 44999999999999999999999 99999999999999976
Q ss_pred c
Q 003749 234 R 234 (798)
Q Consensus 234 ~ 234 (798)
.
T Consensus 71 d 71 (75)
T d1wi6a1 71 D 71 (75)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=3.3e-17 Score=128.09 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=69.5
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
++|||+|||+++++++|+++|+.||.+....++.+ ..+|+++|||||+|.+.++|.+|++.| |+..++||+|+|+++
T Consensus 10 ~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~-~~~g~~~G~afV~f~~~e~a~~Ai~~l--~~~~l~gr~i~v~l~ 86 (86)
T d2cqpa1 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDL--NDRPIGSRKVKLVLG 86 (86)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHT--TTCEETTEECEEEES
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEe-CCCCCcceEEEEEEcCcHHHHHHHHHc--CCCEECCEEEEEEEC
Confidence 47999999999999999999999999986433443 468999999999999999999999999 999999999999874
|
| >d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Putative RNA-binding protein 15B, Rbm15b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=1.3e-16 Score=127.39 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=70.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecc--eeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHG--RVLT 227 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g--~~~~ 227 (798)
+.++|||+|||+++++++|+++|++||.|..+++.++ +|||||+|.+.++|.+|++.| |+..|+| ++|+
T Consensus 16 Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~-------~~~afV~f~~~~~A~~A~~~l--~~~~i~g~~~~l~ 86 (97)
T d1whya_ 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKM--RGFPLGGPDRRLR 86 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHH--TTCBCSSSSCBCE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhcccceEeeecc-------ccEEEeccCCHHHHHHHHHHh--CCCEeCCCceEEE
Confidence 4569999999999999999999999999999999876 899999999999999999999 9999986 5799
Q ss_pred eecccccc
Q 003749 228 VKLDDGRR 235 (798)
Q Consensus 228 v~~~~~~~ 235 (798)
|+|+++..
T Consensus 87 v~~ak~~~ 94 (97)
T d1whya_ 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998653
|
| >d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.8e-17 Score=133.21 Aligned_cols=77 Identities=17% Similarity=0.348 Sum_probs=70.6
Q ss_pred ccceeecCCCc-cCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 151 EGKIFVGNLPN-WIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+++|||+||++ .+++++|+++|++||.|++|+|+++ + +|||||+|++.++|.+|++.| ||..|+|+.|+|+
T Consensus 2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~-~-----kg~afV~f~~~~~A~~ai~~l--ng~~l~g~~l~v~ 73 (109)
T d2adca1 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-K-----KENALVQMADGNQAQLAMSHL--NGHKLHGKPIRIT 73 (109)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT-T-----SCCEEEEESCHHHHHHHHHHH--TTCBCSSSBCEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEec-c-----cceEEEEECCHHHHHHHHHHh--CCCEECCEEEEEE
Confidence 35899999965 5999999999999999999999987 2 799999999999999999999 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+++...
T Consensus 74 ~s~~~~ 79 (109)
T d2adca1 74 LSKHQN 79 (109)
T ss_dssp CCSCCC
T ss_pred ECCCCC
Confidence 987654
|
| >d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: TAR DNA-binding protein 43, TDP-43 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.5e-17 Score=127.39 Aligned_cols=75 Identities=20% Similarity=0.385 Sum_probs=67.9
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++++++|+++|++||.|.+|++.. +++|||||+|++.++|.+|+. +++.|+|++|+|++
T Consensus 5 s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~------~~~gfafV~f~~~~~a~~a~~----~~~~i~g~~l~v~~ 74 (88)
T d1wf0a_ 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK------PFRAFAFVTFADDQIAQSLCG----EDLIIKGISVHISN 74 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS------SCCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEee------ccCceEEEEECCHHHHHHHHh----CCCEECCEEeEEEe
Confidence 45999999999999999999999999999997754 358999999999999999874 78999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
++++.
T Consensus 75 a~~k~ 79 (88)
T d1wf0a_ 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98775
|
| >d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.5e-16 Score=128.97 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=73.8
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
....|||+|||+++|+++|+++|+.||.|..+.++.+ +.+|+++|||||+|.++++|.+|++ + |+..|+||.|+|.
T Consensus 14 ~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~-~~~~~~kG~afV~F~~~e~a~~a~~-~--~~~~i~gR~i~V~ 89 (104)
T d1wg5a_ 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPV-DFQGRSTGEAFVQFASQEIAEKALK-K--HKERIGHRYIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCB-CSSSCBCSEEEEEESSHHHHHHHHT-T--TTCCSSSSCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEe-CCCCCcceEEEEEeCCHHHHHHHHh-h--CCCEEcceEEEEE
Confidence 3447999999999999999999999999998777776 6789999999999999999999995 6 9999999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
.+.++.
T Consensus 90 ~~~~~~ 95 (104)
T d1wg5a_ 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 887664
|
| >d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=1.3e-16 Score=127.50 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=70.3
Q ss_pred cccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+++|||+|||.+ +|+++|.++|++||.|.++++.++ +|||||+|++.++|.+|++.+..++..++||+|+|
T Consensus 17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~~-------k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V 89 (99)
T d1x4fa1 17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 89 (99)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEeec-------CCcEEEEecchHHHHHHHHHHhcCCceECCEEEEE
Confidence 3458999999985 899999999999999999999877 89999999999999999986545899999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.+++.+
T Consensus 90 ~~s~~~ 95 (99)
T d1x4fa1 90 DLSEKY 95 (99)
T ss_dssp EEECSC
T ss_pred EEcCCc
Confidence 998654
|
| >d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor, arginine/serine-rich 9 (SFRS9) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=1.6e-16 Score=126.53 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=69.7
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
..+|||+|||+++++++|+++|++||.|+++++.+ +|||||+|.+.++|.+|++.| ||..|+|+.|+|.+
T Consensus 15 ~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~--------~g~afV~f~~~~~a~~Ai~~l--ng~~~~g~~i~v~~ 84 (98)
T d1wg4a_ 15 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQK--------DGMGMVEYLRKEDMEYALRKL--DDTKFRSHEGETSY 84 (98)
T ss_dssp SCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEET--------TTEEEEEESSHHHHHHHHHHH--SSEEEECTTSCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhhcccccccccc--------cceEEEEECCHHHHHHHHHHh--CCCEeCCeEEEEEE
Confidence 34899999999999999999999999999999875 589999999999999999999 99999999999999
Q ss_pred ccccc
Q 003749 231 DDGRR 235 (798)
Q Consensus 231 ~~~~~ 235 (798)
.+.+.
T Consensus 85 ~~~~~ 89 (98)
T d1wg4a_ 85 IRVYP 89 (98)
T ss_dssp EEEEC
T ss_pred EecCC
Confidence 87654
|
| >d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein L-like species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=3.4e-16 Score=126.77 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=72.9
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.++.+|||+|||.++++++|+++|++||.|.++++.++ ||||||+|++.++|.+|++.+..++..++|++|+|
T Consensus 13 ~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~~-------k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v 85 (104)
T d1wexa_ 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEEec-------ceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEE
Confidence 34569999999999999999999999999999999876 89999999999999999998755677899999999
Q ss_pred ecccccch
Q 003749 229 KLDDGRRL 236 (798)
Q Consensus 229 ~~~~~~~~ 236 (798)
.+++....
T Consensus 86 ~~s~~~~~ 93 (104)
T d1wexa_ 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEcCCCcc
Confidence 99977643
|
| >d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Heterogeneous nuclear ribonucleoprotein H' species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.1e-16 Score=127.48 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=71.8
Q ss_pred ccccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 149 RQEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 149 ~~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
+...+|||+|||+++|+++|+++|+.|| +..++++.+ .+|+++|||||+|.+.++|.+|++ + |+..|+||.|+|
T Consensus 13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~-~~~v~~~~~--~~g~~~G~afVeF~~~~~a~~Al~-~--~~~~i~gR~I~V 86 (102)
T d1weza_ 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIG--PDGRVTGEADVEFATHEDAVAAMA-K--DKANMQHRYVEL 86 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEES--SSSCEEEEEEEECSSSHHHHHHHT-T--SSCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHhccC-cceeeeEEe--cCCcceEEEEEEECCHHHHHHHHH-c--CCCEECCEEEEE
Confidence 3445899999999999999999999998 457888776 468999999999999999999985 7 999999999999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++..+.
T Consensus 87 ~~s~~~~ 93 (102)
T d1weza_ 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 9987664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.1e-13 Score=138.24 Aligned_cols=272 Identities=11% Similarity=0.025 Sum_probs=194.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 003749 476 CLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMG 555 (798)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 555 (798)
.....+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|...|++..+..+. +...|..++..|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 45667888999999999999998864 346778888888999999999999999988887554 6778888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003749 556 NMDRAIHIVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILD 635 (798)
Q Consensus 556 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 635 (798)
++++|.+.++++...... ...+........... +.......+..+...+.+.+|...|.
T Consensus 102 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPA--YAHLVTPAEEGAGGA-------------------GLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTSTT--TGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccc--hHHHHHhhhhhhhhc-------------------ccccchhhHHHHHHhhHHHHHHHHHH
Confidence 999999998888775422 111100000000000 00111111223344456677888887
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 003749 636 EMTLAG-ISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPR 714 (798)
Q Consensus 636 ~m~~~~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (798)
+.++.. ...+...+..+...+...|++++|+..|++++..... +..+|..+..+|.+.|++++|...++++.+.+ +.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 776543 2345677888888889999999999999998877544 67888889999999999999999999988765 56
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHcCCcccccc
Q 003749 715 NTFVYNILIDGWARRGDVWEAADLMQQMKQE----------GVQPDVHTYTSFINACSKAGDMQVRFS 772 (798)
Q Consensus 715 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----------g~~pd~~~~~~l~~~~~~~g~~~~a~~ 772 (798)
+...|..|+.+|.+.|++++|++.|++.++. ........|..+-.++...|+.+....
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7788899999999999999999999988762 112234467777778888887765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.4e-13 Score=137.79 Aligned_cols=229 Identities=11% Similarity=0.022 Sum_probs=151.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMG 380 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 380 (798)
.....+.+.|++++|+..|+++++.. +.+..+|..+..+|...|++++|+..|++.++.. +-+...|..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45677889999999999999999984 4467899999999999999999999999999874 337888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhh---------------HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHH
Q 003749 381 NAEAADHWFEEAKERHATLNAII---------------YGNIIYAQCQTRNMERAEALVRDMEEEGI-DAPIDIYHMMMD 444 (798)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~ 444 (798)
++++|++.++++....... ... ....+..+...+.+.+|.+.|.+.++... ..+..++..+..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 9999999999988753321 110 11111222334455556666655554321 123445555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003749 445 GYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWAN 524 (798)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 524 (798)
.+...|++++|+..|++....... +..+|..+..+|...|++++|++.|+++++.. +-+..+|..+..+|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHH
Confidence 666666666666666665554222 45555566666666666666666666655542 2244455556666666666666
Q ss_pred HHHHHHHHHH
Q 003749 525 VFAVFEDVMR 534 (798)
Q Consensus 525 a~~~~~~~~~ 534 (798)
|+..|++.++
T Consensus 259 A~~~~~~al~ 268 (323)
T d1fcha_ 259 AVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
|
| >d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.6e-16 Score=127.65 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=70.7
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||+|||+++|+++|+++|+.||.|..+.++.+ ..+|+++|||||+|.+.++|.+|++ + ||..|+||.|.|..+
T Consensus 9 ~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~-~~~g~~~G~afV~F~s~~~a~~Al~-~--n~~~i~gr~i~V~~~ 84 (103)
T d2cpya1 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLV-DNNGQGLGQALVQFKNEDDARKSER-L--HRKKLNGREAFVHVV 84 (103)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECC-CTTSSCSSCEEEECSSHHHHHHHGG-G--CSEEETTEEEEEEEE
T ss_pred eEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEe-CCCCCcCccEEEEECCHHHHHHHHh-c--CCCeECCcEEEEEEC
Confidence 47999999999999999999999999987555555 5789999999999999999999995 7 999999999999887
Q ss_pred ccc
Q 003749 232 DGR 234 (798)
Q Consensus 232 ~~~ 234 (798)
...
T Consensus 85 ~~~ 87 (103)
T d2cpya1 85 TLE 87 (103)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
|
| >d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Polypyrimidine tract-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.5e-16 Score=127.80 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=70.3
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee--cceeeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF--HGRVLTV 228 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~--~g~~~~v 228 (798)
..+||||||++++|+++|+++|++||.|.++++..+ +++|||||+|++.++|.+|+..| ||..| +|+.|+|
T Consensus 7 ~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~-----~~~g~aFV~f~~~e~A~~Ai~~l--n~~~l~~~~~~l~v 79 (108)
T d2adba1 7 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSL--DGQNIYNACCTLRI 79 (108)
T ss_dssp EEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHH--HSCCSSTTCCCCEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEee-----CCCCeEEEEECCHHHHHHHHHHH--CCCEeccCCcEEEE
Confidence 348999999999999999999999999999999876 24899999999999999999999 99998 5788999
Q ss_pred ecccccc
Q 003749 229 KLDDGRR 235 (798)
Q Consensus 229 ~~~~~~~ 235 (798)
.++++..
T Consensus 80 ~~s~~~~ 86 (108)
T d2adba1 80 DFSKLTS 86 (108)
T ss_dssp EECSSCS
T ss_pred EecCCcc
Confidence 8887654
|
| >d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: RNA-binding protein 12 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.8e-16 Score=128.28 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=72.7
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
+..+|||+|||+++|+++|+++|+.||.+..+.++.+ ..+|+++|||||+|.+.++|.+|+. + ||..|+||.|.|.
T Consensus 17 ~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~-~~~g~~~G~afVeF~~~e~a~~al~-~--~~~~i~gR~i~V~ 92 (112)
T d1wela1 17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQVH 92 (112)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEEE
T ss_pred CCeEEEEecCCCcCcHHHHhhHHhhccccccceeeec-CcccceeeEEEEEECCHHHHHHHHH-c--CCCcCCCEEEEEE
Confidence 3458999999999999999999999999987666655 6789999999999999999999995 7 9999999999998
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
.+..+.
T Consensus 93 ~~~~~~ 98 (112)
T d1wela1 93 PITKKG 98 (112)
T ss_dssp EECHHH
T ss_pred EcChHH
Confidence 875554
|
| >d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Matrin 3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=7.8e-16 Score=119.97 Aligned_cols=78 Identities=12% Similarity=0.205 Sum_probs=70.6
Q ss_pred cccceeecCCCcc-CchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeee
Q 003749 150 QEGKIFVGNLPNW-IKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTV 228 (798)
Q Consensus 150 ~~~~~~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v 228 (798)
.+++|||||||.. +|+++|.++|++||.|.++++..+ +++|||+|++.++|..|++.+..++..++||+|+|
T Consensus 7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~~-------k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V 79 (89)
T d1x4da1 7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 79 (89)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeecc-------ceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEE
Confidence 3458999999986 899999999999999999999887 78999999999999999997755788999999999
Q ss_pred eccccc
Q 003749 229 KLDDGR 234 (798)
Q Consensus 229 ~~~~~~ 234 (798)
.+++..
T Consensus 80 ~~s~~~ 85 (89)
T d1x4da1 80 HLSQKY 85 (89)
T ss_dssp EEECCC
T ss_pred EECCCc
Confidence 998654
|
| >d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Calcipressin-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=1e-15 Score=122.89 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=70.0
Q ss_pred cccceeecCCCccCch-----HHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecce
Q 003749 150 QEGKIFVGNLPNWIKK-----HLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGR 224 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~ 224 (798)
...+|||+||+.++.. ++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| ||..|+|+
T Consensus 4 ~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k~-------~~~afV~f~~~~~A~~Ai~~l--ng~~~~g~ 74 (104)
T d1weya_ 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRL--HKTEFLGK 74 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTS--TTSEETTE
T ss_pred CCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEecC-------CCEEEEEECCHHHHHHHHHHh--cccccCCC
Confidence 3458999999998743 458999999999999999876 899999999999999999999 99999999
Q ss_pred eeeeecccccch
Q 003749 225 VLTVKLDDGRRL 236 (798)
Q Consensus 225 ~~~v~~~~~~~~ 236 (798)
+|+|.|+++...
T Consensus 75 ~l~v~~a~~~~~ 86 (104)
T d1weya_ 75 EMKLYFAQTLHI 86 (104)
T ss_dssp ECEEECCCCSSC
T ss_pred EeEEeecccCCC
Confidence 999999987753
|
| >d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.5e-17 Score=127.50 Aligned_cols=77 Identities=23% Similarity=0.488 Sum_probs=67.8
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCC----CCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeee
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGY----NNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLT 227 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~ 227 (798)
++|||||||+++|+++|+++|++||.|..+.+.... ..+++++|||||+|.+.++|.+|+. | ||..++||.|+
T Consensus 2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~-l--~g~~~~Gr~l~ 78 (90)
T d1u2fa_ 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-F--DGIIFQGQSLK 78 (90)
T ss_dssp CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGG-G--SSCCSSSSCCC
T ss_pred CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHh-h--CCcEECCEEEE
Confidence 489999999999999999999999999877664321 4678899999999999999999984 8 99999999999
Q ss_pred eecc
Q 003749 228 VKLD 231 (798)
Q Consensus 228 v~~~ 231 (798)
|+..
T Consensus 79 V~r~ 82 (90)
T d1u2fa_ 79 IRRP 82 (90)
T ss_dssp CBCT
T ss_pred ECCC
Confidence 9754
|
| >d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Splicing factor U2AF subunits domain: U2AF35 (35 KDa subunit) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=8.9e-16 Score=123.20 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=71.6
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
..++|+++..+++|++|+++|++||+|.+|+|.++ .+|+++|||||+|.+.++|.+|++.| ||..++||+|+|+++
T Consensus 28 ~~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~--~~~~~~G~~fV~f~~~~~A~~Ai~~l--ng~~~~gr~i~v~~s 103 (104)
T d1jmta_ 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN--LGDHLVGNVYVKFRREEDAEKAVIDL--NNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS--SSSSSEEEEEEEESCHHHHHHHHHHH--TTCEETTEECCEEEC
T ss_pred chHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecC--CCCCEeeEEEEEEechhHHHHHHHHH--CCCEECCEEEEEEEC
Confidence 36899999999999999999999999999999865 58999999999999999999999999 999999999999875
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.9e-14 Score=130.43 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=76.3
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeee
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVK 229 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~ 229 (798)
..++|||||||+.+++++|+++|+.||.|..+.++.| +.+|+++|||||+|.+.++|.+|++ + ++..++|++|+|.
T Consensus 96 ~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~-~~~~~~~g~~fV~f~~~e~A~~Al~-~--~~~~~~G~~i~V~ 171 (183)
T d1u1qa_ 96 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKRGFAFVTFDDHDSVDKIVI-Q--KYHTVNGHNCEVR 171 (183)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHT-S--SCEEETTEEEEEE
T ss_pred ccceeEEccCCCcCCHHHHhhhhccCCceeeeeeecc-cccCccceeEEEEECCHHHHHHHHH-h--CCCeECCEEEEEE
Confidence 4458999999999999999999999999999999998 8899999999999999999999996 5 8899999999999
Q ss_pred cccccc
Q 003749 230 LDDGRR 235 (798)
Q Consensus 230 ~~~~~~ 235 (798)
+|.++.
T Consensus 172 ~A~~k~ 177 (183)
T d1u1qa_ 172 KALSKQ 177 (183)
T ss_dssp ECCCHH
T ss_pred ecCCcc
Confidence 997764
|
| >d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Alkylation repair AlkB homolog 8, ALKBH8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=7.5e-14 Score=111.26 Aligned_cols=71 Identities=15% Similarity=0.313 Sum_probs=60.9
Q ss_pred cccceee--cCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeee-cceee
Q 003749 150 QEGKIFV--GNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEF-HGRVL 226 (798)
Q Consensus 150 ~~~~~~v--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~-~g~~~ 226 (798)
++.++|| |||+.++|+++|+++|++||.|+++++..+ +|||||+|.+.++|.+|++.| ||..+ ++..+
T Consensus 17 pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~~-------k~~aFV~f~~~e~A~~A~~~l--ng~~i~~~~~~ 87 (101)
T d2cq2a1 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTL--NGKEVVDDLGQ 87 (101)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHHHHHT--TTCEEECTTSC
T ss_pred CCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeeccC-------ccEEEEEECCHHHHHHHHHHh--CCCCCCCCCCc
Confidence 3457888 559999999999999999999999999877 899999999999999999999 99887 34444
Q ss_pred eee
Q 003749 227 TVK 229 (798)
Q Consensus 227 ~v~ 229 (798)
++.
T Consensus 88 ~i~ 90 (101)
T d2cq2a1 88 KIT 90 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Lupus LA protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.1e-13 Score=113.19 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=64.7
Q ss_pred ceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCCh-hHHHHHHHhcccCCeeecceeeeeecc
Q 003749 153 KIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGP-AAEKSAMKAVEFDGVEFHGRVLTVKLD 231 (798)
Q Consensus 153 ~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~-~~a~~a~~~~~~~~~~~~g~~~~v~~~ 231 (798)
.+|||||++.+|+++|+++|++||+|.+|+|+++ +|||||.|.+. ++|..|+..+ |+..+.++.+.|.++
T Consensus 13 ~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~~-------kg~gfV~F~~~~~~A~~a~~~~--~~~~l~~~~~~v~~~ 83 (113)
T d1owxa_ 13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-------AKEGIILFKEKAKEALGKAKDA--NNGNLQLRNKEVTWE 83 (113)
T ss_dssp EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-------CSEEEEEESSCHHHHHHHHHHT--TTSCBCTTSSSEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCChheEEEecC-------CceEEEEecCcHHHHHHHHHHh--cCCceecCceEEEEe
Confidence 5699999999999999999999999999999987 89999999996 6788999999 999888888877776
Q ss_pred cc
Q 003749 232 DG 233 (798)
Q Consensus 232 ~~ 233 (798)
..
T Consensus 84 ~~ 85 (113)
T d1owxa_ 84 VL 85 (113)
T ss_dssp EC
T ss_pred ec
Confidence 43
|
| >d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nucleoporin 35 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=3.3e-13 Score=101.78 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=62.4
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeeccee-eeee
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRV-LTVK 229 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~-~~v~ 229 (798)
.+.|||+++|++++++.| ++|++||+|.++++.++ +|||||+|.++++|.+|++ + ||..|+|+. +.|.
T Consensus 4 ~~wV~V~G~p~~~~~~il-~~F~~~G~I~~~~~~~~-------~~~~fV~f~~~~~A~~Al~-~--nG~~~~g~~~vgV~ 72 (81)
T d1wwha1 4 DTWVTVFGFPQASASYIL-LQFAQYGNILKHVMSNT-------GNWMHIRYQSKLQARKALS-K--DGRIFGESIMIGVK 72 (81)
T ss_dssp GGEEEEECCCGGGHHHHH-HHHHTTSCEEEEEECSS-------SSEEEEEESSHHHHHHHHT-T--TTCEETTTEECEEE
T ss_pred ccEEEEECCChHHHHHHH-HHHHhhhhhheEEecCC-------CCEEEEEEcccHHHHHHHh-c--CCCeECCcEEEEEE
Confidence 457999999999997666 57999999999988655 8999999999999999995 7 999999985 5677
Q ss_pred ccccc
Q 003749 230 LDDGR 234 (798)
Q Consensus 230 ~~~~~ 234 (798)
.+..+
T Consensus 73 ~~~~k 77 (81)
T d1wwha1 73 PCIDK 77 (81)
T ss_dssp ECCCH
T ss_pred eCCCh
Confidence 66544
|
| >d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: HIV Tat-specific factor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.3e-13 Score=105.11 Aligned_cols=80 Identities=24% Similarity=0.411 Sum_probs=68.6
Q ss_pred ccccceeecCC--CccCc---------hHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 149 RQEGKIFVGNL--PNWIK---------KHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 149 ~~~~~~~v~nl--~~~~~---------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
+..++|+|.|+ +.++. +++|++.|++||.|..|++..+ +++||+||+|++.++|.+|+..| |
T Consensus 6 ~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~-----~~~G~~fV~f~~~e~A~~A~~~l--n 78 (99)
T d2dita1 6 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-----HPDGVASVSFRDPEEADYCIQTL--D 78 (99)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-----CTTCEEEEECSCHHHHHHHHHHS--T
T ss_pred CCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCC-----CCccEEEEEECCHHHHHHHHHHh--C
Confidence 34568999999 55432 2578999999999999998765 34799999999999999999999 9
Q ss_pred Ceeecceeeeeecccccc
Q 003749 218 GVEFHGRVLTVKLDDGRR 235 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~~ 235 (798)
|..++||+|+|+++.++.
T Consensus 79 g~~~~gr~i~v~~~~g~~ 96 (99)
T d2dita1 79 GRWFGGRQITAQAWDGTT 96 (99)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CcEECCEEEEEEEeCCcC
Confidence 999999999999987764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.9e-10 Score=113.26 Aligned_cols=198 Identities=9% Similarity=0.013 Sum_probs=137.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR-DMEEALSCVRKMKEEGIEMSLVTYSIIVG 374 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 374 (798)
...|+.+...+.+.+.+++|+++++++++.+ +-+..+|+....++...| ++++|+..+++.++.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3456666777777888888888888888874 445567787777777765 4788888888887764 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---
Q 003749 375 GFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGN--- 451 (798)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--- 451 (798)
.+.+.|++++|++.|+++++.+.. +..+|..++.++.+.|++++|++.++++++.+ +.+...|+.+..++.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 888888888888888888877544 67788888888888888888888888888765 4456677776666655554
Q ss_pred ---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 452 ---EEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 452 ---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
+++|++.+.+.++.... +...|+.+...+... ..+++.+.++...+
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 45666666666654322 455555555444332 34555555555544
|
| >d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.4e-12 Score=119.09 Aligned_cols=80 Identities=28% Similarity=0.467 Sum_probs=71.6
Q ss_pred ccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeec
Q 003749 151 EGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKL 230 (798)
Q Consensus 151 ~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~ 230 (798)
.++|||||||+++|+++|+++|++||.|.+++++++ ..+|+++|||||+|.+.++|.+|+... +..++++.+.+..
T Consensus 6 ~r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~~---~~~~~~~~~~~~~ 81 (183)
T d1u1qa_ 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNAR---PHKVDGRVVEPKR 81 (183)
T ss_dssp HHEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHTC---SCEETTEECEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeec-ccCCCccCceecccCCHHHHHHHHHhc---CCcccccchhhhh
Confidence 359999999999999999999999999999999998 889999999999999999999999864 7778888887766
Q ss_pred cccc
Q 003749 231 DDGR 234 (798)
Q Consensus 231 ~~~~ 234 (798)
..++
T Consensus 82 ~~~~ 85 (183)
T d1u1qa_ 82 AVSR 85 (183)
T ss_dssp CCCT
T ss_pred hhhc
Confidence 5443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.2e-10 Score=111.45 Aligned_cols=248 Identities=9% Similarity=0.060 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 003749 332 HVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN-AEAADHWFEEAKERHATLNAIIYGNIIYA 410 (798)
Q Consensus 332 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 410 (798)
..++.+...+.+.+.+++|+++++++++.+. -+...|+....++...|+ +++|++.++++++.+.. +..+|..+..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 3555666667777888888888888888753 367788888888887764 88888888888887544 78888888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC----
Q 003749 411 QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGK---- 486 (798)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 486 (798)
+.+.|++++|++.++++++.. +.+..+|..+...+...|++++|+..|+++++.+.. +...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 888888888888888888875 556888888888888888888888888888887544 67778877777766665
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcC---------
Q 003749 487 --VSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP-DVVLYNNIIRAFCGM--------- 554 (798)
Q Consensus 487 --~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~--------- 554 (798)
+++|++.+.++++.. +.+...|..+...+.. ...+++...++...+..... +...+..++..|...
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 577888888887764 3466677766655543 34567777777766643332 345555666655432
Q ss_pred CChHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 003749 555 GNMDRAIHIVKEMQKERHRPTSRTFMPIIHG 585 (798)
Q Consensus 555 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 585 (798)
..+++|..++..+...--+.-...|.-+...
T Consensus 278 ~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~ 308 (315)
T d2h6fa1 278 DILNKALELCEILAKEKDTIRKEYWRYIGRS 308 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2356777777765543211122345544443
|
| >d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Splicing factor U2AF 65 KDa subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.7e-12 Score=103.08 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=68.8
Q ss_pred cccceeecCC--CccCc--------hHHHHHHhcccCcceEEEEecCCCCC--CCCcceEEEEeCChhHHHHHHHhcccC
Q 003749 150 QEGKIFVGNL--PNWIK--------KHLVMEFFRQFGPIKNVILIKGYNNF--EKNVGFGFVIYDGPAAEKSAMKAVEFD 217 (798)
Q Consensus 150 ~~~~~~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~~~~~ 217 (798)
+++.|.+.|+ +.++. .++|++.|++||.|++|.|.++ ..+ ....|++||+|.+.++|.+|+..| |
T Consensus 3 Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~-~~~~~~~~~g~vfV~f~~~e~A~~A~~~l--~ 79 (104)
T d1o0pa_ 3 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGL--T 79 (104)
T ss_dssp CCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCC-TTSSSCTTCCEEEEEESCHHHHHHHHHHH--S
T ss_pred CCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeec-CCCCccCCceEEEEEECCHHHHHHHHHHH--C
Confidence 3457889998 44433 3478999999999999999876 333 334689999999999999999999 9
Q ss_pred Ceeecceeeeeecccccch
Q 003749 218 GVEFHGRVLTVKLDDGRRL 236 (798)
Q Consensus 218 ~~~~~g~~~~v~~~~~~~~ 236 (798)
|..++||.|.+.+......
T Consensus 80 Gr~f~gR~v~v~f~~~~~y 98 (104)
T d1o0pa_ 80 GRKFANRVVVTKYCDPDSY 98 (104)
T ss_dssp SCCSSSSCCEEEEECHHHH
T ss_pred CCEECCeEEEEEEcCHHHh
Confidence 9999999999999876543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=2e-09 Score=107.04 Aligned_cols=188 Identities=13% Similarity=0.104 Sum_probs=129.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003749 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWF 389 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (798)
+..++|..+|++.++...+.+...|...+..+.+.|++++|..+|+++++........+|...+..+.+.|++++|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888887654455666777888888888888888888888877533323456788888888888888888888
Q ss_pred HHHHhcCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 003749 390 EEAKERHATLNAIIYGNIIYA-QCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECG-F 467 (798)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 467 (798)
+++.+.... +...|...+.. +...|+.+.|..+|+.+.+.. +.+...|...++.+...|+++.|+.+|++..... .
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 888776433 34444444333 344577788888888777753 4456777777777777777777777777776642 2
Q ss_pred Cc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 468 SP--SIISYGCLINLYTKIGKVSKALEVSKVMKS 499 (798)
Q Consensus 468 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (798)
.| ....|...+..-...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 234677777766777777777777776654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=5.3e-09 Score=106.40 Aligned_cols=94 Identities=11% Similarity=-0.024 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CC---CCHHHHH
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPT----LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG--IE---MSLVTYS 370 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~---~~~~~~~ 370 (798)
......+...|++++|++++++..+..-..+ ..+++.+..+|...|++++|+..|++..+.. .. ....++.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3344555666777777777776666521111 1245555566666666666666666655421 00 0122344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
.+...+...|++..+...+.+..
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al 118 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAF 118 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.8e-09 Score=108.56 Aligned_cols=301 Identities=10% Similarity=-0.007 Sum_probs=218.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CChhh
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMS----LVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT-----LNAII 403 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~ 403 (798)
........+...|++++|+.++++.++.....+ ..++..+..+|...|++++|+..|+++.+.... .....
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 334456778899999999999999988632212 346788899999999999999999988763211 12346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHH
Q 003749 404 YGNIIYAQCQTRNMERAEALVRDMEEE----GIDA---PIDIYHMMMDGYTIIGNEEKCLIVFERLKECG----FSPSII 472 (798)
Q Consensus 404 ~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ 472 (798)
+..+...+...|++..+...+.+.... .... ....+..+...+...|+++.+...+.+..... ......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 677788899999999999998876642 1111 13456677889999999999999999887642 222355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 003749 473 SYGCLINLYTKIGKVSKALEVSKVMKSS--GIKHN----MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKP---DVVL 543 (798)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~ 543 (798)
.+..+...+...++..++...+.+.... ..... ...+..+...+...+++++|...++...+..... ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 6677778889999999999888776542 11111 3355666778889999999999998876543322 2456
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC----CC
Q 003749 544 YNNIIRAFCGMGNMDRAIHIVKEMQKE----RHRP-TSRTFMPIIHGFARAGEMKRALEIFDMMRRS----GCI----PT 610 (798)
Q Consensus 544 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~----p~ 610 (798)
+..+..++...|++++|...++++... +..+ ....+..+..+|.+.|++++|.+.+++..+. |.. -.
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~ 333 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence 677888999999999999999887642 2222 3456777888999999999999999887643 221 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Q 003749 611 VHTFNALILGLVEKRQMEKAIEI 633 (798)
Q Consensus 611 ~~~~~~li~~~~~~~~~~~A~~~ 633 (798)
......++..+...++.+++...
T Consensus 334 ~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 334 GEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHH
Confidence 33455566777788887777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=8.4e-11 Score=119.05 Aligned_cols=250 Identities=5% Similarity=-0.106 Sum_probs=148.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 310 GDMHRARQTFENMRARGIEPTLHVYTNLIHAYA----------VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~----------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
+..++|+++++.+++.. +-+...|+..-..+. ..|++++|+.+++..++.. +-+...|..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 34588999999998863 223334544333322 2344677888888877764 33666777777777666
Q ss_pred CC--HHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 003749 380 GN--AEAADHWFEEAKERHATLNAIIY-GNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCL 456 (798)
Q Consensus 380 g~--~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 456 (798)
++ +++|+..++++.+.+.. +...+ ..+..++...++.++|+..++++++.+ +.+..+|+.+..++...|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 54 77888888887776443 44443 344466667777888888777777765 446677777777777777777665
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003749 457 IVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDG 536 (798)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 536 (798)
..+.+..+. . .....+...+...+..+++...+....... ..+...+..+...+...+++++|...+.+..+..
T Consensus 199 ~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENV----L-LKELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHH----H-HHHHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHh----H-HHHHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 555443332 0 011122333445555566666666665543 2233344445555555666666666666655442
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 003749 537 LKPDVVLYNNIIRAFCGMGNMDRAIHIVKEMQKE 570 (798)
Q Consensus 537 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 570 (798)
+. +..++..+..+|...|++++|++.|+++.+.
T Consensus 273 p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 273 KW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22 3445555666666666666666666666655
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=5.4e-09 Score=103.87 Aligned_cols=219 Identities=8% Similarity=0.046 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 313 HRARQTFENMRARGIEPTLHVYTNLIHAYAV--------------GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
+.+..+|++++.. +..+...|..-+..+.+ .+..++|..+|++.++...+-+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3455566666654 13355555554443322 22345666777776654334455566666777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHH
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDG-YTIIGNEEKCLI 457 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~ 457 (798)
.|++++|..+|++++.........+|...+..+.+.|++++|.++|+++.+.+ +.+...|...+.. +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 77777777777777665433334456666666667777777777777766654 2233334333332 233466666666
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 458 VFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSG-IKH--NMKTYSMLINGFLKLKDWANVFAVFEDVMR 534 (798)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 534 (798)
+|+++.+.. ..+...|...++.+.+.|+++.|..+|++..... ..+ ....|...+..-...|+.+.+..+++++.+
T Consensus 191 i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666542 2245566666666666666666666666665542 111 234555555555555666666666665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=1.5e-10 Score=117.25 Aligned_cols=258 Identities=7% Similarity=-0.013 Sum_probs=128.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----------MGNAEAADHWFEEAKERHATLNAIIYGN 406 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (798)
++....+....++|+++++++++.+.. +...|+.....+.. .|++++|+.+|+.+.+.+.. +...|..
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~ 112 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 112 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 333333334457888888888876422 44555544333222 23356666667666665432 5555555
Q ss_pred HHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 003749 407 IIYAQCQTRN--MERAEALVRDMEEEGIDAPIDIYH-MMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTK 483 (798)
Q Consensus 407 l~~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 483 (798)
+..++...++ +++|...+.++.+.. +.+...+. .+...+...+..++|+..++++.+.+.. +...|+.+..++.+
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred hhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 5555554443 566666666666653 22333333 3335555566666666666666554332 45556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 003749 484 IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHI 563 (798)
Q Consensus 484 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 563 (798)
.|++++|...+.+..+.. + .. ..++..+...+..+++...
T Consensus 191 ~~~~~~A~~~~~~~~~~~--~---~~-----------------------------------~~~~~~~~~l~~~~~a~~~ 230 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENVL--L---KE-----------------------------------LELVQNAFFTDPNDQSAWF 230 (334)
T ss_dssp HSCCCCSSSCCSSCHHHH--H---HH-----------------------------------HHHHHHHHHHCSSCSHHHH
T ss_pred hcCHHHHHHHHHHhHHhH--H---HH-----------------------------------HHHHHHHHHhcchhHHHHH
Confidence 666555443333222210 0 00 0111122223334444444
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 564 VKEMQKERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLA 640 (798)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 640 (798)
+......... +...+..++..+...+++++|...+.+..+.... +...+..+..+|...|++++|++.+++.++.
T Consensus 231 ~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 231 YHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444443321 3333344444555555555665555555443221 3344455555555666666666666665554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=2.7e-09 Score=103.26 Aligned_cols=218 Identities=11% Similarity=-0.032 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003749 264 EWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV 343 (798)
Q Consensus 264 ~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 343 (798)
+.++..+++++......-. -....|..+..+|.+.|++++|+..|++.++.. +.+..+|+.+..+|.+
T Consensus 16 e~al~~~~e~l~~~~~~~~-----------~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~ 83 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDD-----------ERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQ 83 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHH
Confidence 6777888888765432100 023567778899999999999999999999874 5577889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 003749 344 GRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEAL 423 (798)
Q Consensus 344 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 423 (798)
.|++++|++.|+++++... -+..+|..++.+|...|++++|++.|++..+.... +......+...+.+.+..+.+..+
T Consensus 84 ~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (259)
T d1xnfa_ 84 AGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVL 161 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999998743 35778889999999999999999999999887533 555555555566666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003749 424 VRDMEEEGIDAPIDIYHMMMDGYTIIGN----EEKCLIVFERLKECGFSP-SIISYGCLINLYTKIGKVSKALEVSKVMK 498 (798)
Q Consensus 424 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (798)
......... ....++ ++..+..... .+.+...+...... .+ ...+|..+..+|...|++++|++.|++.+
T Consensus 162 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 162 KQHFEKSDK--EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHHSCC--CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhccch--hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 665555421 222222 2222222211 11121111111110 01 12345566777777777777777777776
Q ss_pred HC
Q 003749 499 SS 500 (798)
Q Consensus 499 ~~ 500 (798)
..
T Consensus 237 ~~ 238 (259)
T d1xnfa_ 237 AN 238 (259)
T ss_dssp TT
T ss_pred Hc
Confidence 64
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.1e-09 Score=102.79 Aligned_cols=150 Identities=9% Similarity=-0.096 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003749 312 MHRARQTFENMRARGIEP---TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHW 388 (798)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (798)
.+.++..++++....... ...+|..+..+|.+.|++++|++.|++.++.. +-+..+|+.++.+|.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 455666666666542111 22366677788888888888888888888764 33677888888888888888888888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 389 FEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
|+++++.+.. +..++..+..+|...|++++|.+.|++.++.. +.+......+...+.+.+..+.+..+......
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 8888876543 56677788888888888888888888887764 23444444444455555555555555555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.73 E-value=1.6e-05 Score=76.00 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=86.8
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 296 RREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV----GRDMEEALSCVRKMKEEGIEMSLVTYSI 371 (798)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 371 (798)
+..+..|...+.+.||+++|++.|++..+.| +...+..|..+|.. ..++..|...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3455666667777788888888888887765 56666666666665 557777777777777654 4444455
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 003749 372 IVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC----QTRNMERAEALVRDMEEEGIDAPIDIYHMMM 443 (798)
Q Consensus 372 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 443 (798)
+...+.. ..+.+.|...|+.....|. ......+...+. .......+...+......+ +...+..|.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 5444443 3556667777776665542 222222322222 1233444555555544432 344444454
Q ss_pred HHHHh----cCCHHHHHHHHHHHHH
Q 003749 444 DGYTI----IGNEEKCLIVFERLKE 464 (798)
Q Consensus 444 ~~~~~----~g~~~~A~~~~~~~~~ 464 (798)
..|.. ..+...+..+++...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~ 174 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACD 174 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccc
Confidence 44443 2333444444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=3.5e-07 Score=89.45 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCCCHHH
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRAR----GIEP-TLHVYTNLIHAYAVGRDMEEALSCVRKMKEE----G-IEMSLVT 368 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~ 368 (798)
|....+.|...|++++|++.|.++.+. +-.+ ...+|+.+..+|.+.|++++|++.+++..+. | ......+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 333455677777888888887777653 1011 1235666777777777777777777665442 1 0001233
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003749 369 YSIIVGGFA-KMGNAEAADHWFEEAKERH----ATL-NAIIYGNIIYAQCQTRNMERAEALVRDMEE 429 (798)
Q Consensus 369 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 429 (798)
+..++..|. ..|++++|++.|+++.+.. ... ...++..++.+|.+.|++++|.++|+++..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 444444443 3466666666666554310 000 112344444455555555555555555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.67 E-value=3.7e-05 Score=73.42 Aligned_cols=224 Identities=12% Similarity=-0.026 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAADHWFEEAKERHATLNAIIYG 405 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (798)
|...+..|...+.+.+++++|++.|++..+.| +...+..|..+|.. ..+...|...++.....+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566667777778888888888888888765 66777777777775 567788888888877654 334444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 003749 406 NIIYAQCQ----TRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT----IIGNEEKCLIVFERLKECGFSPSIISYGCL 477 (798)
Q Consensus 406 ~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 477 (798)
.+...+.. ..+.++|...++...+.|. ......+...+. .......+...+.+....+ +...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 44444432 4566777777777776652 233333333333 2344556666666655532 45556666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003749 478 INLYTK----IGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLK----LKDWANVFAVFEDVMRDGLKPDVVLYNNIIR 549 (798)
Q Consensus 478 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 549 (798)
...|.. ..+...+...++...+.| +......|...|.. .+++++|+..|++..+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 666654 344556666666665543 44444444444443 355666666666665543 3444555555
Q ss_pred HHHc----CCChHHHHHHHHHHHHCC
Q 003749 550 AFCG----MGNMDRAIHIVKEMQKER 571 (798)
Q Consensus 550 ~~~~----~g~~~~A~~~~~~~~~~~ 571 (798)
+|.+ ..+.++|.++|++....|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5543 224555666666555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=7.1e-07 Score=80.72 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=43.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
...+...|++++|++.|+++. .++..+|..+..+|.+.|++++|++.|++.++.+. -+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccH
Confidence 334445555555555554321 33444555555555555555555555555555432 2444555555555555555
Q ss_pred HHHHHHHHHHHh
Q 003749 383 EAADHWFEEAKE 394 (798)
Q Consensus 383 ~~A~~~~~~~~~ 394 (798)
++|++.|++.+.
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=8.1e-07 Score=80.33 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=109.4
Q ss_pred hHHHHHHHHHH-hcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003749 264 EWHRREFRKAV-ETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYA 342 (798)
Q Consensus 264 ~~a~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 342 (798)
-+|.++|++.. ......|...+..|.++..+++..|..+..+|...|++++|++.|++.++.+ +.+...|+.+..+|.
T Consensus 3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 3 VEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 46677777643 4456678889999999888899999999999999999999999999999986 567889999999999
Q ss_pred ccCChHHHHHHHHHHHHcCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003749 343 VGRDMEEALSCVRKMKEEGI--------------EM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHAT 398 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~--------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (798)
+.|++++|++.|++.++..- .. ...++..+..+|.+.|++++|++.|+........
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999876310 01 1355667788888899999999988888776443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=7e-07 Score=87.22 Aligned_cols=128 Identities=16% Similarity=0.022 Sum_probs=67.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----ChhhHHH
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEE----GIEM-SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATL-----NAIIYGN 406 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~ 406 (798)
...+|...|++++|++.|.+..+. +-.+ -..+|..++.+|.+.|++++|++.|++..+..... ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355677888888888888887652 1111 13567788888888888888888887765421100 0223333
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003749 407 IIYAQC-QTRNMERAEALVRDMEEE----GIDA-PIDIYHMMMDGYTIIGNEEKCLIVFERLKE 464 (798)
Q Consensus 407 l~~~~~-~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (798)
++.+|. ..|++++|++.+++..+. +... ...++..++..|...|++++|+.+|+++..
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 443442 235555555555544321 0000 012234444444444444444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=9.5e-07 Score=72.40 Aligned_cols=93 Identities=19% Similarity=0.109 Sum_probs=61.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003749 302 MVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGN 381 (798)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 381 (798)
..+.+...|++++|+.+|.++++.. +.+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..++.+|...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 4555666677777777777766653 4455566666677777777777777777766654 2356666667777777777
Q ss_pred HHHHHHHHHHHHhcC
Q 003749 382 AEAADHWFEEAKERH 396 (798)
Q Consensus 382 ~~~A~~~~~~~~~~~ 396 (798)
+++|+..|++.++..
T Consensus 87 ~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777666653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=8.7e-07 Score=77.51 Aligned_cols=106 Identities=15% Similarity=0.049 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003749 299 FGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK 378 (798)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 378 (798)
+....+.|.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|++.++.. +-+..+|..++.+|..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 3445667778888888888888888775 4566777788888888888888888888887764 3366778888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 003749 379 MGNAEAADHWFEEAKERHATLNAIIYGNI 407 (798)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 407 (798)
.|++++|+..|+++...+.. +...+..+
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~-~~~~~~~l 118 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPH-DKDAKMKY 118 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 88888888888888776432 44444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.3e-06 Score=71.50 Aligned_cols=92 Identities=15% Similarity=0.044 Sum_probs=63.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 003749 337 LIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRN 416 (798)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 416 (798)
....+.+.|++++|+.+|++.++.. +-+...|..+..+|.+.|++++|+..|+++++.+.. +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 4556667777777777777777664 336667777777777777777777777777766433 66667777777777777
Q ss_pred hHHHHHHHHHHHHc
Q 003749 417 MERAEALVRDMEEE 430 (798)
Q Consensus 417 ~~~A~~~~~~m~~~ 430 (798)
+++|+..|++.++.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2e-06 Score=75.10 Aligned_cols=94 Identities=12% Similarity=-0.041 Sum_probs=69.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 003749 336 NLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTR 415 (798)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 415 (798)
.....|.+.|++++|+..|++.++.+ +-+...|..+..+|...|++++|+..|+++++.+.. +..+|..++.+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence 34556777888888888888887764 336777778888888888888888888888776433 6677777777788888
Q ss_pred ChHHHHHHHHHHHHcC
Q 003749 416 NMERAEALVRDMEEEG 431 (798)
Q Consensus 416 ~~~~A~~~~~~m~~~~ 431 (798)
++++|.+.+++..+..
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 8888888887777764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=6e-07 Score=82.24 Aligned_cols=99 Identities=19% Similarity=0.088 Sum_probs=68.7
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 294 PSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIV 373 (798)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 373 (798)
|+...+....+.|.+.|++++|+..|+++++.. +.+...|+.+..+|.+.|++++|+..|++.++.. +-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 455556666777777777777777777777664 4466667777777777777777777777776643 22566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003749 374 GGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~ 394 (798)
.+|.+.|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=3.4e-06 Score=77.02 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003749 609 PTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALL 688 (798)
Q Consensus 609 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 688 (798)
|+...+......|.+.|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..|+++++.... +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 566667777888899999999999999888765 557788888999999999999999999999876543 677888899
Q ss_pred HHHHHcCChHHHHHHHHHHHhC
Q 003749 689 KACCKSGRMQSALAVTKEMSAQ 710 (798)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~ 710 (798)
.+|.+.|++++|+..|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999888753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=0.0008 Score=65.07 Aligned_cols=51 Identities=10% Similarity=0.026 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003749 685 EALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADL 738 (798)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 738 (798)
..++..+-+.+++.-...+++.....+ +..+.+.|.+.|...++++.-.+.
T Consensus 252 ~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 252 TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTS 302 (336)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHH
Confidence 345555666777777777777766544 456788888888888886554333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.27 E-value=3.6e-06 Score=68.16 Aligned_cols=87 Identities=11% Similarity=0.036 Sum_probs=39.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNA 382 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 382 (798)
...+.+.|++++|+..|+++++.. +.+..+|..+..++.+.|++++|+..|++.++.. +-+..+|..++.+|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 334444444444444444444442 2234444444444444444444444444444432 11344444444444444444
Q ss_pred HHHHHHHHH
Q 003749 383 EAADHWFEE 391 (798)
Q Consensus 383 ~~A~~~~~~ 391 (798)
++|++.|++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.27 E-value=0.0013 Score=63.59 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
|..-...++..|.+.|.++.|..+|..+.+ |..++..|.+.+++..|.+++.+.. +..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 333344455555555666555555544321 3445555555555555555554331 3445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 003749 410 AQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIG 485 (798)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 485 (798)
.+.+...+.-+ .+.......+......++..|...|.+++...+++..... -..+...++.++..|++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 55544443322 1111222223334445555566666666666666554332 1234455566666665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=4.3e-06 Score=67.66 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=68.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003749 651 TIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRG 730 (798)
Q Consensus 651 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 730 (798)
.+...+.+.|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.+ +.+...|..|+.+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 3455667778888888888887776544 67777788888888888888888888877765 566777788888888888
Q ss_pred CHHHHHHHHHHHH
Q 003749 731 DVWEAADLMQQMK 743 (798)
Q Consensus 731 ~~~~A~~~~~~m~ 743 (798)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888877653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=4.5e-07 Score=96.01 Aligned_cols=228 Identities=6% Similarity=-0.108 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003749 265 WHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVG 344 (798)
Q Consensus 265 ~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 344 (798)
+|.+.|++++..++. ....+..+..+|...|++++| |++++.. .|+...-..+...+. .
T Consensus 4 eA~q~~~qA~~l~p~---------------~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~ 62 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD---------------MTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-N 62 (497)
T ss_dssp HHHHHHHHHHHHHGG---------------GTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-H
T ss_pred HHHHHHHHHHHcCCC---------------CHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-H
Confidence 678899999988775 233344556667777777665 6666654 221111011111111 1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 003749 345 RDMEEALSCVRKMKEEGIEMSLVTYSI--IVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEA 422 (798)
Q Consensus 345 g~~~~A~~~~~~m~~~g~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 422 (798)
..+..+++.++...+..-.++..-... +...+...+.++.|+..|....... ..+...+..+...+.+.|+.++|..
T Consensus 63 ~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 63 HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------
T ss_pred HHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 224556677776665432222221111 1112223445556655555444332 2256667778888888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003749 423 LVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGI 502 (798)
Q Consensus 423 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 502 (798)
.+.+..... ...++..+...+...|++++|+..|.+..+.... +...|+.|...|...|+..+|+..|.+.....
T Consensus 142 ~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~- 216 (497)
T d1ya0a1 142 PQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK- 216 (497)
T ss_dssp -CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-
T ss_pred HHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 777665532 1356777888888999999999999998886433 56789999999999999999999998888765
Q ss_pred CCCHHHHHHHHHHHHhc
Q 003749 503 KHNMKTYSMLINGFLKL 519 (798)
Q Consensus 503 ~~~~~~~~~ll~~~~~~ 519 (798)
.|-..++..|...|.+.
T Consensus 217 ~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKA 233 (497)
T ss_dssp BCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 45677777777776543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=3e-05 Score=68.01 Aligned_cols=127 Identities=12% Similarity=-0.053 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.+....+.|.+.|++++|+..|++.+...-.... ....-......+ ...+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 4455677889999999999999988874110000 000011111111 1124555666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYT 447 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 447 (798)
+.|++++|+..+++++..+.. +..++..++.+|...|++++|+..|++.++.+ +.+..+...+..+..
T Consensus 74 k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666666666666666665432 56666666666666666666666666666653 224444444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=4e-05 Score=67.21 Aligned_cols=62 Identities=8% Similarity=-0.054 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 403 IYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 403 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
+|..+..+|.+.|++++|++.+++.++.+ +.+..+|..++.+|...|++++|+..|++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445555556666666666666655553 334555555555566666666666666655554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=8.6e-06 Score=66.68 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 003749 650 TTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGR---MQSALAVTKEMSAQKIPRN-TFVYNILIDG 725 (798)
Q Consensus 650 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 725 (798)
..++..+...+++++|.+.|++.+..+.. +..++..+..++.+.++ +++|+.+++++...+-.++ ..+|..|+.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34556666667777777777777766543 56666666666665443 3457777777665441122 2256667777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003749 726 WARRGDVWEAADLMQQMKQEGVQPDVHTYTSF 757 (798)
Q Consensus 726 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 757 (798)
|.+.|++++|++.|+++++ +.|+..-...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 7777777777777777776 35554433333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=6.7e-06 Score=67.36 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGR---DMEEALSCVRKMKEEGIEMS-LVTYSIIVGGF 376 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~ 376 (798)
.+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.+ ++++|+.+|+++++.+..++ ..+|..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45666667777777777777777764 446666666777766543 33457777777665432222 23566677777
Q ss_pred HhcCCHHHHHHHHHHHHhcC
Q 003749 377 AKMGNAEAADHWFEEAKERH 396 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~ 396 (798)
.+.|++++|++.|+++++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 77777777777777777653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=9.1e-05 Score=63.48 Aligned_cols=123 Identities=13% Similarity=0.026 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
..+......+.+.|++.+|+..|.++++.-.... .............+ ...+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~~~~~~~~~~~~-------~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWDDQILLDKKKNI-------EISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCCCHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhhhHHHHHhhhhH-------HHHHHhhHHHHH
Confidence 3455555667777888888877777665310000 00000000000000 123667788888
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003749 692 CKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPD-VHTYTSF 757 (798)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l 757 (798)
.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|+..|++..+. .|+ ..+...+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l 141 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 141 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888888888888776 667788888888888888888888888888874 454 4444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=6.8e-05 Score=62.02 Aligned_cols=96 Identities=7% Similarity=0.045 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 003749 649 YTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQK--IPRN----TFVYNIL 722 (798)
Q Consensus 649 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l 722 (798)
+..+...+.+.|++++|++.|.++++.+.. +...+..+..+|.+.|++++|+..++++++.. .... ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344556666677777777777777766543 56666667777777777777777777665421 0000 2356666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003749 723 IDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 723 ~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
+..+...+++++|++.|++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 66777777777777777776653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=5.8e-05 Score=66.16 Aligned_cols=128 Identities=12% Similarity=0.044 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 297 REFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGF 376 (798)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 376 (798)
..+....+.+...|++++|++.|.++++. +..........+... +. +.+...|..+..+|
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~ 87 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAK----LQ----PVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGG----GH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHH----hC----hhhHHHHHHHHHHH
Confidence 34556667777778888888877776542 000000011111100 00 11344566677777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 003749 377 AKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGY 446 (798)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 446 (798)
.+.|++++|+..|+++++.+.. +..+|..++.+|...|++++|++.|++.++.. +.+..++..+..+.
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 7788888888888877776533 66777777777777777777777777777764 23444444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.95 E-value=0.00011 Score=62.93 Aligned_cols=127 Identities=13% Similarity=-0.004 Sum_probs=88.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003749 577 RTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGY 656 (798)
Q Consensus 577 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~ 656 (798)
..+......+.+.|++.+|+..|.++++.-... ....-......... ....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~-------------~~~~~~~~~~~~~~-------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT-------------EEWDDQILLDKKKN-------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC-------------TTCCCHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcch-------------hhhhhHHHHHhhhh-------HHHHHHhhHHHHH
Confidence 445566778899999999999999988642110 00000000001111 1134677888889
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003749 657 ASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (798)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (798)
.+.|++++|++.+.++++.... +..+|..++.+|...|++++|...|++..+.+ +.|..+...+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 144 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 144 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999999999887644 78889999999999999999999999998865 4456665554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=6.7e-05 Score=62.06 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=25.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMK 358 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 358 (798)
.+.+.|.+.|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|+..+++++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 33444444444444444444444442 2234444444444444444444444444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=5.3e-05 Score=66.41 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 003749 330 TLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIY 409 (798)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 409 (798)
+...|+.+..+|.+.|++++|+..+++.++.. +-+..+|..++.+|.+.|++++|+..|+++++.+.. +..+...+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34467788899999999999999999999875 347889999999999999999999999999987543 5555555544
Q ss_pred HHH
Q 003749 410 AQC 412 (798)
Q Consensus 410 ~~~ 412 (798)
+..
T Consensus 154 ~~~ 156 (169)
T d1ihga1 154 VKQ 156 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.93 E-value=6.6e-05 Score=65.65 Aligned_cols=130 Identities=11% Similarity=-0.058 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003749 298 EFGLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFA 377 (798)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 377 (798)
.+....+.+.+.|++.+|+..|...+..- +. ..+...+-....+.+ ...+|+.+..+|.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~~------------~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EM------------EYGLSEKESKASESF-------LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TT------------CCSCCHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH------------hhccchhhhhhcchh-------HHHHHHhHHHHHH
Confidence 45567788999999999999998877530 00 000000011111111 1234555666677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIG 450 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 450 (798)
+.|++++|+..+++++..+. .+..+|..+..+|...|++++|.+.|.++++.. +.+..+...+..+....+
T Consensus 76 ~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred Hhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 77777777777777766543 366666677777777777777777777776653 334445555544444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.92 E-value=8.8e-05 Score=64.80 Aligned_cols=143 Identities=13% Similarity=-0.006 Sum_probs=99.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 003749 333 VYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQC 412 (798)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (798)
.+......+.+.|++.+|+..|++.+.. ++ . ..+...+.....+.+ ...+|..+..+|.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~-~~-~------------~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSW-LE-M------------EYGLSEKESKASESF-------LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HT-T------------CCSCCHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH-H------------hhccchhhhhhcchh-------HHHHHHhHHHHHH
Confidence 4555677788899999999999887652 00 0 000000111111111 2346777889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH-HHH
Q 003749 413 QTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVS-KAL 491 (798)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~ 491 (798)
+.|++++|+..+++.++.+ +.+..+|..+..+|...|++++|+..|.+.++.... +..+...+-.+..+.+... ...
T Consensus 76 ~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999985 667899999999999999999999999999986432 5666666666665555443 344
Q ss_pred HHHHHHH
Q 003749 492 EVSKVMK 498 (798)
Q Consensus 492 ~~~~~m~ 498 (798)
++|..|.
T Consensus 154 k~~~~~f 160 (168)
T d1kt1a1 154 RTYANMF 160 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=3.4e-06 Score=89.02 Aligned_cols=227 Identities=10% Similarity=0.018 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 003749 489 KALEVSKVMKSSGIKHN-MKTYSMLINGFLKLKDWANVFAVFEDVMRDGLKPDVVLYNNIIRAFCGMGNMDRAIHIVKEM 567 (798)
Q Consensus 489 ~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 567 (798)
+|.+.|+++.+. +|+ ...+..+..+|...+++++| |++++...+. ....++...... ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~Lw--~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQDLW--NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHHHH--HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHHHH--HHHHHHHHHHHHHh
Confidence 677888888763 333 33555566777777777765 6666554211 011111111111 11244566666666
Q ss_pred HHCCCCCCcccHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003749 568 QKERHRPTSRTFMPIIHGF--ARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPN 645 (798)
Q Consensus 568 ~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 645 (798)
.+....++..-....+..+ ...+.++.++..+....+... .+...+..+...+.+.|+.++|...+....... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 5544333333222222222 123444455444444333222 245556666667777777777777766654321 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003749 646 EHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDG 725 (798)
Q Consensus 646 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 725 (798)
..++..+.+.+...|++++|...|+++.+.... +...|+.|+..|...|+..+|...|.+.+... +|-...+..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 346667777777788888888888888776543 56777888888888888888888888777665 4666777777776
Q ss_pred HHHc
Q 003749 726 WARR 729 (798)
Q Consensus 726 ~~~~ 729 (798)
|.+.
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00025 Score=62.26 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=91.9
Q ss_pred CHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003749 610 TVHTFNALI---LGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEA 686 (798)
Q Consensus 610 ~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 686 (798)
|...|..++ ......|++++|...|.+.++.. +... +......+.+...-..+... ....+..
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~ 72 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTA 72 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHH
Confidence 344444443 46778899999999999887642 1110 00111111111111222221 2346788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 003749 687 LLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMK-----QEGVQPDVHTYT 755 (798)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~pd~~~~~ 755 (798)
+..++.+.|++++|+..+++++..+ +.+...|..++.+|.+.|+..+|++.|+++. +.|+.|...+-.
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9999999999999999999999877 7788999999999999999999999999974 469999987643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.69 E-value=0.00061 Score=59.65 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003749 300 GLMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKM 379 (798)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 379 (798)
..........|++++|.+.|...+... +... +........+...-..+... ....+..++..+.+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 344566778899999999998888751 1111 00011111111222222221 344667777778888
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChh
Q 003749 380 GNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEE-----EGIDAPID 437 (798)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 437 (798)
|++++|+..++++...+. .+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...
T Consensus 81 g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 888888888888877643 3777777788888888888888777777643 45555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.60 E-value=0.0002 Score=60.43 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHhcCCccHHHHHHHHHhhcCCCHhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCH
Q 003749 262 EREWHRREFRKAVETQPENWQAVVSAFERIKKPSRREFGLMVNYYARRGD----------MHRARQTFENMRARGIEPTL 331 (798)
Q Consensus 262 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~ 331 (798)
.+++|++.|+++++.+|. +...+..+..+|...++ +++|+..|+++++.+ +.+.
T Consensus 12 ~fe~A~~~~e~al~~~P~---------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~ 75 (145)
T d1zu2a1 12 LFEQIRQDAENTYKSNPL---------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKD 75 (145)
T ss_dssp HHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred cHHHHHHHHHHHHhhCCc---------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhh
Confidence 459999999999999998 66677777777765444 455666666666553 3344
Q ss_pred HHHHHHHHHHHcc
Q 003749 332 HVYTNLIHAYAVG 344 (798)
Q Consensus 332 ~~~~~ll~~~~~~ 344 (798)
.+|+.+..+|...
T Consensus 76 ~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 76 EAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHc
Confidence 5555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.51 E-value=0.00013 Score=61.72 Aligned_cols=72 Identities=8% Similarity=-0.122 Sum_probs=37.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003749 621 LVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASL----------GDTGKAFEYFTKLRNEGLELDVFTYEALLKA 690 (798)
Q Consensus 621 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 690 (798)
|-+.+.+++|+..|+..++.. +.+...+..+..+|... +.+++|++.|+++++.... +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 344555666666666666554 44555566666555433 2234455555555554432 44455555555
Q ss_pred HHHc
Q 003749 691 CCKS 694 (798)
Q Consensus 691 ~~~~ 694 (798)
|...
T Consensus 85 y~~~ 88 (145)
T d1zu2a1 85 YTSF 88 (145)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.44 E-value=9.6e-05 Score=69.57 Aligned_cols=123 Identities=11% Similarity=-0.017 Sum_probs=69.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAA 385 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 385 (798)
..+.|++++|+..|++.++.. +.|...+..+...|+..|++++|+..|+...+.. +-+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 345678888888888887774 4566777788888888888888888888877753 12344454444444333333332
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEE 430 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 430 (798)
...+......+...+...+...+..+...|+.++|.++++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 221111111111112233333445556666777777666666554
|
| >d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Synaptojanin 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00021 Score=51.53 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=47.5
Q ss_pred HHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeeccc
Q 003749 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDD 232 (798)
Q Consensus 167 ~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~ 232 (798)
+|-+.|+.||+|.-||++.| --.|+|.+-.+|.+|++. +|.++.||.|+|....
T Consensus 40 ~Llq~l~~~GeViLvRFv~d---------~mwVTF~dG~SAL~al~l---~g~~v~G~~l~It~~~ 93 (95)
T d1ufwa_ 40 ELMQTLGSYGTIVLVRINQG---------QMLVTFADSHSALSVLDV---DGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHSCCSEEEEETT---------EEEEECSCSHHHHHHHHG---GGSEETTEEEEEECCC
T ss_pred HHHHHHhhCCeEEEEEEeCC---------eEEEEECCcHHHHHHhcc---CCeEEcceEEEEecCC
Confidence 67788999999999999976 689999999999999864 8999999999997653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.37 E-value=0.00015 Score=68.09 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=25.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 343 VGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 343 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
+.|++++|+..+++.++.. +-|...+..++..|+..|++++|+..|+...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455555555555555442 224445555555555555555555555554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.30 E-value=0.0015 Score=55.68 Aligned_cols=91 Identities=15% Similarity=0.090 Sum_probs=52.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCC-CC----------HHHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCC-
Q 003749 303 VNYYARRGDMHRARQTFENMRARGIE-PT----------LHVYTNLIHAYAVGRDMEEALSCVRKMKEEG-----IEMS- 365 (798)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~~~~~~~~-~~----------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~~~- 365 (798)
...+.+.|++++|++.|++.++..-. ++ ...|+.+..+|.+.|++++|++.+++.++.. ..++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 45566778888888888888763111 11 2356666666777777777776666665420 0111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003749 366 ----LVTYSIIVGGFAKMGNAEAADHWFEEAK 393 (798)
Q Consensus 366 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (798)
..+++.+..+|.+.|++++|+..|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1134445555555566665555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.20 E-value=0.0026 Score=54.13 Aligned_cols=90 Identities=12% Similarity=0.022 Sum_probs=54.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-C----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCCCC---
Q 003749 655 GYASLGDTGKAFEYFTKLRNEGLE-L----------DVFTYEALLKACCKSGRMQSALAVTKEMSAQ-----KIPRN--- 715 (798)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--- 715 (798)
.+...|++++|++.|++.++.... + ....|+.+..+|.+.|++++|...+++.+.. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666665543111 1 1345666667777777777777666666531 11111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 716 --TFVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 716 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
...|+.++.+|...|++++|++.|++.++
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567788888888888888888888765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.98 E-value=0.0082 Score=49.21 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=59.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003749 311 DMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAK----MGNAEAAD 386 (798)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~ 386 (798)
|+++|+++|++..+.| +...+..|.. ....+.++|+++|++..+.| +...+..|...|.. ..+.++|+
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 5667777777777765 3333333332 23356667777777666654 45555555555543 33456666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 003749 387 HWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAEALVRDMEEEG 431 (798)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 431 (798)
++|++..+.+ +......|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666665543 33444444444443 234555555555555444
|
| >d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Limkain-b1, LKAP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0019 Score=43.95 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=51.7
Q ss_pred HHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhcccCCeeecceeeeeecccc
Q 003749 167 LVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAVEFDGVEFHGRVLTVKLDDG 233 (798)
Q Consensus 167 ~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g~~~~v~~~~~ 233 (798)
.|.+.|+++|.|.++.+..- ..| .-.|-|...+..+|..|+..| +...|++++|.|.++.+
T Consensus 12 ~L~~~f~~h~~V~sv~l~~~--~dg--~~~A~V~v~~~q~A~~~v~~L--hR~KiG~KRI~Vs~~~~ 72 (73)
T d2dgxa1 12 LLQEAFARHGKVKSVELSPH--TDY--QLKAVVQMENLQDAIGAVNSL--HRYKIGSKKILVSLATG 72 (73)
T ss_dssp HHHHHHHHHSCEEEEEECSC--CST--TCCEEEEESSHHHHHHHHHHH--TTEEETTEEEEEEECCC
T ss_pred HHHHHHHhheeEEEEEEEec--cCC--cEEEEEEcCCHHHHHHHHHHH--HHHhcCCeEEEEEEecC
Confidence 45678899999999999753 223 348899999999999999999 99999999999998754
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.87 E-value=0.047 Score=42.13 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=99.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003749 586 FARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKA 665 (798)
Q Consensus 586 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 665 (798)
+.-.|..++..+++.+.... .+..-||.+|.-....-+-+...++++..-.. -| ....+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 44567888888888887764 36677777777766666666666666655432 11 1233444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 666 FEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
...+-.+- -+...++..++.+.+.|+-+.-.++.+.+.+.+ .++....-.+..+|.+.|...++.+++.+..+.
T Consensus 76 v~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 44443331 244456777888889999999999988877755 788899999999999999999999999999998
Q ss_pred CCC
Q 003749 746 GVQ 748 (798)
Q Consensus 746 g~~ 748 (798)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.0032 Score=48.13 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003749 367 VTYSIIVGGFAKMGNAEAADHWFEEAKER 395 (798)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 395 (798)
.+++.|..+|.+.|++++|+..|+++++.
T Consensus 47 ~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 47 SVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34445555555555555555555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0036 Score=47.81 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 003749 365 SLVTYSIIVGGFAKMGNAEAADHWFEEAKERHA-----TL-NAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDI 438 (798)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 438 (798)
+...+..++..+.+.|++++|+..|++..+... .. ...++..+..+|.+.|++++|++.++++++.+ +.+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 344555677777777777777777777665311 11 13456667777777777777777777777654 223444
Q ss_pred HHH
Q 003749 439 YHM 441 (798)
Q Consensus 439 ~~~ 441 (798)
++.
T Consensus 83 ~~N 85 (95)
T d1tjca_ 83 NGN 85 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.79 E-value=0.017 Score=47.21 Aligned_cols=109 Identities=13% Similarity=0.046 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHH
Q 003749 346 DMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQ----TRNMERAE 421 (798)
Q Consensus 346 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 421 (798)
|+++|+++|++..+.| +...+..|.. ....+.++|+++|++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 5666777777766665 2233333322 22345566666666655543 34444444444432 23445555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 003749 422 ALVRDMEEEGIDAPIDIYHMMMDGYTI----IGNEEKCLIVFERLKEC 465 (798)
Q Consensus 422 ~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 465 (798)
++|++..+.| +......|...|.. ..+.++|+++|++..+.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 5555555443 23333344444432 23444444444444443
|
| >d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Smg-4/UPF3 domain: RNA processing protein UPF3x, RRM domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.015 Score=42.79 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=58.2
Q ss_pred cceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCC-cceEEEEeCChhHHHHHHHhcccCCeeecc
Q 003749 152 GKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKN-VGFGFVIYDGPAAEKSAMKAVEFDGVEFHG 223 (798)
Q Consensus 152 ~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~~~~~~~~~~g 223 (798)
++|-|.+||+..|++++.+.++..|.+.....+..+...+.+ -..|+|.|.+.++...-.+.. +|+.+.+
T Consensus 2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f--~g~~F~D 72 (91)
T d1uw4a_ 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF--DGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH--TTCEEEC
T ss_pred ceEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHc--CCcEEEc
Confidence 478999999999999999999999999888877763333333 368999999999999999888 9888754
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.75 E-value=0.29 Score=37.67 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=67.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003749 306 YARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAA 385 (798)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 385 (798)
+...|..+++.+++.+..... +..-||.+|-.....-+-+-..++++.+-+. + |. ...++....
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--Dl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh-c--Cc----------hhhhcHHHH
Confidence 344566666666666665532 4445555554444444444444444443321 1 11 123333333
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003749 386 DHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKEC 465 (798)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (798)
...|-.+-. +...+...+..+..+|+-++-.++++++.+.+ .++......+..+|.+.|...++-+++.+.-+.
T Consensus 76 v~C~~~~n~-----~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 333332211 22333344455556666666666666655532 445555555566666666666666666655555
Q ss_pred CC
Q 003749 466 GF 467 (798)
Q Consensus 466 ~~ 467 (798)
|.
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 54
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=2.7 Score=41.70 Aligned_cols=419 Identities=10% Similarity=0.024 Sum_probs=238.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 003749 301 LMVNYYARRGDMHRARQTFENMRARGIEPTLHVYTNLIHAYAV--GRDMEEALSCVRKMKEEG-IEMSLVTYSIIVGGFA 377 (798)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~ 377 (798)
..+....+.|+..++.++...+... | ..-|-..-..-.+ .....+...+ +.+.. .+.........+..+.
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~F---l~~~p~~P~~~~lr~~~l~~L~ 83 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNF---VRANPTLPPARTLQSRFVNELA 83 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHH
Confidence 4556677899999988888887422 3 3334333333222 2344444433 33321 1111222344466778
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 003749 378 KMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQTRNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLI 457 (798)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 457 (798)
+.+++++.+..|. ..+.+...-..++.+....|+..+|.+.++.+-..|.. .. +.+..
T Consensus 84 ~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p----------------~~c~~ 141 (450)
T d1qsaa1 84 RREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QP----------------NACDK 141 (450)
T ss_dssp HTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CC----------------THHHH
T ss_pred hccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cc----------------hHHHH
Confidence 8888887665543 12335555566778888899999999888887766521 12 23334
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003749 458 VFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVSKVMKSSGIKHNMKTYSMLINGFLKLKDWANVFAVFEDVMRDGL 537 (798)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 537 (798)
+|..+...|. .+...+..-+..+...|+...|..+...+-.. .......++.....-..+... ....
T Consensus 142 l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~~~------~~~~-- 208 (450)
T d1qsaa1 142 LFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVLTF------ARTT-- 208 (450)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHHHH------HHHS--
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHHHH------HhcC--
Confidence 5555555433 34555556667777889999888887654321 223344444443332222221 1111
Q ss_pred CCCHHHHHHHHHHHHc--CCChHHHHHHHHHHHHCCCCCCcccHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCH
Q 003749 538 KPDVVLYNNIIRAFCG--MGNMDRAIHIVKEMQKERHRPTSRTFMPIIHGF----ARAGEMKRALEIFDMMRRSGCIPTV 611 (798)
Q Consensus 538 ~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~p~~ 611 (798)
..+......+..++.+ ..+.+.|..++......... +...+..+-... ...+..+.+...+......+. +.
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~ 285 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--ST 285 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--ch
Confidence 1233333333333333 24678888888887665322 222232222222 234667788888877766543 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003749 612 HTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLRNEGLELDVFTYEALLKAC 691 (798)
Q Consensus 612 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 691 (798)
.....++......+++..+...++.|.... .-...-.--+..++...|+.++|..+|..+... .+ .|..|. .
T Consensus 286 ~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LA--a 357 (450)
T d1qsaa1 286 SLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--A 357 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--H
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHH--H
Confidence 444445555667889999999998875432 223444456778899999999999999998742 33 333332 2
Q ss_pred HHcCC-hHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 003749 692 CKSGR-MQSALAVTKEMSAQKIPRNTFV---YNILIDGWARRGDVWEAADLMQQMKQEGVQPDVHTYTSFINACSKAGDM 767 (798)
Q Consensus 692 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 767 (798)
.+.|. +.-.. .. .... ...... -..-+..+...|+..+|...|..+.+. .+......+.....+.|..
T Consensus 358 ~~Lg~~~~~~~---~~-~~~~-~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~ 429 (450)
T d1qsaa1 358 QRIGEEYELKI---DK-APQN-VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWW 429 (450)
T ss_dssp HHTTCCCCCCC---CC-CCSC-CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCCCCCCc---CC-CCcc-HHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCh
Confidence 22332 11000 00 0000 001110 112356677889999999999988753 3566777888889999999
Q ss_pred cccccccccchhh
Q 003749 768 QVRFSIPMLTKFY 780 (798)
Q Consensus 768 ~~a~~~~~~~~~~ 780 (798)
+.|+......+.+
T Consensus 430 ~~aI~a~~~~~~~ 442 (450)
T d1qsaa1 430 DLSVQATIAGKLW 442 (450)
T ss_dssp HHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHcc
Confidence 9888775555443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=4.5 Score=39.93 Aligned_cols=355 Identities=10% Similarity=-0.022 Sum_probs=211.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 003749 335 TNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSIIVGGFAKMGNAEAADHWFEEAKERHATLNAIIYGNIIYAQCQT 414 (798)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (798)
...+..+.+.+++.+.+..+. ..+.+...-..++.+....|+-++|...+..+-..|.. .
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~-------------- 135 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-Q-------------- 135 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-C--------------
T ss_pred HHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-C--------------
Confidence 445677888888877665442 23446777778888899999999998888776554322 1
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003749 415 RNMERAEALVRDMEEEGIDAPIDIYHMMMDGYTIIGNEEKCLIVFERLKECGFSPSIISYGCLINLYTKIGKVSKALEVS 494 (798)
Q Consensus 415 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 494 (798)
.+....+|..+.+.|. .+...+-.-+......|+...|..+...+-. ........++...........
T Consensus 136 --p~~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~~----- 203 (450)
T d1qsaa1 136 --PNACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVLT----- 203 (450)
T ss_dssp --CTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHHH-----
T ss_pred --chHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHHH-----
Confidence 2223345555555543 3444444455566677889888887765422 123344444444433322222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHcCCChHHHHHHHHHHH
Q 003749 495 KVMKSSGIKHNMKTYSMLINGFLK--LKDWANVFAVFEDVMRDGLKPDVVLYNNIIR----AFCGMGNMDRAIHIVKEMQ 568 (798)
Q Consensus 495 ~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~ 568 (798)
..... ..+......+..++.+ ..+.+.+..++......... +..-+..+-. .+...+..+.+..++....
T Consensus 204 -~~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~ 279 (450)
T d1qsaa1 204 -FARTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI 279 (450)
T ss_dssp -HHHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred -HHhcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhc
Confidence 11221 2334444444444443 36788888888887665333 3332322222 2334566788888888777
Q ss_pred HCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003749 569 KERHRPTSRTFMPIIHGFARAGEMKRALEIFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMTLAGISPNEHT 648 (798)
Q Consensus 569 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t 648 (798)
.... +.....-.+....+.+++..+...+..+... ........--+..++...|+.++|...|...... ++
T Consensus 280 ~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--- 350 (450)
T d1qsaa1 280 MRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--- 350 (450)
T ss_dssp HTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---
T ss_pred cccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---
Confidence 6643 3333344555567789999999999887532 2223445556678889999999999999988642 33
Q ss_pred HHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003749 649 YTTIMHGYASLGDT-GKAFEYFTKLRNEGLELDVF---TYEALLKACCKSGRMQSALAVTKEMSAQKIPRNTFVYNILID 724 (798)
Q Consensus 649 ~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 724 (798)
|-.++. ..+.|.. .-.. .-...... ... .-...+..+...|...+|...|..+... .+......+..
T Consensus 351 fYG~LA-a~~Lg~~~~~~~----~~~~~~~~-~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~ 421 (450)
T d1qsaa1 351 FYPMVA-AQRIGEEYELKI----DKAPQNVD-SALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLAR 421 (450)
T ss_dssp HHHHHH-HHHTTCCCCCCC----CCCCSCCC-CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred hHHHHH-HHHcCCCCCCCc----CCCCccHH-HhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 433332 2333321 0000 00000000 010 0123356678899999999999988764 36667778888
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 003749 725 GWARRGDVWEAADLMQQMK 743 (798)
Q Consensus 725 ~~~~~g~~~~A~~~~~~m~ 743 (798)
...+.|.++.|+....+..
T Consensus 422 lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 422 YAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8899999999998877663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.28 E-value=0.63 Score=36.20 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003749 680 DVFTYEALLKACCKSG---RMQSALAVTKEMSAQKIPRNT-FVYNILIDGWARRGDVWEAADLMQQMKQ 744 (798)
Q Consensus 680 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 744 (798)
...+--.+.+++.+.. ++++|+.+++++...+ +.+. ..+-.|.-+|.+.|++++|.+.++.+++
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444444444555443 2345555665555432 2222 3445555556666666666666666655
|
| >d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: Canonical RBD domain: Poly(A)-specific ribonuclease PARN species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.74 E-value=0.39 Score=34.98 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=46.2
Q ss_pred cccceeecCCCccCchHHHHHHhcccCcceEEEEecCCCCCCCCcceEEEEeCChhHHHHHHHhc
Q 003749 150 QEGKIFVGNLPNWIKKHLVMEFFRQFGPIKNVILIKGYNNFEKNVGFGFVIYDGPAAEKSAMKAV 214 (798)
Q Consensus 150 ~~~~~~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 214 (798)
.+..+|.-..|......||.++|+.||.|.--.| .| --|||...+.+++..++..+
T Consensus 14 ~RdHVf~~tFP~~Wk~~dI~~lFSpfG~V~VswI-dd--------TSa~V~L~~~e~~~~v~~~~ 69 (100)
T d1whva_ 14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI-DD--------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHTTTCSCCCEEE-ET--------TEEEEECSCHHHHHHHHHHH
T ss_pred CcceeEEEeCCcccchhHHHHHhcCCCceEEEEe-cC--------ceEEEEecCHHHHHHHHHHh
Confidence 3447899999999999999999999999864444 33 26999999999999888765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.60 E-value=1.6 Score=33.78 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003749 371 IIVGGFAKMGNAEAADHWFEEAKE 394 (798)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~ 394 (798)
.|.-+|.+.|++++|++.++.+++
T Consensus 78 ~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 78 YLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333334444444444444444433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.61 E-value=3.6 Score=29.87 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003749 699 SALAVTKEMSAQKIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQE 745 (798)
Q Consensus 699 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 745 (798)
++.+-++.+...++.|+..+...-+.+|.|.+++..|+++|+-.+.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555555543
|