Citrus Sinensis ID: 003752

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------80
MQMQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADNSSLSSSSNTTVTLTPPPPTPTNRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEccccccccccccccEEEEEEEEEccccEEEEcccEEEcc
cHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHEccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccHcHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHcHccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHccHHHHHHHHHccccccccccccHHHHccccccccccccccccccHHHHccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEHHHHHHccccccccccccEEEEEEEEEEccccEEEEccEEEEEc
mqmqalghidfglrspllvpapqprtsskrpsisklntttvsSASKWAHRLLADfqfttadnsslssssnttvtltpppptptnrhvsipiDFYQALGAETHFLGDGIRRAYEariskppqygfspdaLISRRQILQAACETLANASSrreynqgladdhadtiltevpwdkvpGALLVLQEAGETEVVLRIGESLlrerlpksFKQDVVLAMALAYVDIsrdamafnppdyiggCEMLERALKLLQEegasslapdLQAQIDETLEEINPRCVLEllglplsgeyQARREEGLHGMLNILWAVggggataiaggftreSFMNEAFLRMTSAEQVKLFsatpnsipaetFEAYGVALALVAQAFvgkqphliaDADNMFKHLqqnkvptlrdlgsiyipleKHEMEFALERGLCSLLVGKLdecrlwlgldsdkspyrnpaiVDFVlenskeaddndlpGLCKLLETWLAevvfprfrdtsdirfklgdyyddptVLRYLERlegngsspLAAAAAIVRIGATEATAVLDHVKSSTIQALQKvfplgqgdkaVKYVehgetydpvpvveteesltsdqnnfafttdaygtsssddihgeqsiTDKIKDVSVKIMCAGVAIGLVTLVGlkylptrnissVQQKEIGlakasdiidagplldeklgqelPRMDARLAEDIVRKWQniksqafgpdhslgklpevldgQMLKVWTDRASEIAQLGWTYDYSLLNLTIDsvtlsqegRHAWVEATVKESARltdtvhpencdekiSTYTTRYElsstksgwritdgskivyk
MQMQALGHidfglrsplLVPApqprtsskrpsisklntttVSSASKWAHRLLADFQFTTadnsslssssnttvtltpppptptNRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGEsllrerlpksfKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLgldsdkspyrnPAIVDFVLENSKEADDNDLPGLCKLLETWLAEvvfprfrdtsdirfklgdyyddpTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAygtsssddihgEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIksqafgpdhslgkLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKEsarltdtvhpencdekistyttryelsstksgwritdgskivyk
MQMQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADnsslssssnttvtltpppptptnRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWavggggataiaggFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLaaaaaIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
**********************************************WAHRLLADFQF****************************HVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANA*****YNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQ***********QAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVV************FAFT*****************ITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELS****GWRI*********
******G**DFGLRSP**********************************************************************VSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYN******************KVPGALLVLQEAGETEVVLRIGE**********FKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGA**LAPDLQAQIDETLEEINPRCVLELLGLPL***********LHGMLNILWAV************TRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRL********************************PGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVL**************************************************************************************************************DVSVKIMCAGVAIGLVTLVGLKY********************************************AEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSV****EGRHAWVEATVKESARLTD*V*******KISTYTTRYELSSTKSGWRITDGSKIVYK
MQMQALGHIDFGLRSPLLVPA******************TVSSASKWAHRLLADFQFTTA*********************PTNRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
****ALGHIDFGLRSPLLVPAPQPRTSS******************W*HRLLADFQFTT***************LTPPPPT***RHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLE*************************************************************************************************ITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNI************ASDI***********GQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQMQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADNSSLSSSSNTTVTLTPPPPTPTNRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDKAVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKIVYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query798 2.2.26 [Sep-21-2011]
Q9FIG9801 Protein ACCUMULATION AND yes no 0.972 0.968 0.607 0.0
Q8VY16819 Plastid division protein no no 0.467 0.455 0.266 7e-21
>sp|Q9FIG9|ARC6_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1 Back     alignment and function desciption
 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/812 (60%), Positives = 601/812 (74%), Gaps = 36/812 (4%)

Query: 3   MQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADN 62
           M+AL H+  GL SP  +    P T+  R S +   +TT+ SASKWA RLL+DF FT+  +
Sbjct: 1   MEALSHVGIGL-SPFQLCRLPPATTKLRRSHN--TSTTICSASKWADRLLSDFNFTSDSS 57

Query: 63  SSLSSSSNTTVTLTPPPPT--PTNRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPP 120
           SS  +++ TT TL  PPP+     RHV IPIDFYQ LGA+THFL DGIRRA+EAR+SKPP
Sbjct: 58  SSSFATATTTATLVSPPPSIDRPERHVPIPIDFYQVLGAQTHFLTDGIRRAFEARVSKPP 117

Query: 121 QYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVL 180
           Q+GFS DALISRRQILQAACETL+N  SRREYN+GL DD   T++T+VPWDKVPGAL VL
Sbjct: 118 QFGFSDDALISRRQILQAACETLSNPRSRREYNEGLLDDEEATVITDVPWDKVPGALCVL 177

Query: 181 QEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLE 240
           QE GETE+VLR+GE+LL+ERLPKSFKQDVVL MALA++D+SRDAMA +PPD+I G E +E
Sbjct: 178 QEGGETEIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVSRDAMALDPPDFITGYEFVE 237

Query: 241 RALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNI 300
            ALKLLQEEGASSLAPDL+AQIDETLEEI PR VLELLGLPL  +Y A+R  GL G+ NI
Sbjct: 238 EALKLLQEEGASSLAPDLRAQIDETLEEITPRYVLELLGLPLGDDYAAKRLNGLSGVRNI 297

Query: 301 LWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALV 360
           LW+VGGGGA+A+ GG TRE FMNEAFLRMT+AEQV LF ATP++IPAE+FE Y VALALV
Sbjct: 298 LWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDLFVATPSNIPAESFEVYEVALALV 357

Query: 361 AQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGK 420
           AQAF+GK+PHL+ DAD  F+ LQQ KV  +     +Y      E++F LERGLC+LL+GK
Sbjct: 358 AQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLIGK 417

Query: 421 LDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDT 480
           +DECR+WLGLDS+ S YRNPAIV+FVLENS   D++DLPGLCKLLETWLA VVFPRFRDT
Sbjct: 418 VDECRMWLGLDSEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFRDT 477

Query: 481 SDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQAL 540
            D +FKLGDYYDDP VL YLER+E    SPLAAAAA+ RIGA       +HVK+S +QAL
Sbjct: 478 KDKKFKLGDYYDDPMVLSYLERVEVVQGSPLAAAAAMARIGA-------EHVKASAMQAL 530

Query: 541 QKVFPLGQGDK-------------AVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDA 587
           QKVFP    D+             +V  V +    D  P V   E++   +N   F T+ 
Sbjct: 531 QKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRDGEPGVFIAEAVRPSEN---FETND 587

Query: 588 YGT------SSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQ 641
           Y        SS D+   E S+ D +K+ SVKI+ AGVAIGL++L   KY   ++ SS Q+
Sbjct: 588 YAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGVAIGLISLFSQKYF-LKSSSSFQR 646

Query: 642 KEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPE 701
           K++  +  SD+   G +  +   + LPRMDAR AE+IV KWQ IKS AFGPDH +  LPE
Sbjct: 647 KDMVSSMESDVATIGSVRADD-SEALPRMDARTAENIVSKWQKIKSLAFGPDHRIEMLPE 705

Query: 702 VLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDT 761
           VLDG+MLK+WTDRA+E AQLG  YDY+LL L++DSVT+S +G  A VEAT++ESA L+D 
Sbjct: 706 VLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDSVTVSADGTRALVEATLEESACLSDL 765

Query: 762 VHPENCDEKISTYTTRYELSSTKSGWRITDGS 793
           VHPEN    + TYTTRYE+  +KSGW+IT+GS
Sbjct: 766 VHPENNATDVRTYTTRYEVFWSKSGWKITEGS 797
Component of the plastid division machinery. Involved in the initiation of proplastid and plastid division (including chloroplasts, statoliths and leukoplasts). Promotes the assembly and/or stabilization of the plastid-dividing FtsZ ring, functioning as an antagonistic regulator of FtsZ dynamics against CDP1. Relays plastid division site position between stroma and outer surface via interactions with the stromal FtsZ ring and the outer membrane PDV2 that recruits cytoplasmic ARC5 ring. Required for plastid equatorial positioning of PDV2 and ARC5. May contribute to gravitropism in stems and hypocotyls. Seems to influence stromule (stroma-filled tubular extensions of the plastid envelope membrane) length and frequency.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VY16|CDP1_ARATH Plastid division protein CDP1, chloroplastic OS=Arabidopsis thaliana GN=CDP1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query798
224085790768 predicted protein [Populus trichocarpa] 0.949 0.986 0.681 0.0
225427387800 PREDICTED: protein ACCUMULATION AND REPL 0.981 0.978 0.675 0.0
147860071789 hypothetical protein VITISV_009566 [Viti 0.967 0.978 0.662 0.0
356562383793 PREDICTED: protein ACCUMULATION AND REPL 0.966 0.972 0.635 0.0
449470114786 PREDICTED: protein ACCUMULATION AND REPL 0.963 0.978 0.662 0.0
357438161796 hypothetical protein MTR_1g023310 [Medic 0.954 0.957 0.668 0.0
255538836781 heat shock protein binding protein, puta 0.961 0.982 0.641 0.0
356553409794 PREDICTED: protein ACCUMULATION AND REPL 0.972 0.977 0.640 0.0
365222906819 Hop-interacting protein THI044 [Solanum 0.983 0.958 0.636 0.0
33436339801 division protein [Arabidopsis thaliana] 0.972 0.968 0.603 0.0
>gi|224085790|ref|XP_002307697.1| predicted protein [Populus trichocarpa] gi|222857146|gb|EEE94693.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1047 bits (2708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/798 (68%), Positives = 626/798 (78%), Gaps = 40/798 (5%)

Query: 3   MQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADN 62
           M+AL H+  GL +P L P        K+PS  K++TT   SASKWA RLL+DFQF T+ +
Sbjct: 1   MEALRHVGIGLCTPKLFPP------FKKPS--KVSTTITCSASKWADRLLSDFQFFTSTD 52

Query: 63  SSLSS------SSNTTVTLTPPPPTPTNRHVSIPIDFYQALGAETHFLGDGIRRAYEARI 116
           +S S       SS+T     PPP +P  R+VSIP+ FYQ LGAETHFLGDGI+RAYEAR+
Sbjct: 53  TSSSDLLHHPLSSSTATLAPPPPLSPPERYVSIPLHFYQVLGAETHFLGDGIKRAYEARV 112

Query: 117 SKPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGA 176
           SKPPQYGFS DAL+SRRQILQAACETLA+ +SRR+YNQGL DD  DTI+T+VPWDKVPGA
Sbjct: 113 SKPPQYGFSQDALVSRRQILQAACETLADPASRRDYNQGLIDDETDTIVTQVPWDKVPGA 172

Query: 177 LLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGC 236
           L VLQEAGETEVVL+IGESLLRERLPKSFKQDVVLAM LAYVD+SRDAMA +PPD+I G 
Sbjct: 173 LCVLQEAGETEVVLQIGESLLRERLPKSFKQDVVLAMVLAYVDMSRDAMALDPPDFIRGR 232

Query: 237 EMLERALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHG 296
           E+LERALKLLQEEGASSLAPDLQAQIDETLEEI PR VLELL LPLS EY+ RREEGL G
Sbjct: 233 EVLERALKLLQEEGASSLAPDLQAQIDETLEEITPRSVLELLALPLSEEYRTRREEGLQG 292

Query: 297 MLNILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVA 356
           + N LWAVGGGGA  +AGGFTRE FMNEAFLRMT+AEQV LF  TP++IPA+ FE YGVA
Sbjct: 293 VRNTLWAVGGGGAAPVAGGFTREDFMNEAFLRMTAAEQVDLFVTTPSNIPAQNFEVYGVA 352

Query: 357 LALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSL 416
           LALVAQAF+GK+PHLI DADN+F  LQQ KV     L  ++  +E  +++F LERGLCSL
Sbjct: 353 LALVAQAFIGKKPHLITDADNLFGQLQQIKVTNQGSLVPVFGSMENRDIDFGLERGLCSL 412

Query: 417 LVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPR 476
           LVG+LDEC  W+GLDSD SPYRNP I DF++ENSK+ DD++LPGLCKLLETWL EVVFPR
Sbjct: 413 LVGELDECCKWMGLDSDNSPYRNPPIFDFIMENSKDDDDSNLPGLCKLLETWLMEVVFPR 472

Query: 477 FRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSST 536
           FRDT D  FKLGDYYDDPTVLRYLER EG G SPLAAAAAIVRIGA EATAV+DHVK+S 
Sbjct: 473 FRDTKDREFKLGDYYDDPTVLRYLERQEGGGRSPLAAAAAIVRIGA-EATAVIDHVKASA 531

Query: 537 IQALQKVFPLGQGDKAVKYVEH-GETYDPVPVVETEESLTSDQNNFAFTTDAYGTSSSDD 595
           IQALQKVFPLG  D   ++ E+ G   +P  +                         SD+
Sbjct: 532 IQALQKVFPLGHKDMGAEFHENDGINSNPEEIY------------------------SDE 567

Query: 596 IHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQKEIGLAKASDIIDA 655
           +  E+ IT+KIKD S+KIMCAGVAIGL+TL GLKY P R  S ++QKEIG A ASD I+ 
Sbjct: 568 VPEEELITEKIKDASIKIMCAGVAIGLLTLAGLKYFPPRTGSFIRQKEIGSAMASDTINL 627

Query: 656 GPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRA 715
              +DE++ +ELPRMDAR AEDIVRKWQNIKSQAFGPDH L KLPEVLD QMLK+WTDRA
Sbjct: 628 NSAVDEQISEELPRMDARFAEDIVRKWQNIKSQAFGPDHCLAKLPEVLDSQMLKIWTDRA 687

Query: 716 SEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYT 775
           +EIA LGW Y+Y LL+LTIDSVT+S +G  A VEAT+KES RLTD VHPEN    + TYT
Sbjct: 688 AEIAHLGWVYEYMLLDLTIDSVTVSVDGLSAVVEATLKESTRLTDEVHPENNASNVKTYT 747

Query: 776 TRYELSSTKSGWRITDGS 793
           TRYELS + SGW+IT+G+
Sbjct: 748 TRYELSCSNSGWKITEGA 765

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225427387|ref|XP_002262674.1| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Vitis vinifera] gi|296088380|emb|CBI37371.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147860071|emb|CAN78894.1| hypothetical protein VITISV_009566 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356562383|ref|XP_003549451.1| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449470114|ref|XP_004152763.1| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357438161|ref|XP_003589356.1| hypothetical protein MTR_1g023310 [Medicago truncatula] gi|355478404|gb|AES59607.1| hypothetical protein MTR_1g023310 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255538836|ref|XP_002510483.1| heat shock protein binding protein, putative [Ricinus communis] gi|223551184|gb|EEF52670.1| heat shock protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356553409|ref|XP_003545049.1| PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|365222906|gb|AEW69805.1| Hop-interacting protein THI044 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|33436339|gb|AAQ18645.1| division protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query798
TAIR|locus:2162341801 ARC6 "AT5G42480" [Arabidopsis 0.972 0.968 0.582 5e-234
TAIR|locus:2094143819 PARC6 "paralog of ARC6" [Arabi 0.482 0.470 0.254 2.7e-33
UNIPROTKB|Q55559714 sll0169 "Sll0169 protein" [Syn 0.844 0.943 0.237 5.9e-21
TAIR|locus:2162341 ARC6 "AT5G42480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2257 (799.6 bits), Expect = 5.0e-234, P = 5.0e-234
 Identities = 473/812 (58%), Positives = 574/812 (70%)

Query:     3 MQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADX 62
             M+AL H+  GL SP  +    P T+  R S +   +TT+ SASKWA RLL+DF FT+   
Sbjct:     1 MEALSHVGIGL-SPFQLCRLPPATTKLRRSHN--TSTTICSASKWADRLLSDFNFTSDSS 57

Query:    63 XXXXXXXXXXXXXXXX--XXXXXXRHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPP 120
                                     RHV IPIDFYQ LGA+THFL DGIRRA+EAR+SKPP
Sbjct:    58 SSSFATATTTATLVSPPPSIDRPERHVPIPIDFYQVLGAQTHFLTDGIRRAFEARVSKPP 117

Query:   121 QYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVL 180
             Q+GFS DALISRRQILQAACETL+N  SRREYN+GL DD   T++T+VPWDKVPGAL VL
Sbjct:   118 QFGFSDDALISRRQILQAACETLSNPRSRREYNEGLLDDEEATVITDVPWDKVPGALCVL 177

Query:   181 QEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLE 240
             QE GETE+VLR+GE+LL+ERLPKSFKQDVVL MALA++D+SRDAMA +PPD+I G E +E
Sbjct:   178 QEGGETEIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVSRDAMALDPPDFITGYEFVE 237

Query:   241 RALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNI 300
              ALKLLQEEGASSLAPDL+AQIDETLEEI PR VLELLGLPL  +Y A+R  GL G+ NI
Sbjct:   238 EALKLLQEEGASSLAPDLRAQIDETLEEITPRYVLELLGLPLGDDYAAKRLNGLSGVRNI 297

Query:   301 LWXXXXXXXXXXXXXFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALV 360
             LW              TRE FMNEAFLRMT+AEQV LF ATP++IPAE+FE Y VALALV
Sbjct:   298 LWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDLFVATPSNIPAESFEVYEVALALV 357

Query:   361 AQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGK 420
             AQAF+GK+PHL+ DAD  F+ LQQ KV  +     +Y      E++F LERGLC+LL+GK
Sbjct:   358 AQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLIGK 417

Query:   421 LDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDT 480
             +DECR+WLGLDS+ S YRNPAIV+FVLENS   D++DLPGLCKLLETWLA VVFPRFRDT
Sbjct:   418 VDECRMWLGLDSEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFRDT 477

Query:   481 SDIRFKLGDYYDDPTVLRYLERLEGNGSSPLXXXXXIVRIGATEATAVLDHVKSSTIQAL 540
              D +FKLGDYYDDP VL YLER+E    SPL     + RIGA       +HVK+S +QAL
Sbjct:   478 KDKKFKLGDYYDDPMVLSYLERVEVVQGSPLAAAAAMARIGA-------EHVKASAMQAL 530

Query:   541 QKVFPLGQGDK-AVKYVEHGETY---DPV---------PVVETEESLTSDQNNFAFTTDA 587
             QKVFP    D+ + +  +  ET    DPV         P V   E++   +N   F T+ 
Sbjct:   531 QKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRDGEPGVFIAEAVRPSEN---FETND 587

Query:   588 Y----GTSSS--DDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQ 641
             Y    G S S  D+   E S+ D +K+ SVKI+ AGVAIGL++L   KY   ++ SS Q+
Sbjct:   588 YAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGVAIGLISLFSQKYF-LKSSSSFQR 646

Query:   642 KEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPE 701
             K++  +  SD+   G +  +   + LPRMDAR AE+IV KWQ IKS AFGPDH +  LPE
Sbjct:   647 KDMVSSMESDVATIGSVRADD-SEALPRMDARTAENIVSKWQKIKSLAFGPDHRIEMLPE 705

Query:   702 VLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDT 761
             VLDG+MLK+WTDRA+E AQLG  YDY+LL L++DSVT+S +G  A VEAT++ESA L+D 
Sbjct:   706 VLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDSVTVSADGTRALVEATLEESACLSDL 765

Query:   762 VHPENCDEKISTYTTRYELSSTKSGWRITDGS 793
             VHPEN    + TYTTRYE+  +KSGW+IT+GS
Sbjct:   766 VHPENNATDVRTYTTRYEVFWSKSGWKITEGS 797
GO:0006457 "protein folding" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009658 "chloroplast organization" evidence=IMP
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0010020 "chloroplast fission" evidence=IMP
GO:0031357 "integral to chloroplast inner membrane" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043621 "protein self-association" evidence=IDA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2094143 PARC6 "paralog of ARC6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q55559 sll0169 "Sll0169 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FIG9ARC6_ARATHNo assigned EC number0.60710.97240.9687yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.1611.1
hypothetical protein (733 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00130190
SubName- Full=Putative uncharacterized protein; (339 aa)
  ••    0.543
gw1.X.3026.1
hypothetical protein (245 aa)
  ••    0.512
grail3.0045021002
hypothetical protein (231 aa)
  •     0.506
estExt_fgenesh4_pm.C_LG_IX0151
hypothetical protein (290 aa)
  •     0.506
estExt_Genewise1_v1.C_LG_VIII0078
hypothetical protein (95 aa)
  •     0.506
gw1.1884.1.1
annotation not avaliable (196 aa)
  •     0.505
eugene3.14640002
annotation not avaliable (58 aa)
  •     0.504
estExt_Genewise1_v1.C_LG_XIV2304
hypothetical protein (126 aa)
  •     0.504
estExt_Genewise1_v1.C_LG_XIII0363
hypothetical protein (158 aa)
  •     0.504
gw1.XIV.3174.1
hypothetical protein (202 aa)
  •     0.503

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query798
pfam13355117 pfam13355, DUF4101, Protein of unknown function (D 7e-36
>gnl|CDD|222068 pfam13355, DUF4101, Protein of unknown function (DUF4101) Back     alignment and domain information 
 Score =  131 bits (331), Expect = 7e-36
 Identities = 48/118 (40%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 675 AEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTI 734
           AE +V+ W + K+QA GP H +  L EVL G +L  W DRA  +   G  Y Y    L I
Sbjct: 1   AEQLVQTWLDAKAQALGPPHDIDSLSEVLTGPLLSRWRDRAQWLKANGSYYTYD-HQLKI 59

Query: 735 DSVTL-SQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 791
           +SV + SQ    A VEATV ESA+L D    +N      T   RY L      W+I D
Sbjct: 60  ESVEVFSQSPNRAEVEATVTESAQLYDNGQIDNETSYDDTLRVRYILVRDNGQWKIAD 117

This is a family of uncharacterized proteins, and is sometimes found in combination with pfam00226. Length = 117

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 798
PF13355117 DUF4101: Protein of unknown function (DUF4101) 100.0
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 99.7
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.61
KOG0691296 consensus Molecular chaperone (DnaJ superfamily) [ 99.55
PRK14288369 chaperone protein DnaJ; Provisional 99.54
PRK14279392 chaperone protein DnaJ; Provisional 99.49
PRK14296372 chaperone protein DnaJ; Provisional 99.47
PRK14286372 chaperone protein DnaJ; Provisional 99.45
PRK14295389 chaperone protein DnaJ; Provisional 99.45
PRK14277386 chaperone protein DnaJ; Provisional 99.44
PRK14298377 chaperone protein DnaJ; Provisional 99.44
PRK14285365 chaperone protein DnaJ; Provisional 99.44
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 99.43
PRK14282369 chaperone protein DnaJ; Provisional 99.42
PRK14278378 chaperone protein DnaJ; Provisional 99.42
PRK14284391 chaperone protein DnaJ; Provisional 99.41
PTZ00037421 DnaJ_C chaperone protein; Provisional 99.41
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 99.41
PRK14287371 chaperone protein DnaJ; Provisional 99.41
PRK14294366 chaperone protein DnaJ; Provisional 99.4
PRK14299291 chaperone protein DnaJ; Provisional 99.4
PRK14297380 chaperone protein DnaJ; Provisional 99.39
PRK14291382 chaperone protein DnaJ; Provisional 99.39
PRK14301373 chaperone protein DnaJ; Provisional 99.39
PRK14283378 chaperone protein DnaJ; Provisional 99.39
PRK14281397 chaperone protein DnaJ; Provisional 99.39
PRK14276380 chaperone protein DnaJ; Provisional 99.37
PRK10767371 chaperone protein DnaJ; Provisional 99.37
PRK14290365 chaperone protein DnaJ; Provisional 99.36
KOG0718546 consensus Molecular chaperone (DnaJ superfamily) [ 99.35
PRK14292371 chaperone protein DnaJ; Provisional 99.35
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.35
PRK14280376 chaperone protein DnaJ; Provisional 99.34
PTZ003411136 Ring-infected erythrocyte surface antigen; Provisi 99.34
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 99.31
PRK14289386 chaperone protein DnaJ; Provisional 99.31
PRK14293374 chaperone protein DnaJ; Provisional 99.31
KOG0716279 consensus Molecular chaperone (DnaJ superfamily) [ 99.31
KOG0717508 consensus Molecular chaperone (DnaJ superfamily) [ 99.3
PRK14300372 chaperone protein DnaJ; Provisional 99.3
PRK10266306 curved DNA-binding protein CbpA; Provisional 99.27
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.24
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.2
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 99.18
TIGR03835 871 termin_org_DnaJ terminal organelle assembly protei 99.1
KOG0719264 consensus Molecular chaperone (DnaJ superfamily) [ 99.08
PRK05014171 hscB co-chaperone HscB; Provisional 99.07
PRK03578176 hscB co-chaperone HscB; Provisional 99.05
PHA03102153 Small T antigen; Reviewed 99.04
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 99.03
KOG0720490 consensus Molecular chaperone (DnaJ superfamily) [ 98.99
PRK00294173 hscB co-chaperone HscB; Provisional 98.97
PRK01356166 hscB co-chaperone HscB; Provisional 98.86
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 98.83
KOG0722329 consensus Molecular chaperone (DnaJ superfamily) [ 98.8
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 98.77
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 98.75
PTZ00100116 DnaJ chaperone protein; Provisional 98.61
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 98.56
PHA02624647 large T antigen; Provisional 98.44
PRK01773173 hscB co-chaperone HscB; Provisional 98.31
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 98.2
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 98.08
COG5269379 ZUO1 Ribosome-associated chaperone zuotin [Transla 97.72
KOG0568342 consensus Molecular chaperone (DnaJ superfamily) [ 97.68
KOG1150250 consensus Predicted molecular chaperone (DnaJ supe 97.64
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 96.8
PF12870111 Lumazine_bd: Lumazine-binding domain; InterPro: IP 94.55
PRK13616 591 lipoprotein LpqB; Provisional 94.38
PF04280147 Tim44: Tim44-like domain; InterPro: IPR007379 Tim4 93.4
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 93.22
PRK13615 557 lipoprotein LpqB; Provisional 92.59
PRK13613 599 lipoprotein LpqB; Provisional 91.64
PF12883120 DUF3828: Protein of unknown function (DUF3828); In 90.73
PRK13614 573 lipoprotein LpqB; Provisional 89.8
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 89.02
PF13577127 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RF 87.51
KOG3192168 consensus Mitochondrial J-type chaperone [Posttran 86.58
PF05494170 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: 85.06
PF14534107 DUF4440: Domain of unknown function (DUF4440); PDB 84.8
TIGR03481198 HpnM hopanoid biosynthesis associated membrane pro 83.49
PF13474121 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE 83.14
KOG0431453 consensus Auxilin-like protein and related protein 83.13
PF1344662 RPT: A repeated domain in UCH-protein 81.73
>PF13355 DUF4101: Protein of unknown function (DUF4101) Back     alignment and domain information 
Probab=100.00  E-value=9.7e-37  Score=286.00  Aligned_cols=116  Identities=44%  Similarity=0.717  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCcccccchhhHHHHHHHHHHHHHcCceEEeecceeeEEEEEecC-CCceeEEEEEEE
Q 003752          675 AEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ-EGRHAWVEATVK  753 (798)
Q Consensus       675 Ae~lV~~Wq~aKa~AlGp~h~i~~L~eILtg~mL~~W~~~A~~l~~~~~y~~Y~l~~L~IdsV~~~~-~g~~A~VeA~V~  753 (798)
                      |++||++||++|++||||+|+++.|++||+|+||++|++++++++++||||+|+ |+++|++|+++. +|++|+|+|+|+
T Consensus         1 A~~lv~~Wl~~Ka~alg~~~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~y~~y~-~~~~I~sv~~~~~~~~ra~v~a~v~   79 (117)
T PF13355_consen    1 AEQLVQRWLSAKAQALGPPHDIDSLSEVLTGPLLSQWQDRAQWLKANGWYWEYD-HKLKIDSVEVFSDSPNRATVEATVT   79 (117)
T ss_pred             CHHHHHHHHHHHHHHhCCCcchhHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEe-eeeEEEEEEEcCCCCCeEEEEEEEE
Confidence            789999999999999999999999999999999999999999999999999999 999999999887 699999999999


Q ss_pred             EEEeeeccCcCCCCCCcccceEEEEEEEEcCCceEEec
Q 003752          754 ESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD  791 (798)
Q Consensus       754 E~a~Ly~~g~~~~~~Sy~~ty~vRY~L~r~~g~WkI~~  791 (798)
                      |+++||++|++.+++||++||+|||+|+|++|+|||+|
T Consensus        80 E~~~l~~~g~~~~~~s~~~~~~vrY~L~r~~~~WkI~d  117 (117)
T PF13355_consen   80 ESAQLYDNGQPDNNPSYDSTLRVRYELVRQNGQWKITD  117 (117)
T ss_pred             EEEEEEeCCccccCCCCCCcEEEEEEEEEcCCEEEecC
Confidence            99999999999998899999999999999999999986

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13615 lipoprotein LpqB; Provisional Back     alignment and domain information
>PRK13613 lipoprotein LpqB; Provisional Back     alignment and domain information
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function Back     alignment and domain information
>PRK13614 lipoprotein LpqB; Provisional Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B Back     alignment and domain information
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation [] Back     alignment and domain information
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A Back     alignment and domain information
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM Back     alignment and domain information
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B Back     alignment and domain information
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] Back     alignment and domain information
>PF13446 RPT: A repeated domain in UCH-protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query798
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.8 bits (149), Expect = 7e-10
 Identities = 65/452 (14%), Positives = 121/452 (26%), Gaps = 165/452 (36%)

Query: 159 DHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLR--ERLPKSFKQDVV------ 210
           D   +IL++   D +      +         LR+  +LL   E + + F ++V+      
Sbjct: 40  DMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 211 LAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEEIN 270
           L   +          +     YI   E  +R          + +         +   ++ 
Sbjct: 94  LMSPIKTEQRQP---SMMTRMYI---EQRDRL------YNDNQVFAKYNVSRLQPYLKLR 141

Query: 271 PRCVLELLGLPLSGEYQARREEG--LHGMLNILWAVGGGGATAIAGGFTRESFMNEAFLR 328
            + +LEL           R  +   + G+        G G T +A               
Sbjct: 142 -QALLEL-----------RPAKNVLIDGV-------LGSGKTWVA--------------- 167

Query: 329 MTSAEQVKLFSATPNSIPAETFEAYGVALALVAQAF---VGKQ--PH-LIADADNMFKHL 382
                              +   +Y V   +  + F   +     P  ++     +   +
Sbjct: 168 ------------------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 383 QQNKVPTLRDLGSIYIPLEKHEMEFALERGLC------SLLVGKLDECRLWLGLDSDKSP 436
             N   T R   S  I L  H ++  L R L        LLV  L    +          
Sbjct: 210 DPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN--VQ--------- 254

Query: 437 YRNPAIVD-FVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDYYDDPT 495
             N    + F           +L   CK+L T          R      F         +
Sbjct: 255 --NAKAWNAF-----------NLS--CKILLT---------TRFKQVTDFLSAATTTHIS 290

Query: 496 V----------------LRYLE------RLEGNGSSPLAAA--AAIVRIGATEATAVLDH 531
           +                L+YL+        E   ++P   +  A  +R    +  A  D+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR----DGLATWDN 346

Query: 532 VKSSTIQALQKVFPLGQGDKAVKYVEHGETYD 563
            K      L  +      + ++  +E  E   
Sbjct: 347 WKHVNCDKLTTII-----ESSLNVLEPAEYRK 373
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query798
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.57
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.57
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 99.56
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.56
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.55
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.55
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.55
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 99.55
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.53
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 99.51
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.51
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.5
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 99.5
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 99.5
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 99.48
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 99.46
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.46
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.4
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 99.38
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 99.37
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.32
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 99.27
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 99.26
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 99.26
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 99.23
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 99.22
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 99.2
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.18
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 99.16
2guz_A71 Mitochondrial import inner membrane translocase su 99.12
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 99.11
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 99.08
3apo_A780 DNAJ homolog subfamily C member 10; PDI family, th 99.08
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 98.49
2guz_B65 Mitochondrial import inner membrane translocase su 98.03
4gb5_A159 Uncharacterized protein; structural genomics, PSI- 90.97
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 87.5
3k7c_A114 Putative NTF2-like transpeptidase; structural geno 86.18
3soy_A145 NTF2-like superfamily protein; structural genomics 84.81
2cw9_A194 Translocase of inner mitochondrial membrane; struc 83.52
3b8l_A163 Uncharacterized protein; putative aromatic ring hy 83.45
3a76_A176 Gamma-hexachlorocyclohexane dehydrochlorinase; bar 81.63
2qgu_A211 Probable signal peptide protein; NESG, RSR89, Q8XV 80.47
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=99.57  E-value=1.8e-15  Score=130.65  Aligned_cols=69  Identities=23%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhcccC
Q 003752           90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLAD  158 (798)
Q Consensus        90 plDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~~  158 (798)
                      ..|||+||||+++|+.++||+|||+++++ |||++.+.+.+.++|+.|++||++|+||.+|..||..+..
T Consensus         6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A            6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            46999999999999999999999999987 7999876556778999999999999999999999997643
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3k7c_A Putative NTF2-like transpeptidase; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: PGE; 2.00A {Campylobacter jejuni} Back     alignment and structure
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp} Back     alignment and structure
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Back     alignment and structure
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28 Back     alignment and structure
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis} Back     alignment and structure
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query798
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.67
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.59
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.57
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.46
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 99.36
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 99.26
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 99.15
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.09
d3b8la1144 Uncharacterized protein Saro3538 {Novosphingobium 90.17
d3cnxa1153 Uncharacterized protein SAV4671 {Streptomyces aver 89.27
d2rfra1153 Uncharacterized protein Saro3722 {Novosphingobium 88.17
d1idpa_147 Scytalone dehydratase {Fungus (Magnaporthe grisea) 86.56
d2ux0a1135 Association domain of calcium/calmodulin-dependent 86.48
d2r4ia1122 Uncharacterized protein CHU142 {Cytophaga hutchins 84.64
d2rgqa1133 Uncharacterized protein NpunR3134 {Nostoc punctifo 81.79
d3ebya1157 Putative hydroxylase subunit Saro3860 {Novosphingo 80.73
d3ejva1159 Uncharacterized protein Saro2766 {Novosphingobium 80.49
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.3e-17  Score=140.43  Aligned_cols=67  Identities=24%  Similarity=0.330  Sum_probs=62.1

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhccChhchHHHhhccc
Q 003752           91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA  157 (798)
Q Consensus        91 lDyY~ILGV~~~As~eeIKkAYRkla~~-~PDk~~s~~a~~~Rf~~L~eAYevLsDp~~R~~YD~~l~  157 (798)
                      .|||+||||+++||.+|||+|||+++++ |||++.+++..+.+|+.|++||+||+||.+|..||..+.
T Consensus         3 ~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   70 (75)
T d1xbla_           3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH   70 (75)
T ss_dssp             CCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTT
T ss_pred             CCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Confidence            5999999999999999999999999987 799987777778899999999999999999999998754
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3b8la1 d.17.4.28 (A:1-144) Uncharacterized protein Saro3538 {Novosphingobium aromaticivorans [TaxId: 48935]} Back     information, alignment and structure
>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]} Back     information, alignment and structure
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]} Back     information, alignment and structure
>d1idpa_ d.17.4.1 (A:) Scytalone dehydratase {Fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]} Back     information, alignment and structure
>d2rgqa1 d.17.4.25 (A:1-133) Uncharacterized protein NpunR3134 {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d3ebya1 d.17.4.4 (A:6-162) Putative hydroxylase subunit Saro3860 {Novosphingobium aromaticivorans [TaxId: 48935]} Back     information, alignment and structure
>d3ejva1 d.17.4.28 (A:2-160) Uncharacterized protein Saro2766 {Novosphingobium aromaticivorans [TaxId: 48935]} Back     information, alignment and structure