Citrus Sinensis ID: 003762
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 797 | 2.2.26 [Sep-21-2011] | |||||||
| Q42572 | 790 | DNA ligase 1 OS=Arabidops | yes | no | 0.929 | 0.937 | 0.675 | 0.0 | |
| Q869E1 | 1192 | DNA ligase 1 OS=Dictyoste | yes | no | 0.740 | 0.494 | 0.499 | 1e-179 | |
| P51892 | 1070 | DNA ligase 1 OS=Xenopus l | N/A | no | 0.774 | 0.576 | 0.488 | 1e-179 | |
| P18858 | 919 | DNA ligase 1 OS=Homo sapi | yes | no | 0.737 | 0.639 | 0.488 | 1e-176 | |
| P37913 | 916 | DNA ligase 1 OS=Mus muscu | yes | no | 0.730 | 0.635 | 0.483 | 1e-174 | |
| Q9JHY8 | 918 | DNA ligase 1 OS=Rattus no | yes | no | 0.730 | 0.633 | 0.471 | 1e-170 | |
| Q9W1H4 | 747 | DNA ligase 1 OS=Drosophil | yes | no | 0.844 | 0.900 | 0.432 | 1e-168 | |
| P12000 | 768 | DNA ligase 1 OS=Schizosac | yes | no | 0.710 | 0.736 | 0.490 | 1e-162 | |
| Q27474 | 773 | DNA ligase 1 OS=Caenorhab | yes | no | 0.723 | 0.746 | 0.462 | 1e-151 | |
| P04819 | 755 | DNA ligase 1 OS=Saccharom | yes | no | 0.717 | 0.757 | 0.445 | 1e-150 |
| >sp|Q42572|DNLI1_ARATH DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/770 (67%), Positives = 624/770 (81%), Gaps = 29/770 (3%)
Query: 2 LLTLRSCYPLRLTPLSGNVVKPTSFSR--LSFSSH--HLFQKPKPLSSSLNPRRKMSSSA 57
+L +RS LR P + + FS +SFS HL LSS R MSSS
Sbjct: 1 MLAIRSSNYLRCIPSLCTKTQISQFSSVLISFSRQISHL-----RLSSC---HRAMSSSR 52
Query: 58 PNAFQVLMS---AAAKKKPSPQPNSSSSSSSPKKRRTLDTQTPKTTNSVVGEKIQEVAEE 114
P+AF LMS AAAKKK P +++ S SP KR+ +TQ ++V E E
Sbjct: 53 PSAFDALMSNARAAAKKK---TPQTTNLSRSPNKRKIGETQDANLGKTIVSEGTLPKTE- 108
Query: 115 PSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLLKKKA 174
DL++P+S+ + D+ ++ + KK K K E+KS I LLKKK
Sbjct: 109 ---DLLEPVSDSANPRSDTSSIAEDSKTGAKKAKT-------LSKTDEMKSKIGLLKKKP 158
Query: 175 GEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPV 234
+FDP+ ++CWEKGERVPF+F++L FD+ISNE+GRI+ITDI+CNMLRTV+ TTPEDLV
Sbjct: 159 NDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNMLRTVIATTPEDLVAT 218
Query: 235 VYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQ 294
VYL+AN+IAPAHEG+ELGIG+++IIKA++EA GRTE HVKKQ E+GDLGLVAK SRS+Q
Sbjct: 219 VYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGSRSTQ 278
Query: 295 SMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKL 354
+MM KP+PLT+ KVFDTFR IAKE+GKDS EKKKNR+KALLVA TDCEP YL RLLQ+KL
Sbjct: 279 TMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTRLLQAKL 338
Query: 355 RIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLT 414
R+G + QT+LAALGQAAVYNE+HSKPPPN +SPLEEAAKIVKQVF+VLPVY+ IVPALL+
Sbjct: 339 RLGFSGQTVLAALGQAAVYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLS 398
Query: 415 DGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDG 474
GVWNL TC+FT G+PIGPMLAKPTKGV+EI+NKFQD+ FTCEYKYDGERAQIH++EDG
Sbjct: 399 GGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMEDG 458
Query: 475 SVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRA 534
+ EIYSRNAERNTGK+PDV LA+SRLKKPSV+SF+LDCE+VA+DREK+KILPFQ LSTRA
Sbjct: 459 TFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRA 518
Query: 535 RKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSI 594
RKNV+++DIKV VCI+AFD+LY NGQ L+QE L++RRE LY+SFEE+PG+FQFAT +TS
Sbjct: 519 RKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFATAVTSN 578
Query: 595 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPI 654
D+DEIQKFLDA+VD CEGLIIKT+D DATYEP+KRS NWLKLKKDY++SIGDS+DLVPI
Sbjct: 579 DIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPI 638
Query: 655 AAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRP 714
AAFHGRGKRTGVYGAFLLACYD + EEFQSICKIGTGFS+AML+ERSSSLRS+VI P+
Sbjct: 639 AAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQ 698
Query: 715 YYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRF 764
YYR D+++PDVWFEPTEVWEVKAADLTISPVHRAA G+VDPDK ++RF
Sbjct: 699 YYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRF 748
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Essential protein. DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Involved in repair of both single strand breaks (SSBs) and double strand breaks (DSBs). Required in the endosperm for embryogenesis, probably to repair DNA-breaks generated by DME. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 5EC: .EC: 1EC: .EC: 1 |
| >sp|Q869E1|DNLI1_DICDI DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P51892|DNLI1_XENLA DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P18858|DNLI1_HUMAN DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P37913|DNLI1_MOUSE DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9JHY8|DNLI1_RAT DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9W1H4|DNLI1_DROME DNA ligase 1 OS=Drosophila melanogaster GN=DNA-ligI PE=1 SV=2 | Back alignment and function description |
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| >sp|P12000|DNLI1_SCHPO DNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc17 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q27474|DNLI1_CAEEL DNA ligase 1 OS=Caenorhabditis elegans GN=lig-1 PE=3 SV=2 | Back alignment and function description |
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| >sp|P04819|DNLI1_YEAST DNA ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC9 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 797 | ||||||
| 449456160 | 801 | PREDICTED: DNA ligase 1-like [Cucumis sa | 0.939 | 0.935 | 0.696 | 0.0 | |
| 224106842 | 684 | predicted protein [Populus trichocarpa] | 0.795 | 0.926 | 0.807 | 0.0 | |
| 449496284 | 801 | PREDICTED: LOW QUALITY PROTEIN: DNA liga | 0.938 | 0.933 | 0.698 | 0.0 | |
| 297849114 | 793 | ATLIG1 [Arabidopsis lyrata subsp. lyrata | 0.933 | 0.938 | 0.687 | 0.0 | |
| 30680522 | 790 | DNA ligase 1 [Arabidopsis thaliana] gi|2 | 0.929 | 0.937 | 0.675 | 0.0 | |
| 1359495 | 790 | DNA ligase [Arabidopsis thaliana] | 0.929 | 0.937 | 0.674 | 0.0 | |
| 225436462 | 723 | PREDICTED: DNA ligase 1 [Vitis vinifera] | 0.855 | 0.943 | 0.730 | 0.0 | |
| 356542672 | 776 | PREDICTED: DNA ligase 1-like [Glycine ma | 0.781 | 0.802 | 0.784 | 0.0 | |
| 84453228 | 682 | putative DNA ligase [Trifolium pratense] | 0.781 | 0.913 | 0.770 | 0.0 | |
| 356541453 | 701 | PREDICTED: DNA ligase 1-like [Glycine ma | 0.810 | 0.921 | 0.714 | 0.0 |
| >gi|449456160|ref|XP_004145818.1| PREDICTED: DNA ligase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 1083 bits (2800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/785 (69%), Positives = 636/785 (81%), Gaps = 36/785 (4%)
Query: 2 LLTLRSCYPLRLTPLSGNVVKPTSFSRLSFSSHHLFQKPKPLSSS-LNPRRKMSSSAPNA 60
+L+LRSC+ LR P++ + F +L FS++ F KP+S + ++P SS P+A
Sbjct: 1 MLSLRSCFYLR--PIT---LPHPQFKKLIFSNNSSFSF-KPISHNFVSPM----SSRPSA 50
Query: 61 FQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDT-QTPKTTNSVVGEKIQEVAEEPSNDL 119
F LMS A NSS PKKR+ LD+ +P +S + + E
Sbjct: 51 FDALMSGARAAAKKKPANSS-----PKKRKALDSLDSPLKPSSFLALESTPPVESQCGSS 105
Query: 120 VKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAK--------------EKIAELKS 165
V + + +D + K R+ N V AK E+ A+LKS
Sbjct: 106 VSNLDDHGGTHLDGVDLGET-----KLRQDNDGGVGAKIGPFGNKTCASSVQERTAKLKS 160
Query: 166 NIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVME 225
+ LKKKA +F+ K VACW++GERVPF+FL L FDMIS E+ RI ITDIVCNMLRTVM+
Sbjct: 161 STAELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMD 220
Query: 226 TTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGL 285
TTP+DLV VYL ANKIAPAHEGLELGIGDASIIKAL+EA GRTE+ VKKQY+E+GDLGL
Sbjct: 221 TTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGL 280
Query: 286 VAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQY 345
VAKASRSSQSMMRKPD LT+TKVFDTFRLIAKE+GKDSQEKKKN IK+LLVAATDCEP Y
Sbjct: 281 VAKASRSSQSMMRKPDALTVTKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLY 340
Query: 346 LIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVY 405
LIRLLQ+KLRIGLAEQTLLAALGQAAVY+E+HS PPPNIQSPLEEA+KIVKQV+S+LPVY
Sbjct: 341 LIRLLQTKLRIGLAEQTLLAALGQAAVYSEKHSTPPPNIQSPLEEASKIVKQVYSILPVY 400
Query: 406 EKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGER 465
+K+VPALL+ GVWNLS TC+FTPGIPIGPMLAKPTKGVSEI+NKFQ +EFTCEYKYDGER
Sbjct: 401 DKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGER 460
Query: 466 AQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKIL 525
AQIHY+EDGSVEIYSRNAERNTGKFPDVVL VSR+KKPSVRSF+LDCE+VAYDR KQKIL
Sbjct: 461 AQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKIL 520
Query: 526 PFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 585
PFQ LSTRARKNV++SDIKV+VC++AFD+LY +GQPL+Q +L VRRE LY+SF EE G+F
Sbjct: 521 PFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYNSFIEESGYF 580
Query: 586 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESI 645
QFAT + + DL+EIQKFLDA+VD SCEGLIIKT++RDATYEPSKRS NWLKLKKDYI+SI
Sbjct: 581 QFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSI 640
Query: 646 GDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLR 705
GDSLDLVPIAAFHGRGKRTGVYGAFLLACYD++NEEFQSICKIGTGFSEAMLEERS+SLR
Sbjct: 641 GDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLR 700
Query: 706 SKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRFS 765
SKVIP+P+ YYR+ DTI+PDVWFEPTEVWEVKAADLTISPVHRA +G+VD DK ++RF
Sbjct: 701 SKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFP 760
Query: 766 VLAHL 770
L +
Sbjct: 761 RLVRV 765
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106842|ref|XP_002314303.1| predicted protein [Populus trichocarpa] gi|222850711|gb|EEE88258.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449496284|ref|XP_004160093.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297849114|ref|XP_002892438.1| ATLIG1 [Arabidopsis lyrata subsp. lyrata] gi|297338280|gb|EFH68697.1| ATLIG1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30680522|ref|NP_172293.2| DNA ligase 1 [Arabidopsis thaliana] gi|27735188|sp|Q42572.2|DNLI1_ARATH RecName: Full=DNA ligase 1; Short=AtLIG1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor gi|26449576|dbj|BAC41914.1| putative DNA ligase [Arabidopsis thaliana] gi|29029040|gb|AAO64899.1| At1g08130 [Arabidopsis thaliana] gi|332190130|gb|AEE28251.1| DNA ligase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|1359495|emb|CAA66599.1| DNA ligase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|225436462|ref|XP_002272683.1| PREDICTED: DNA ligase 1 [Vitis vinifera] gi|297734904|emb|CBI17138.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356542672|ref|XP_003539790.1| PREDICTED: DNA ligase 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|84453228|dbj|BAE71211.1| putative DNA ligase [Trifolium pratense] | Back alignment and taxonomy information |
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| >gi|356541453|ref|XP_003539190.1| PREDICTED: DNA ligase 1-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 797 | ||||||
| TAIR|locus:2199953 | 790 | LIG1 "DNA ligase 1" [Arabidops | 0.882 | 0.889 | 0.690 | 5.5e-267 | |
| UNIPROTKB|Q0IWT4 | 828 | Os10g0489200 "DNA ligase" [Ory | 0.726 | 0.699 | 0.711 | 1.3e-224 | |
| TAIR|locus:2010207 | 657 | AT1G49250 [Arabidopsis thalian | 0.706 | 0.856 | 0.676 | 9.2e-213 | |
| DICTYBASE|DDB_G0274493 | 1192 | lig1 "DNA ligase I" [Dictyoste | 0.819 | 0.547 | 0.476 | 1.9e-166 | |
| UNIPROTKB|B4DTU4 | 888 | LIG1 "DNA ligase" [Homo sapien | 0.835 | 0.75 | 0.456 | 1.6e-160 | |
| UNIPROTKB|P18858 | 919 | LIG1 "DNA ligase 1" [Homo sapi | 0.835 | 0.724 | 0.456 | 6.8e-160 | |
| UNIPROTKB|F1M624 | 912 | Lig1 "DNA ligase" [Rattus norv | 0.737 | 0.644 | 0.48 | 2.6e-159 | |
| UNIPROTKB|F1M8E6 | 913 | Lig1 "DNA ligase" [Rattus norv | 0.737 | 0.644 | 0.48 | 2.6e-159 | |
| UNIPROTKB|F1RL99 | 915 | LIG1 "DNA ligase" [Sus scrofa | 0.784 | 0.683 | 0.469 | 2.9e-159 | |
| UNIPROTKB|A8JH25 | 813 | LIG1 "DNA ligase" [Chlamydomon | 0.740 | 0.725 | 0.510 | 5.3e-159 |
| TAIR|locus:2199953 LIG1 "DNA ligase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2568 (909.0 bits), Expect = 5.5e-267, P = 5.5e-267
Identities = 493/714 (69%), Positives = 591/714 (82%)
Query: 51 RKMSSSAPNAFQVLMXXXXXXXXXXXXXXXXXXXXXXXRRTLDTQTPKTTNSVVGEKIQE 110
R MSSS P+AF LM R+ +TQ ++V E
Sbjct: 46 RAMSSSRPSAFDALMSNARAAAKKKTPQTTNLSRSPNKRKIGETQDANLGKTIVSEGTLP 105
Query: 111 VAEEPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLL 170
E DL++P+S+ + D+ ++ + KK K ++S K E+KS I LL
Sbjct: 106 KTE----DLLEPVSDSANPRSDTSSIAEDSKTGAKKAK----TLS---KTDEMKSKIGLL 154
Query: 171 KKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPED 230
KKK +FDP+ ++CWEKGERVPF+F++L FD+ISNE+GRI+ITDI+CNMLRTV+ TTPED
Sbjct: 155 KKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNMLRTVIATTPED 214
Query: 231 LVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKAS 290
LV VYL+AN+IAPAHEG+ELGIG+++IIKA++EA GRTE HVKKQ E+GDLGLVAK S
Sbjct: 215 LVATVYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGS 274
Query: 291 RSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLL 350
RS+Q+MM KP+PLT+ KVFDTFR IAKE+GKDS EKKKNR+KALLVA TDCEP YL RLL
Sbjct: 275 RSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTRLL 334
Query: 351 QSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVP 410
Q+KLR+G + QT+LAALGQAAVYNE+HSKPPPN +SPLEEAAKIVKQVF+VLPVY+ IVP
Sbjct: 335 QAKLRLGFSGQTVLAALGQAAVYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVP 394
Query: 411 ALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHY 470
ALL+ GVWNL TC+FT G+PIGPMLAKPTKGV+EI+NKFQD+ FTCEYKYDGERAQIH+
Sbjct: 395 ALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHF 454
Query: 471 LEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTL 530
+EDG+ EIYSRNAERNTGK+PDV LA+SRLKKPSV+SF+LDCE+VA+DREK+KILPFQ L
Sbjct: 455 MEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQIL 514
Query: 531 STRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590
STRARKNV+++DIKV VCI+AFD+LY NGQ L+QE L++RRE LY+SFEE+PG+FQFAT
Sbjct: 515 STRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFATA 574
Query: 591 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLD 650
+TS D+DEIQKFLDA+VD CEGLIIKT+D DATYEP+KRS NWLKLKKDY++SIGDS+D
Sbjct: 575 VTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVD 634
Query: 651 LVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP 710
LVPIAAFHGRGKRTGVYGAFLLACYD + EEFQSICKIGTGFS+AML+ERSSSLRS+VI
Sbjct: 635 LVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIA 694
Query: 711 KPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRF 764
P+ YYR D+++PDVWFEPTEVWEVKAADLTISPVHRAA G+VDPDK ++RF
Sbjct: 695 TPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRF 748
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| UNIPROTKB|Q0IWT4 Os10g0489200 "DNA ligase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| TAIR|locus:2010207 AT1G49250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0274493 lig1 "DNA ligase I" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4DTU4 LIG1 "DNA ligase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P18858 LIG1 "DNA ligase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1M624 Lig1 "DNA ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1M8E6 Lig1 "DNA ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RL99 LIG1 "DNA ligase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A8JH25 LIG1 "DNA ligase" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9W1H4 | DNLI1_DROME | 6, ., 5, ., 1, ., 1 | 0.4328 | 0.8444 | 0.9009 | yes | no |
| Q42572 | DNLI1_ARATH | 6, ., 5, ., 1, ., 1 | 0.6753 | 0.9297 | 0.9379 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.5.1.1 | 0.991 |
| 3rd Layer | 6.5.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
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 | gw1.IX.5004.1 | hypothetical protein (664 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | gw1.V.2541.1 | • | • | • | 0.937 | ||||||
 | estExt_Genewise1_v1.C_LG_I1046 | • | • | • | • | 0.915 | |||||
 | estExt_Genewise1_v1.C_LG_IX3930 | • | • | • | • | 0.906 | |||||
 | gw1.XIII.413.1 | • | • | • | 0.888 | ||||||
 | estExt_fgenesh4_pg.C_LG_XIX0457 | • | • | • | 0.832 | ||||||
 | estExt_fgenesh4_pg.C_LG_III1005 | • | • | • | 0.807 | ||||||
 | gw1.I.2892.1 | • | • | 0.797 | |||||||
 | estExt_fgenesh4_pg.C_LG_II0728 | • | • | • | 0.778 | ||||||
 | grail3.0002016201 | • | • | • | 0.772 | ||||||
 | eugene3.00660007 | • | • | 0.753 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 797 | |||
| PLN03113 | 744 | PLN03113, PLN03113, DNA ligase 1; Provisional | 0.0 | |
| TIGR00574 | 514 | TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1 | 1e-152 | |
| PRK01109 | 590 | PRK01109, PRK01109, ATP-dependent DNA ligase; Prov | 1e-141 | |
| cd07900 | 219 | cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation | 1e-138 | |
| COG1793 | 444 | COG1793, CDC9, ATP-dependent DNA ligase [DNA repli | 3e-85 | |
| pfam01068 | 195 | pfam01068, DNA_ligase_A_M, ATP dependent DNA ligas | 3e-67 | |
| cd07969 | 144 | cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oli | 3e-66 | |
| pfam04675 | 177 | pfam04675, DNA_ligase_A_N, DNA ligase N terminus | 3e-58 | |
| cd07898 | 201 | cd07898, Adenylation_DNA_ligase, Adenylation domai | 3e-54 | |
| cd07901 | 207 | cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenyla | 4e-51 | |
| cd07903 | 225 | cd07903, Adenylation_DNA_ligase_IV, Adenylation do | 1e-44 | |
| PRK03180 | 508 | PRK03180, ligB, ATP-dependent DNA ligase; Reviewed | 2e-40 | |
| cd07906 | 190 | cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenyla | 4e-36 | |
| cd07902 | 213 | cd07902, Adenylation_DNA_ligase_III, Adenylation d | 2e-35 | |
| cd07893 | 129 | cd07893, OBF_DNA_ligase, The Oligonucleotide/oligo | 1e-34 | |
| TIGR02779 | 298 | TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, l | 2e-30 | |
| PRK09632 | 764 | PRK09632, PRK09632, ATP-dependent DNA ligase; Revi | 1e-24 | |
| PRK09247 | 539 | PRK09247, PRK09247, ATP-dependent DNA ligase; Vali | 5e-24 | |
| cd07897 | 207 | cd07897, Adenylation_DNA_ligase_Bac1, Adenylation | 7e-23 | |
| pfam04679 | 95 | pfam04679, DNA_ligase_A_C, ATP dependent DNA ligas | 3e-22 | |
| TIGR04120 | 526 | TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent | 6e-21 | |
| cd06846 | 182 | cd06846, Adenylation_DNA_ligase_like, Adenylation | 5e-20 | |
| cd07905 | 194 | cd07905, Adenylation_DNA_ligase_LigC, Adenylation | 2e-19 | |
| PRK05972 | 860 | PRK05972, ligD, ATP-dependent DNA ligase; Reviewed | 1e-18 | |
| cd08040 | 108 | cd08040, OBF_DNA_ligase_family, The Oligonucleotid | 1e-17 | |
| cd07968 | 140 | cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/ol | 4e-15 | |
| TIGR02776 | 552 | TIGR02776, NHEJ_ligase_prk, DNA ligase D | 5e-15 | |
| cd08039 | 235 | cd08039, Adenylation_DNA_ligase_Fungal, Adenylatio | 7e-15 | |
| cd07972 | 122 | cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleo | 2e-14 | |
| PRK08224 | 350 | PRK08224, ligC, ATP-dependent DNA ligase; Reviewed | 2e-13 | |
| cd07967 | 139 | cd07967, OBF_DNA_ligase_III, The Oligonucleotide/o | 1e-11 | |
| PRK07636 | 275 | PRK07636, ligB, ATP-dependent DNA ligase; Reviewed | 6e-11 | |
| PRK09633 | 610 | PRK09633, ligD, ATP-dependent DNA ligase; Reviewed | 2e-09 | |
| PRK09125 | 282 | PRK09125, PRK09125, DNA ligase; Provisional | 1e-07 | |
| cd07896 | 174 | cd07896, Adenylation_kDNA_ligase_like, Adenylation | 3e-06 | |
| cd07971 | 115 | cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/ | 6e-05 | |
| PHA00454 | 315 | PHA00454, PHA00454, ATP-dependent DNA ligase | 1e-04 |
| >gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional | Back alignment and domain information |
|---|
Score = 1216 bits (3148), Expect = 0.0
Identities = 546/717 (76%), Positives = 615/717 (85%), Gaps = 15/717 (2%)
Query: 54 SSSAPNAFQVLMSAAAKKKPSPQPNSSSSSSSPKKRRTLDTQTPKTTNSVVGEKIQEVAE 113
SS P+AF LMS A QP + S SSSPKKR+ +TQ + V E E
Sbjct: 1 MSSRPSAFDALMSNARAAAKKKQPQTQSQSSSPKKRKIGETQDANLGKTNVSEGTLPKTE 60
Query: 114 ---EPSNDLVKPISNQIDNPIDSEKESQPTPPSPKKRKVNVNSVSAKEKIAELKSNIVLL 170
EP +D KP S+ DS+ ++ K +K E+KS I LL
Sbjct: 61 DTIEPKSDSAKPRSSTSSIAEDSKTGTKKAQTLSKPKKD------------EMKSKIGLL 108
Query: 171 KKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPED 230
KKK +FDP+ VA WEKGERVPF+F++L FD+ISNETGRI+ITDIVCNMLRTVM TTPED
Sbjct: 109 KKKPNDFDPEKVAYWEKGERVPFLFVALAFDLISNETGRIVITDIVCNMLRTVMATTPED 168
Query: 231 LVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKAS 290
LV VVYL AN+IAPAHEG+ELGIG+A+IIKALAEA GRTE VKKQY+E+GDLGLVAKAS
Sbjct: 169 LVAVVYLLANRIAPAHEGVELGIGEATIIKALAEAFGRTEKQVKKQYKELGDLGLVAKAS 228
Query: 291 RSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLL 350
RSSQSMMRKP+PLT+ KVF+TF+ IAKE+GKDSQEKKKNRIKALLVAATDCEP YLIRLL
Sbjct: 229 RSSQSMMRKPEPLTVVKVFNTFQQIAKESGKDSQEKKKNRIKALLVAATDCEPLYLIRLL 288
Query: 351 QSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVP 410
Q+KLRIGLA QTLLAALGQAAVYNE+HS PPPNIQSPLEEAAKIVKQV+SVLPVY+KIVP
Sbjct: 289 QTKLRIGLAGQTLLAALGQAAVYNEEHSTPPPNIQSPLEEAAKIVKQVYSVLPVYDKIVP 348
Query: 411 ALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHY 470
ALL+ GVWNL TCSFTPG+P+GPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIH+
Sbjct: 349 ALLSGGVWNLPKTCSFTPGVPVGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHF 408
Query: 471 LEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTL 530
LEDGSVEIYSRNAERNTGK+PDVV+A+SRLKKPSV+SF+LDCE+VAYDREK+KILPFQ L
Sbjct: 409 LEDGSVEIYSRNAERNTGKYPDVVVAISRLKKPSVKSFILDCELVAYDREKKKILPFQIL 468
Query: 531 STRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATT 590
STRARKNV +SDIKVDVCI+AFD+LY NGQPL+QEQL++RREHLY+SFEE+PGFFQFAT
Sbjct: 469 STRARKNVVMSDIKVDVCIFAFDMLYLNGQPLIQEQLKIRREHLYESFEEDPGFFQFATA 528
Query: 591 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLD 650
+TS DL+EIQKFLDAAVDASCEGLIIKT+++DATYEPSKRS NWLKLKKDY+ESIGDSLD
Sbjct: 529 ITSNDLEEIQKFLDAAVDASCEGLIIKTLNKDATYEPSKRSNNWLKLKKDYMESIGDSLD 588
Query: 651 LVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP 710
LVPIAAFHGRGKRTGVYGAFLLACYDSN EEFQSICKIGTGFSEA+LEERS+SLRS+VIP
Sbjct: 589 LVPIAAFHGRGKRTGVYGAFLLACYDSNKEEFQSICKIGTGFSEAVLEERSASLRSQVIP 648
Query: 711 KPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRFSVL 767
P+ YYR+ D+I PDVWFEPTEVWEVKAADLTISPVHRAA+G+VDPDK ++RF L
Sbjct: 649 TPKSYYRYGDSIKPDVWFEPTEVWEVKAADLTISPVHRAAVGIVDPDKGISLRFPRL 705
|
Length = 744 |
| >gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
| >gnl|CDD|234900 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185710 cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation domain of eukaryotic DNA Ligase I | Back alignment and domain information |
|---|
| >gnl|CDD|224706 COG1793, CDC9, ATP-dependent DNA ligase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|216280 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain | Back alignment and domain information |
|---|
| >gnl|CDD|153438 cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus | Back alignment and domain information |
|---|
| >gnl|CDD|185709 cd07898, Adenylation_DNA_ligase, Adenylation domain of ATP-dependent DNA Ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185711 cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenylation domain of archaeal and bacterial LigB-like DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185713 cd07903, Adenylation_DNA_ligase_IV, Adenylation domain of DNA Ligase IV | Back alignment and domain information |
|---|
| >gnl|CDD|235108 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|185715 cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185712 cd07902, Adenylation_DNA_ligase_III, Adenylation domain of DNA Ligase III | Back alignment and domain information |
|---|
| >gnl|CDD|153435 cd07893, OBF_DNA_ligase, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|234009 TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, ligase domain | Back alignment and domain information |
|---|
| >gnl|CDD|236599 PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|236428 PRK09247, PRK09247, ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|185708 cd07897, Adenylation_DNA_ligase_Bac1, Adenylation domain of putative bacterial ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|218210 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal region | Back alignment and domain information |
|---|
| >gnl|CDD|234477 TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent, PP_1105 family | Back alignment and domain information |
|---|
| >gnl|CDD|185704 cd06846, Adenylation_DNA_ligase_like, Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185714 cd07905, Adenylation_DNA_ligase_LigC, Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|153442 cd08040, OBF_DNA_ligase_family, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|153437 cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|234007 TIGR02776, NHEJ_ligase_prk, DNA ligase D | Back alignment and domain information |
|---|
| >gnl|CDD|185716 cd08039, Adenylation_DNA_ligase_Fungal, Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|153441 cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|236191 PRK08224, ligC, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|153436 cd07967, OBF_DNA_ligase_III, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|236070 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|182006 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|181662 PRK09125, PRK09125, DNA ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185707 cd07896, Adenylation_kDNA_ligase_like, Adenylation domain of kDNA ligases and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|153440 cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|222798 PHA00454, PHA00454, ATP-dependent DNA ligase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 797 | |||
| KOG0967 | 714 | consensus ATP-dependent DNA ligase I [Replication, | 100.0 | |
| PLN03113 | 744 | DNA ligase 1; Provisional | 100.0 | |
| PRK01109 | 590 | ATP-dependent DNA ligase; Provisional | 100.0 | |
| PRK03180 | 508 | ligB ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK09247 | 539 | ATP-dependent DNA ligase; Validated | 100.0 | |
| TIGR00574 | 514 | dnl1 DNA ligase I, ATP-dependent (dnl1). All prote | 100.0 | |
| KOG0966 | 881 | consensus ATP-dependent DNA ligase IV [Replication | 100.0 | |
| COG1793 | 444 | CDC9 ATP-dependent DNA ligase [DNA replication, re | 100.0 | |
| PHA02587 | 488 | 30 DNA ligase; Provisional | 100.0 | |
| TIGR02779 | 298 | NHEJ_ligase_lig DNA polymerase LigD, ligase domain | 100.0 | |
| PRK09632 | 764 | ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK08224 | 350 | ligC ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK05972 | 860 | ligD ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK09633 | 610 | ligD ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK07636 | 275 | ligB ATP-dependent DNA ligase; Reviewed | 100.0 | |
| cd07900 | 219 | Adenylation_DNA_ligase_I_Euk Adenylation domain of | 100.0 | |
| TIGR02776 | 552 | NHEJ_ligase_prk DNA ligase D. Members of this prot | 100.0 | |
| PHA00454 | 315 | ATP-dependent DNA ligase | 100.0 | |
| PRK09125 | 282 | DNA ligase; Provisional | 100.0 | |
| cd07903 | 225 | Adenylation_DNA_ligase_IV Adenylation domain of DN | 100.0 | |
| cd07901 | 207 | Adenylation_DNA_ligase_Arch_LigB Adenylation domai | 100.0 | |
| cd07902 | 213 | Adenylation_DNA_ligase_III Adenylation domain of D | 100.0 | |
| cd07897 | 207 | Adenylation_DNA_ligase_Bac1 Adenylation domain of | 100.0 | |
| cd08039 | 235 | Adenylation_DNA_ligase_Fungal Adenylation domain o | 100.0 | |
| cd07898 | 201 | Adenylation_DNA_ligase Adenylation domain of ATP-d | 100.0 | |
| PF01068 | 202 | DNA_ligase_A_M: ATP dependent DNA ligase domain; I | 100.0 | |
| cd07905 | 194 | Adenylation_DNA_ligase_LigC Adenylation domain of | 100.0 | |
| cd07906 | 190 | Adenylation_DNA_ligase_LigD_LigC Adenylation domai | 100.0 | |
| PF04675 | 177 | DNA_ligase_A_N: DNA ligase N terminus; InterPro: I | 100.0 | |
| cd07896 | 174 | Adenylation_kDNA_ligase_like Adenylation domain of | 100.0 | |
| cd06846 | 182 | Adenylation_DNA_ligase_like Adenylation domain of | 99.97 | |
| cd07967 | 139 | OBF_DNA_ligase_III The Oligonucleotide/oligosaccha | 99.97 | |
| cd07969 | 144 | OBF_DNA_ligase_I The Oligonucleotide/oligosacchari | 99.96 | |
| cd07893 | 129 | OBF_DNA_ligase The Oligonucleotide/oligosaccharide | 99.96 | |
| cd07968 | 140 | OBF_DNA_ligase_IV The Oligonucleotide/oligosacchar | 99.95 | |
| cd07895 | 215 | Adenylation_mRNA_capping Adenylation domain of GTP | 99.94 | |
| cd07972 | 122 | OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligo | 99.93 | |
| KOG4437 | 482 | consensus ATP-dependent DNA ligase III [Replicatio | 99.9 | |
| cd08040 | 108 | OBF_DNA_ligase_family The Oligonucleotide/oligosac | 99.87 | |
| cd07971 | 115 | OBF_DNA_ligase_LigD The Oligonucleotide/oligosacch | 99.87 | |
| PF04679 | 97 | DNA_ligase_A_C: ATP dependent DNA ligase C termina | 99.85 | |
| cd07894 | 342 | Adenylation_RNA_ligase Adenylation domain of RNA c | 99.75 | |
| cd07970 | 122 | OBF_DNA_ligase_LigC The Oligonucleotide/oligosacch | 99.73 | |
| PF01331 | 192 | mRNA_cap_enzyme: mRNA capping enzyme, catalytic do | 99.34 | |
| cd08041 | 77 | OBF_kDNA_ligase_like The Oligonucleotide/oligosacc | 99.33 | |
| COG1423 | 382 | ATP-dependent DNA ligase, homolog of eukaryotic li | 98.86 | |
| COG5226 | 404 | CEG1 mRNA capping enzyme, guanylyltransferase (alp | 98.81 | |
| PF14743 | 66 | DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2 | 98.72 | |
| cd09232 | 186 | Snurportin-1_C C-terminal m3G cap-binding domain o | 98.63 | |
| TIGR01209 | 374 | RNA ligase, Pab1020 family. Members of this family | 98.62 | |
| PRK08097 | 562 | ligB NAD-dependent DNA ligase LigB; Reviewed | 98.26 | |
| PRK01109 | 590 | ATP-dependent DNA ligase; Provisional | 98.11 | |
| smart00532 | 441 | LIGANc Ligase N family. | 98.08 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 98.01 | |
| cd00114 | 307 | LIGANc NAD+ dependent DNA ligase adenylation domai | 97.98 | |
| PRK14351 | 689 | ligA NAD-dependent DNA ligase LigA; Provisional | 97.89 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 97.82 | |
| PRK14350 | 669 | ligA NAD-dependent DNA ligase LigA; Provisional | 97.82 | |
| PF01653 | 315 | DNA_ligase_aden: NAD-dependent DNA ligase adenylat | 97.72 | |
| PF09414 | 186 | RNA_ligase: RNA ligase; InterPro: IPR021122 This e | 97.37 | |
| TIGR02307 | 325 | RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of t | 97.24 | |
| COG0272 | 667 | Lig NAD-dependent DNA ligase (contains BRCT domain | 96.97 | |
| PHA02142 | 366 | putative RNA ligase | 95.89 | |
| KOG3132 | 325 | consensus m3G-cap-specific nuclear import receptor | 95.75 | |
| PRK03180 | 508 | ligB ATP-dependent DNA ligase; Reviewed | 94.56 | |
| TIGR02306 | 341 | RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me | 93.43 | |
| TIGR00574 | 514 | dnl1 DNA ligase I, ATP-dependent (dnl1). All prote | 92.35 | |
| KOG2386 | 393 | consensus mRNA capping enzyme, guanylyltransferase | 92.21 | |
| PRK09247 | 539 | ATP-dependent DNA ligase; Validated | 91.42 | |
| PF04675 | 177 | DNA_ligase_A_N: DNA ligase N terminus; InterPro: I | 90.11 | |
| PLN03113 | 744 | DNA ligase 1; Provisional | 85.44 |
| >KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-151 Score=1260.92 Aligned_cols=612 Identities=63% Similarity=1.042 Sum_probs=596.4
Q ss_pred HHHhhhhhhcccCCCCCCCcccccccCCCccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhC
Q 003762 161 AELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAAN 240 (797)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~ 240 (797)
.+.+...+.+..+|..|.|.+.+||..|+++||+++|.+|+.|+.+++|+++++||+|||+.+++.+|+||+++|||++|
T Consensus 69 ~~~~~~~~~~~~~~~~y~~~~~a~wk~~~~~py~~~a~tF~kIe~~s~Rl~i~~il~n~f~~v~~~sP~dLlp~vYLsiN 148 (714)
T KOG0967|consen 69 ADSKSDSGLLKKSPEDYLPSENACWKDGSKVPYLELARTFEKIEETSGRLEIIDILSNFLRSVLATSPDDLLPTVYLSIN 148 (714)
T ss_pred ccccccccccCCCccccchhhhhhccccCcCcHHHHHHHHHHHHhhccceeHHHHHHHHHHHHHhcCchhhhhHHHHhhh
Confidence 35556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccCCChHHHHHHHHHHhCCCHHHHHHHHHhcCCHHHHHhhccccCCCCCCCCCCCHHHHHHHHHHHHHHhC
Q 003762 241 KIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAG 320 (797)
Q Consensus 241 ~l~P~~e~~elGIge~~L~kal~~a~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~~~L~kIA~~~G 320 (797)
+|.|+|+|.|||||+++|+|||+++||++..++|..|++.||||+||+.+|.+|++|+.|+||||.+|+..|++||..+|
T Consensus 149 ~l~P~yeGlELGvGes~l~KAi~EatGrt~~~vk~~~~~~GDLG~VA~~sR~sQ~~m~~P~pLtV~~VF~~Lr~IAk~sG 228 (714)
T KOG0967|consen 149 KLAPDYEGLELGVGESLLMKAIAEATGRTLSHVKNQYNKLGDLGLVAQGSRSSQRMMFKPKPLTVRDVFSTLRKIAKESG 228 (714)
T ss_pred ccCccccCccccccHHHHHHHHHHHhCccHHHHHHHHHhcCcHHHHHhhcccccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhcCCChHHHHHHHHhhhccCcccHHHHHHHHHHhhccCC----CCCCCCCCCcchHHHHHHHHH
Q 003762 321 KDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNE----QHSKPPPNIQSPLEEAAKIVK 396 (797)
Q Consensus 321 ~~s~~~K~~~L~~LL~~~t~~E~k~LiRiIlkdLRiGi~e~tvl~Ala~a~~~~~----~~~~~~~~l~~~l~~a~~~vk 396 (797)
++|+.+|+++++.||.+|++.|+|||+|.|.++||||++++|||.||++|+.++. .+++.+..+++.++.+..+|+
T Consensus 229 ~~S~~kK~~lik~Llvac~~~E~kyLiRsL~gkLRiGlaeqTvL~AL~~A~~~~~~~~~~~~~~~d~~kd~le~~~~ivk 308 (714)
T KOG0967|consen 229 KGSQNKKKDLIKALLVACRGIEAKYLIRSLEGKLRIGLAEQTVLAALGQAFVLNDNNDEEKSKKPDSLKDPLEEAAQIVK 308 (714)
T ss_pred cchhHHHHHHHHHHHHhcccccHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhccCchhhhccCCcchhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998763 244566678999999999999
Q ss_pred HHhhcCCchhhhHhhhhhcCccccCCccccCCCCCCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEecCCeE
Q 003762 397 QVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSV 476 (797)
Q Consensus 397 ~~y~~~pd~~~v~~~l~~~g~~~l~~~~~l~~g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~~g~V 476 (797)
++|+++|||+.|++.|+++|+++|.++|.++||+|++||||++++++.+++++|++..|.|||||||+|+|||+.++|.|
T Consensus 309 ~afcq~P~ydiivp~lL~~Gie~L~e~c~l~PGIPlKPMLAkpTK~i~evl~rf~~~~FTCEyKYDGeRAQIH~~edG~v 388 (714)
T KOG0967|consen 309 QAFCQLPDYDIIVPALLEHGIENLPETCKLTPGIPLKPMLAKPTKGIQEVLERFQDKAFTCEYKYDGERAQIHKLEDGTV 388 (714)
T ss_pred HHHhcCCchhhhHHHHHHhhhhhccccCccCCCCCCcchhcCcchhHHHHHHHhhCceeEEEeecCceeeeeEEccCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCccCCCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhcccCCccccccceEEEEeeeee
Q 003762 477 EIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILY 556 (797)
Q Consensus 477 ~ifSR~gkd~T~~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vFDILy 556 (797)
.|||||++++|.+||||...+..+..+.+.+||||||+|+||++.|+++|||.|++|.||+++..+++++||+|+|||||
T Consensus 389 ~IfSRN~E~~T~kYPDi~~~~~~~~kp~v~sFIlD~EvVA~Dr~~~~IlpFQvLSTRkRk~v~v~dikV~Vcvf~FDily 468 (714)
T KOG0967|consen 389 EIFSRNSENNTGKYPDIIEVISKLKKPSVKSFILDCEVVAWDREKGKILPFQVLSTRKRKNVDVNDIKVKVCVFVFDILY 468 (714)
T ss_pred EEEecccccccccCccHHHHHHHhhCCccceeEEeeeEEEEeccCCccCchhhhhhhhccccchhhceEEEEEEEEeeee
Confidence 99999999999999999999999888889999999999999999999999999999999999989999999999999999
Q ss_pred cCCccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCCCeEE
Q 003762 557 RNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLK 636 (797)
Q Consensus 557 lnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~~WlK 636 (797)
+||++|+++|+.+||++|.+.|.+++|+++++....+++.+++++||+++++.+|||+|+|.+|.+++|+|.+||.+|+|
T Consensus 469 ~ng~~Li~~pL~eRR~~l~e~f~e~~g~f~fat~~~tn~~~eiq~Fl~~sv~~~cEGlMvKtLd~~atYep~kRs~~WlK 548 (714)
T KOG0967|consen 469 LNGESLIQEPLRERRELLHESFKEIPGEFQFATSLDTNDIDEIQEFLEESVQNSCEGLMVKTLDTNATYEPSKRSNNWLK 548 (714)
T ss_pred eCChhhhhhhHHHHHHHHHhhcccCCCceeEeeeeccCCHHHHHHHHHHhhccCcceeEEEeeccccccCchhhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccCCccceEEEeEEeCCCCcCCccceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCCCCCc
Q 003762 637 LKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYY 716 (797)
Q Consensus 637 lK~dY~~~~~dtlDlvVIGa~~G~Gkr~g~~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p~~~~ 716 (797)
+|+||++|+||++||||||+|+|+|||+|+||+||+||||+++++|++|||+||||||++++++++.+....+..|++||
T Consensus 549 lKkDYldgvgdslDLv~iga~~G~GrrtG~yg~fLlacyn~dteefqsiCKigtGFsD~~l~e~~~~l~~~~~~~~~~~y 628 (714)
T KOG0967|consen 549 LKKDYLDGVGDSLDLVVIGAYYGRGRRTGWYGGFLLACYNPDTEEFQSICKIGTGFSDEFLQELHESLSSTVIDSPKPYY 628 (714)
T ss_pred hhhhhhcccccceeeeeeeeeeccccccccccceeEEeecCchHHHHHHHhhcCCCCHHHHHHHHHHhhhccccCcHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred ccCCCCCCceEeccceEEEEEeeeeecCCcccccccccCCCCCceeeeceEeeEeC
Q 003762 717 RFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRFSVLAHLSF 772 (797)
Q Consensus 717 ~~~~~~~pdvw~eP~~V~EV~~~eit~S~~~~aa~g~v~~~~G~sLRFPRf~riR~ 772 (797)
++....+||+||+|..||||+++|||.||.|+||.|+|++++|+|||||||+|+|+
T Consensus 629 ~~d~s~kPd~wf~p~~VwEvk~Adlt~SPiy~Aa~Glv~~dkGISlRFPRfiRiR~ 684 (714)
T KOG0967|consen 629 RFDESLKPDVWFEPTEVWEVKAADLTLSPIYKAALGLVDPDKGISLRFPRFIRIRD 684 (714)
T ss_pred ccCccCCCccccCHHHHHHHhhccccccchhHhhhcCcCCCCceeEecceeeEeec
Confidence 99998899999999999999999999999999999999999999999999999999
|
|
| >PLN03113 DNA ligase 1; Provisional | Back alignment and domain information |
|---|
| >PRK01109 ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
| >PRK03180 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK09247 ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
| >TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
| >KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02587 30 DNA ligase; Provisional | Back alignment and domain information |
|---|
| >TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain | Back alignment and domain information |
|---|
| >PRK09632 ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK08224 ligC ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK05972 ligD ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK09633 ligD ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK07636 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I | Back alignment and domain information |
|---|
| >TIGR02776 NHEJ_ligase_prk DNA ligase D | Back alignment and domain information |
|---|
| >PHA00454 ATP-dependent DNA ligase | Back alignment and domain information |
|---|
| >PRK09125 DNA ligase; Provisional | Back alignment and domain information |
|---|
| >cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV | Back alignment and domain information |
|---|
| >cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases | Back alignment and domain information |
|---|
| >cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III | Back alignment and domain information |
|---|
| >cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins | Back alignment and domain information |
|---|
| >cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases | Back alignment and domain information |
|---|
| >PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins | Back alignment and domain information |
|---|
| >cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases | Back alignment and domain information |
|---|
| >cd07967 OBF_DNA_ligase_III The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07969 OBF_DNA_ligase_I The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07893 OBF_DNA_ligase The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >cd07968 OBF_DNA_ligase_IV The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes | Back alignment and domain information |
|---|
| >cd07972 OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >KOG4437 consensus ATP-dependent DNA ligase III [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd08040 OBF_DNA_ligase_family The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >cd07971 OBF_DNA_ligase_LigD The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >PF04679 DNA_ligase_A_C: ATP dependent DNA ligase C terminal region ; InterPro: IPR012309 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins | Back alignment and domain information |
|---|
| >cd07970 OBF_DNA_ligase_LigC The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate | Back alignment and domain information |
|---|
| >cd08041 OBF_kDNA_ligase_like The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF14743 DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2Q2U_D 2Q2T_A 1FVI_A 1P8L_A | Back alignment and domain information |
|---|
| >cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1 | Back alignment and domain information |
|---|
| >TIGR01209 RNA ligase, Pab1020 family | Back alignment and domain information |
|---|
| >PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed | Back alignment and domain information |
|---|
| >PRK01109 ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
| >smart00532 LIGANc Ligase N family | Back alignment and domain information |
|---|
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
| >cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain | Back alignment and domain information |
|---|
| >PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
| >PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain | Back alignment and domain information |
|---|
| >TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family | Back alignment and domain information |
|---|
| >COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02142 putative RNA ligase | Back alignment and domain information |
|---|
| >KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK03180 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family | Back alignment and domain information |
|---|
| >TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
| >KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09247 ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
| >PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >PLN03113 DNA ligase 1; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 797 | ||||
| 1x9n_A | 688 | Crystal Structure Of Human Dna Ligase I Bound To 5' | 1e-171 | ||
| 2hiv_A | 621 | Atp-Dependent Dna Ligase From S. Solfataricus Lengt | 9e-75 | ||
| 3rr5_A | 570 | Dna Ligase From The Archaeon Thermococcus Sp. 1519 | 6e-54 | ||
| 2cfm_A | 561 | Atp-Dependent Dna Ligase From Pyrococcus Furiosus L | 2e-49 | ||
| 4eq5_A | 571 | Dna Ligase From The Archaeon Thermococcus Sibiricus | 2e-48 | ||
| 3gde_A | 558 | The Closed Conformation Of Atp-Dependent Dna Ligase | 1e-45 | ||
| 3l2p_A | 579 | Human Dna Ligase Iii Recognizes Dna Ends By Dynamic | 1e-34 | ||
| 1vs0_A | 310 | Crystal Structure Of The Ligase Domain From M. Tube | 1e-09 | ||
| 3vnn_A | 139 | Crystal Structure Of A Sub-Domain Of The Nucleotidy | 2e-06 |
| >pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To 5'-Adenylated, Nicked Dna Length = 688 | Back alignment and structure |
|
| >pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus Length = 621 | Back alignment and structure |
| >pdb|3RR5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sp. 1519 Length = 570 | Back alignment and structure |
| >pdb|2CFM|A Chain A, Atp-Dependent Dna Ligase From Pyrococcus Furiosus Length = 561 | Back alignment and structure |
| >pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus Length = 571 | Back alignment and structure |
| >pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From Archaeoglobus Fulgidus Length = 558 | Back alignment and structure |
| >pdb|3L2P|A Chain A, Human Dna Ligase Iii Recognizes Dna Ends By Dynamic Switching Between Two Dna Bound States Length = 579 | Back alignment and structure |
| >pdb|1VS0|A Chain A, Crystal Structure Of The Ligase Domain From M. Tuberculosis Ligd At 2.4a Length = 310 | Back alignment and structure |
| >pdb|3VNN|A Chain A, Crystal Structure Of A Sub-Domain Of The Nucleotidyltransferase (Adenylation) Domain Of Human Dna Ligase Iv Length = 139 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Length = 688 | Back alignment and structure |
|---|
Score = 695 bits (1794), Expect = 0.0
Identities = 301/639 (47%), Positives = 427/639 (66%), Gaps = 13/639 (2%)
Query: 139 PTPPSPKKRKVNVNSVSA-KEKIAELKSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLS 197
P P+ KK + KE AE + + P ACW+ G++VP++ ++
Sbjct: 3 PRKPAVKKEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVA 62
Query: 198 LVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDAS 257
F+ I + R+ + + + N+LR+V+ +P DL+PV+YL+ N + P +GLELG+GD
Sbjct: 63 RTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGV 122
Query: 258 IIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAK 317
++KA+A+A GR V+ + E GD+GLVA+ SRS+Q +M P PLT + VF FR IA+
Sbjct: 123 LLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIAR 182
Query: 318 EAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQH 377
G S KK + IK L VA E +++ R L +LR+GLAEQ++LAAL QA
Sbjct: 183 LTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPG 242
Query: 378 SKPPPNI------------QSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCS 425
+ PP + ++ LEE I+KQ F +P ++I+P LL G+ L C
Sbjct: 243 QEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCK 302
Query: 426 FTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAER 485
+PGIP+ PMLA PT+G+SE++ +F++ FTCEYKYDG+RAQIH LE G V+I+SRN E
Sbjct: 303 LSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 362
Query: 486 NTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKV 545
NTGK+PD++ + ++K PSV SF+LD E VA+DREK++I PFQ L+TR RK V S+I+V
Sbjct: 363 NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQV 422
Query: 546 DVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDA 605
VC+YAFD++Y NG+ L++E L RR+ L ++F E G F FAT+L + D+++I +FL+
Sbjct: 423 QVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQ 482
Query: 606 AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTG 665
+V SCEGL++KT+D DATYE +KRS NWLKLKKDY++ +GD+LDLV I A+ GRGKR G
Sbjct: 483 SVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAG 542
Query: 666 VYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPD 725
YG FLLA YD ++EE Q+ICK+GTGFS+ LEE SL++ V+P PRPY R + PD
Sbjct: 543 RYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPD 602
Query: 726 VWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRF 764
W +P+ VWEVK ADL++SP++ AA G+VD DK ++RF
Sbjct: 603 HWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRF 641
|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Length = 621 | Back alignment and structure |
|---|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Length = 561 | Back alignment and structure |
|---|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Length = 558 | Back alignment and structure |
|---|
| >3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} Length = 579 | Back alignment and structure |
|---|
| >1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} Length = 310 | Back alignment and structure |
|---|
| >1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 Length = 348 | Back alignment and structure |
|---|
| >3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} Length = 139 | Back alignment and structure |
|---|
| >1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* Length = 297 | Back alignment and structure |
|---|
| >2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} Length = 389 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} Length = 370 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 797 | |||
| 1x9n_A | 688 | DNA ligase I; 5'-adenylated nicked DNA, protein-DN | 100.0 | |
| 2hiv_A | 621 | Thermostable DNA ligase; ATP-dependent, open confo | 100.0 | |
| 3gde_A | 558 | DNA ligase; DNA-binding domain, adenylation domain | 100.0 | |
| 2cfm_A | 561 | Thermostable DNA ligase; protein-nucleotide comple | 100.0 | |
| 3l2p_A | 579 | DNA ligase 3; DNA ligase, DNA repair, ATP-binding, | 100.0 | |
| 1vs0_A | 310 | Putative DNA ligase-like protein RV0938/MT0965; OB | 100.0 | |
| 1a0i_A | 348 | DNA ligase; DNA replication; HET: DNA ATP; 2.60A { | 100.0 | |
| 1fvi_A | 297 | Chlorella virus DNA ligase-adenylate; adenylated D | 100.0 | |
| 4htp_A | 240 | DNA ligase 4; helical domain, DNA binding domain, | 100.0 | |
| 1p16_A | 395 | GTP--RNA, mRNA capping enzyme alpha subunit; guany | 100.0 | |
| 1ckm_A | 330 | MRNA capping enzyme; nucleotidyltransferase; HET: | 99.97 | |
| 3vnn_A | 139 | DNA ligase 4; non-homologous END joining, DNA repa | 99.96 | |
| 3kyh_C | 461 | MRNA-capping enzyme subunit alpha; 5' modification | 99.91 | |
| 3rtx_A | 343 | MRNA-capping enzyme; guanylyltransferase, RNA poly | 99.9 | |
| 2vug_A | 389 | PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transfe | 99.49 | |
| 3qwu_A | 370 | DNA ligase; structural genomics, PSI-2, midwest ce | 99.37 | |
| 1ta8_A | 332 | DNA ligase, NAD-dependent; nucleotidyl transferase | 98.24 | |
| 1b04_A | 318 | Protein (DNA ligase); DNA replication; 2.80A {Geob | 98.15 | |
| 1s68_A | 249 | RNA ligase 2; ribonucleic acid ligase, RNA repair; | 98.05 | |
| 2hvq_A | 335 | ORF1, hypothetical 37.6 kDa protein in GP24-HOC in | 98.04 | |
| 1xk5_A | 204 | Snurportin-1; protein-RNA-complex, transport prote | 97.89 | |
| 1zau_A | 328 | DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacteriu | 97.8 | |
| 4glw_A | 305 | DNA ligase; inhibitor, ligase-ligase inhibitor com | 97.71 | |
| 4glx_A | 586 | DNA ligase; inhibitor, ligase-ligase inhibitor-DNA | 97.56 | |
| 2owo_A | 671 | DNA ligase; protein-DNA complex, ligase-DNA comple | 97.52 | |
| 3uq8_A | 322 | DNA ligase; adenylated protein, ATP-grAsp, rossman | 97.45 | |
| 3gjx_B | 365 | Snurportin-1; transport, cytoplasm, nucleus, RNA-b | 97.42 | |
| 3jsl_A | 318 | DNA ligase; NAD+-dependent, DNA damage, DNA repair | 97.27 | |
| 1dgs_A | 667 | DNA ligase; AMP complex, NAD+-dependent; HET: DNA | 97.19 | |
| 1xdn_A | 277 | RNA editing ligase MP52; HET: MSE ATP; 1.20A {Tryp | 97.14 | |
| 3sgi_A | 615 | DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tub | 97.08 | |
| 2c5u_A | 375 | RNA ligase, T4 RNA ligase 1; nucleotidyl transfera | 96.75 | |
| 4e6n_A | 427 | Metallophosphoesterase; RNA repair, RNA ligase, li | 96.67 | |
| 3gde_A | 558 | DNA ligase; DNA-binding domain, adenylation domain | 94.72 | |
| 2cfm_A | 561 | Thermostable DNA ligase; protein-nucleotide comple | 93.18 | |
| 2hiv_A | 621 | Thermostable DNA ligase; ATP-dependent, open confo | 92.78 | |
| 1x9n_A | 688 | DNA ligase I; 5'-adenylated nicked DNA, protein-DN | 90.41 | |
| 4htp_A | 240 | DNA ligase 4; helical domain, DNA binding domain, | 89.32 |
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-124 Score=1104.35 Aligned_cols=615 Identities=47% Similarity=0.841 Sum_probs=566.6
Q ss_pred hhhhhcccCCCCCCCcccccccCCCccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCC
Q 003762 165 SNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAP 244 (797)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P 244 (797)
..+.....+...|+|..+++|..|++|+|..||++|++|++|++|++|+++|++||+.+++.+|+|++++|||++|+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~P 109 (688)
T 1x9n_A 30 LDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGP 109 (688)
T ss_dssp -CGGGCCTTCSSCCHHHHCCSCTTSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSC
T ss_pred ccccccccCcccCCccccccccCCCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhcCChHHHHHHHHHHcCCCCc
Confidence 34556777888999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CccccccCCChHHHHHHHHHHhCCCHHHHHHHHHhcCCHHHHHhhccccCCCCCCCCCCCHHHHHHHHHHHHHHhCCChH
Q 003762 245 AHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQ 324 (797)
Q Consensus 245 ~~e~~elGIge~~L~kal~~a~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~s~ 324 (797)
+|++++||||+++|+|+|++++|++.+.+++.|++.||||+||++++++|++++.+++|||.+|++.|++||..+|++|+
T Consensus 110 ~~~~~elgi~~~~L~k~i~~~~g~~~~~~~~~~~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s~ 189 (688)
T 1x9n_A 110 PQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST 189 (688)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHH
T ss_pred cccccccCcChHHHHHHHHHHHCcCHHHHHHHHHhcCCHHHHHHHHHhcccccCCCCCCcHHHHHHHHHHHHhhcCcchH
Confidence 99999999999999999999999999999999999999999999998888888788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhhhccCcccHHHHHHHHHHhhccCCCCCC------------CCCCCcchHHHHH
Q 003762 325 EKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSK------------PPPNIQSPLEEAA 392 (797)
Q Consensus 325 ~~K~~~L~~LL~~~t~~E~k~LiRiIlkdLRiGi~e~tvl~Ala~a~~~~~~~~~------------~~~~l~~~l~~a~ 392 (797)
++|+.+|..||.+|++.|++||+|+|+++||||++++||+.|||.||.+++.+.. .+..+++.+++++
T Consensus 190 ~~k~~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (688)
T 1x9n_A 190 AKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQG 269 (688)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhcccccCccHHHHHHHHHHHhccCccccccchhhhhhhcccchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988753211 1113456788899
Q ss_pred HHHHHHhhcCCchhhhHhhhhhcCccccCCccccCCCCCCccccccccCChHHHHhhcCCCceEEEeecceEEEEEEEec
Q 003762 393 KIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLE 472 (797)
Q Consensus 393 ~~vk~~y~~~pd~~~v~~~l~~~g~~~l~~~~~l~~g~Pv~PMLA~~~~~i~~~l~k~~g~~~~~E~KyDG~R~qih~~~ 472 (797)
..|+++|+.+|||+.|++.++++|+..+.++|.+++|+|++||||++++++.++++++++.+|++|+||||+|+|+|+++
T Consensus 270 ~~v~~~~~~~p~~~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~ 349 (688)
T 1x9n_A 270 MILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALE 349 (688)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECT
T ss_pred HHHHHHHhhCCCHHHHHHHHHhcchhhcccccCcCCCCCccCccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcC
Confidence 99999999999999999999999988888889999999999999999999999999998889999999999999999966
Q ss_pred CCeEEEEecCCCccCCCcchHHHHHHhhcCCCCCCeEEEEEEEEEecCCCcccChhhHHhhhcccCCccccccceEEEEe
Q 003762 473 DGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAF 552 (797)
Q Consensus 473 ~g~V~ifSR~gkd~T~~yPel~~~l~~~~~~~v~~~ILDGElVa~d~~~g~~lpFq~L~~R~Rk~~~~~~~~~~v~~~vF 552 (797)
+|+|++|||+|+++|.+||++.+++..++..+++++|||||+|+||..+|+++|||.|++|.|+++.......+++|++|
T Consensus 350 ~g~v~l~SR~g~d~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~r~r~~~~~~~~~~~v~~~vF 429 (688)
T 1x9n_A 350 GGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF 429 (688)
T ss_dssp TSCEEEECTTSCBCTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTTSCSSCCCGGGCCSEEEEEEE
T ss_pred CCeEEEEeCCCCcccccchHHHHHHHHhhccCCCCeEEeEEEEEEeCCCCCcCCHHHHHHHhhcccchhhcccceEEEEE
Confidence 78999999999999999999999888877656789999999999998888899999999998876554445679999999
Q ss_pred eeeecCCccccCCcHHHHHHHHHHhhccCCCcEEEEeEEecCCHHHHHHHHHHHHHcCCceeEEEeCCCCCCccCCCCCC
Q 003762 553 DILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSL 632 (797)
Q Consensus 553 DILylnG~~L~~~Pl~ERr~lL~~l~~~~~~~i~~v~~~~~~~~eei~~~f~~ai~~g~EGlmvK~~~~ds~Y~pGkRs~ 632 (797)
||||+||+++++.||.+||++|++++.+.+++++++++..+++.++++++|++++++|+||||+|++|++|+|++|+|+.
T Consensus 430 DlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y~~GkRs~ 509 (688)
T 1x9n_A 430 DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSH 509 (688)
T ss_dssp EEEEETTEECTTSCHHHHHHHHHHHBCCBTTTEEECCEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCSE
T ss_pred echhhcCCccccCCHHHHHHHHHHhhccCCCcEEEEeeEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCCCCCCcCc
Confidence 99999999999999999999999999887788999999999999999999999999999999999986679999999999
Q ss_pred CeEEEccccccccCCccceEEEeEEeCCCCcCCccceEEEEEecCCCceEEEeccccCCCCHHHHHHHHHhhccccCCCC
Q 003762 633 NWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP 712 (797)
Q Consensus 633 ~WlKlK~dY~~~~~dtlDlvVIGa~~G~Gkr~g~~gsfllg~~d~~~g~~~~vgkVGTGfSd~~l~~l~~~l~~~~~~~p 712 (797)
+|+|+|++|+++|+||+|+||||+++|+|+|+|++|+|+|||||+++++|++||||||||||+++++|.+.++++++..|
T Consensus 510 ~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~~ 589 (688)
T 1x9n_A 510 NWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSP 589 (688)
T ss_dssp EEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTTTEEEEEEEECCSCCHHHHHHHHHHHHHTEESSC
T ss_pred hHheeehhhhccccccccEEEEEEEeCCCCCCCceeeEEEEEEeCCCCeEEEEeeeCCCCCHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999877899999999999999999999999999998877
Q ss_pred CCCcccCCCCCCceEeccceEEEEEeeeeecCCcccccccccCCCCCceeeeceEeeEeC--CcccccC
Q 003762 713 RPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKVFTVRFSVLAHLSF--PLLFCLG 779 (797)
Q Consensus 713 ~~~~~~~~~~~pdvw~eP~~V~EV~~~eit~S~~~~aa~g~v~~~~G~sLRFPRf~riR~--~~~~~~~ 779 (797)
++++.++....|+|||+|..||||+|+++|.||+|++|.|.+.+++|++||||||+|+|+ +|.+|..
T Consensus 590 ~~~~~~~~~~~p~vwv~P~~V~EV~~~e~t~S~~~~~~~g~~~~~~G~sLRfPrf~riR~DK~~~ea~t 658 (688)
T 1x9n_A 590 RPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATT 658 (688)
T ss_dssp CTTEECSSSCCCSEEECSCCEEEEEESEEEEESSCCTTTTTSCSSCEEEEESCEEEEECTTCCGGGSCB
T ss_pred CCccccCCCCCCcEEeCCcEEEEEEEEeeeccccccccccccccCCCceEECcEEEEEeCCCChHHCCC
Confidence 677777766789999999999999999999999999999999988999999999999999 9999954
|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* | Back alignment and structure |
|---|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* | Back alignment and structure |
|---|
| >3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 | Back alignment and structure |
|---|
| >1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* | Back alignment and structure |
|---|
| >4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A* | Back alignment and structure |
|---|
| >1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3 | Back alignment and structure |
|---|
| >1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B* | Back alignment and structure |
|---|
| >3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A | Back alignment and structure |
|---|
| >2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} | Back alignment and structure |
|---|
| >3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A* | Back alignment and structure |
|---|
| >1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2 | Back alignment and structure |
|---|
| >1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4 | Back alignment and structure |
|---|
| >2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A* | Back alignment and structure |
|---|
| >1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} | Back alignment and structure |
|---|
| >2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A* | Back alignment and structure |
|---|
| >3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B | Back alignment and structure |
|---|
| >3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A* | Back alignment and structure |
|---|
| >1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* | Back alignment and structure |
|---|
| >1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4 | Back alignment and structure |
|---|
| >3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} | Back alignment and structure |
|---|
| >4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A* | Back alignment and structure |
|---|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* | Back alignment and structure |
|---|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* | Back alignment and structure |
|---|
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 | Back alignment and structure |
|---|
| >4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 797 | ||||
| d1x9na1 | 272 | a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human ( | 1e-81 | |
| d1x9na3 | 220 | d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human ( | 9e-67 | |
| d1x9na2 | 148 | b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (H | 7e-38 | |
| d1a0ia2 | 239 | d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-te | 1e-37 | |
| d1fvia2 | 188 | d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-te | 7e-28 | |
| d1p16a2 | 245 | d.142.2.3 (A:1-245) mRNA capping enzyme alpha subu | 2e-11 | |
| d1ckma2 | 228 | d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA | 5e-10 | |
| d1s68a_ | 233 | d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Ba | 2e-08 |
| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ATP-dependent DNA ligase DNA-binding domain superfamily: ATP-dependent DNA ligase DNA-binding domain family: ATP-dependent DNA ligase DNA-binding domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 260 bits (665), Expect = 1e-81
Identities = 101/261 (38%), Positives = 155/261 (59%), Gaps = 12/261 (4%)
Query: 176 EFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVV 235
+ P ACW+ G++VP++ ++ F+ I + R+ + + + N+LR+V+ +P DL+PV+
Sbjct: 11 NYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVL 70
Query: 236 YLAANKIAPAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQS 295
YL+ N + P +GLELG+GD ++KA+A+A GR V+ + E GD+GLVA+ SRS+Q
Sbjct: 71 YLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQR 130
Query: 296 MMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIRLLQSKLR 355
+M P PLT + VF FR IA+ G S KK + IK L VA E +++ R L +LR
Sbjct: 131 LMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLR 190
Query: 356 IGLAEQTLLAALGQAAVYNEQHSKPPPNI------------QSPLEEAAKIVKQVFSVLP 403
+GLAEQ++LAAL QA + PP + ++ LEE I+KQ F +P
Sbjct: 191 LGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVP 250
Query: 404 VYEKIVPALLTDGVWNLSNTC 424
++I+P LL G+ L C
Sbjct: 251 DLDRIIPVLLEHGLERLPEHC 271
|
| >d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 220 | Back information, alignment and structure |
|---|
| >d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 148 | Back information, alignment and structure |
|---|
| >d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Length = 239 | Back information, alignment and structure |
|---|
| >d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 188 | Back information, alignment and structure |
|---|
| >d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Length = 245 | Back information, alignment and structure |
|---|
| >d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 228 | Back information, alignment and structure |
|---|
| >d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Length = 233 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 797 | |||
| d1x9na1 | 272 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1x9na3 | 220 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1a0ia2 | 239 | ATP-dependent DNA ligase, N-terminal domain {Bacte | 99.98 | |
| d1x9na2 | 148 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 99.97 | |
| d1fvia2 | 188 | ATP-dependent DNA ligase, N-terminal domain {Chlor | 99.97 | |
| d1p16a2 | 245 | mRNA capping enzyme alpha subunit {Yeast (Candida | 99.82 | |
| d1ckma2 | 228 | RNA guanylyltransferase (mRNA capping enzyme), N-t | 99.79 | |
| d1s68a_ | 233 | RNA ligase 2, N-terminal domain {Bacteriophage T4 | 99.37 | |
| d1a0ia1 | 109 | ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: | 98.86 | |
| d1fvia1 | 104 | ATP-dependent DNA ligase {Chlorella virus PBCV-1 [ | 98.67 | |
| d1b04a_ | 312 | Adenylation domain of NAD+-dependent DNA ligase {B | 97.8 | |
| d1ta8a_ | 313 | Adenylation domain of NAD+-dependent DNA ligase {E | 97.28 | |
| d1dgsa3 | 314 | Adenylation domain of NAD+-dependent DNA ligase {T | 97.25 | |
| d1xdna_ | 265 | RNA editing ligase MP52 {Trypanosoma brucei [TaxId | 97.03 | |
| d1x9na1 | 272 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 94.68 |
| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ATP-dependent DNA ligase DNA-binding domain superfamily: ATP-dependent DNA ligase DNA-binding domain family: ATP-dependent DNA ligase DNA-binding domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-51 Score=428.76 Aligned_cols=256 Identities=39% Similarity=0.687 Sum_probs=230.6
Q ss_pred cccCCCCCCCcccccccCCCccchHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCccCCCcccc
Q 003762 170 LKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGL 249 (797)
Q Consensus 170 ~~~~~~~~~p~~~~~~~~~~~~~F~~la~~~e~I~~tssR~~k~~iL~~~fr~~i~~~p~dl~~~vyL~~~~l~P~~e~~ 249 (797)
++..-..|+|.+.+||..|+++||..||++|++|++|++|++|+++|++||+++++.+|+|+.++|||++|+|+|+|++.
T Consensus 5 ~~p~~~~~~p~~~~~w~~~~~vpf~~la~~f~~ie~ts~rl~k~~iL~~~f~~~~~~~p~dl~~~vyL~~g~l~P~~e~~ 84 (272)
T d1x9na1 5 YNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGL 84 (272)
T ss_dssp CCTTCSSCCHHHHCCSCTTSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSSCGGGCC
T ss_pred CCcccccCCcchhhcccCCCCcCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhCCcCcchhch
Confidence 34445579999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHhCCCHHHHHHHHHhcCCHHHHHhhccccCCCCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHH
Q 003762 250 ELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKN 329 (797)
Q Consensus 250 elGIge~~L~kal~~a~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~~~L~kIA~~~G~~s~~~K~~ 329 (797)
+||||++.|+|+|++++|++++.+++.|+++||+|+||+.++++|.+++.+++|||.+|++.|++||..+|++|+++|++
T Consensus 85 elgige~~l~kai~e~~G~~~~~i~~~~~~~GDlG~va~~~~~~~~~~~~~~~LTv~~V~~~L~~IA~~sG~~s~~~K~~ 164 (272)
T d1x9na1 85 ELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKID 164 (272)
T ss_dssp CCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHCcCHHHHHHHHHHcCCHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHhhhccCcccHHHHHHHHHHhhccCCCCCCC-C-----------CCCcchHHHHHHHHHH
Q 003762 330 RIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKP-P-----------PNIQSPLEEAAKIVKQ 397 (797)
Q Consensus 330 ~L~~LL~~~t~~E~k~LiRiIlkdLRiGi~e~tvl~Ala~a~~~~~~~~~~-~-----------~~l~~~l~~a~~~vk~ 397 (797)
+|..||.+|++.|++||+|+|+++||||++++||+.||++||.++...... + ..+.+.++++..+|++
T Consensus 165 ~i~~Ll~~~~~~E~kyliR~l~g~LRIGv~e~tvl~ALa~Af~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vk~ 244 (272)
T d1x9na1 165 IIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQ 244 (272)
T ss_dssp HHHHHHHHCCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhcCcccccccchhhhhhhccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877542211 0 1234668888899999
Q ss_pred HhhcCCchhhhHhhhhhcCccccCCccc
Q 003762 398 VFSVLPVYEKIVPALLTDGVWNLSNTCS 425 (797)
Q Consensus 398 ~y~~~pd~~~v~~~l~~~g~~~l~~~~~ 425 (797)
+|++||||+.|+++++++|+++|.++|+
T Consensus 245 ay~~~P~~~~iv~~ll~~gi~~l~~~ck 272 (272)
T d1x9na1 245 TFCEVPDLDRIIPVLLEHGLERLPEHCK 272 (272)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHTGGGCC
T ss_pred HhhhCCCHHHHHHHHHHhCHHHHHhhcC
Confidence 9999999999999999999999988874
|
| >d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
| >d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d1fvia1 b.40.4.6 (A:190-293) ATP-dependent DNA ligase {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
|---|
| >d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|