Citrus Sinensis ID: 003779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790------
Protein Sequence
MKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccHHcccccccccHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccccccccEEEcEEEEccccccccccccccccccccccccccccccccccHHcEEEEEEcccccccccccccccccccccccccccccccEcccccccccccEccccccccccccccccccccccccccEEEccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHcccccHHccccHHHccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MKLEEFRKKKAAERAkkassvsqpqasdfslhdqhhleadrvrvtdldgagtsdgpdkavvslplvmhnddnKALKLAQQSQqvslsdkrinsncfendlnssSAYLAQTYsnnqetsgsagpvnvsnsqetkdvnndFVIYssgqgrlrdgimsnqflsllpeasqdydssnssksgfqgieesqskgndsfpkvptlvnsgpshdfvtkispqnsvstlfqskpsnaialgnghsfhsssegtahlttstggsasevglntpsttnfsdpvsfntgegkpsnsasglaslqstpfkrseysgynfdagnsfnhvpvssatnkftlgkSRASfldslnvprassgtlfeqteperdsfmsssslnsmdvlgsspaqnpsmekettgafsktttsnipsafdylgnptvstsdrgdirrlgsnessienqhgfystkhnEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAenssltdsynQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedlaitdttldnsnqdthddaslpridasgstllpesgrLALEGlavniphdqmRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNManenisfrqpdsasthdhtayadegDEVVERVLGWIMKlfpggpsrrrtskll
Flexible Loop (DISEMBL)
MKLEEFRKKKAaerakkassvsqpqasdfslHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSnsqetkdvnnDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESqskgndsfpkVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFldslnvprassgtlfeqteperDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAaenssltdsynqQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASevigleekalrlrsnelklerqlensqseisSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWImklfpggpsrrrtskll
Low Complexity Region (SEG)
MkleefrkkkaaerakkaSSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAsqdydssnssksGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERdsfmsssslnsmdvlgssPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQrsleasralseslaaensslTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENsqseissykkkisslekeRQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKtaastvnaststEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Disordered region (IsUnstruct)
*****************************************************************************************************************************************DFVIYSS************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE***************************************************************************************************************************LALEGLAVNIPHDQMRMIHNINALISELALEK*******************************************************************GDEVVERVLGWIMKLF*************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************EVVERVLGWIM****************
Disordered Region (DISEMBL)
*******************************HDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKL***********KRINSNCFENDLNSSSAYLAQTYS**************SNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEA**************************SFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFN*****************STPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFE**************LNSM**********************KTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE****************************STIEALQEE****************SIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFR***********AYADEGDEVVERVLGWIMKLFPGG**********
Disordered Region (DISPRO)
***************************************DRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNN********P*NV****ETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPE*S********S*SGFQ**EESQSKGNDSFPKVPTLVNSGPSHDFV*K****************N*IA*************TAHLTTSTGGSASE********TNFSDPVSFNTGEG***********************************************************************************************************************************SDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI*********************************************************L**LAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMA*E******************ADEGDEVVERVLGWIMKLFPG***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEASRALSESLAAENSSLTDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKILASEVIGLEEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	796
225433351	804	PREDICTED: uncharacterized protein LOC10	0.971	0.961	0.538	0.0
356533381	784	PREDICTED: uncharacterized protein LOC10	0.942	0.956	0.497	0.0
255554298	713	conserved hypothetical protein [Ricinus	0.865	0.966	0.464	1e-144
297831252	728	hypothetical protein ARALYDRAFT_898989 [	0.624	0.682	0.554	1e-143
145338880	714	protein BLISTER [Arabidopsis thaliana] g	0.677	0.754	0.520	1e-141
125528809	760	hypothetical protein OsI_04881 [Oryza sa	0.626	0.656	0.481	1e-109
242055353	770	hypothetical protein SORBIDRAFT_03g04350	0.554	0.572	0.487	1e-109
115441767	760	Os01g0911800 [Oryza sativa Japonica Grou	0.626	0.656	0.481	1e-109
414879058	748	TPA: hypothetical protein ZEAMMB73_30879	0.572	0.609	0.482	1e-108
147843847	443	hypothetical protein VITISV_004427 [Viti	0.368	0.661	0.679	1e-104

>gi|225433351|ref|XP_002282738.1| PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera] gi|297741880|emb|CBI33315.3| unnamed protein product [Vitis vinifera]

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/808 (53%), Positives = 548/808 (67%), Gaps = 35/808 (4%)

Query: 2   KLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVV 61
           +LEEFRKKKAA+RAKK +S+SQ Q++D SL  Q  LE ++VRV D DGAG SDG  +AV 
Sbjct: 19  RLEEFRKKKAADRAKKVASISQLQSADVSLCVQP-LENEQVRVMDSDGAGISDGVGEAVT 77

Query: 62  SLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQ-----E 116
            +     N+DNK +++ Q S+  S SD          D  + SA   QT  N+Q     +
Sbjct: 78  KVI----NNDNKKIEIFQNSEPCS-SDIYAKPPFSTKDYKAFSADSVQTQVNDQGFNRYD 132

Query: 117 TSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSK 176
            SG  G V     Q  K+ N+D  I++  +G   + I+S+Q ++  P+A +D DSS SS+
Sbjct: 133 ASGFLGLVG----QLAKEKNDDGGIHAGAEGSAYE-IVSDQSIAF-PQAIRDTDSS-SSQ 185

Query: 177 SGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGN-G 235
           S F  +EE+Q K + S  K  T+++ G S   +   S +NS          NAI   N G
Sbjct: 186 SNFHRMEETQQKDHKSSLKSFTVIDPGISQVPLANASSENS---------GNAILPNNYG 236

Query: 236 HSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQ-S 294
           ++   SS  + H  T+   SA  VG + P + +F+  +  N  + K S+S   L S   +
Sbjct: 237 YANMKSSADSVHPITTAKQSAFGVGQDVPGSVDFNVHMLSNKEDKKLSSSFGYLPSTHGA 296

Query: 295 TPFK-RSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTE 353
           +P    S  + + FD   S NH+P+ S T +    +SR SFLDS+NVPR  S +    TE
Sbjct: 297 SPLASESSSTSFAFDVRGSSNHLPLYSVTPETNARRSRPSFLDSINVPRVPSASHLPLTE 356

Query: 354 PERDS--FMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVST 411
           P +    F SSS +NSMDVLGSS +     E E    FSK   SN PS FD+  N +VS 
Sbjct: 357 PGKAEPFFSSSSKVNSMDVLGSSASTKSLAESENFEPFSKAGNSNGPSLFDHSINSSVSV 416

Query: 412 SDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSE 471
            +R ++ R G +++S+E +  F+S K NEDFAALEQHIEDLTQEKF+LQR+LEASRAL+E
Sbjct: 417 GNRVEMLRHGLDQNSLERKFEFHSQKQNEDFAALEQHIEDLTQEKFSLQRALEASRALAE 476

Query: 472 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 531
           SLAAENSSLTDSYNQQ SVVNQLKS+MEKLQEEIK QLV+LESF+ EYAN +LECNAADE
Sbjct: 477 SLAAENSSLTDSYNQQGSVVNQLKSDMEKLQEEIKAQLVDLESFKIEYANAQLECNAADE 536

Query: 532 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 591
           RAK+LASEVIGLEEKALRLRS+ELKLERQLENS +EISS+KKK+SSLEKERQD Q TI+A
Sbjct: 537 RAKLLASEVIGLEEKALRLRSSELKLERQLENSNAEISSFKKKVSSLEKERQDLQLTIDA 596

Query: 592 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTL---DNSNQDTHD 648
           LQEEKK++Q K+RKAS +GKSID  K+     + STST+DL   D      + S+ +  +
Sbjct: 597 LQEEKKLLQKKVRKASANGKSIDASKSPTDRKDVSTSTDDLVNEDNACMIPETSSLEMLN 656

Query: 649 DASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALS 708
            AS+   + S   LLP+ G++  E  +VNIP DQMRMI NINALISELALEKEEL+QAL 
Sbjct: 657 SASVQANELSSFPLLPDGGQMNFEVSSVNIPADQMRMIQNINALISELALEKEELMQALV 716

Query: 709 SELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEG 768
           +E +QSSKLKDLN ELSRKLE QTQRLELLT+Q+MANE I  RQPDS   HD+ AYADEG
Sbjct: 717 TESSQSSKLKDLNKELSRKLEVQTQRLELLTSQSMANEVIQARQPDSRIMHDNAAYADEG 776

Query: 769 DEVVERVLGWIMKLFPGGPSRRRTSKLL 796
           DEVVERVLGWIM+LFPGGP++RRTSKLL
Sbjct: 777 DEVVERVLGWIMRLFPGGPAKRRTSKLL 804

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533381|ref|XP_003535243.1| PREDICTED: uncharacterized protein LOC100817279 [Glycine max]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/804 (49%), Positives = 525/804 (65%), Gaps = 54/804 (6%)

Query: 2   KLEEFRKKKAAERAKKASSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVV 61
           +LEEFRKKKAAER KKA+S  Q   SD SL+ +   E + VRV + DG  TSD    +V 
Sbjct: 26  RLEEFRKKKAAERTKKAASSGQVHNSDDSLNKKQSSEVENVRVNESDGVTTSDAVGGSVT 85

Query: 62  SL-PLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQE---- 116
               L M ND N  L  +Q S Q SL+          NDLN SS  L + +SN  E    
Sbjct: 86  DTSTLGMRNDKNLNL-FSQSSNQGSLAGSTF---LTRNDLNMSSTSLGEAHSNIDEGKRY 141

Query: 117 -TSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSS 175
             S      + S + E   VN+ + I++ G   +     ++Q + L  + SQ++D  N +
Sbjct: 142 NASSVTASADFSQNNERNKVNDIYGIHAVGVDGIPYVTTNHQSVPLCSQESQEFD--NHA 199

Query: 176 KSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNG 235
            S   G+ ++QS  ++S  K   + ++  S+ F +KI+PQNSV T  Q KP+N+    +G
Sbjct: 200 TSSLHGVNDNQSNKSNSSLKDYAVTDNFSSY-FPSKITPQNSVDTPLQIKPTNSSTFDSG 258

Query: 236 HSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQST 295
           +S                 S    G +   ++ F + V+         +S + L SL   
Sbjct: 259 YSH----------------SLLSGGFSDSFSSKFRETVT---------SSDNNLPSLHGA 293

Query: 296 PFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPE 355
              + + +GY  +A NS NH P+ S   + +  +SR SFLDSLNV R S G+ F Q+E  
Sbjct: 294 TMPKYDSTGY--EARNSSNHTPIHSLPTESSSRRSRPSFLDSLNVTRPSLGSPFHQSE-- 349

Query: 356 RDSFMSS---SSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTS 412
           +DS MS+   SS N  D+ GS+    PS E +    FS  TT+N+ S+ + L  P+V  +
Sbjct: 350 QDSLMSNYLESSSN--DISGSAYFHKPSEETKIMPLFSNFTTANVHSSLEPLTTPSVVDN 407

Query: 413 DRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSES 472
           D        + ES +E +H +YS+  NEDF ALEQHIEDLT+EKF+LQR+LEASR L+ES
Sbjct: 408 DNQGALITSTRESGMEKKHDYYSSSQNEDFTALEQHIEDLTKEKFSLQRALEASRTLAES 467

Query: 473 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 532
           LA ENS+LTD+YNQQRSVVNQLKS+ME L E+IK +LVELE+ ++EY N +LECNAADER
Sbjct: 468 LATENSTLTDNYNQQRSVVNQLKSDMENLHEDIKARLVELEAIKSEYTNAQLECNAADER 527

Query: 533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592
           AK+LASEVIGLEEKALRLRS+ELKLE+QLEN++ EISSY+KK+SSL+K+R D QSTIEAL
Sbjct: 528 AKLLASEVIGLEEKALRLRSSELKLEKQLENAKEEISSYRKKMSSLDKDRHDLQSTIEAL 587

Query: 593 QEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASL 652
           QEEKKM+ SKLRKASG GKSI+      S  + STSTEDLA  D   ++SN + +D+A+ 
Sbjct: 588 QEEKKMLLSKLRKASGIGKSIE---NQTSKRDVSTSTEDLASEDPASNSSNPEINDNAA- 643

Query: 653 PRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELA 712
              +AS  + + E+   +     VNIPHDQMRMI NINALISELALEKEEL++AL+SE +
Sbjct: 644 ---EASSLSSVTETRHSSFGVSPVNIPHDQMRMIENINALISELALEKEELIKALTSESS 700

Query: 713 QSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVV 772
           + S++K++N ELSRKLE QTQRLELLTAQ+M NENIS +QPDS + +++T+YADEGDEVV
Sbjct: 701 ECSRMKEINMELSRKLEVQTQRLELLTAQSMVNENISAKQPDSRAMYENTSYADEGDEVV 760

Query: 773 ERVLGWIMKLFPGGPSRRRTSKLL 796
           ERVLGWIMKLFPGGPSRRRTSKLL
Sbjct: 761 ERVLGWIMKLFPGGPSRRRTSKLL 784

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554298|ref|XP_002518189.1| conserved hypothetical protein [Ricinus communis] gi|223542785|gb|EEF44322.1| conserved hypothetical protein [Ricinus communis]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 371/798 (46%), Positives = 470/798 (58%), Gaps = 109/798 (13%)

Query: 2   KLEEFRKKKAAERAKKASSVSQPQASDF-SLHDQHHLEADRVRVTDLDGAGTSDGPDKAV 60
           +LEEFRKKKAA+RA+KA++ SQP AS   S++++  LE++ VR+TD DGAGTSDGP +  
Sbjct: 22  RLEEFRKKKAADRARKAAATSQPLASSVVSVNEKQALESEIVRLTDSDGAGTSDGPIEVT 81

Query: 61  VSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGS 120
           VS   +    D  A+  +    +  L+D  +NS+ F    N+S A               
Sbjct: 82  VSGTTL---KDADAIPPSMSHYKAPLADIHVNSHDFTRP-NASVA--------------- 122

Query: 121 AGPVNVSNSQETKDVNNDFVIYSSGQ-GRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGF 179
               +     ET  +NND   YS  Q G +   I+S++  S+ P + + +    S    F
Sbjct: 123 ---ADAKYDIETDQMNNDTDTYSGSQDGVVPYVILSSRHSSIPPPSQESF----SQSIPF 175

Query: 180 QGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFH 239
           Q +E + S  + +F        + PS    TKIS             SNA  L     F 
Sbjct: 176 QSMEYNTSLKDYAF--------TAPS-PLQTKIS-------------SNASTLVTDVDF- 212

Query: 240 SSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKR 299
                  H     G S     L      +F+  +  + GE   S S  G  S      + 
Sbjct: 213 -----IQHNNNLRGSS-----LEVEQDKHFNGSLRNDFGEANFSISLGGFPSAYGKSMQT 262

Query: 300 SEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSF 359
           S+  GY+ D+ +S NH  + S T++    +SR SFLDSLNV RASSGT F+ TE +++SF
Sbjct: 263 SDTIGYDSDSKSSSNHTQLLSGTSEPNSRRSRPSFLDSLNVTRASSGTSFQPTELQKESF 322

Query: 360 MSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRR 419
           M   S N M  L SS  QN S+E +T G                  +P   ++    +  
Sbjct: 323 MPGKS-NGMGALDSSTFQNLSVEAQTLG-----------------HHPMTFSASSNSVEM 364

Query: 420 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 479
              +E+S   +H FYS+KHNEDFAALEQHIEDLTQEKF+LQR+LE+SRAL+ESLAAENSS
Sbjct: 365 SNIDENSWGRKHEFYSSKHNEDFAALEQHIEDLTQEKFSLQRALESSRALAESLAAENSS 424

Query: 480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 539
           LTD+YNQQRS VNQLKS+MEKLQEEIKV LVELES + EY N +LEC+A+DERAKILASE
Sbjct: 425 LTDNYNQQRSAVNQLKSDMEKLQEEIKVHLVELESVKMEYGNAKLECDASDERAKILASE 484

Query: 540 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKM 598
           VIGLEEK        + L           S++  ++S  L      F  T      EKK+
Sbjct: 485 VIGLEEKVFNFF---VML----------FSTFTTQVSLVLCFNNCQFYDT------EKKL 525

Query: 599 MQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDAS 658
           +QSKLRKAS SGKS+D  + + +  + STSTED       LD  N++T D  +L   D  
Sbjct: 526 LQSKLRKASASGKSLDISQNSGNKKDMSTSTED-------LDPCNEETVDTTALIGNDI- 577

Query: 659 GSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLK 718
              + PE+G+  LE   V+IP DQMR+I NIN LISELALEKEEL+QALSSE +Q S+LK
Sbjct: 578 --PIHPENGQSNLEVSTVHIPADQMRLIENINTLISELALEKEELMQALSSESSQCSRLK 635

Query: 719 DLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGW 778
           DLNNELSRKLE QTQRLELLTAQ+MANENI  R PDS +  + T YADEGDEVVERVLGW
Sbjct: 636 DLNNELSRKLEAQTQRLELLTAQSMANENIQARLPDSHAMQETTTYADEGDEVVERVLGW 695

Query: 779 IMKLFPGGPSRRRTSKLL 796
           IMKLFPGGPSRRRTSKLL
Sbjct: 696 IMKLFPGGPSRRRTSKLL 713

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831252|ref|XP_002883508.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata] gi|297329348|gb|EFH59767.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 288/519 (55%), Positives = 378/519 (72%), Gaps = 22/519 (4%)

Query: 281 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNV 340
           KP+ S+S L     T  + SE S ++    N  +  P++SA ++  + +SR SFLDSLN+
Sbjct: 229 KPTLSSSYLFRSPDTSSRPSESSDFSV---NFTSSSPLNSAKSEAIVKRSRPSFLDSLNI 285

Query: 341 PRASSGTLFEQTEPERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPS 399
            RA   T ++  E + D   SS S L   D  G S     S  +++ G    +  S+ P+
Sbjct: 286 SRAPE-TQYQHPEIKADLVTSSGSQLTGSDGFGPSYI---SGRRDSNGPSLTSGASDSPN 341

Query: 400 AFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFAL 459
            F+   +P    ++             +     F   K N+DF ALEQHIEDLTQEKF+L
Sbjct: 342 PFEKFRSPLYPAAN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEKFSL 390

Query: 460 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519
           QR L+ASRAL+ESLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+VQ+ ELES R EY
Sbjct: 391 QRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQVQMGELESVRIEY 450

Query: 520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 579
           AN +LECNAADER++ILASEVI LE+KALRLRSNELKLER+LEN+Q+E+ SYKKK+ SLE
Sbjct: 451 ANAQLECNAADERSQILASEVISLEDKALRLRSNELKLERELENAQAEMLSYKKKLQSLE 510

Query: 580 KERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTL 639
           K+RQD QSTI+ALQEEKK++Q+ ++KAS  GKS D  KT+ S  NASTSTE LAI+DTT 
Sbjct: 511 KDRQDLQSTIKALQEEKKVLQTMVQKASSGGKSTDLSKTSTSRKNASTSTEGLAISDTTP 570

Query: 640 DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE 699
            +SNQ+T D A+L   D+S + ++PE+G+L LEG ++++P DQMR+IHNIN LI+ELA+E
Sbjct: 571 KSSNQET-DSATLLESDSSNTAIIPETGQLTLEGFSLSVPADQMRVIHNINTLIAELAIE 629

Query: 700 KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENIS--FRQPDSAS 757
           KEELVQALSSEL++S+++++LN ELSRKLE QT+RLEL+TAQ MA +N+S   +Q DS  
Sbjct: 630 KEELVQALSSELSRSAQVQELNKELSRKLEAQTKRLELVTAQKMAIDNVSPEKQQLDSHV 689

Query: 758 THDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 796
             + T  ADEGDEVVERVLGWIMK+FPGGPS+RRTSKLL
Sbjct: 690 VQERTPIADEGDEVVERVLGWIMKMFPGGPSKRRTSKLL 728

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338880|ref|NP_189040.3| protein BLISTER [Arabidopsis thaliana] gi|9294667|dbj|BAB03016.1| unnamed protein product [Arabidopsis thaliana] gi|332643320|gb|AEE76841.1| protein BLISTER [Arabidopsis thaliana]

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 295/567 (52%), Positives = 393/567 (69%), Gaps = 28/567 (4%)

Query: 234 NGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQ 293
           +G    SS + +   TT   GS  EV  N   +      +       KP+ S+S L +  
Sbjct: 172 HGSGLTSSRKDSLQPTTRMAGSFDEVAKNQQGSGELGGSIV-----QKPTLSSSYLFNSP 226

Query: 294 STPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTE 353
            T  + SE S ++ +  +S    P++SA ++ T+ +SR SFLDSLN+ RA   T ++  E
Sbjct: 227 DTSSRPSEPSDFSVNITSS---SPLNSAKSEATVKRSRPSFLDSLNISRAPE-TQYQHPE 282

Query: 354 PERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTT-TSNIPSAFDYLGNPTVST 411
            + D   SS S L+  D  G S     S  +++ G  S T+  S+ P+ F+   +     
Sbjct: 283 IQADLVTSSGSQLSGSDGFGPSYI---SGRRDSNGPSSLTSGASDYPNPFEKFRSSLYPA 339

Query: 412 SDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSE 471
           ++             +     F   K N+DF ALEQHIEDLTQEKF+LQR L+ASRAL+E
Sbjct: 340 AN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEKFSLQRDLDASRALAE 388

Query: 472 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 531
           SLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+ Q+ ELES R EYAN +LECNAADE
Sbjct: 389 SLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQAQMGELESVRVEYANAQLECNAADE 448

Query: 532 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 591
           R++ILASEVI LE+KALRLRSNELKLER+LE +Q+E+ SYKKK+ SLEK+RQD QSTI+A
Sbjct: 449 RSQILASEVISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKA 508

Query: 592 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDAS 651
           LQEEKK++Q+ ++KAS  GKS D  K + S  N STSTE LAI+DTT ++SNQ+T D  +
Sbjct: 509 LQEEKKVLQTMVQKASSGGKSTDLSKNSTSRKNVSTSTEGLAISDTTPESSNQET-DSTT 567

Query: 652 LPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSEL 711
           L   D+S + ++PE+ +L LEG ++++P DQMR+IHNIN LI+ELA+EKEELVQALSSEL
Sbjct: 568 LLESDSSNTAIIPETRQLTLEGFSLSVPADQMRVIHNINTLIAELAIEKEELVQALSSEL 627

Query: 712 AQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENIS--FRQPDSASTHDHTAYADEGD 769
           ++S+ +++LN ELSRKLE QTQRLEL+TAQ MA +N+S   +QPD+    + T  ADEGD
Sbjct: 628 SRSAHVQELNKELSRKLEAQTQRLELVTAQKMAIDNVSPEKQQPDTHVVQERTPIADEGD 687

Query: 770 EVVERVLGWIMKLFPGGPSRRRTSKLL 796
           EVVERVLGWIMK+FPGGPS+RRTSKLL
Sbjct: 688 EVVERVLGWIMKMFPGGPSKRRTSKLL 714

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528809|gb|EAY76923.1| hypothetical protein OsI_04881 [Oryza sativa Indica Group]

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 254/528 (48%), Positives = 335/528 (63%), Gaps = 29/528 (5%)

Query: 281 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 332
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 333 SFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKT 392
           SFLDS+ V RA + T     EP + S    +S NS       P Q  +   +  G+    
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNS-NSESSFFQPPNQQSAGSNDVDGSLKSG 362

Query: 393 TTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDL 452
                     Y  +    +    D R L  +    +N   F     ++DFAALEQ IEDL
Sbjct: 363 RQEYNNEKGSYGNSIRTDSFPSKDERNLHHSTQMFQN---FTIPGKDDDFAALEQLIEDL 419

Query: 453 TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512
           T+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S+ME+LQ EI+ QL+ L
Sbjct: 420 TKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTSDMERLQNEIQAQLLAL 479

Query: 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 572
           ES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELKLE+++E   SEISSY+
Sbjct: 480 ESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELKLEKEIEGLSSEISSYR 539

Query: 573 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL 632
           +K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     K +A   +AST+TEDL
Sbjct: 540 RKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIEKPSADKRDASTATEDL 599

Query: 633 AITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LEGLAVNIPHDQMRMIHN 688
              +++   +     D          G T +  S  +A    LE ++ +IPHDQ+RMI N
Sbjct: 600 DTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLEEVSSSIPHDQLRMIDN 653

Query: 689 INALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENI 748
           IN+L+SELA+E+EEL++AL  E +  SKLK+LN +L++KLE QT RLELL++Q MANEN+
Sbjct: 654 INSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLEIQTHRLELLSSQRMANENV 713

Query: 749 SFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 796
             +  D+ S +D T YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 714 LPKPIDTRSINDATMYADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 760

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055353|ref|XP_002456822.1| hypothetical protein SORBIDRAFT_03g043500 [Sorghum bicolor] gi|241928797|gb|EES01942.1| hypothetical protein SORBIDRAFT_03g043500 [Sorghum bicolor]

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/513 (48%), Positives = 331/513 (64%), Gaps = 72/513 (14%)

Query: 317 PVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSS-------------- 362
           P  S+    T  +SR SFLDS+ V RA   T     EP + + +SS              
Sbjct: 297 PFLSSGYPTTYTRSRPSFLDSIGVQRAPPTTQASYREPAKTNQLSSNLNYQSPFLQQSNQ 356

Query: 363 --SSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL 420
             +  N+ D+  +S +Q  S EK + G+      SN P   D+                L
Sbjct: 357 QSTGSNATDISFASESQKYSHEKGSYGS------SNPP---DF---------------SL 392

Query: 421 GSNESSIENQHG------FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA 474
              E SI  QHG      F +   ++DFAALEQ IEDLT+EKF+LQR+++ S+ L+E+LA
Sbjct: 393 PKEERSI--QHGNQTFQNFTTHGKDDDFAALEQLIEDLTKEKFSLQRTVQKSQELAETLA 450

Query: 475 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 534
            +NS+LTD +NQQ  +++QL S+ME+LQEEI+ QL+ LES R EYAN +LECNAADERAK
Sbjct: 451 TDNSALTDKFNQQAHIISQLTSDMERLQEEIQAQLLALESVRTEYANAQLECNAADERAK 510

Query: 535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 594
           +LA+EVI LE+KALRLRS+ELKLE+++E   SEISSY++K+SSLEKERQ  QST+EALQE
Sbjct: 511 VLAAEVILLEDKALRLRSSELKLEKEIEGLHSEISSYRRKVSSLEKERQHLQSTVEALQE 570

Query: 595 EKKMMQSKLRKASGSGKSIDFGKTAASTV--------NASTSTEDL---AITDTTLDNSN 643
           EKK++ SKLR       +I   + A +TV        +AST+TEDL    ++ +    S 
Sbjct: 571 EKKLLYSKLR-------NIPMNERATTTVEKPSVEKRDASTATEDLDTGELSSSETLTST 623

Query: 644 QDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEEL 703
            DT +DA      ++  +  P     +LE ++ +IP DQ+RMI NIN+L+SELA+E+EEL
Sbjct: 624 VDTLEDAGTSVRRSNIMSDFP-----SLEEVSSSIPDDQLRMIDNINSLMSELAVEREEL 678

Query: 704 VQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTA 763
           ++AL  E +  SKLKDLN +L++KLE QT RLELLT+Q MANEN   +  D+ S +D   
Sbjct: 679 LRALRIESSNCSKLKDLNKDLTQKLEIQTHRLELLTSQRMANENALAKPIDTRSINDAAI 738

Query: 764 YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 796
           YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 739 YADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 770

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441767|ref|NP_001045163.1| Os01g0911800 [Oryza sativa Japonica Group] gi|20161363|dbj|BAB90287.1| heavy meromyosin-like [Oryza sativa Japonica Group] gi|113534694|dbj|BAF07077.1| Os01g0911800 [Oryza sativa Japonica Group] gi|125573067|gb|EAZ14582.1| hypothetical protein OsJ_04505 [Oryza sativa Japonica Group]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 254/528 (48%), Positives = 335/528 (63%), Gaps = 29/528 (5%)

Query: 281 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 332
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 333 SFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKT 392
           SFLDS+ V RA + T     EP + S    +S NS       P Q  +   +  G+    
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNS-NSESSFFQPPNQQSAGSNDVDGSLKSG 362

Query: 393 TTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDL 452
                     Y  +    +    D R L  +    +N   F     ++DFAALEQ IEDL
Sbjct: 363 RQEYNNEKGSYGNSIRTDSFPSKDERNLHHSTQMFQN---FTIPGKDDDFAALEQLIEDL 419

Query: 453 TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 512
           T+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S+ME+LQ EI+ QL+ L
Sbjct: 420 TKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTSDMERLQNEIQAQLLAL 479

Query: 513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 572
           ES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELKLE+++E   SEISSY+
Sbjct: 480 ESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELKLEKEIEGLSSEISSYR 539

Query: 573 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL 632
           +K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     K +A   +AST+TEDL
Sbjct: 540 RKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIEKPSADKRDASTATEDL 599

Query: 633 AITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LEGLAVNIPHDQMRMIHN 688
              +++   +     D          G T +  S  +A    LE ++ +IPHDQ+RMI N
Sbjct: 600 DTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLEEVSSSIPHDQLRMIDN 653

Query: 689 INALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENI 748
           IN+L+SELA+E+EEL++AL  E +  SKLK+LN +L++KLE QT RLELL++Q MANEN+
Sbjct: 654 INSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLEIQTHRLELLSSQRMANENV 713

Query: 749 SFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 796
             +  D+ S +D T YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 714 LPKPIDTRSINDATLYADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 760

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414879058|tpg|DAA56189.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879059|tpg|DAA56190.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879060|tpg|DAA56191.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays]

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/518 (48%), Positives = 331/518 (63%), Gaps = 62/518 (11%)

Query: 304 GYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPER------- 356
           G NF+  +     P  S+    T  +SR SFLDS+ V R    T     EP +       
Sbjct: 268 GVNFERQD-----PFLSSGYPTTYTRSRPSFLDSIGVQRVPPTTQASYREPAKANQLSHN 322

Query: 357 ----DSFMSSS-----SLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNP 407
                SF+  S     S N+ D+  +S +Q  S EK + G      +SN P   D+    
Sbjct: 323 SNYQSSFVKQSNQQPTSSNAADISFASESQEYSHEKGSYG------SSNHP---DF---- 369

Query: 408 TVSTSDRGDIRRLGSNESSIENQHG------FYSTKHNEDFAALEQHIEDLTQEKFALQR 461
                       L   E SI  QHG      F +   ++DFA LEQ IEDLT+EKF+LQR
Sbjct: 370 -----------SLPKEERSI--QHGKQTFQNFATHGKDDDFATLEQLIEDLTKEKFSLQR 416

Query: 462 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 521
           SL+ S+ L+E+LA +NS+LTD +NQQ  V++QL S+ME+LQEEI+ QL+ LES R EYAN
Sbjct: 417 SLQKSQELAETLATDNSALTDKFNQQAHVISQLTSDMERLQEEIQAQLLALESVRTEYAN 476

Query: 522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 581
            +LEC+AADERAK+LA+EVI LE+KALRLRS+ELKLE+++E   SEIS+Y++K+SSLEKE
Sbjct: 477 AQLECSAADERAKVLAAEVILLEDKALRLRSSELKLEKEVEGLHSEISAYRRKVSSLEKE 536

Query: 582 RQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL---AITDTT 638
           RQ  QST+EALQEEKK++ SKLR    + ++    K +    +AST TEDL    I+ + 
Sbjct: 537 RQHLQSTVEALQEEKKLLYSKLRNIPVNERATTVEKPSVDKKDASTVTEDLDTGEISSSE 596

Query: 639 LDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELAL 698
              S  D  +DA    + ++  +  P S     E ++ +IP DQ+RMI NIN+L+SELA+
Sbjct: 597 TLTSTVDILEDAGTSVLRSNIVSDFPSS-----EQVSSSIPDDQLRMIDNINSLMSELAV 651

Query: 699 EKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSAST 758
           E+EEL++AL  E +  SKLK+LN +L++KLE QTQRLELLT+Q MANEN   +  D+   
Sbjct: 652 EREELLRALRIESSNCSKLKELNKDLTQKLEVQTQRLELLTSQRMANENALAKPIDTRPI 711

Query: 759 HDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 796
           ++ T YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 712 NEATMYADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 748

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843847|emb|CAN79450.1| hypothetical protein VITISV_004427 [Vitis vinifera]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/296 (67%), Positives = 239/296 (80%), Gaps = 3/296 (1%)

Query: 504 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 563
           E +  +V+LESF+ EYAN +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLERQLEN
Sbjct: 148 EKRCLMVDLESFKIEYANAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLERQLEN 207

Query: 564 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTV 623
           + +EISS+KKK+SSLEKERQD Q TI+ALQEEKK++Q K+RKAS +GKSID  K+     
Sbjct: 208 TNAEISSFKKKVSSLEKERQDLQLTIDALQEEKKLLQKKVRKASANGKSIDASKSPTDRK 267

Query: 624 NASTSTEDLAITDTTL---DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPH 680
           + STST+DL   D      + S+ +  + AS+   + S   LLP+ G++  E  +VNIP 
Sbjct: 268 DVSTSTDDLVNEDNACMIPETSSLEMLNSASVQANELSSFPLLPDGGQMNFEVSSVNIPA 327

Query: 681 DQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 740
           DQMRMI NINALISELALEKEEL+QAL +E +QSSKLKDLN ELSRKLE QTQRLELLT+
Sbjct: 328 DQMRMIQNINALISELALEKEELMQALVTESSQSSKLKDLNKELSRKLEVQTQRLELLTS 387

Query: 741 QNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 796
           Q+MANE I  RQPDS   HD+ AYADEGDEVVERVLGWIM+LFPGGP++RRTSKLL
Sbjct: 388 QSMANEVIQARQPDSRIMHDNAAYADEGDEVVERVLGWIMRLFPGGPAKRRTSKLL 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	796
TAIR|locus:2076071	714	BLI "BLISTER" [Arabidopsis tha	0.724	0.808	0.437	1.8e-112
DICTYBASE|DDB_G0271670	374	DDB_G0271670 [Dictyostelium di	0.405	0.863	0.172	6.5e-06
POMBASE|SPBC215.13	534	SPBC215.13 "sequence orphan" [	0.452	0.674	0.194	0.00015
UNIPROTKB|O18515	534	O18515 "Nucleoporin p62" [Hydr	0.253	0.378	0.221	0.00045
ZFIN|ZDB-GENE-080618-2	538	prdm1b "PR domain containing 1	0.398	0.589	0.213	0.00052
CGD|CAL0006203	768	orf19.4906 [Candida albicans (	0.304	0.315	0.247	0.00092
UNIPROTKB|Q5APQ2	768	CaO19.4906 "Putative uncharact	0.304	0.315	0.247	0.00092
UNIPROTKB|I3LRD3	2501	CENPE "Uncharacterized protein	0.340	0.108	0.224	0.00094

TAIR|locus:2076071 BLI "BLISTER" [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
 Identities = 266/608 (43%), Positives = 359/608 (59%)

Query:   200 VNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEV 259
             VN+ P     + I  Q+S S    S      +L +G S     +G  H +  T      +
Sbjct:   127 VNTRPEVVPYSNIDKQSSESFDRASTLRETASLFSGTSMQM--DGFIHGSGLTSSRKDSL 184

Query:   260 GLNTPSTTNFSDPVSFNTGEG--------KPSNSASGLASLQSTPFKRSEYSGYNFDAGN 311
                T    +F +      G G        KP+ S+S L +   T  + SE S ++ +  +
Sbjct:   185 QPTTRMAGSFDEVAKNQQGSGELGGSIVQKPTLSSSYLFNSPDTSSRPSEPSDFSVNITS 244

Query:   312 SFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXX 371
             S    P++SA ++ T+ +SR SFLDSLN+ RA   T ++   PE                
Sbjct:   245 SS---PLNSAKSEATVKRSRPSFLDSLNISRAPE-TQYQH--PEIQADLVTSSGSQLSGS 298

Query:   372 XXXPAQNPSMEKETTGAFSKTT-TSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQ 430
                     S  +++ G  S T+  S+ P+ F+   +     ++ G +   G  + S+  Q
Sbjct:   299 DGFGPSYISGRRDSNGPSSLTSGASDYPNPFEKFRSSLYPAAN-GVMP--GFTDFSMPKQ 355

Query:   431 HGFYSTKHNEDFAALEQHIEDLTQEKFALQXXXXXXXXXXXXXXXXXXXXTDSYNQQRSV 490
                     N+DF ALEQHIEDLTQEKF+LQ                    TD+YNQQR +
Sbjct:   356 --------NDDFTALEQHIEDLTQEKFSLQRDLDASRALAESLASENSSMTDTYNQQRGL 407

Query:   491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550
             VNQLK +ME+L ++I+ Q+ ELES R EYAN +LECNAADER++ILASEVI LE+KALRL
Sbjct:   408 VNQLKDDMERLYQQIQAQMGELESVRVEYANAQLECNAADERSQILASEVISLEDKALRL 467

Query:   551 RSNELKLERQLENXXXXXXXXXXXXXXXXXXRQDFQSTIEALQEEKKMMQSKLRKASGSG 610
             RSNELKLER+LE                   RQD QSTI+ALQEEKK++Q+ ++KAS  G
Sbjct:   468 RSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEKKVLQTMVQKASSGG 527

Query:   611 KSIDFGKXXXXXXXXXXXXEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA 670
             KS D  K            E LAI+DTT ++SNQ+T D  +L   D+S + ++PE+ +L 
Sbjct:   528 KSTDLSKNSTSRKNVSTSTEGLAISDTTPESSNQET-DSTTLLESDSSNTAIIPETRQLT 586

Query:   671 LEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH 730
             LEG ++++P DQMR+IHNIN LI+ELA+EKEELVQALSSEL++S+ +++LN ELSRKLE 
Sbjct:   587 LEGFSLSVPADQMRVIHNINTLIAELAIEKEELVQALSSELSRSAHVQELNKELSRKLEA 646

Query:   731 QTQRLELLTAQNMANENIS--FRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPS 788
             QTQRLEL+TAQ MA +N+S   +QPD+    + T  ADEGDEVVERVLGWIMK+FPGGPS
Sbjct:   647 QTQRLELVTAQKMAIDNVSPEKQQPDTHVVQERTPIADEGDEVVERVLGWIMKMFPGGPS 706

Query:   789 RRRTSKLL 796
             +RRTSKLL
Sbjct:   707 KRRTSKLL 714

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0010091 "trichome branching" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 6.5e-06, P = 6.5e-06
 Identities = 56/325 (17%), Positives = 128/325 (39%)

Query:    76 KLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDV 135
             +L + ++   + D  + S  F N L++SS+  + + S++  +S S+   + S+S  +   
Sbjct:    41 QLEKTNKMAEVGDLGVAS--FLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 98

Query:   136 NNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEESQSKGNDSFPK 195
             ++     SS          S+   S    +                   S S  + S   
Sbjct:    99 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 158

Query:   196 VPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGS 255
               +  +S  S    +  S  +S S+   S  S++ +  +  S  SSS  ++  ++S+  S
Sbjct:   159 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 218

Query:   256 ASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNH 315
             +S    ++ S+++ S   S ++     S+S+S  +S  S+    S  S  +  + +S + 
Sbjct:   219 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 278

Query:   316 VPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXXXXXP 375
                SS+++  +   S +S   S +   +SS +    +                       
Sbjct:   279 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 338

Query:   376 AQNPSMEKETTGAFSKTTTSNIPSA 400
             + + S    ++ + S +++S+  S+
Sbjct:   339 SSSSSSSSSSSSSSSSSSSSSSSSS 363

GO:0005576 "extracellular region" evidence=IEA

POMBASE|SPBC215.13 SPBC215.13 "sequence orphan" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 127 (49.8 bits), Expect = 0.00015, P = 0.00015
 Identities = 72/370 (19%), Positives = 143/370 (38%)

Query:    74 ALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNS--QE 131
             +++++  S  +S SD  + S+ F +  +S+S+      S +  T  SA P + S+S    
Sbjct:   154 SVEVSISSSSLSSSDP-LTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSS 212

Query:   132 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEESQSKGND 191
             +  V++     SS    L    +S    S+   +                   S S  + 
Sbjct:   213 SSVVSSSSSPSSSSSSTLTSSSLSTS--SIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS 270

Query:   192 SFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTS 251
             S     +  +S P+    T IS  +S S+   S  S   +  +  S  SS+  ++ +++S
Sbjct:   271 SIISSSSSSSSSPTSTSST-ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSS 329

Query:   252 TGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGN 311
             +  S+S    ++  +++ S P S +      S+ +S  +S  ST    S  S     + +
Sbjct:   330 SSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSS--SSFSSTVSSSSSTSSSTLTSSS 387

Query:   312 SFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXX 371
             S +  P SS+++  +L   ++S     +    SS      T                   
Sbjct:   388 SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSK 447

Query:   372 XXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPT-VSTSDRGDIRRLGSNESSIENQ 430
                 A + S+   ++  + ++T   +       G+ T  S S +  I  +   +SS  + 
Sbjct:   448 PILTASSSSLLTSSSHTYERSTVYVVTVETVSSGSSTYASQSTQTSILLVIVGDSSSTDS 507

Query:   431 HGFYSTKHNE 440
              G  ST H++
Sbjct:   508 SGASST-HSK 516

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=NAS

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|O18515 O18515 "Nucleoporin p62" [Hydra vulgaris (taxid:6087)]

 Score = 106 (42.4 bits), Expect = 0.00045, Sum P(3) = 0.00045
 Identities = 49/221 (22%), Positives = 91/221 (41%)

Query:   205 SHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTP 264
             ++ F TK +     +    + P+ + +LG+G +   S    A  +++  G  S  G +  
Sbjct:     2 AYSFGTKPTTSTGFNFSTSATPAVSFSLGSGSTQPFSFTTPASQSSTASGGFSFGGPSVQ 61

Query:   265 STTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSAT-- 322
             ++T+ +    F+ GE KP+ + S L +  S   K+  +SG++F+   +    P S+ T  
Sbjct:    62 TSTSLT---GFSFGESKPAAANSSLGNQPSDASKQPVFSGFSFNTSTA-TIKPTSNITFG 117

Query:   323 NKFTLGKSRASFLDSLNVPRASSGTLFE--QTEPERXXXXXXXXXXXXXXXXXXPAQNPS 380
             +  +   S  +   +  +P +S+G       T+                     PA N  
Sbjct:   118 SNLSANSSFTAISTNAGIPASSAGGFSAPGSTKFSLSTPNSGFSLPALSTGVSLPASNVG 177

Query:   381 --MEKETTG-------AFSKTTTSNIPSAFDYLGNPTVSTS 412
               +   TTG        FS  ++S  P  F++ G P  STS
Sbjct:   178 FGLPASTTGFSLPASTGFSAGSSSQ-PGGFNF-GTPASSTS 216

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0031453 "positive regulation of heterochromatin assembly" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS

GO:0045947 "negative regulation of translational initiation" evidence=ISS

GO:0046832 "negative regulation of RNA export from nucleus" evidence=ISS

GO:0031647 "regulation of protein stability" evidence=ISS

ZFIN|ZDB-GENE-080618-2 prdm1b "PR domain containing 1b, with ZNF domain" [Danio rerio (taxid:7955)]

 Score = 122 (48.0 bits), Expect = 0.00052, P = 0.00052
 Identities = 72/338 (21%), Positives = 132/338 (39%)

Query:    19 SSVSQPQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLA 78
             S +S+P+++D S+H+   L   +  V  +  +  S  P     S+P V  + D + L  +
Sbjct:    23 SYISRPESTDSSIHESSSLFIPKSPVFSIPESSFSSDPQNPTASIPQVSSSSDPQ-LSTS 81

Query:    79 QQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNND 138
                +    S  +I+++      ++S   ++ T S  Q  S S   ++ S+  ++  V+  
Sbjct:    82 SIPESSFSSGPQISTSSIPQSTSTSVPQIS-TSSIPQSASTSVSQISTSSVPDSSSVSVP 140

Query:   139 FVIYSS--GQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEESQSK-GNDSFPK 195
              +  SS        D  +S    SL+PE               Q    S  +    S P+
Sbjct:   141 QIFISSVPQSSSSSDPQIST---SLIPEFSSSSDPQIFTSSILQSTSTSVPQISTSSIPQ 197

Query:   196 -----VPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTT 250
                  VP +  S       T + PQ S S++ Q   S+   +       SSS     ++T
Sbjct:   198 SSSSSVPQISTSSIHQSSPTSV-PQMSTSSIPQGSSSSVPQISTSSIPQSSSSSVPQIST 256

Query:   251 STGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSN---SASGLASLQSTPFKRSEYSGYNF 307
             S+   +S   +   ST++     S +  +   S+   S++      STP      S Y  
Sbjct:   257 SSIPQSSPTSVPQISTSSIPQGSSSSVPQISISSIPQSSTNSVPHSSTPLVHESSSSYIP 316

Query:   308 DAGNSFNHVPVSSATNKFTLGKSRASFLDS-LNVPRAS 344
              +  S  H    S  +  T+ +S ++  +S  N+P  S
Sbjct:   317 QSSTSTMH---DSFNSDSTMTQSFSTNTNSAFNLPEDS 351

GO:0005737 "cytoplasm" evidence=IEA

GO:0018149 "peptide cross-linking" evidence=IEA

CGD|CAL0006203 orf19.4906 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 0.00092, Sum P(2) = 0.00092
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   180 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 238
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   239 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 297
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   298 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 357
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   358 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 417
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   418 RRLGSNESSIENQHGFYST 436
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

UNIPROTKB|Q5APQ2 CaO19.4906 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 0.00092, Sum P(2) = 0.00092
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   180 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 238
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   239 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 297
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   298 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 357
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   358 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 417
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   418 RRLGSNESSIENQHGFYST 436
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|I3LRD3 CENPE "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 0.00094, P = 0.00094
 Identities = 65/289 (22%), Positives = 122/289 (42%)

Query:   492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551
             ++L  ++++  EEIK    E +  +     +++EC+   E  +   ++ I  EE+ L++ 
Sbjct:  1340 HRLTEKLQESHEEIKTITKERDDLKVTKEALQIECDQLKEEIRETLAKHIETEEE-LKVV 1398

Query:   552 SNELKLERQLENXXXXXXXXXXXXXXXXXXRQDFQSTIEALQEEKKMMQSKLRKASGSGK 611
                LK E++ E                   +Q+ + T + LQ++ + ++ K  +   S K
Sbjct:  1399 RGHLK-EKE-ETISKLTVDLSEKATELSSIQQELEMTNDELQKKTQELREKQEQLI-SIK 1455

Query:   612 SIDFGKXXXXXXXXXXXXEDLAITDTTLDNSNQDTHDDAS-LPRIDASGSTLLPESGRLA 670
              I   +            E L   D +L  +  +    A  L        T++ E   L 
Sbjct:  1456 EIS--ETQGKMSELEELKEHLKAKDASLQRTESERLSLAEKLQTSQEEVKTIIKERDELQ 1513

Query:   671 LEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSS-KLKDLNNELSRKLE 729
                 A+    DQ+R   NI  L++E+   +EE  Q    +++++  KL+++ N L ++LE
Sbjct:  1514 RAQEALQKERDQLR--ENIXELVAEIQELQEEEHQLKMKDVSETQEKLREIEN-LKKQLE 1570

Query:   730 HQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEV--VERVL 776
              Q   LE     N   ENI   Q    +  + T+   E D++  VE  L
Sbjct:  1571 AQKSTLE-----NTEMENIRLTQRLHENLEEITSVTKERDDLRSVEETL 1614

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0043515 "kinetochore binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_302959.1 annotation not avaliable (728 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	796
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	2e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	3e-05
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	5e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	8e-05
pfam04156	186	pfam04156, IncA, IncA protein	1e-04
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
pfam13166	713	pfam13166, AAA_13, AAA domain	0.001
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	0.002
PRK10929	1109	PRK10929, PRK10929, putative mechanosensitive chan	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.9 bits (161), Expect = 6e-11
 Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 3/196 (1%)

Query: 414 RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQ---HIEDLTQEKFALQRSLEASRALS 470
              +  L      +E Q      +       LEQ    +E+L +E   L+  LE  +   
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760

Query: 471 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 530
           E L  E  SL ++  + +  + +L+ + + LQEE++    ELE        +  E  + +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 531 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 590
           +R + L  E+  LEE+   L     +LE +LE  + E+   K+++  LE E+++ +  ++
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880

Query: 591 ALQEEKKMMQSKLRKA 606
            L+EEK+ ++ +LR+ 
Sbjct: 881 ELEEEKEELEEELREL 896

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.6 bits (155), Expect = 3e-10
 Identities = 45/166 (27%), Positives = 81/166 (48%)

Query: 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 498
                 LE+ ++ L  E  +L+  LE  R   E L  +   L          + QL+S +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 499 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 558
           E+L+EE++    ELE  +     +  E  + +E    L  E+  LEEK   L+    +LE
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799

Query: 559 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604
            +LE ++  + + ++++ SLE+ R+  +  IE L+EE + ++ KL 
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 67/344 (19%), Positives = 136/344 (39%), Gaps = 34/344 (9%)

Query: 414  RGDIRRLGSNESSIENQHGFYSTKH---NEDFAALEQHIEDLTQEKFALQRSLEASRALS 470
               I  L    + +E        +     E+   L + +E+L+++  AL++ L    A  
Sbjct: 683  EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 471  ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 530
            E L    + L+    +  + + +L+  +E+ +EE+     E+E    +   ++ E  A  
Sbjct: 743  EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

Query: 531  ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 590
            E    L +E+  L E+A  LR     LER++  ++  +   +++I  L ++ +   + IE
Sbjct: 803  EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862

Query: 591  ALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD-D 649
             L+E  + ++S+L        S++                +L      L        +  
Sbjct: 863  ELEELIEELESELEALLNERASLEEALALLR--------SELEELSEELRELESKRSELR 914

Query: 650  ASLPRIDASGSTLLPESGRLALEGLAVNIPH--DQMRMIHNINALISELALEKEELVQAL 707
              L  +    + L      L LEGL V I +  +++   +++     E A   E  ++  
Sbjct: 915  RELEELREKLAQL-----ELRLEGLEVRIDNLQERLSEEYSLTL---EEAEALENKIEDD 966

Query: 708  SSELAQSSKLKDLNNELSR----------KLEHQTQRLELLTAQ 741
              E  +  +LK L N++            + E   +R + LTAQ
Sbjct: 967  EEEARR--RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.8 bits (153), Expect = 6e-10
 Identities = 60/314 (19%), Positives = 124/314 (39%), Gaps = 12/314 (3%)

Query: 445 LEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEK 500
           LE+ +E L ++    +R  E    L E     L A+   L     +    +++L+ E+E+
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 501 LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 560
           LQEE++    E+E  ++E   +R E     E    L  E+  LE +   LR    +LE +
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 561 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAA 620
           LE  +  +   K+KI +L++E ++ ++ +E L++    ++    +     + +       
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE---EKLSALLEEL 374

Query: 621 STVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPH 680
             +  +   E   +     +  N+       +  ++     L      L  E   +    
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 681 DQMRM-IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-QTQRLELL 738
           ++++  +  +N  + EL  + EEL   L        +L +L  EL R  +   +    L 
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLK---ELERELAELQEELQRLEKELSSLEARLD 491

Query: 739 TAQNMANENISFRQ 752
             +     +   R 
Sbjct: 492 RLEAEQRASQGVRA 505

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.4 bits (152), Expect = 8e-10
 Identities = 42/167 (25%), Positives = 83/167 (49%)

Query: 442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 501
             +LE  +E+L ++   L+R LE  +    +L  E   L     +    + +L+ E+E+L
Sbjct: 697 LRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEEL 756

Query: 502 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL 561
           QE ++    ELES     A ++ E    +E+ + L  E+  LEE+          LER+L
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816

Query: 562 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 608
           E+ +      +++I  LE+E ++ +  ++ L+EE + ++ +L +   
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.3 bits (149), Expect = 2e-09
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 496
              E  A L++ IE+L +++ ALQ  LE      E       +L            +L+ 
Sbjct: 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828

Query: 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 556
           E+E+L+EEI+    ELE           + +  +E  + L  E+  L+E+   L + + +
Sbjct: 829 EIEELEEEIE----ELEE----------KLDELEEELEELEKELEELKEELEELEAEKEE 874

Query: 557 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605
           LE +L+  + E    ++++  LE E  + +  IE L+E  + +++KL +
Sbjct: 875 LEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 56/301 (18%), Positives = 111/301 (36%), Gaps = 43/301 (14%)

Query: 438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 497
             E+   L++ +++  +E   L   L+      E L  E S L +   + +  +  L +E
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 498 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL 557
           + +L+++ ++    L +   +     LE    +  +K        L+E A  L   E KL
Sbjct: 297 ISRLEQQKQILRERLANLERQLE--ELEAQLEELESK--------LDELAEELAELEEKL 346

Query: 558 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGK 617
           E   E  +S     + ++  LE E ++ +S +E L+E+ + ++SK+ +      S+    
Sbjct: 347 EELKEELESL----EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL---- 398

Query: 618 TAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVN 677
                       E L                +    R+      LL +     L+ L   
Sbjct: 399 -NNEIERLEARLERL----------------EDRRERLQQEIEELLKKLEEAELKELQAE 441

Query: 678 IPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 737
           +          +   + EL  E E L +AL     +  + +   +   R+L     RL+ 
Sbjct: 442 LE--------ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493

Query: 738 L 738
           L
Sbjct: 494 L 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.1 bits (146), Expect = 4e-09
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 18/189 (9%)

Query: 436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQR 488
           ++  E+   L++ +E+  +E   L+  LE  R   E L  E   L +            R
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308

Query: 489 SVVNQLKSEMEKLQEEIKVQLVELESFRN----------EYANVRLECNAADERAKILAS 538
             + +L++E+E+L+E ++    ++E+ +           E   +  E   A E  +   S
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 539 EVI-GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 597
            ++  LEE    LR    +LE +L   ++E+   K++I SLE+  +     +E L+EE K
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 598 MMQSKLRKA 606
            ++++L + 
Sbjct: 429 ELEAELEEL 437

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 460 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 519
           +RS  A +   + L  E + L     +    +  LK+E+  L++ ++    +LE    + 
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 579
             ++ E  A +E  + L S +  LEE+   L     +L+ +LE  + E+ S ++ ++ L+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 580 KE-------RQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 613
           +E       RQ  Q  +E L+EE +  + +L       +S+
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL 819

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 39/193 (20%), Positives = 83/193 (43%)

Query: 416 DIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 475
           +I  L    S +  +      +  E    LE+  E +   K  L+        L + LA 
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 476 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 535
              +  +   +  +++ +L+   E L+EE+     EL   RNE   ++ E  + +ER + 
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 536 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 595
           L+  +  L+E+   L +   +L+ +LE    E+   ++++  L    ++ +  +  LQEE
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475

Query: 596 KKMMQSKLRKASG 608
            + ++ +L     
Sbjct: 476 LQRLEKELSSLEA 488

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 37/165 (22%), Positives = 74/165 (44%)

Query: 443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 502
           A LE  I+ L  E   L+R +E  R   + L  E + L +     R+ + ++  E  + +
Sbjct: 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384

Query: 503 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 562
           +E+K    +LE  + E   ++ E +   E  + L+ E+  L      + +   +LE + E
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 563 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607
           +   EI   + K+  L  +   ++  +  L+EE   ++ +L K  
Sbjct: 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.2 bits (136), Expect = 6e-08
 Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 2/168 (1%)

Query: 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 499
           ED ++LEQ IE++  E   L+  +E        L    + L    +  R  + ++++E+ 
Sbjct: 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELS 801

Query: 500 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 559
           KL+EE+      L     +   + LE    ++  + L  + I L+E+   +      L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607
           + E  + E+   +  +  LE    D +   + L+ + + ++ K+ +  
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.8 bits (135), Expect = 8e-08
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEME 499
             A+LE+ +E LT+E   L++ LE    L E L  +   L  +   + +  + +L++E+ 
Sbjct: 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304

Query: 500 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS--NELK- 556
            L+  I  +  ELE      A +  E +      + L  E   +EE+  R      E   
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE---IEEERKRRDKLTEEYAE 361

Query: 557 LERQLENSQSEI--------------SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 602
           L+ +LE+ ++E+                Y++K+  L++E  + +  ++ LQEE + +  +
Sbjct: 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

Query: 603 LR 604
           L 
Sbjct: 422 LA 423

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 14/170 (8%)

Query: 440 EDFAALEQHIED-------LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN 492
            +   LE+ IE+       LT+E   L+  LE  RA  E +  E +   D     R  + 
Sbjct: 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395

Query: 493 QLKSEME-------KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 545
           +LK E+        +LQEE++    EL       A +  + N  +E  +  A E+   E 
Sbjct: 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455

Query: 546 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 595
           K  +L ++  K E++L + + E    +K++S L++E  + ++   A +E 
Sbjct: 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 60/319 (18%), Positives = 112/319 (35%), Gaps = 24/319 (7%)

Query: 436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL- 494
               E  A LE+  E L + K  L           +    E   L     +    + +L 
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294

Query: 495 -----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 549
                  E+E+  E ++  L ELE    +  ++       +E+ + L SE   LEE A  
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE---LEELAEE 351

Query: 550 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 609
                  LE +L+  +  +   +K++    +  +  +  I+ L+EE   + + L +    
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI--- 408

Query: 610 GKSIDFGKTAASTVNASTS--TEDLAITDTTLDNSNQDTHDDASLPRIDAS----GSTLL 663
            + ++  +     +        E++   +  ++         A L          G  L 
Sbjct: 409 QEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELP 468

Query: 664 PESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKL----KD 719
            E  +  LE   + +   +  +  +     +EL  E EEL + L     +  +L    + 
Sbjct: 469 EEHEKELLELYELELEELEEEL--SREKEEAELREEIEELEKELRELEEELIELLELEEA 526

Query: 720 LNNELSRKLEHQTQRLELL 738
           L  EL  KLE     LE L
Sbjct: 527 LKEELEEKLEKLENLLEEL 545

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 27/216 (12%)

Query: 414  RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESL 473
              ++        ++E +      +       LEQ IE+L +E   L+  L+      E L
Sbjct: 799  EEELEEAERRLDALERELESLEQRRER----LEQEIEELEEEIEELEEKLDELEEELEEL 854

Query: 474  AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELESFRNEY----ANVRLEC 526
              E   L +   +  +   +L+ E+++L+EE +    +L ELES   E       +R   
Sbjct: 855  EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914

Query: 527  NAADERAKILASEVIGLEEKALRLRSNEL--KLERQLENSQSEISSY------------- 571
               + + + L  E+  LEE+      + L  +LER++E  + EI +              
Sbjct: 915  EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEE 974

Query: 572  -KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
             +++   L+ +R+D +   E L E  + +  + R+ 
Sbjct: 975  VEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 11/173 (6%)

Query: 436 TKHNEDFAALEQHIEDLTQEKFALQRSL----EASRALSESLAAENSSLTDSYNQQRSVV 491
            +       LEQ + +L + K  L+  L    E    L E+L  E + L     + R+ +
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551
            +LK E+E L+E ++     LE  + E   +  E        + L  E+  LEE+   LR
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459

Query: 552 SNELKLER-------QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 597
               +LER       +L+  + E+SS + ++  LE E++  Q     L+  + 
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 53.1 bits (128), Expect = 5e-07
 Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 22/201 (10%)

Query: 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 496
           K  E++  L++ +  L  E  +L++ LE    L + LA     L +   +   ++ +L+ 
Sbjct: 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581

Query: 497 EMEKLQEEIKVQLVELESFRNEY---ANVRLECNAADERAKILASEV------IGLEEKA 547
              +  EE++ +L ELE F NEY    +   E    ++  K L  E+      +   EK 
Sbjct: 582 LGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641

Query: 548 LRLRSNEL-------------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 594
           L     EL             +L  +      E++  + ++  LEK R++ + T+E L+E
Sbjct: 642 LEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701

Query: 595 EKKMMQSKLRKASGSGKSIDF 615
           E +  +   ++     K+++ 
Sbjct: 702 ELEEREKAKKELEKLEKALER 722

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.6 bits (124), Expect = 2e-06
 Identities = 27/159 (16%), Positives = 63/159 (39%)

Query: 446 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 505
            + IE+L ++   L+  +         L  E   L +   Q R  + +L  ++  L++++
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 506 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 565
                E+E      A +  E    +   + L   +   EE+     +   +LE Q+E  +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 566 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604
            E+ + ++ +  L  E          L+E  + ++ ++ 
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 82/435 (18%), Positives = 153/435 (35%), Gaps = 62/435 (14%)

Query: 180 QGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFH 239
           +   E+ SKG  S  ++  + NSG +H      S  +    L  S+        + H  H
Sbjct: 214 KEKSEASSKGLTSTKELVPVQNSGGNHS--LSKSSNSQTPELEYSEKGKDHHHSHNHQHH 271

Query: 240 SSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKR 299
           S      H   +       + +   + +N S P S +T   K + S S  A+  S   K 
Sbjct: 272 SIGINNHHSKHADSKL-QTIEVIE-NHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKS 329

Query: 300 SEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSF 359
           S+                 S+  +      S      S N    SS     +++ +R S 
Sbjct: 330 SK-----------------SAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASK 372

Query: 360 MSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRR 419
            SS + +S        A             S       PSA + L           DI++
Sbjct: 373 SSSGARDSKKDASGMSANGTVENCIPENKIST------PSAIERL---------EQDIKK 417

Query: 420 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 479
           L +                 ++ + L   I  LT  + +L+  L   +  ++ L  + +S
Sbjct: 418 LQAELQQ-----------ARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNS 466

Query: 480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 539
           +  +  + +  +  ++   ++L+ E   + V  E    E    + E      RA   A+ 
Sbjct: 467 MVSAKQKDKQSMQSME---KRLKSEADSR-VNAEKQLAEEKKRKKEEEETAARAAAQAAA 522

Query: 540 VIGLEEKALRLRSNEL-----KLERQLENSQSEISSYKKKISSL------EKERQDFQST 588
                 ++L+    +L     KLE  L+  + E    +K+   L      EKE +   S 
Sbjct: 523 SREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKETEVLMSA 582

Query: 589 IEALQEEKKMMQSKL 603
           ++A+Q++  M+++ L
Sbjct: 583 LQAMQDKNLMLENSL 597

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.3 bits (118), Expect = 8e-06
 Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 29/197 (14%)

Query: 439 NEDFAALEQHIEDLTQ-EKFALQR---SLEASRALSE-SLAAENSSLTDSYNQQR---SV 490
            +    L + I+DL + E+  ++     LEA  A  E S+A +   L D+  +     + 
Sbjct: 271 EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330

Query: 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550
           +++L +E+E+L+ EI+ +    +    EYA ++ E          L +E+  ++++    
Sbjct: 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED-------LRAELEEVDKEFAET 383

Query: 551 RSNELKLERQLENSQSEISSYKKKISSLEKERQ--------------DFQSTIEALQEEK 596
           R        +LE  + EI+  K+++  L++E Q                ++ I  L+EEK
Sbjct: 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443

Query: 597 KMMQSKLRKASGSGKSI 613
           +    +++K     + +
Sbjct: 444 EDKALEIKKQEWKLEQL 460

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 1e-05
 Identities = 44/253 (17%), Positives = 104/253 (41%), Gaps = 11/253 (4%)

Query: 493 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552
           +L+ ++E+L+E+I      L   R E   +  E     +  + L+ ++  L +   RL +
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 553 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 612
              +LE ++     E++  + +I  LE+  ++ +  +   + E + +++++ +     K+
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800

Query: 613 IDFGKTAASTVNASTSTEDLAITDTTLD-NSNQDTHDDASLPRIDASGSTLLPESGRLAL 671
           +   + A   + A  +  +    +      S +           D        E     +
Sbjct: 801 L---REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI---EELSEDI 854

Query: 672 EGLAVNIPH--DQMRMIHN-INALISELALEKEELVQALSSELAQSSKLKDLNNELSRKL 728
           E LA  I    + +  + + + AL++E A  +E L    S     S +L++L ++   +L
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR-SEL 913

Query: 729 EHQTQRLELLTAQ 741
             + + L    AQ
Sbjct: 914 RRELEELREKLAQ 926

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 48.8 bits (117), Expect = 1e-05
 Identities = 61/311 (19%), Positives = 123/311 (39%), Gaps = 60/311 (19%)

Query: 450 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 509
           + L  E   +Q+ LE + AL + +  +         QQ   + Q  +++ + Q E++   
Sbjct: 52  KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQ-LKQQ---LAQAPAKLRQAQAELE--- 104

Query: 510 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER---QLENSQS 566
                         L+ +  +E  + L++         L LR  E +L +   QL+N+Q+
Sbjct: 105 -------------ALKDDNDEETRETLST---------LSLRQLESRLAQTLDQLQNAQN 142

Query: 567 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNAS 626
           +++ Y  ++ SL+ + +  Q+ + A    +++ Q +     G        K     +  S
Sbjct: 143 DLAEYNSQLVSLQTQPERAQAALYANS--QRLQQIRNLLKGG--------KVGGKALRPS 192

Query: 627 TSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMI 686
                L      L+  N        L R    G+T L +  +   + L   I   +   +
Sbjct: 193 QRVL-LQAEQALLNAQN-------DLQRKSLEGNTQLQDLLQKQRDYLTARIQRLE-HQL 243

Query: 687 HNINALISE--LALEKEELVQALSSELAQSSKLKDL-------NNELSRKLEHQTQRLEL 737
             +   I+   L L ++ + +A S + A   +   L       N +LS++L   T++L  
Sbjct: 244 QLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNT 303

Query: 738 LTAQNMANENI 748
           LT QN+  +N 
Sbjct: 304 LTQQNLRVKNW 314

Length = 1113

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 417 IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 476
           I+ LG  E  +  +      +   + A+LE+ I +  +E    +  L    A  + L AE
Sbjct: 281 IKDLGEEEQ-LRVKEKIGELE--AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337

Query: 477 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 536
              L     ++R   ++L  E  +L+EE++    ELE    E+A  R E     E+ + L
Sbjct: 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397

Query: 537 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 596
             E+  L+ +  RL+    +L  +L +  + I+  + KI+ LE+E++D    I+  + + 
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 597 KMMQSKLRKAS 607
           + + + L K  
Sbjct: 458 EQLAADLSKYE 468

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 463 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 522
           L++  A+ + L  E   L     + R  + + K+E+E L + ++   +ELE   N+ +  
Sbjct: 6   LKSLLAIQK-LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS-- 62

Query: 523 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 582
           +LE    + R +I          K    + + +K ER+L     EI   K++I+SLE E 
Sbjct: 63  QLESEIQEIRERI----------KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112

Query: 583 QDFQSTIEALQEEKKMMQSKLRK 605
            +    IE L++E + ++ +L +
Sbjct: 113 AELMEEIEKLEKEIEDLKERLER 135

Length = 239

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 446 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 505
           E   E+  +E    ++ ++      E L  ENS L     + +  + +L+SE+E+ + E+
Sbjct: 407 EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466

Query: 506 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 565
           + ++ +             E  A D R + L  E   LEEK  R+   E KL    +  +
Sbjct: 467 RDKVRK-----------DREIRARDRRIERLEKE---LEEKKKRVEELERKLAELRKMRK 512

Query: 566 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK---LRKASGSGKSI 613
            E+S     +  +EK   +    IE  +EE  + +     +   SG G   
Sbjct: 513 LELSGKGTPVKVVEKLTLE---AIEEAEEEYGIKEGDVILVEDPSGGGART 560

Length = 652

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 37/209 (17%), Positives = 87/209 (41%), Gaps = 43/209 (20%)

Query: 410 STSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIED----LTQEKFALQRSLEA 465
           +T    D   L S    +E +            A  +  IE     L+ E  A+   ++ 
Sbjct: 76  ATDVEADAAELESQVLRLEAEVARLRA-----EADSQAAIEFPDDLLSAEDPAVPELIKG 130

Query: 466 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 525
            ++L     +  S+L       R+ +  + +++++L+ E+     +L++ R         
Sbjct: 131 QQSL---FESRKSTL-------RAQLELILAQIKQLEAELAGLQAQLQALR--------- 171

Query: 526 CNAADERAKILASEVIG---LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE- 581
                ++ ++++ E+     L+EK L  R   L+LER+   +Q E+   + ++  L+++ 
Sbjct: 172 -----QQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQI 226

Query: 582 ---RQDFQSTIEALQEEKKMMQSKLRKAS 607
              + + Q   +  +EE   +  +L +A 
Sbjct: 227 DELQLERQQIEQTFREE---VLEELTEAQ 252

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 496
              E+   LE+ +E+  +   AL+R LE+     E L  E   L +   +       L+ 
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE-------LEE 842

Query: 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 556
           ++++L+EE+       E    E   ++ E    +   + L  E+  LEE+   L     +
Sbjct: 843 KLDELEEEL-------EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 557 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 597
           LE +L   + EI   ++++  LE + +  +  +  L+EE +
Sbjct: 896 LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 12/112 (10%)

Query: 484 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 543
           + ++  ++ Q + E+EK +EE++  L++ + F  E    R     A+++A+         
Sbjct: 23  FERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR---RRAEKKAEE-------- 71

Query: 544 EEKALRLRSNELK-LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 594
           E+K  + +  E+K L+ +LE  ++EI   ++K+   +   +  +S +E   E
Sbjct: 72  EKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQPYEEFLESVVERSPE 123

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 8e-05
 Identities = 30/169 (17%), Positives = 74/169 (43%), Gaps = 1/169 (0%)

Query: 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 496
           K  E+ + +E  + ++ Q+   L    E      + L  +   L +        +  L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 556
           + E+L+EE++     L    +   +++ E +  + + + L  ++  LE +  + R    +
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921

Query: 557 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605
           L+ +LE  + E+S  +      E+  ++  S +E +Q E + ++ ++R 
Sbjct: 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 46.1 bits (110), Expect = 8e-05
 Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 26/172 (15%)

Query: 440  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 495
            +D+   +Q   D  Q+ FAL    QR    S   +  + A+NS L +   Q+      L+
Sbjct: 942  QDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQR------LE 995

Query: 496  SEMEKLQEEIKVQLVELESFRNEYANVRL----ECNAADERAKILASEV--------IGL 543
             + E+ +   + QL + ++   +Y  V        +A  +  + L  E+         G 
Sbjct: 996  -QAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGA 1054

Query: 544  EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 595
            EE+A R R +EL    +L  ++S  +  +K+++  E E  +    +  L+ +
Sbjct: 1055 EERA-RARRDEL--HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERD 1103

Length = 1486

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 518
           L           + L      L++   Q    +++L+ E+E L+E I     ELE  + +
Sbjct: 60  LLLKAPVQSVRPQKLEELQGELSELKQQ----LSELQEELEDLEERIAELESELEDLKED 115

Query: 519 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 578
              +R    + +ER + L   +  L ++   LR     L  ++E  + E+   ++ +  L
Sbjct: 116 LQLLRELLKSLEERLESLEESIKELAKELRELRQ---DLREEVEELREELERLQENLQRL 172

Query: 579 EKERQDFQSTIE 590
           ++  Q+ QS +E
Sbjct: 173 QEAIQELQSLLE 184

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 440  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 495
            ED+A  +Q      Q+ FAL    QR    S + S  + +ENS L +   + R  + Q +
Sbjct: 941  EDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNE---KLRQRLEQAE 997

Query: 496  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI--------GLEEKA 547
            +E  + +E+++    +L  +    A+++   +   E    L  E+         G EE+A
Sbjct: 998  AERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERA 1057

Query: 548  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607
             R+R +EL    QL  ++S  +  +K+++  E E  +    +  L+ +   M+ ++  A 
Sbjct: 1058 -RIRRDEL--HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAK 1114

Query: 608  GS 609
              
Sbjct: 1115 AG 1116

Length = 1480

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 435 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 494
           S     +   L + +E L +E  +LQ  L       + L+ E S  +    +    + QL
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728

Query: 495 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 554
           + E EKL+E ++    +L S   E  NV+ E        K L + +  LEE   +L    
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSE-------LKELEARIEELEEDLHKLEEAL 781

Query: 555 LKLER-----QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 602
             LE      ++   Q+E+S  ++++S +E   ++ +  +  L  EK+ ++ +
Sbjct: 782 NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 42/318 (13%)

Query: 493 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 552
              +E+++L+E ++    EL S ++E   +    +   +     + ++  +E++  +L  
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 553 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR--KASGSG 610
            E KL+ +LE  + ++SS +++I +++ E ++ ++ IE L+E+   ++  L   +A  S 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 611 KSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA 670
             I   +   S +    S  +  + +            +  L R      TL  E     
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREI-----------EQKLNR-----LTLEKEYLEKE 834

Query: 671 LEGLAVNIPHDQMRM------IHNINALISELALEKEEL---VQALSSEL---------- 711
           ++ L       + ++      I N+N    EL  E EEL   ++ L S L          
Sbjct: 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894

Query: 712 -AQSSKLKDLNNELSRKLEHQTQRLELLTA--QNMANENISFRQPDSASTHDHTAYADEG 768
            AQ  +L+    EL  ++E + +RL  L A  + +  E      P               
Sbjct: 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954

Query: 769 D--EVVERVLGWIMKLFP 784
           D    ++RV   I  L P
Sbjct: 955 DVQAELQRVEEEIRALEP 972

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 443  AALEQHIEDLTQEKFALQRSLE----ASRALSES---LAAENSSLTDSYNQQRSVVNQLK 495
             ++E+ IE+L  +K  L+  LE    A R L      L  E   L     +    + +L+
Sbjct: 850  KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

Query: 496  SEMEKLQEEIKVQLVELESFRNEYANVR------LECNAADERAKILASEVIGLEEKALR 549
            +++EK ++ +     +LE+   E + +        E    +   + + +E+  +EE+   
Sbjct: 910  AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969

Query: 550  LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 597
            L    +   ++ E     +   K+K + LE+ER+     IE  +++K+
Sbjct: 970  LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 21/187 (11%)

Query: 440 EDFAALEQHIEDLTQ-------EKFALQRSLEASRALSESLAAENSSLTDSY---NQQRS 489
           E+   LE  IEDL +       E+  L   +   R   E L  E   L       +    
Sbjct: 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAE 310

Query: 490 VVNQLKSEMEK----LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 545
            V   + E+E     L++ ++   V  ++   E  ++R + +  +ERA+        L E
Sbjct: 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE-------ELRE 363

Query: 546 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605
           +A  L S   +    +E+ + EI   +++I  L +   D    +   ++  + ++ +  +
Sbjct: 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423

Query: 606 ASGSGKS 612
                  
Sbjct: 424 LREREAE 430

Length = 880

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 497 EMEKLQEEIKVQLVELESFRNEYANVRLE-----CNAADERAKILASEVIGLEEKALRLR 551
           E E+ Q+E++ ++ ++E      A   LE         +E+ K    E   LE+KA  L 
Sbjct: 2   EAEREQQELEERMEQMEE-DMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELE 60

Query: 552 SNELKLERQLENS-------QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604
               +LE +   S       ++E+     +++ LE+ER+  ++    LQ+E +  Q    
Sbjct: 61  EENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHE 120

Query: 605 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRID 656
           +A           TA   V A  + E L   D   + S  D   D  +    
Sbjct: 121 RARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEAS-ADLETDPDMKDRS 171

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 8e-04
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 18/251 (7%)

Query: 516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 575
           R E   +  +    +E+   L   +  L ++   L     +L ++LE    +IS+ +K +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 576 SSLEKERQ-------DFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTS 628
           + LE E +            +  L+ E + ++ +L +A       +              
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-IEQL 794

Query: 629 TEDLAITDTTLDNSN---QDTHDDASLPRIDASGSTLLPESGRLALEGLA---VNIPHDQ 682
            E+L      LD         +++A+  R           +    LE L      +  D 
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 683 MRMIHNINAL---ISELALEKEELVQALSSELAQSSKLKDLNNELSRKL-EHQTQRLELL 738
             +   I  L   I EL  E E L+   +S     + L+    ELS +L E +++R EL 
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 739 TAQNMANENIS 749
                  E ++
Sbjct: 915 RELEELREKLA 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 417 IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 476
            ++L   E  +            E    LE+ +++L  E F     LE   A  E    E
Sbjct: 562 EKKLDELEEELAELLKELEELGFESVEELEERLKEL--EPF-YNEYLELKDAEKELEREE 618

Query: 477 NS--SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN--EYANVRLECNAADER 532
                L +  ++    + + +  +E+L++E++    ELE   +  EY  +R E       
Sbjct: 619 KELKKLEEELDKAFEELAETEKRLEELRKELE----ELEKKYSEEEYEELREEYLELSRE 674

Query: 533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592
              L +E+  LE++   ++    KL+ +LE    E    KK++  LEK  +  +   E +
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKLKEELE----EREKAKKELEKLEKALERVEELREKV 730

Query: 593 QEEKKM 598
           ++ K +
Sbjct: 731 KKYKAL 736

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 42/252 (16%), Positives = 100/252 (39%), Gaps = 41/252 (16%)

Query: 487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 546
           Q+  + +L+ E+ +L+ +++    EL+S +NE  ++         + + L  ++  L+ +
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 547 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
              L     +L+ +LE  + E+   ++++  L++  ++ +  +E+L+E    ++ ++ + 
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784

Query: 607 SGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES 666
               +++                E+L   +  L+ + +          ++    +L    
Sbjct: 785 EEKRQAL---------------QEELEELEEELEEAERRLDA------LERELESLEQRR 823

Query: 667 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR 726
            RL  E                    I EL  E EEL + L     +  +L+    EL  
Sbjct: 824 ERLEQE--------------------IEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Query: 727 KLEHQTQRLELL 738
           +LE      E L
Sbjct: 864 ELEELEAEKEEL 875

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 29/188 (15%)

Query: 438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 497
             +      + +ED  QE   L+  LE  R L          L +   + +  + +L+  
Sbjct: 553 QLQQLKEELRQLEDRLQE---LKELLEELRLLRTRKEELEE-LRERLKELKKKLKELEER 608

Query: 498 MEKLQEEIKVQLV-----ELESFRNEYANVR--LECNAADERAKI------------LAS 538
           + +L+E ++   +     ELE    E  +    L   A  E                L +
Sbjct: 609 LSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEA 668

Query: 539 EVIGLEEKALRL------RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 592
           E+    ++               +LE +LE  + E+    KK+  +E+  ++ +S    L
Sbjct: 669 EIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAEL 728

Query: 593 QEEKKMMQ 600
           +E KK ++
Sbjct: 729 EELKKELE 736

Length = 908

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 36/201 (17%), Positives = 86/201 (42%), Gaps = 27/201 (13%)

Query: 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 498
           +E++  L + +E+L  +    +  +E +    ES+       ++        V +LK+ +
Sbjct: 277 DEEYQELIEQLEELIDK---YESHIEKALEELESILDTEKENSEFKLD----VEELKALL 329

Query: 499 EKLQEEIKV-------------QLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 545
           E L+E ++                +ELES  +   ++    +A +E  +    ++  L++
Sbjct: 330 EALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKK 389

Query: 546 KALRLRSNELKLERQLENS-QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 604
           +  + +    KL   L    + +I +Y+K+   LEK     +  I+ L+ E K ++ +++
Sbjct: 390 EKNKAKK---KLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIK 446

Query: 605 KASGSGKSIDFGKTAASTVNA 625
           +      +I   +  A  +N 
Sbjct: 447 ELEKQLTNI---EPTADEINK 464

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 30/204 (14%)

Query: 422 SNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE----- 476
           S E S E Q    ST   +D   L Q   +LT +   L+    A     E L A      
Sbjct: 604 SRELSPEQQLDILSTM--KDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQF 661

Query: 477 ------------NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 524
                         +      + R  +       ++L +E++    ELE  R E  ++  
Sbjct: 662 IDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELR---AELELHRKEILDL-F 717

Query: 525 ECNAADERAKILASEVIGLEEKALRLRSNELK-LERQLENSQS---EISSYKKKISSLEK 580
           +C  AD             EE+ L  R + L+ LE QLE   +   E+S+   +    E+
Sbjct: 718 DCGTADTEDAFRE---AAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEE 774

Query: 581 ERQDFQSTIEALQEEKKMMQSKLR 604
           E    +  I+AL EE + + +++ 
Sbjct: 775 ELALLEEAIDALDEEVEELHAQVA 798

Length = 984

>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 694 SELALEKEELVQALSSELAQS-SKLKDLNNELSRKLEHQTQRLELLTAQN--MANENISF 750
           +E ALE  EL+   S +L +S      +N ELS+ L  Q QR++L+ +Q    A++ +  
Sbjct: 239 AERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQV 298

Query: 751 RQ 752
           RQ
Sbjct: 299 RQ 300

Length = 1109

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.4 bits (98), Expect = 0.002
 Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 34/178 (19%)

Query: 418 RRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 477
           +RLG  E+ IE           +    L + I  L      L+R LE             
Sbjct: 495 KRLGLPENIIEEAKKLIGEDKEK----LNELIASLE----ELERELE------------- 533

Query: 478 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES-FRNEYANVRLECNAADERAKIL 536
                   Q+      L  E EKL+EE++ +  +L+            E   A + AK  
Sbjct: 534 --------QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585

Query: 537 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 594
           A E+I    K LR          +            K     EK+++  +   E L+ 
Sbjct: 586 ADEII----KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639

Length = 782

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 53/274 (19%), Positives = 108/274 (39%), Gaps = 40/274 (14%)

Query: 491 VNQLKSEMEKLQEEI--------KVQLVELESFRNEYANVRLECNAADERAKILASEVIG 542
           V +   + EK  EE+        ++ L+ ++  R +   +R E   A ER + L  E   
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLI-IDEKRQQLERLRREREKA-ERYQALLKE--- 219

Query: 543 LEEKALRLRSNELK-LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 601
             E        E + LERQ E  + +++S ++++  L +E  + +  +E +++  + +  
Sbjct: 220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279

Query: 602 KLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD-DASLPRIDASGS 660
           K+ K  G  + +   +             ++A  + ++    ++  D +  L +++A   
Sbjct: 280 KI-KDLGEEEQLRVKEKIGEL------EAEIASLERSIAEKERELEDAEERLAKLEAEID 332

Query: 661 TLLPESGRLALEGLAVNIPHDQMRMIHNINALIS-------------ELALEKEELVQAL 707
            LL E     +E L   I  ++ R                       E+  E  E    L
Sbjct: 333 KLLAE-----IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387

Query: 708 SSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 741
                +  KLK   NEL R+L+   + L+ L+ +
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	796
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.47
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.35
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.32
PRK02224	880	chromosome segregation protein; Provisional	98.29
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.26
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.05
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.01
PRK02224	880	chromosome segregation protein; Provisional	97.89
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.88
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.78
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.74
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.69
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.67
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.56
PRK11637	428	AmiB activator; Provisional	97.51
PRK03918	880	chromosome segregation protein; Provisional	97.38
PHA02562	562	46 endonuclease subunit; Provisional	97.29
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.25
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.24
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.22
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.17
PHA02562	562	46 endonuclease subunit; Provisional	97.17
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.16
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.13
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.11
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.08
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.08
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.02
PRK11637	428	AmiB activator; Provisional	97.01
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.97
PRK09039	343	hypothetical protein; Validated	96.9
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.88
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.84
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.83
PRK03918	880	chromosome segregation protein; Provisional	96.82
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.81
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.81
PRK04863	1486	mukB cell division protein MukB; Provisional	96.76
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.76
PRK04778	569	septation ring formation regulator EzrA; Provision	96.74
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.7
PRK04863	1486	mukB cell division protein MukB; Provisional	96.68
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.63
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.61
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.59
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.58
PRK09039	343	hypothetical protein; Validated	96.48
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.48
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.36
COG4372	499	Uncharacterized protein conserved in bacteria with	96.24
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.23
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	96.21
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.19
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.15
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.14
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.13
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.13
PRK10361	475	DNA recombination protein RmuC; Provisional	96.12
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.05
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.04
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.0
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.99
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.97
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.95
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.93
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	95.92
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.91
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.87
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.85
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	95.85
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.84
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.84
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.78
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.78
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.75
KOG4673	961	consensus Transcription factor TMF, TATA element m	95.72
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.7
PRK11281	1113	hypothetical protein; Provisional	95.6
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.57
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.57
PRK04778	569	septation ring formation regulator EzrA; Provision	95.52
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.51
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	95.5
PF13166	712	AAA_13: AAA domain	95.49
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.45
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.42
PF13514	1111	AAA_27: AAA domain	95.41
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.38
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.38
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.33
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	95.31
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.28
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.22
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.16
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	95.13
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	95.11
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.08
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.99
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	94.93
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	94.88
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.81
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	94.77
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	94.77
KOG0979	1072	consensus Structural maintenance of chromosome pro	94.67
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.6
cd07655	258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	94.55
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.53
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.52
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.38
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.34
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.31
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.3
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	94.3
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	94.18
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.15
PF13514	1111	AAA_27: AAA domain	94.08
cd07671	242	F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin	94.05
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	94.04
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.95
KOG1103	561	consensus Predicted coiled-coil protein [Function	93.94
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.67
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	93.67
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.67
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	93.63
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.55
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	93.39
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.39
PRK10476	346	multidrug resistance protein MdtN; Provisional	93.38
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.28
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	93.23
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.21
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.18
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.15
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	93.13
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.02
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.0
PRK01156	895	chromosome segregation protein; Provisional	92.79
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	92.64
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.48
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	92.42
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	92.39
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.37
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	92.37
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	92.35
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	92.27
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	92.14
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	92.01
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	92.0
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	91.97
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	91.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	91.86
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	91.86
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.82
PF05546	207	She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088	91.65
KOG4673	961	consensus Transcription factor TMF, TATA element m	91.62
COG4372	499	Uncharacterized protein conserved in bacteria with	91.58
PRK10929	1109	putative mechanosensitive channel protein; Provisi	91.57
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	91.51
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.5
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	91.49
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	91.45
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.39
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	91.37
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	91.35
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	91.19
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	91.12
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	90.93
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.88
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	90.85
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.81
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	90.72
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	90.72
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	90.71
COG4942	420	Membrane-bound metallopeptidase [Cell division and	90.67
KOG0249	916	consensus LAR-interacting protein and related prot	90.55
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	90.51
PRK10884	206	SH3 domain-containing protein; Provisional	90.38
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	90.35
PRK10884	206	SH3 domain-containing protein; Provisional	90.17
KOG0249	916	consensus LAR-interacting protein and related prot	90.12
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	90.08
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	90.04
PRK10929	1109	putative mechanosensitive channel protein; Provisi	89.81
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	89.78
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	89.76
PRK11281	1113	hypothetical protein; Provisional	89.63
PF04380	79	BMFP: Membrane fusogenic activity; InterPro: IPR00	89.55
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	89.5
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	89.48
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	89.47
PRK10246	1047	exonuclease subunit SbcC; Provisional	89.39
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	89.38
KOG0018	1141	consensus Structural maintenance of chromosome pro	89.35
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	89.3
PF13166	712	AAA_13: AAA domain	89.18
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	89.11
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.08
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.74
PRK10698	222	phage shock protein PspA; Provisional	88.68
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.68
KOG0964	1200	consensus Structural maintenance of chromosome pro	88.61
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	88.58
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.52
COG4477	570	EzrA Negative regulator of septation ring formatio	88.41
cd07680	258	F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin	88.31
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	88.26
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	88.22
PRK10476	346	multidrug resistance protein MdtN; Provisional	88.02
KOG0963	629	consensus Transcription factor/CCAAT displacement	87.97
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	87.94
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	87.85
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	87.84
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	87.81
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	87.61
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	87.55
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	87.37
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	87.22
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	87.13
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	87.05
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	86.96
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	86.83
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	86.77
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	86.69
PRK03598	331	putative efflux pump membrane fusion protein; Prov	86.65
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	86.58
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	86.56
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	86.5
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	85.96
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	85.92
cd07622	201	BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S	85.88
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	85.81
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	85.65
PRK10722	247	hypothetical protein; Provisional	85.64
cd07656	241	F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/A	85.48
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	85.45
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	85.39
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	85.36
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	85.13
TIGR02473	141	flagell_FliJ flagellar export protein FliJ. Member	85.12
PRK11519	719	tyrosine kinase; Provisional	85.07
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	84.94
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	84.93
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	84.85
PF13942	179	Lipoprotein_20: YfhG lipoprotein	84.75
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.58
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	84.5
PF15294	278	Leu_zip: Leucine zipper	84.37
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	84.37
KOG0971	1243	consensus Microtubule-associated protein dynactin	84.3
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	84.26
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	84.19
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	84.17
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	84.15
PRK10869	553	recombination and repair protein; Provisional	84.12
COG2433	652	Uncharacterized conserved protein [Function unknow	83.99
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	83.9
TIGR02231	525	conserved hypothetical protein. This family consis	83.89
TIGR02231	525	conserved hypothetical protein. This family consis	83.6
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	83.57
KOG0979	1072	consensus Structural maintenance of chromosome pro	83.5
KOG1962	216	consensus B-cell receptor-associated protein and r	83.5
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	83.07
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	82.84
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.59
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	82.57
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	82.45
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	82.28
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	82.16
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	81.95
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	81.94
cd09234	337	V_HD-PTP_like Protein-interacting V-domain of mamm	81.87
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	81.76
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	81.75
KOG0018	1141	consensus Structural maintenance of chromosome pro	81.43
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	81.14
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	81.1
cd07657	237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	81.08
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.99
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	80.8
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	80.58
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	80.38
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	80.35
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	80.33
PF14662	193	CCDC155: Coiled-coil region of CCDC155	80.24
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	80.09
PRK10698	222	phage shock protein PspA; Provisional	80.08

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.47  E-value=0.00017  Score=83.09  Aligned_cols=165  Identities=18%  Similarity=0.318  Sum_probs=76.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      .+...|++.++++..+--.+...+.....-.+++..+-..+..........+..++.++++++.++......++.+..+.
T Consensus       677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~  756 (1179)
T TIGR02168       677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL  756 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555444555444444444444444445555555555554444444444444444


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779          520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  599 (796)
                      ..+..++....++...+..++..|+.++..++...-.++.++..+..++..+..++..+..+...++..+..|+.+.+.+
T Consensus       757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l  836 (1179)
T TIGR02168       757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT  836 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444443333322223334444444444444444444444444444444444444444


Q ss_pred             HHHHH
Q 003779          600 QSKLR  604 (796)
Q Consensus       600 qSKLR  604 (796)
                      +.++.
T Consensus       837 ~~~~~  841 (1179)
T TIGR02168       837 ERRLE  841 (1179)
T ss_pred             HHHHH
Confidence            43333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.35  E-value=0.00038  Score=80.93  Aligned_cols=168  Identities=22%  Similarity=0.296  Sum_probs=115.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003779          439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  518 (796)
Q Consensus       439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  518 (796)
                      ..++..|+.-|+.|..+--.+...+.....-.+.|..+-..+.....+-...+..++.+++.+..++..-...+..+..+
T Consensus       673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~  752 (1164)
T TIGR02169       673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE  752 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888888888888887777777777777777777777777777777777666666555555666666


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH----h-hhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          519 YANVRLECNAADERAKILASEVIGLEEKALRLRSN----E-LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       519 rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~----e-LKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      ......++.....+...+..++..|+.++..+...    . -+.+.++..+..++..+..++..+..+...+...++.|+
T Consensus       753 ~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~  832 (1164)
T TIGR02169       753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE  832 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666665555544221    1 113445666777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhh
Q 003779          594 EEKKMMQSKLRKA  606 (796)
Q Consensus       594 EEKklLqSKLR~a  606 (796)
                      .+...++.++...
T Consensus       833 ~e~~~l~~~~~~l  845 (1164)
T TIGR02169       833 KEIQELQEQRIDL  845 (1164)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777666644

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.32  E-value=0.00032  Score=80.95  Aligned_cols=100  Identities=25%  Similarity=0.311  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      .+...|++.++++..+.-.+...++..+.-.+.+-.+-..+...++.....+..++.++++++.++......++.+..+.
T Consensus       684 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~  763 (1179)
T TIGR02168       684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI  763 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555544444444444444555555555555555555555544444444444444444


Q ss_pred             HHHHHhhhHHHHHHHHHHHH
Q 003779          520 ANVRLECNAADERAKILASE  539 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LAaE  539 (796)
                      +....+...+.+....+..+
T Consensus       764 ~~~~~~l~~~~~~~~~l~~~  783 (1179)
T TIGR02168       764 EELEERLEEAEEELAEAEAE  783 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.29  E-value=0.00082  Score=77.72  Aligned_cols=12  Identities=25%  Similarity=0.069  Sum_probs=6.3

Q ss_pred             CCccccCCCCcc
Q 003779          227 SNAIALGNGHSF  238 (796)
Q Consensus       227 sn~~~~~~g~s~  238 (796)
                      -|.|.-.||+|=
T Consensus        25 ~~~i~G~Ng~GK   36 (880)
T PRK02224         25 VTVIHGVNGSGK   36 (880)
T ss_pred             eEEEECCCCCCH
Confidence            355555555554

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.26  E-value=0.003  Score=73.64  Aligned_cols=47  Identities=15%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  486 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq  486 (796)
                      .++..++..+++++.+.-.+...++....-.+.+-.+-..+...++.
T Consensus       237 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  283 (1164)
T TIGR02169       237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD  283 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555666667777777777777777666666666666666666666

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.05  E-value=0.0062  Score=73.84  Aligned_cols=56  Identities=25%  Similarity=0.429  Sum_probs=25.8

Q ss_pred             HHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          549 RLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       549 qLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      .++.....++..+..++.++..+.+++..+..++..+...+..+.+....+..+.+
T Consensus       867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  922 (1163)
T COG1196         867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE  922 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444455554444444444444444444444444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.01  E-value=0.0019  Score=81.66  Aligned_cols=237  Identities=23%  Similarity=0.311  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 003779          464 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL-------VELESFRNEYANVRLECNAADERAKIL  536 (796)
Q Consensus       464 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~-------~~le~l~aErDaAq~E~naA~ERaK~L  536 (796)
                      +.+.++-+.|..+...+-..+..-...+.++++....|+.+.....       ..++.+-..+..++.|.+.+..+.+.|
T Consensus       890 ~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l  969 (1930)
T KOG0161|consen  890 AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNL  969 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556666666666666655555555554443333333322       333333444556777777777777777


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHH-------HHHHHHHHHHHh
Q 003779          537 ASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQ-------EEKKMMQSKLRK  605 (796)
Q Consensus       537 AaEVV~LEEk~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQ-------EEKklLqSKLR~  605 (796)
                      .-|+..+++.+-.|    .|..|++|.    +...+..-+.++..+.+-...+...|+-|+       .-.+.++.+.|+
T Consensus       970 ~~e~~~~~e~~~kL----~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rk 1045 (1930)
T KOG0161|consen  970 EEEINSLDENISKL----SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRK 1045 (1930)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777766644    333344433    333444444555555555555444444443       222334444444


Q ss_pred             hccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCCcCcccccccccccchhhHHHH
Q 003779          606 ASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRM  685 (796)
Q Consensus       606 asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~  685 (796)
                      ..+.-+.            +..+.+++.......   .... ...   +.++         ++.      -.-.+|.-++
T Consensus      1046 le~el~~------------~~e~~~~~~~~~~el---~~~l-~kk---e~El---------~~l------~~k~e~e~~~ 1091 (1930)
T KOG0161|consen 1046 LEGELKD------------LQESIEELKKQKEEL---DNQL-KKK---ESEL---------SQL------QSKLEDEQAE 1091 (1930)
T ss_pred             HHHHHHH------------hhhHHHHHHHHHHHH---HHHH-HHH---HHHH---------HHH------HHHhhHHHHH
Confidence            4332221            111222221000000   0000 000   0011         111      1334566688


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHH
Q 003779          686 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL  738 (796)
Q Consensus       686 IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELl  738 (796)
                      +..+--.|.+|.....+|-..|..+.....++.+.+.||.++|++++.+||.+
T Consensus      1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999988

>PRK02224 chromosome segregation protein; Provisional

Probab=97.89  E-value=0.019  Score=66.69  Aligned_cols=165  Identities=18%  Similarity=0.268  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS-------YNQQRSVVNQLKSEMEKLQEEIKVQLVEL  512 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~-------yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  512 (796)
                      .++..|++.|.++..+.-.+...+.......+.|-.+.+.|...       +........+|..+.+.|+.++......+
T Consensus       258 ~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l  337 (880)
T PRK02224        258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAA  337 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555554444444332       22233334455555555555555555455


Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779          513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  592 (796)
Q Consensus       513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL  592 (796)
                      ..+..+....+.......++.+.+..++..|+.++..++..-=.++++++.+..+++.++.++..+..+..++...|+.|
T Consensus       338 ~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l  417 (880)
T PRK02224        338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL  417 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHH
Confidence            54444444444444555555555555555555554444444444455555555555555555554444455555555555


Q ss_pred             HHHHHHHHHHHH
Q 003779          593 QEEKKMMQSKLR  604 (796)
Q Consensus       593 QEEKklLqSKLR  604 (796)
                      |+++..|+.++-
T Consensus       418 ~~~~~~l~~~~~  429 (880)
T PRK02224        418 REERDELREREA  429 (880)
T ss_pred             HHHHHHHHHHHH
Confidence            555555554433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.88  E-value=0.011  Score=71.72  Aligned_cols=242  Identities=22%  Similarity=0.321  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003779          441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS-------SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  513 (796)
Q Consensus       441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENs-------aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  513 (796)
                      +...|+.+|+++..+...+...+.....-...+-..-+       .+..++..-...+..++.+.++++..+...-..++
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  747 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE  747 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55567777777776666665555555444444444333       33344444444444444444455444444444444


Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 003779          514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR-------SNELKLERQLENSQSEISSYKKKISSLEKERQDFQ  586 (796)
Q Consensus       514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR-------S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~  586 (796)
                      .+..+.+..+.+.+...+....+......|++++..+.       ...-..+.++..++.++..+..++......+..+.
T Consensus       748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (1163)
T COG1196         748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE  827 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444443333       22223333344444444444555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCCcC
Q 003779          587 STIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES  666 (796)
Q Consensus       587 stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~  666 (796)
                      ..|+.++++...++.++......-..               ....+       +....+                     
T Consensus       828 ~ei~~l~~~~~~~~~~~~~l~~~~~~---------------~~~~~-------~~~~~~---------------------  864 (1163)
T COG1196         828 QEIEELEEEIEELEEKLDELEEELEE---------------LEKEL-------EELKEE---------------------  864 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHH-------HHHHHH---------------------
Confidence            55555555555555555532221000               00011       000000                     


Q ss_pred             cccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHH
Q 003779          667 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL  737 (796)
Q Consensus       667 G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL  737 (796)
                                  -......+.+++.-|..++.+++.+-..|+.......+++.....+..++..+..+++.
T Consensus       865 ------------l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  923 (1163)
T COG1196         865 ------------LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER  923 (1163)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        01112456677777777777777777777777777777777777777777655444433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.78  E-value=0.11  Score=61.04  Aligned_cols=237  Identities=19%  Similarity=0.242  Sum_probs=118.1

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779          436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  515 (796)
Q Consensus       436 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  515 (796)
                      ....+....||+-|+-       |...|+.+|.+=+.|=..-..|+..=..-...+.+|+.+.|+||..+       ..+
T Consensus       414 ~~~~~a~~rLE~dvkk-------LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl-------~~L  479 (697)
T PF09726_consen  414 NSEPDAISRLEADVKK-------LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL-------QNL  479 (697)
T ss_pred             ccChHHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence            3445666677766654       66777777777777766655565544456667777777777777643       233


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhh----HHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779          516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS----QSEISSYKKKISSLEKERQDFQSTIEA  591 (796)
Q Consensus       516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l----~~Er~S~~~q~ssi~kER~~l~stIda  591 (796)
                      ..-+..=++.+....-|.+..+.-...||.++...|....+.+-...+.    ...|.   ---+.....|.+|..+|.+
T Consensus       480 ~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~  556 (697)
T PF09726_consen  480 VQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ---ECAESCRQRRRQLESELKK  556 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc---hhHHHHHHHHHHHHHHHHH
Confidence            2223222233333333333333334444444443333322211111110    00000   0111233445667777777


Q ss_pred             HHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCCcCccccc
Q 003779          592 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLAL  671 (796)
Q Consensus       592 LQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af  671 (796)
                      |+-|+|..+..++.+.........-.     ++   +-.|.+++-.+.-                               
T Consensus       557 lr~elk~kee~~~~~e~~~~~lr~~~-----~e---~~~~~e~L~~aL~-------------------------------  597 (697)
T PF09726_consen  557 LRRELKQKEEQIRELESELQELRKYE-----KE---SEKDTEVLMSALS-------------------------------  597 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----hh---hhhhHHHHHHHHH-------------------------------
Confidence            77777777777665444221100000     00   0011111111110                               


Q ss_pred             ccccccchhhHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779          672 EGLAVNIPHDQMRMIHNINALISELALE---KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  740 (796)
Q Consensus       672 ~~~~~~Ip~DQlR~IdSInaLisELa~E---ReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  740 (796)
                                  .|-|-=..|=..|..|   |=.|.+||-++.|++..+..+-..=.+++++++++|.-+.|
T Consensus       598 ------------amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  598 ------------AMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             ------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                        1222222222233332   45688888888888888888888888888888888865443

; GO: 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.74  E-value=0.069  Score=61.35  Aligned_cols=153  Identities=24%  Similarity=0.279  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779          445 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  524 (796)
Q Consensus       445 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~  524 (796)
                      ||..|+++-+||-.|+.....-.+-+++|-.+++.|-       ..+...+.++++|+++.+.-....+.+..|++....
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~-------~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~  213 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE-------AELEQEEEEMEQLKQQQKELTESSEELKEERESLKE  213 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999989999988777666555555555555554       455555566666666666666677888999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHhhhhHHHhhh--hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 003779          525 ECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLEN--SQSEISSYKKKISSLEKERQDFQSTIEALQEEKK  597 (796)
Q Consensus       525 E~naA~ERaK~LAaEVV~LEEk~lqLR-----S~eLKleKElE~--l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk  597 (796)
                      +..++..|.+.|..++..|..+....-     -..++.+++-.+  ++.++..+..++.....++...+..+++|.++++
T Consensus       214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr  293 (546)
T PF07888_consen  214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLR  293 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            999999999999999998888874321     122222222111  2333444444444444445566666677777777


Q ss_pred             HHHHHHH
Q 003779          598 MMQSKLR  604 (796)
Q Consensus       598 lLqSKLR  604 (796)
                      .++.+|.
T Consensus       294 ~~qe~lq  300 (546)
T PF07888_consen  294 SAQEQLQ  300 (546)
T ss_pred             HHHHHHH
Confidence            7777665

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.69  E-value=0.0047  Score=78.36  Aligned_cols=159  Identities=22%  Similarity=0.291  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 003779          446 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL--------------QEEIKVQLVE  511 (796)
Q Consensus       446 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L--------------q~Ei~aQ~~~  511 (796)
                      .|+++++-++|--|+.-|+..++..+-+...+..|-...|+-.+.+.-+..++++.              ..-+.--.-.
T Consensus      1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999998655555555555443              3333333344


Q ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779          512 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  591 (796)
Q Consensus       512 le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda  591 (796)
                      .+.+..|+|+++.+.......++.|..++..+-+.+-+++...=+++.+++.+..-+....+.+..+++++-.+..+++.
T Consensus      1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~e 1530 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEE 1530 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55668889999999999999999999999888888877766666666666666655555555555555555555555555


Q ss_pred             HHHHHHHHHHHHH
Q 003779          592 LQEEKKMMQSKLR  604 (796)
Q Consensus       592 LQEEKklLqSKLR  604 (796)
                      ||..+..|+..|+
T Consensus      1531 lQ~aLeElE~~le 1543 (1930)
T KOG0161|consen 1531 LQAALEELEAALE 1543 (1930)
T ss_pred             HHHHHHHHHHHhh
Confidence            5544444444433

>TIGR00606 rad50 rad50

Probab=97.67  E-value=0.0073  Score=74.03  Aligned_cols=164  Identities=14%  Similarity=0.233  Sum_probs=98.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH--
Q 003779          439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL---TDSY---NQQRSVVNQLKSEMEKLQEEIKVQLV--  510 (796)
Q Consensus       439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaL---t~~y---NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~--  510 (796)
                      ..++..|++.|.+++.+--.+...|+......+.+..+-..+   ....   .+....+..|+.++++|..++..+..  
T Consensus       743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~  822 (1311)
T TIGR00606       743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR  822 (1311)
T ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence            356777888888888887777777777777777776666333   2222   44455566677777776665554332  


Q ss_pred             -------HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH----------hhhhHHHHHHHHH
Q 003779          511 -------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ----------LENSQSEISSYKK  573 (796)
Q Consensus       511 -------~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKE----------lE~l~~Er~S~~~  573 (796)
                             .+..+..+++.++.+.+...+....+..++..|+.++..++...+++.+.          ++.+..++..+..
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~  902 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR  902 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   23334455555555555557777777777777777777777776665543          3334444444544


Q ss_pred             HHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003779          574 KISSLEKERQDFQSTIEALQEEKKMMQSK  602 (796)
Q Consensus       574 q~ssi~kER~~l~stIdaLQEEKklLqSK  602 (796)
                      ++.-+..+-..+...++.++.++..+..+
T Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  931 (1311)
T TIGR00606       903 EIKDAKEQDSPLETFLEKDQQEKEELISS  931 (1311)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            44544444444444455554444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.56  E-value=0.0095  Score=68.08  Aligned_cols=60  Identities=22%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 003779          684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNM  743 (796)
Q Consensus       684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m  743 (796)
                      +.-|.=+-.|+|..+|..++-++|+-.-..=-+|.+.|.||.+-.+.+.+||+-.+.-.-
T Consensus       403 ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~  462 (546)
T PF07888_consen  403 KEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW  462 (546)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344444457889999999999999999888899999999999999999999998765443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=97.51  E-value=0.044  Score=59.73  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=51.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779          437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  515 (796)
Q Consensus       437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  515 (796)
                      ...++...|++-|+++-.+.-.++..+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777777777776666666666666666666666677777776666666666666666665555444433

>PRK03918 chromosome segregation protein; Provisional

Probab=97.38  E-value=0.47  Score=55.33  Aligned_cols=63  Identities=24%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779          442 FAALEQHIEDLTQEKFALQRSLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  504 (796)
Q Consensus       442 faaLqqhIeDLT~EKfaLqR~L~~s~~----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  504 (796)
                      .+.|++.|+.+..+.-.+...++..+.          --+.|..+...+-.+|+.....+.+++.+++.|+++
T Consensus       202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~  274 (880)
T PRK03918        202 LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE  274 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555444444433322          222333333344445555444455555554444444

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.29  E-value=0.043  Score=60.34  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV  507 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~E----sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a  507 (796)
                      +.+..+++.|+.+..+.-.++-.++..++..+    .+......+...++......++++.++++|+.+|..
T Consensus       174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~  245 (562)
T PHA02562        174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLN  245 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555554444443322222    222334444445555555555555555555554433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.25  E-value=0.28  Score=55.58  Aligned_cols=217  Identities=23%  Similarity=0.291  Sum_probs=136.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh-------h
Q 003779          483 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------L  555 (796)
Q Consensus       483 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e-------L  555 (796)
                      ........+.+.+..|+....|+..=...+++|+.|....+.+.+...++......+|..|+.++.++|+.-       -
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~  361 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE  361 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            356667777788888888888888888999999999999999999999999999999999999999988763       1


Q ss_pred             -------hhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccc
Q 003779          556 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTS  628 (796)
Q Consensus       556 -------KleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTs  628 (796)
                             .+...|+.+..|.+.+++.......|...+..+++...-..+-++.||+-+--  ..      .+.+.....+
T Consensus       362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~k--e~------eaaKasEa~A  433 (522)
T PF05701_consen  362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALK--EA------EAAKASEALA  433 (522)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHHHHH
Confidence                   13344555566666666666666666666666666666666666666663221  11      0011111113


Q ss_pred             cccccccccccccCCccccccCCCccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003779          629 TEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALS  708 (796)
Q Consensus       629 TdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa  708 (796)
                      ..+|    +....+.    ...   ....+..+     |.       +.|+      ++--..|......=.+-+-...+
T Consensus       434 la~i----k~l~e~~----~~~---~~~~~~~~-----~~-------Vtls------~eEy~~L~~ka~e~ee~a~kkva  484 (522)
T PF05701_consen  434 LAEI----KALSESE----SSS---RASDSESS-----SK-------VTLS------LEEYESLSKKAEEAEELAEKKVA  484 (522)
T ss_pred             HHHH----HHhhccc----ccc---cccccCCC-----CC-------eeec------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333    1110000    000   00000011     22       4455      33344555555555555555677


Q ss_pred             HHHHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779          709 SELAQSSKLKDLNNELSRKLEHQTQRLE  736 (796)
Q Consensus       709 ~esr~~~dLk~lN~ELsRKLE~qtQRLE  736 (796)
                      .+..++..++.-.++.-.|||.....+|
T Consensus       485 ~A~aqve~ak~se~e~l~kle~~~~e~~  512 (522)
T PF05701_consen  485 AAMAQVEAAKASEKEILEKLEEAMKEIE  512 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888999899888877655

Several sequences in this family are described as being myosin heavy chain-like.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.24  E-value=0.03  Score=59.50  Aligned_cols=44  Identities=16%  Similarity=0.213  Sum_probs=21.6

Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhh----hHHHHHHHHHHHHHHHHHHH
Q 003779          560 QLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQEEKKMMQSKL  603 (796)
Q Consensus       560 ElE~l~~Er~S~~~q~ssi~kER~----~l~stIdaLQEEKklLqSKL  603 (796)
                      +++.+..++..+..++..+++.+.    -=..+|.+|+.+.+.||...
T Consensus       245 ~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~  292 (325)
T PF08317_consen  245 KIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444433332    22356667777777666544

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.22  E-value=0.056  Score=65.71  Aligned_cols=140  Identities=18%  Similarity=0.288  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHhhhHHHHHHHHH
Q 003779          464 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-------RNEYANVRLECNAADERAKIL  536 (796)
Q Consensus       464 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-------~aErDaAq~E~naA~ERaK~L  536 (796)
                      ...++-.+..-..++++..+++.--.++++++++.+.--.||+.-...+..+       +.++..++....+...+...|
T Consensus       298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l  377 (1074)
T KOG0250|consen  298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL  377 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555556666776676666666666665555555554444444444       444444444455555555555


Q ss_pred             HHHHHHHHHHH-HHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779          537 ASEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  603 (796)
Q Consensus       537 AaEVV~LEEk~-lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL  603 (796)
                      -.++..++++. ..+-+...+.+.+++.|..|+..++-++.+|..|++.|+..+...|||+-..+.++
T Consensus       378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i  445 (1074)
T KOG0250|consen  378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEI  445 (1074)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            55555555555 44455556777888888888888888888888888888888888888875554443

>TIGR00606 rad50 rad50

Probab=97.17  E-value=0.047  Score=67.28  Aligned_cols=125  Identities=10%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 003779          478 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL  557 (796)
Q Consensus       478 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKl  557 (796)
                      ..|...-++++..+..++.+++-|+.++..-...++.++.+.+....+........+....++..|..+|...  .....
T Consensus       891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y--~~~~~  968 (1311)
T TIGR00606       891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK--IQDGK  968 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCC
Confidence            3344444444444444444444444444444444444443333333333333333333333333344444332  11222


Q ss_pred             HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          558 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       558 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      .++++.+..++..+...+..++.+...+...|+++..+...++..-|
T Consensus       969 ~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr 1015 (1311)
T TIGR00606       969 DDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.17  E-value=0.097  Score=57.66  Aligned_cols=167  Identities=16%  Similarity=0.227  Sum_probs=90.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRA----LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  512 (796)
Q Consensus       437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~----l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  512 (796)
                      .-..+...|+..|+.+..+--.+++.+...++    ..+.|-.+-+.+...+++-..++..|++++..+..++.....+|
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L  257 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL  257 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            34455666777777776666656555554443    34556677777777777777777777777776655543333333


Q ss_pred             hhhHHHHHHHHH------------------------------hhhHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhHH
Q 003779          513 ESFRNEYANVRL------------------------------ECNAADERAKILASEVIGLEEKAL---RLRSNELKLER  559 (796)
Q Consensus       513 e~l~aErDaAq~------------------------------E~naA~ERaK~LAaEVV~LEEk~l---qLRS~eLKleK  559 (796)
                      ..+..++..+..                              .....+++.+.|..+...|++.+.   +.+..--++.+
T Consensus       258 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~  337 (562)
T PHA02562        258 NKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSK  337 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322222222211                              122233444455555555555544   22222333455


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779          560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  603 (796)
Q Consensus       560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL  603 (796)
                      .+++++.++...+..+..+..++..++..|+.|+++...+..+|
T Consensus       338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l  381 (562)
T PHA02562        338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL  381 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Confidence            55566666666666666666666666666666664433333333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.14  Score=60.99  Aligned_cols=141  Identities=23%  Similarity=0.271  Sum_probs=78.4

Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccc
Q 003779          569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD  648 (796)
Q Consensus       569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ld  648 (796)
                      -..+.++..+.+-|+-++++|+-||-+.|.+|.||.++.-..-.               -++-|    .+..+.+.++ +
T Consensus       468 tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~---------------l~~ql----kq~q~a~~~~-~  527 (1118)
T KOG1029|consen  468 TTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQE---------------LNHQL----KQKQSAHKET-T  527 (1118)
T ss_pred             chHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---------------HHHHH----HHhhhhccCc-c
Confidence            34455667777888888999999999999999999865432111               11111    1111111111 0


Q ss_pred             cCCCccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-------
Q 003779          649 DASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN-------  721 (796)
Q Consensus       649 sas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN-------  721 (796)
                      .                 +...|..-   . ..--.+|.-|.+-++||+.|.+.-++.+-+--.++.+||+.-       
T Consensus       528 ~-----------------~~s~L~aa---~-~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lak  586 (1118)
T KOG1029|consen  528 Q-----------------RKSELEAA---R-RKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAK  586 (1118)
T ss_pred             h-----------------HHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            0                 00111100   0 011145677888888888888877777766666666665431       


Q ss_pred             -----HHHHHHHHHHHhHHHHHHHHHhhhhcccc
Q 003779          722 -----NELSRKLEHQTQRLELLTAQNMANENISF  750 (796)
Q Consensus       722 -----~ELsRKLE~qtQRLELltsq~ma~e~~~a  750 (796)
                           ++-...-|.+|.+|||.--+.......++
T Consensus       587 e~~yk~e~d~~ke~et~~lel~~~ke~e~~~asa  620 (1118)
T KOG1029|consen  587 EELYKNERDKLKEAETKALELIGEKEAESAPASA  620 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhc
Confidence                 22233345667888887666654444333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.13  E-value=0.13  Score=53.98  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH--------HHhhhhHHHHHHHHHHHHHHHHHHHHh----h
Q 003779          539 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL--------EKERQDFQSTIEALQEEKKMMQSKLRK----A  606 (796)
Q Consensus       539 EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi--------~kER~~l~stIdaLQEEKklLqSKLR~----a  606 (796)
                      ++...+.++.+++.....++.++..++.++..++.++..+        ..++.++...+..++.+...++.+|.+    +
T Consensus       197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~A  276 (423)
T TIGR01843       197 ELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRS  276 (423)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEEC
Confidence            3444444444444444444444444444444444443332        233444555555555555555555553    4


Q ss_pred             ccCCCc
Q 003779          607 SGSGKS  612 (796)
Q Consensus       607 sa~gKa  612 (796)
                      +-.|.+
T Consensus       277 P~dG~V  282 (423)
T TIGR01843       277 PVDGTV  282 (423)
T ss_pred             CCCcEE
Confidence            445554

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.11  E-value=0.091  Score=64.46  Aligned_cols=57  Identities=19%  Similarity=0.177  Sum_probs=30.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779          684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  740 (796)
Q Consensus       684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  740 (796)
                      .+.+-...|..+++.-+.++-...........+++....++..+++...+.++.+..
T Consensus       813 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~  869 (1201)
T PF12128_consen  813 ELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEE  869 (1201)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555544444444444445556666666666666666665555444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.08  E-value=0.29  Score=56.99  Aligned_cols=39  Identities=18%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 003779          684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNN  722 (796)
Q Consensus       684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~  722 (796)
                      +|...+++.+..++.||++|...|......|-.|-.+-+
T Consensus       346 ~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va  384 (617)
T PF15070_consen  346 AMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVA  384 (617)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            678889999999999999999999888777766544433

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.08  E-value=1.6  Score=54.97  Aligned_cols=111  Identities=16%  Similarity=0.263  Sum_probs=57.3

Q ss_pred             ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hhHHHHHHHHHHHHHH
Q 003779          428 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ  502 (796)
Q Consensus       428 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq-----Q~~~v~qLk~~mE~Lq  502 (796)
                      +-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+...    -+.||+     ....+-..+.+++.++
T Consensus       208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~  282 (1353)
T TIGR02680       208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS  282 (1353)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888899999999999998887776665544333333 333322    344444     2223333344444444


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003779          503 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL  543 (796)
Q Consensus       503 ~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~L  543 (796)
                      .++......++....+.+.++.++.....+...+..|...|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l  323 (1353)
T TIGR02680       283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL  323 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444333444444444444444444444444444433333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.02  E-value=0.2  Score=52.57  Aligned_cols=63  Identities=22%  Similarity=0.351  Sum_probs=36.6

Q ss_pred             HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH--------HHHHHHHHHHHHHHHHHHhh
Q 003779          544 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ--------STIEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       544 EEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~--------stIdaLQEEKklLqSKLR~a  606 (796)
                      +.+....+..-..++.++..+..++..++.++..+..+...+.        ..+..++.+++.++.++..+
T Consensus       195 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~  265 (423)
T TIGR01843       195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKA  265 (423)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666677777777777666666655543322        22344555566666666543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK11637 AmiB activator; Provisional

Probab=97.01  E-value=0.32  Score=53.14  Aligned_cols=73  Identities=19%  Similarity=0.262  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  512 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  512 (796)
                      .++..+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+|+.++++++.+|..+...+
T Consensus        54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666666655555555555555555666666666666666666666655554443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.97  E-value=0.27  Score=59.17  Aligned_cols=158  Identities=22%  Similarity=0.247  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003779          444 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  523 (796)
Q Consensus       444 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq  523 (796)
                      ..+|..-+....|+.|-+.+..+|+..+++-.-+.+|-=.+++|.-...+-..+-|||++|.+-+++    .+.+-+.|+
T Consensus       334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a----~r~q~eka~  409 (980)
T KOG0980|consen  334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA----SRTQLEKAQ  409 (980)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            4567777888899999999999999999999999999999999999998888888888887443322    222222222


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh----------------------------HHHhhhhHHHHHHHHHHH
Q 003779          524 LECNAADERAKILASEVIGLEEKALRLRSNELKL----------------------------ERQLENSQSEISSYKKKI  575 (796)
Q Consensus       524 ~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKl----------------------------eKElE~l~~Er~S~~~q~  575 (796)
                      --..++.-.+.........|-++..+||....-+                            ...++++..+.....+++
T Consensus       410 ~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~  489 (980)
T KOG0980|consen  410 VLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT  489 (980)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2222222333333444455555555555543322                            233455555666666677


Q ss_pred             HhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779          576 SSLEKERQDFQSTIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       576 ssi~kER~~l~stIdaLQEEKklLqSKLR~  605 (796)
                      +.+.+-=.++.-++..|++|.+.||-.+-+
T Consensus       490 e~~~~~le~l~~El~~l~~e~~~lq~~~~~  519 (980)
T KOG0980|consen  490 ESQAKALESLRQELALLLIELEELQRTLSN  519 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            766666666777777777777777777654

>PRK09039 hypothetical protein; Validated

Probab=96.90  E-value=0.12  Score=55.85  Aligned_cols=73  Identities=21%  Similarity=0.241  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779          527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  599 (796)
                      ..+..|+..|+.+...+.....+.+.+-.++..|++.|+..+.++..++.+++..-.+.+..|+.|+.++..+
T Consensus       112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666666666666666666666666666666666655555555555555444333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.88  E-value=1.6  Score=52.19  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=12.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 003779          441 DFAALEQHIEDLTQEKFALQR  461 (796)
Q Consensus       441 ~faaLqqhIeDLT~EKfaLqR  461 (796)
                      +..+|++.+.+|-.++-.+.+
T Consensus       233 e~e~l~~~~~el~~~~~~~~~  253 (908)
T COG0419         233 EIEALEERLAELEEEKERLEE  253 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666555555555

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.84  E-value=0.11  Score=55.89  Aligned_cols=76  Identities=29%  Similarity=0.315  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh----hhhHHHHHHHHHHHHHHHHHH
Q 003779          527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE----RQDFQSTIEALQEEKKMMQSK  602 (796)
Q Consensus       527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE----R~~l~stIdaLQEEKklLqSK  602 (796)
                      ..+.+..+.+-.|+...-.++.+++.+.-.+...++....++..+..++..+++.    |+-=.++|.+|+.+...||..
T Consensus       207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l  286 (312)
T smart00787      207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL  286 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444443333333444444444444444444444442    333345666777766666653

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.83  E-value=0.17  Score=61.05  Aligned_cols=107  Identities=26%  Similarity=0.383  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHh
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC-NAADERAKILASEVIGLEEKALRLR-------SNELKLERQL  561 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~-naA~ERaK~LAaEVV~LEEk~lqLR-------S~eLKleKEl  561 (796)
                      .+.-|+-++|.|++-+..-...||-+++|..+-=-.. +...-+-|.|...-+.|-+-+-|||       -...|+.|++
T Consensus       326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel  405 (1243)
T KOG0971|consen  326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL  405 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3445566666666666666667777777776532222 1223344444444455555554444       4567888888


Q ss_pred             hhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          562 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       562 E~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      |..+.|+.-+++.-+.+..+=+.+.++|.-|||..
T Consensus       406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV  440 (1243)
T KOG0971|consen  406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQV  440 (1243)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888765

>PRK03918 chromosome segregation protein; Provisional

Probab=96.82  E-value=0.35  Score=56.34  Aligned_cols=74  Identities=14%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          523 RLECNAADERAKILASEVIGLEEKALRLRSNELKL------ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       523 q~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKl------eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      ...+..-.++.+.+..|+..|++++.+++...-+.      -+.++.+......+...+..+.+++..+...++.|++++
T Consensus       251 ~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l  330 (880)
T PRK03918        251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI  330 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444555555555555555443222111      111222333333444555555555555555555554444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.81  E-value=0.054  Score=56.64  Aligned_cols=118  Identities=25%  Similarity=0.332  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---------HhhhhHH
Q 003779          489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS---------NELKLER  559 (796)
Q Consensus       489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS---------~eLKleK  559 (796)
                      ..+..|--++.+|...+.-+.-+|+.+++|..++.-.+.+.......|.-+|..+|.++..+|.         .-+|.++
T Consensus        10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~   89 (239)
T COG1579          10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER   89 (239)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            3444555555555555555555555555555555555555555555555555555555544433         4466677


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779          560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  606 (796)
                      ++..|..|+....++...++.|=.+|...++.|+++...++.++.++
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~  136 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL  136 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999998888888888743

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.81  E-value=0.22  Score=48.12  Aligned_cols=132  Identities=19%  Similarity=0.290  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003779          464 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL  543 (796)
Q Consensus       464 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~L  543 (796)
                      +.+.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..++.-.+..-...    ..+-.|..-|..|
T Consensus        10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~----~~~E~l~rriq~L   85 (143)
T PF12718_consen   10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK----SNAEQLNRRIQLL   85 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHHHhhHHHH
Confidence            334444455555555555555555555555555555555554444444433332222221111    1122566666666


Q ss_pred             HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779          544 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       544 EEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  599 (796)
                      |+++-+.-..---+...|..+....+-+.+++..|+.+|+....-++.|....+.+
T Consensus        86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            66666554433334455566667788888899988888888887777776655443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.76  E-value=0.11  Score=65.39  Aligned_cols=170  Identities=16%  Similarity=0.203  Sum_probs=110.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          439 NEDFAALEQHIEDLTQEKFALQRSLEASRA------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  512 (796)
Q Consensus       439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  512 (796)
                      .+.++.|+.-++.|.+++-.+.+-++...+      -.+.+..+-+.|..+..++...+.+++.+++.++.++..-...+
T Consensus       313 ~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeL  392 (1486)
T PRK04863        313 ARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV  392 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888888887777666665554433      23445556666777777777777777777777777777666667


Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779          513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  592 (796)
Q Consensus       513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL  592 (796)
                      +.++.++...+.+...+..++..+...+..|+.= .++   +=-..=..++|...+..|..++..++.++.++...++.+
T Consensus       393 eeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~-~~~---~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~l  468 (1486)
T PRK04863        393 DELKSQLADYQQALDVQQTRAIQYQQAVQALERA-KQL---CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA  468 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776666666666666666666666655544421 111   100111234566777777888887777777888888888


Q ss_pred             HHHHHHHHHHHHh-hccCCCc
Q 003779          593 QEEKKMMQSKLRK-ASGSGKS  612 (796)
Q Consensus       593 QEEKklLqSKLR~-asa~gKa  612 (796)
                      +.+++-+..++.. ....|++
T Consensus       469 ea~leql~~~~~~l~~~~Gkv  489 (1486)
T PRK04863        469 QAAHSQFEQAYQLVRKIAGEV  489 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHcCCc
Confidence            8777777777664 4556666

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.76  E-value=0.32  Score=51.11  Aligned_cols=159  Identities=23%  Similarity=0.296  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHhhhh--HHHH
Q 003779          449 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-------LVELESF--RNEY  519 (796)
Q Consensus       449 IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-------~~~le~l--~aEr  519 (796)
                      |..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..++.++-+++.+|+.-       ...+.++  .-||
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~   91 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL   91 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            334455666665555555555555555555555555555555555555555555554433       3333333  5678


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH-
Q 003779          520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQE-  594 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQE-  594 (796)
                      .+...|...|.+|...|-.|++.|++++..+.-...-+...+..    +.+...+.+.++.-|..++..+.+..+.|-+ 
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~  171 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK  171 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888999999999998888888887776654332222222222    2333344444555555555555544444443 


Q ss_pred             ---HHHHHHHHHHhhc
Q 003779          595 ---EKKMMQSKLRKAS  607 (796)
Q Consensus       595 ---EKklLqSKLR~as  607 (796)
                         +.=....++|+..
T Consensus       172 l~~ell~~yeri~~~~  187 (239)
T COG1579         172 LDPELLSEYERIRKNK  187 (239)
T ss_pred             cCHHHHHHHHHHHhcC
Confidence               3344456666433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.74  E-value=0.16  Score=57.87  Aligned_cols=146  Identities=19%  Similarity=0.277  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779          459 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  535 (796)
Q Consensus       459 LqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~  535 (796)
                      +.+.|...++..+.|..|-+.|..+|-   .-...+.+++.+++.++.++..-...+..-...|..++-++.+..++...
T Consensus       315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee  394 (569)
T PRK04778        315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE  394 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            556667777777788888777777763   33555677777777777777766666777777788888888888999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh--HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          536 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       536 LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ss--i~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      +..+.+.+.+.+..||..+..+++.++.++..+..+++.+..  +-.--.....-+..++++.+.|..+|.
T Consensus       395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~  465 (569)
T PRK04778        395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE  465 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998888888888877766665552  111123455556666666666666555

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.70  E-value=1.3  Score=54.42  Aligned_cols=152  Identities=18%  Similarity=0.229  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003779          461 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV  540 (796)
Q Consensus       461 R~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEV  540 (796)
                      |.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..-...|..++.|-.-+..+.+++...--.|.-++
T Consensus       230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~  309 (1200)
T KOG0964|consen  230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI  309 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            45555555666666666666666677777778888888888888888888888888888888888888888887888888


Q ss_pred             HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCc
Q 003779          541 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKS  612 (796)
Q Consensus       541 V~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa  612 (796)
                      -.|++++..-+-++=-+...++++.+++..-..+++.|...+..+..+=+.+-+-...|+.+.+- ..-.|+.
T Consensus       310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~  382 (1200)
T KOG0964|consen  310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRY  382 (1200)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            88888888877777778889999999999999999999999999999999999999999998886 4444554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.68  E-value=1.2  Score=56.80  Aligned_cols=138  Identities=20%  Similarity=0.246  Sum_probs=88.0

Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHhhhhHH
Q 003779          447 QHIEDLT---QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS------EMEKLQEEIKVQLVELESFRN  517 (796)
Q Consensus       447 qhIeDLT---~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~------~mE~Lq~Ei~aQ~~~le~l~a  517 (796)
                      .+||+.+   .+|..-.+.|++.......+.++-..|..+-+.......+.+.      ++.+++.++......++.+..
T Consensus       283 ~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee  362 (1486)
T PRK04863        283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEE  362 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455543   4444455555555554444444444444433333333222222      222334455555666777778


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 003779          518 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  584 (796)
Q Consensus       518 ErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~  584 (796)
                      +.........++.++...+..++..+|+++..++...-+.+.++..+..++..|...+..+++-+.-
T Consensus       363 ~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~  429 (1486)
T PRK04863        363 RLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQL  429 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888887777888888888888888888777666643

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.63  E-value=0.95  Score=45.96  Aligned_cols=162  Identities=19%  Similarity=0.291  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      .+++.|+.+|+++..|--.|.+---++..--.-.-+.+..|-+--..-...|-.|+..+.+.+....+---.+-..-+|.
T Consensus        19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el   98 (194)
T PF15619_consen   19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL   98 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788889999999998877776666555445555555555444444445555566555555543332222222222222


Q ss_pred             HHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779          520 ANVRLECNAADERAKILAS-----EVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIE  590 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LAa-----EVV~LEEk~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stId  590 (796)
                      -.    .....-+.+.|..     |...|..++-.+...--...+.+..    +.-.-+++.+++..-.+--..++..+.
T Consensus        99 ~k----~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~  174 (194)
T PF15619_consen   99 LK----TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVK  174 (194)
T ss_pred             HH----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            22    2222222222222     2333333333332221111222221    222225666666666666778889999


Q ss_pred             HHHHHHHHHHHHHHh
Q 003779          591 ALQEEKKMMQSKLRK  605 (796)
Q Consensus       591 aLQEEKklLqSKLR~  605 (796)
                      .|++|...|+.+|+.
T Consensus       175 ~l~~ei~~L~~klkE  189 (194)
T PF15619_consen  175 SLQEEIQRLNQKLKE  189 (194)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999973

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.61  E-value=0.43  Score=49.32  Aligned_cols=48  Identities=27%  Similarity=0.288  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779          693 ISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  740 (796)
Q Consensus       693 isELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  740 (796)
                      +..+..|=.++...+.....+++.|+..|..|.+.|..+.+++.-...
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~  258 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE  258 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH
Confidence            344444555555556666666666666777777777666666654433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.59  E-value=2.6  Score=50.39  Aligned_cols=170  Identities=22%  Similarity=0.302  Sum_probs=124.4

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH-------------
Q 003779          431 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE-------------  497 (796)
Q Consensus       431 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~-------------  497 (796)
                      -|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=..+-+..+++.|..+..|++|+..             
T Consensus       256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~  335 (717)
T PF09730_consen  256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE  335 (717)
T ss_pred             chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence            4667777788999999999999999999999999999988888888888888899888888888871             


Q ss_pred             ------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 003779          498 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  559 (796)
Q Consensus       498 ------------------mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleK  559 (796)
                                        ++-|+....+-..++..++.|..+.+.+++...++.+.   +...++.++..|......+++
T Consensus       336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek  412 (717)
T PF09730_consen  336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK  412 (717)
T ss_pred             cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence                              24445555555556666677777777666666664443   334455555555555555566


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779          560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  603 (796)
Q Consensus       560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL  603 (796)
                      ....-.+.+..+++++..+..-.++-+..|...|+|+-.+--=|
T Consensus       413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeL  456 (717)
T PF09730_consen  413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEEL  456 (717)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            66566677778888888888888888878888887765444333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.58  E-value=0.23  Score=61.27  Aligned_cols=168  Identities=24%  Similarity=0.298  Sum_probs=107.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH---
Q 003779          437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQL---  509 (796)
Q Consensus       437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq----Q~~~v~qLk~~mE~Lq~Ei~aQ~---  509 (796)
                      ...+.-+-|++.|+.++.+...|+|   ++.+|++.=..|+......-++    .-..+.+++++|+-+++..+.-+   
T Consensus       462 ~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~  538 (1317)
T KOG0612|consen  462 ELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL  538 (1317)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445667899999999999999998   4444444433333322222222    22344555555655555444332   


Q ss_pred             HHhhhhHHHHHHHHHhhhH-----------HHHHHHHHHHHHH---HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHH
Q 003779          510 VELESFRNEYANVRLECNA-----------ADERAKILASEVI---GLEEKALRLRSNELKLERQLENSQSEISSYKKKI  575 (796)
Q Consensus       510 ~~le~l~aErDaAq~E~na-----------A~ERaK~LAaEVV---~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~  575 (796)
                      -.+.+++.+.+.+.+++.+           ..+-.+.++.|..   .+++++-.+-....|+.++..+++.+...++++.
T Consensus       539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~  618 (1317)
T KOG0612|consen  539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQR  618 (1317)
T ss_pred             hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333445555555555553           3334444444444   8888888888888999999999999999999998


Q ss_pred             HhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779          576 SSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  607 (796)
Q Consensus       576 ssi~kER~~l~stIdaLQEEKklLqSKLR~as  607 (796)
                      ..+--++..+...|.-||+..+.+...++++-
T Consensus       619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~  650 (1317)
T KOG0612|consen  619 TEISEIIAELKEEISSLEETLKAGKKELLKVE  650 (1317)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence            88888888877777777766655555555443

>PRK09039 hypothetical protein; Validated

Probab=96.48  E-value=0.19  Score=54.32  Aligned_cols=109  Identities=14%  Similarity=0.189  Sum_probs=52.0

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003779          435 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  514 (796)
Q Consensus       435 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~  514 (796)
                      -+..+.+.+.|+..|.+|++ =++|.      +.-...|-.+-..|..+|..-...-..|+...+.+......-...+..
T Consensus        48 i~~~~~eL~~L~~qIa~L~e-~L~le------~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~  120 (343)
T PRK09039         48 ISGKDSALDRLNSQIAELAD-LLSLE------RQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE  120 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHH-HHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHH
Confidence            35567777777777777542 12222      122233333334444444422222222222222111100011122333


Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRL  550 (796)
Q Consensus       515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL  550 (796)
                      +..+.++.+...+++.-+...|.+|+..|+.++-.+
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l  156 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL  156 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777777777776666665544

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.48  E-value=0.0007  Score=77.96  Aligned_cols=162  Identities=28%  Similarity=0.391  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Q 003779          444 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF----  515 (796)
Q Consensus       444 aLqqhIeDLT~EKfaLqR~L~~s~~l~Es----La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l----  515 (796)
                      -|++.|.+|.+||-.|+-.+...+.-..+    ..+.+..+..+++.-...+.+|++++++++..+.-+...++.+    
T Consensus       197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei  276 (713)
T PF05622_consen  197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI  276 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888888888887666544433222    2244555666777777777777777766655443333333332    


Q ss_pred             --------------------HHHHHHHHHhhhHHHH------H-------HHHHHHHHHHHHHHHHHHHhHhhhhHHHhh
Q 003779          516 --------------------RNEYANVRLECNAADE------R-------AKILASEVIGLEEKALRLRSNELKLERQLE  562 (796)
Q Consensus       516 --------------------~aErDaAq~E~naA~E------R-------aK~LAaEVV~LEEk~lqLRS~eLKleKElE  562 (796)
                                          +-|+|..+..+..+.-      +       ...|-.+|..|+++..-+.-..+.++.++.
T Consensus       277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~  356 (713)
T PF05622_consen  277 DELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK  356 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                3333333332222111      0       011223444455544444444555566665


Q ss_pred             h---hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779          563 N---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       563 ~---l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~  605 (796)
                      +   ++..+..|++++.-+..++......++.|+.|.+.|+.++..
T Consensus       357 ~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~  402 (713)
T PF05622_consen  357 KARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA  402 (713)
T ss_dssp             ----------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   556677777777777777777777777777777777777664

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.36  E-value=0.14  Score=55.54  Aligned_cols=141  Identities=17%  Similarity=0.261  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779          455 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  534 (796)
Q Consensus       455 EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK  534 (796)
                      ++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-...  ......+..|+......+.+|.++.+
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~  143 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE  143 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence            5666777788888888888888888888887766666666666655544332  22333445899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhh--------------hHHHHHHHHHHHHHHHH
Q 003779          535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ--------------DFQSTIEALQEEKKMMQ  600 (796)
Q Consensus       535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~--------------~l~stIdaLQEEKklLq  600 (796)
                      .|+.++..+-++..     +|+.+++  .+++...++..++.-+-....              -++.-|..+|||+.++.
T Consensus       144 qLe~d~qs~lDEke-----El~~ERD--~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k  216 (319)
T PF09789_consen  144 QLERDLQSLLDEKE-----ELVTERD--AYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLK  216 (319)
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888765     4455555  566777777777665544322              23344555566665555


Q ss_pred             HHHH
Q 003779          601 SKLR  604 (796)
Q Consensus       601 SKLR  604 (796)
                      +.+-
T Consensus       217 ~~i~  220 (319)
T PF09789_consen  217 QTIN  220 (319)
T ss_pred             HHHH
Confidence            5443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.24  E-value=0.13  Score=57.34  Aligned_cols=104  Identities=17%  Similarity=0.299  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  569 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~  569 (796)
                      ++..+..+++.++.|+..-.-+...+..||.+++.|+.++.+       |-...+++...+|-+-+|+..++..+...-.
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~-------e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q  147 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQ-------EREAVRQELAAARQNLAKAQQELARLTKQAQ  147 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777888888777777778888888888888887765       4444556666777788888888888877777


Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 003779          570 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ  600 (796)
Q Consensus       570 S~~~q~ssi~kER~~l~stIdaLQEEKklLq  600 (796)
                      .+..++.-+..+|.+++-..+.||-+.|.||
T Consensus       148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888888888888888887777

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.23  E-value=5.1  Score=49.87  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=33.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHH
Q 003779          684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT  739 (796)
Q Consensus       684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlt  739 (796)
                      ..++.|..-|..+..+.+++=..|.........++..-..+..+++-..+.|+-+.
T Consensus       607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (1201)
T PF12128_consen  607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK  662 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34556777777777666666666666666666666655555555555554444443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=96.21  E-value=0.24  Score=48.01  Aligned_cols=66  Identities=26%  Similarity=0.396  Sum_probs=49.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          486 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  551 (796)
Q Consensus       486 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR  551 (796)
                      .....+.++..++.++++.+......+..++.++...+.......++.+.+..++..+++++.+++
T Consensus        85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456667777777777777777778888888877777777777788888888888888877776

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.19  E-value=1.8  Score=44.65  Aligned_cols=126  Identities=21%  Similarity=0.286  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003779          442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  518 (796)
Q Consensus       442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  518 (796)
                      ++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+=   +--.....|++++|.|+..       +..+-++
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~   82 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE   82 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            44566666667788888999999999999999999988876553   2223334556666666553       2333444


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 003779          519 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  574 (796)
Q Consensus       519 rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q  574 (796)
                      +....-.|-....-.+.|-++|..|+++-.++-...=++.+..+.|..+...+..+
T Consensus        83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q  138 (193)
T PF14662_consen   83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ  138 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence            44444444444444555666666666655555444444444444444444444443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.15  E-value=0.65  Score=57.02  Aligned_cols=166  Identities=23%  Similarity=0.336  Sum_probs=100.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  512 (796)
Q Consensus       438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E-----NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  512 (796)
                      +..+...|+.+|+|+ +||+.-.+.++--.+.-++|-++     .=...+.||.|...+.-.+..+..|++.+.-+...+
T Consensus       233 ~~e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~  311 (1074)
T KOG0250|consen  233 KEEEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI  311 (1074)
T ss_pred             HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999887 56776555555444444444433     234567888888777777766666666666555544


Q ss_pred             hhh--------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhHHHhhhhHHH----
Q 003779          513 ESF--------------RNEYANVRLECNAADERAKILASEVIGLEEKALR-------LRSNELKLERQLENSQSE----  567 (796)
Q Consensus       513 e~l--------------~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lq-------LRS~eLKleKElE~l~~E----  567 (796)
                      +.+              +.|-++---||..|.+..+.+..|+..+++++..       +++.-=.++|++..++.+    
T Consensus       312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~  391 (1074)
T KOG0250|consen  312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE  391 (1074)
T ss_pred             HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            443              4566666677788888888888888777766543       333323334444444433    


Q ss_pred             ----HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          568 ----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       568 ----r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                          +...+.++.-|.+|.-.++..+..|.+|...++.+++
T Consensus       392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~  432 (1074)
T KOG0250|consen  392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK  432 (1074)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3444444455555555555555555555555555555

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.14  E-value=0.6  Score=55.19  Aligned_cols=129  Identities=22%  Similarity=0.312  Sum_probs=66.0

Q ss_pred             HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHhh-hhHHHHHH--------HHH---------hhhH
Q 003779          470 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELE-SFRNEYAN--------VRL---------ECNA  528 (796)
Q Consensus       470 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a---Q~~~le-~l~aErDa--------Aq~---------E~na  528 (796)
                      .++|-.||+.|-.+++.....-.+-|.-|..|++.++.   ++..+| .|.+|+-+        |+-         ||.+
T Consensus       462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e  541 (697)
T PF09726_consen  462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAE  541 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHH
Confidence            45566677777777766555555544444444433332   222222 33444433        222         3333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          529 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       529 A~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                            .+-.-+-.||.++.+||.+--..+-++-.+..|+..++.....-.+|-..|.+.|-+|||+-.+|+.-|.
T Consensus       542 ------~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs  611 (697)
T PF09726_consen  542 ------SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS  611 (697)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence                  2333344555666666543222233333344444333332122456777888889999998888876654

; GO: 0016021 integral to membrane

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.13  E-value=0.069  Score=52.90  Aligned_cols=116  Identities=22%  Similarity=0.282  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      .-.+.|++-+.++-..|-.++--|-....-.+.|-.+......+-+.....+..|+..+..|..+|+.....++.+..|+
T Consensus        74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~  153 (194)
T PF08614_consen   74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL  153 (194)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555667777766766667777777777778888888889999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779          520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL  555 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL  555 (796)
                      .+.+.+++.+.++.+.|..|=..|=+|.++.+..+-
T Consensus       154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA  189 (194)
T PF08614_consen  154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA  189 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997765543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.13  E-value=0.085  Score=56.39  Aligned_cols=115  Identities=20%  Similarity=0.292  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFR------NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN  563 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~------aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~  563 (796)
                      .+.+|+.++++.+.|.+.+..-|..+.      .+.+....+..+....-+.|..|+..||.+..++..+.-+++++++.
T Consensus        10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~   89 (314)
T PF04111_consen   10 LLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE   89 (314)
T ss_dssp             --------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777888888888888777776665      33444444555444445555555555555555555444444555555


Q ss_pred             hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          564 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       564 l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      +..+...+-+.+.....+..+++.+.+.|......++..|.
T Consensus        90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~  130 (314)
T PF04111_consen   90 LDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD  130 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444455444444444444444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=96.12  E-value=0.76  Score=52.40  Aligned_cols=127  Identities=13%  Similarity=0.239  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH----HHHHHHHHHHHHH
Q 003779          467 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA----DERAKILASEVIG  542 (796)
Q Consensus       467 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA----~ERaK~LAaEVV~  542 (796)
                      +.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.+....+-    .+--+.|..|-..
T Consensus        39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~  117 (475)
T PRK10361         39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN  117 (475)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444456666666655 55666666666666677777666666666666655544443333222    2222357778888


Q ss_pred             HHHHHHHHHhHhhhhHHH------hhhhHHHHHHHHHHHHhHH----HhhhhHHHHHHHHHH
Q 003779          543 LEEKALRLRSNELKLERQ------LENSQSEISSYKKKISSLE----KERQDFQSTIEALQE  594 (796)
Q Consensus       543 LEEk~lqLRS~eLKleKE------lE~l~~Er~S~~~q~ssi~----kER~~l~stIdaLQE  594 (796)
                      |-.++++-++..+.....      |.=+++.+..+++++..+.    ++|..|...|..|++
T Consensus       118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~  179 (475)
T PRK10361        118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ  179 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999998888875444      3448899999999999877    457788888877765

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.05  E-value=0.087  Score=56.31  Aligned_cols=126  Identities=24%  Similarity=0.347  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779          442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  521 (796)
Q Consensus       442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa  521 (796)
                      +..|+++++++..|+-.+++-|.+-+               .=......+.++..+++.|++|...-..+|+.+..|++.
T Consensus        11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~   75 (314)
T PF04111_consen   11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE   75 (314)
T ss_dssp             ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45688999999999999999998776               000112334556666666666554444444444444443


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779          522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  601 (796)
Q Consensus       522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  601 (796)
                                    |.+|...||++..++.       ++-+++-.+...+..++.....||+++..-++.++.+..    
T Consensus        76 --------------l~~el~~le~e~~~l~-------~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~----  130 (314)
T PF04111_consen   76 --------------LDQELEELEEELEELD-------EEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD----  130 (314)
T ss_dssp             --------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             --------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence                          3334444444444332       222244445555666666666666666666666666654    


Q ss_pred             HHHhhc
Q 003779          602 KLRKAS  607 (796)
Q Consensus       602 KLR~as  607 (796)
                      |||++.
T Consensus       131 ~L~ktN  136 (314)
T PF04111_consen  131 RLRKTN  136 (314)
T ss_dssp             CHHT--
T ss_pred             HHHhcC
Confidence            455443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.04  E-value=0.027  Score=55.73  Aligned_cols=131  Identities=24%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------------HHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779          477 NSSLTDSYNQQRSVVNQLKSEMEKLQEEI----------------------KVQLVELESFRNEYANVRLECNAADERAK  534 (796)
Q Consensus       477 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei----------------------~aQ~~~le~l~aErDaAq~E~naA~ERaK  534 (796)
                      |..|...||+....+..|+..-..|+.+.                      ..-...+..+..|...++..+..-..|..
T Consensus        19 ~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~   98 (194)
T PF08614_consen   19 FAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLV   98 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45677777777777777777766666531                      11122334455666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779          535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  607 (796)
Q Consensus       535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as  607 (796)
                      .+-.++..|+.++......--.+++++..+..++.....++....+-=+.|+.++.+||-+..+++.|++++.
T Consensus        99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~  171 (194)
T PF08614_consen   99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE  171 (194)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666555554444444555555566666666666665555556677777777777777777777543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.00  E-value=5.2  Score=47.95  Aligned_cols=122  Identities=22%  Similarity=0.370  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 003779          459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS  538 (796)
Q Consensus       459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAa  538 (796)
                      |+-.|.+.+......-.||+-|....++.+.....|.-+..+|+.||+-+-..=.-+-.+|       .       .|..
T Consensus        39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy-------s-------elEe  104 (717)
T PF09730_consen   39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY-------S-------ELEE  104 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------H-------HHHH
Confidence            3444555555555555666666665555555555555555555555444333222222222       2       2556


Q ss_pred             HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH-------HHHhHHHhhh----hHHHHHHHHHHHHHH
Q 003779          539 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKK-------KISSLEKERQ----DFQSTIEALQEEKKM  598 (796)
Q Consensus       539 EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~-------q~ssi~kER~----~l~stIdaLQEEKkl  598 (796)
                      |-|.|+..|--||++++    |.|++++|+.+..-       ++.-+.+-|.    +|.-.+++||.|...
T Consensus       105 ENislQKqvs~Lk~sQv----efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReq  171 (717)
T PF09730_consen  105 ENISLQKQVSVLKQSQV----EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQ  171 (717)
T ss_pred             HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777778888888888    45566666665554       4444444343    577788999988754

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.99  E-value=1.1  Score=55.80  Aligned_cols=131  Identities=11%  Similarity=0.122  Sum_probs=83.9

Q ss_pred             HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003779          475 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE  554 (796)
Q Consensus       475 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e  554 (796)
                      .|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|+.++..|..-++.|+......+.-+.+-..-.
T Consensus      1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~ 1684 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGS 1684 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33444455667777789999999999999988888888888888899999998888888877765544333332222233


Q ss_pred             hhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH-------HHHHHHHHHHHHHHHHHHh
Q 003779          555 LKLERQLENSQSEISSYKKKISSLEKERQDFQ-------STIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       555 LKleKElE~l~~Er~S~~~q~ssi~kER~~l~-------stIdaLQEEKklLqSKLR~  605 (796)
                      +-++.-+|.|+.|.+.+-.+...-+..=++|+       --|+.++.|+.-|..+|+.
T Consensus      1685 ~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1685 QAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence            44444555666665555544443333333333       2345556666667777764

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.97  E-value=1.6  Score=48.18  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHhHhhhhHHHhhhh------------HHHHHHHHHHHH-hHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779          539 EVIGLEEKALRLRSNELKLERQLENS------------QSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       539 EVV~LEEk~lqLRS~eLKleKElE~l------------~~Er~S~~~q~s-si~kER~~l~stIdaLQEEKklLqSKLR~  605 (796)
                      ++..|+.++.+++.+--.++.++.++            ...+.++..+.. .+..+...++..++.++++++.++.+|.+
T Consensus       237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~  316 (457)
T TIGR01000       237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK  316 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34444444444444444444444443            333333333333 45555556666666666666666666653


Q ss_pred             ----hccCCCc
Q 003779          606 ----ASGSGKS  612 (796)
Q Consensus       606 ----asa~gKa  612 (796)
                          ++-.|.+
T Consensus       317 ~~I~AP~dG~V  327 (457)
T TIGR01000       317 GVIKAPEDGVL  327 (457)
T ss_pred             CEEECCCCeEE
Confidence                4555554

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.95  E-value=1.2  Score=45.13  Aligned_cols=104  Identities=17%  Similarity=0.284  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HhHhhhhHHHhhhhHH
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL---RSNELKLERQLENSQS  566 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL---RS~eLKleKElE~l~~  566 (796)
                      .+..||++|+.++.......-.+..+..|--...--+..|.+....|..++...+.....|   ++.--.+++++..++-
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~  107 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW  107 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455554444443333333344444433333344444444444444444433333322   2222233556666666


Q ss_pred             HHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          567 EISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       567 Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      |-+....++..++.||+.|...++..-
T Consensus       108 e~evL~qr~~kle~ErdeL~~kf~~~i  134 (201)
T PF13851_consen  108 EHEVLEQRFEKLEQERDELYRKFESAI  134 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666665554443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.93  E-value=2.4  Score=43.45  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003779          442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  486 (796)
Q Consensus       442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq  486 (796)
                      ++.|++-||+.-..--.++..|..+..-++.+-.|..+|.++...
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~   47 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL   47 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777777777777777777777777777777777777766543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=95.92  E-value=5.7  Score=51.64  Aligned_cols=52  Identities=27%  Similarity=0.383  Sum_probs=30.5

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHH
Q 003779          521 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK  572 (796)
Q Consensus       521 aAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~  572 (796)
                      .+-.++.+|.+..+.|-+||..|-.+-.=++..+-++..+++.|..|..+..
T Consensus       728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~  779 (1822)
T KOG4674|consen  728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQ  779 (1822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667777777777777665555455555555555555555544443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.91  E-value=2.9  Score=50.34  Aligned_cols=70  Identities=23%  Similarity=0.285  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Q 003779          463 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER  532 (796)
Q Consensus       463 L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ER  532 (796)
                      |.+.+.=++-|-+++++|.-++=.--..+++.+..++.+++|..-+..+++-++..+|....+.+....+
T Consensus       331 l~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k  400 (775)
T PF10174_consen  331 LRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK  400 (775)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445556666666666665555555555555555555555555555555555555555444444333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.87  E-value=1.6  Score=47.15  Aligned_cols=9  Identities=11%  Similarity=0.342  Sum_probs=5.9

Q ss_pred             ccccccCCc
Q 003779          430 QHGFYSTKH  438 (796)
Q Consensus       430 ~~~F~s~~~  438 (796)
                      |.+||+.+.
T Consensus       101 F~EY~~a~~  109 (312)
T smart00787      101 FKEYFSASP  109 (312)
T ss_pred             HHHHHcCCH
Confidence            777776543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.85  E-value=2.1  Score=53.27  Aligned_cols=59  Identities=19%  Similarity=0.249  Sum_probs=36.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhh
Q 003779          686 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMA  744 (796)
Q Consensus       686 IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~ma  744 (796)
                      ++.+-.-|..+..|...+...|.........|+.+-+.++.|+++.++.|.-..++.-+
T Consensus       544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kV  602 (1293)
T KOG0996|consen  544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKV  602 (1293)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            33334444444446666666666666666666777777777777777766665555443

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=95.85  E-value=1.1  Score=45.26  Aligned_cols=134  Identities=19%  Similarity=0.260  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH------------HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 003779          459 LQRSLEASRALSESLAAENSSLTDSYN------------QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  526 (796)
Q Consensus       459 LqR~L~~s~~l~EsLa~ENsaLt~~yN------------qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~  526 (796)
                      |.+++..-..-++.+|..+..+.....            .+......+...+++++...+.+...|+..+..|+++-.+.
T Consensus        58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~  137 (236)
T cd07651          58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI  137 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444444444444444444444443            23334455566777888888888889999999999988888


Q ss_pred             hHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH--HHHHH
Q 003779          527 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKKM  598 (796)
Q Consensus       527 naA~ERaK~-LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ--EEKkl  598 (796)
                      +.+..+... ...|+.-++.++.+....--+++.+.+.+..+...++..+.      ..+....+.||  ||.+.
T Consensus       138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~Ri  206 (236)
T cd07651         138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEERI  206 (236)
T ss_pred             HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            887776433 34788899999999888888888888888888888888776      45677888888  44443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.84  E-value=0.079  Score=46.07  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  551 (796)
Q Consensus       487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR  551 (796)
                      ....+..|+..+.++.+.+.++..++..+..|||.+...+..|-+.+..|.+|+..|..++-..|
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r   67 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR   67 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34678899999999999999999999999999999999999999999999999999999865554

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.84  E-value=0.99  Score=55.34  Aligned_cols=167  Identities=21%  Similarity=0.290  Sum_probs=93.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003779          437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR  516 (796)
Q Consensus       437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~  516 (796)
                      .-.++...+..-|+++-++=-..+|++-..++-..+|.   ..+.+.++.++..+++|+.+++.+.+.++++...++.-.
T Consensus       738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~  814 (1174)
T KOG0933|consen  738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRE  814 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555566665555556666666655555553   356777888888888888888777777777766666666


Q ss_pred             HHHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHhHhhhhHHHhhhhHH--------------HH
Q 003779          517 NEYANVRLECNAADERAKILA--------------SEVIGLEEKALRLRSNELKLERQLENSQS--------------EI  568 (796)
Q Consensus       517 aErDaAq~E~naA~ERaK~LA--------------aEVV~LEEk~lqLRS~eLKleKElE~l~~--------------Er  568 (796)
                      -||.+.++|+.+-..--+.+.              .|+..|+.++...-.+.-|++.++...+.              +.
T Consensus       815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~  894 (1174)
T KOG0933|consen  815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ  894 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence            666666666655444333444              44444443333333333333333333222              22


Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779          569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  606 (796)
                      +.|.++.+..+.+|+.+.-.+++++.|++.+-.+++..
T Consensus       895 e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l  932 (1174)
T KOG0933|consen  895 EKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKL  932 (1174)
T ss_pred             HHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence            23333344444555555566666666665555555543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.78  E-value=1.3  Score=47.27  Aligned_cols=9  Identities=11%  Similarity=0.431  Sum_probs=5.4

Q ss_pred             ccccccCCc
Q 003779          430 QHGFYSTKH  438 (796)
Q Consensus       430 ~~~F~s~~~  438 (796)
                      |.+||+.+.
T Consensus       106 f~EY~~a~~  114 (325)
T PF08317_consen  106 FREYYTADP  114 (325)
T ss_pred             HHHHHcCCH
Confidence            666666643

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.78  E-value=1.5  Score=55.22  Aligned_cols=95  Identities=16%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      +++..++.+|++|.++.-+|.+=+..-+..+.-...   ..+..|-.....+.+++.+++.++.++..-...++.+..++
T Consensus       230 ~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (1353)
T TIGR02680       230 EQLDEYRDELERLEALERALRNFLQRYRRYARTMLR---RRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDART  306 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888888888887777777666666653322   23455666666666666666666666666666666666666


Q ss_pred             HHHHHhhhHHHHHHHHHH
Q 003779          520 ANVRLECNAADERAKILA  537 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LA  537 (796)
                      +.+..+...++++...|.
T Consensus       307 ~~le~~~~~l~~~~~~l~  324 (1353)
T TIGR02680       307 EALEREADALRTRLEALQ  324 (1353)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            666666666666555554

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.75  E-value=1.3  Score=42.86  Aligned_cols=127  Identities=19%  Similarity=0.297  Sum_probs=98.3

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHH
Q 003779          471 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE---VIGLEEKA  547 (796)
Q Consensus       471 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaE---VV~LEEk~  547 (796)
                      +.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.|.++..+..|.+.+-....-   +..|..+|
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri   82 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI   82 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
Confidence            567778899999999999999999999999999999999999999999999988888887776665543   33455554


Q ss_pred             HHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          548 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       548 lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      ..|       +.+|+....-+..+..++.-+...-+++..-+.+|..+..-+..|+-
T Consensus        83 q~L-------Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen   83 QLL-------EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            433       77777777777777777777777777777777777766666655554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=95.72  E-value=4.7  Score=48.29  Aligned_cols=243  Identities=22%  Similarity=0.250  Sum_probs=120.8

Q ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003779          476 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE--CNAADERAKILASEVIGLEEKALRLRSN  553 (796)
Q Consensus       476 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E--~naA~ERaK~LAaEVV~LEEk~lqLRS~  553 (796)
                      +|+.|.+.|-|   .|.+|.+++--+-.|..+-+-...+++.|.+++...  +-+-+|....|.+|=..|-.+.+.- |.
T Consensus       399 ~~ssl~~e~~Q---Rva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q-s~  474 (961)
T KOG4673|consen  399 EVSSLREEYHQ---RVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQ-SA  474 (961)
T ss_pred             cccchHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence            34555555544   467777777777777777777777788887777654  4456667777777777776665522 22


Q ss_pred             hhhh----HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCccccccccccc
Q 003779          554 ELKL----ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTST  629 (796)
Q Consensus       554 eLKl----eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsT  629 (796)
                      .+|-    .|+.+.+.   ...-.++..+.+|-..|...++.--|=-|.++..+.++.+.-+-.. .....++.|    .
T Consensus       475 iIkKLRAk~ke~etl~---~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~-~~~~~sr~~----~  546 (961)
T KOG4673|consen  475 IIKKLRAKIKEAETLE---EKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQK-DYYSNSRAL----A  546 (961)
T ss_pred             HHHHHHHHhhhhhHHH---HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHH----H
Confidence            2221    01111111   1112234444444444444443332222333333333222111100 000001111    1


Q ss_pred             ccccccccccccCCccccccCCCccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003779          630 EDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSS  709 (796)
Q Consensus       630 dDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~  709 (796)
                      ++|    ...-.+-+.++|.+          .     |+....-+   +--|.+|..++  .|..-+..=|..|...=..
T Consensus       547 ~~l----e~~~~a~qat~d~a----------~-----~Dlqk~nr---lkQdear~~~~--~lvqqv~dLR~~L~~~Eq~  602 (961)
T KOG4673|consen  547 AAL----EAQALAEQATNDEA----------R-----SDLQKENR---LKQDEARERES--MLVQQVEDLRQTLSKKEQQ  602 (961)
T ss_pred             HHH----HHHHHHHHHhhhhh----------h-----hhHHHHhh---hhhhHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            122    00000111111222          1     11111111   11344444443  4555555556666666666


Q ss_pred             HHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhhhccccCCCC
Q 003779          710 ELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPD  754 (796)
Q Consensus       710 esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~ma~e~~~a~~~d  754 (796)
                      +-++-+-|+.++-+|.|+|++...|-|-++.+-=+.--++.|+|.
T Consensus       603 aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE  647 (961)
T KOG4673|consen  603 AARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE  647 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence            677888999999999999999999999888775544444555553

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.70  E-value=0.83  Score=52.91  Aligned_cols=46  Identities=24%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 003779          686 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ  731 (796)
Q Consensus       686 IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~q  731 (796)
                      ..-|.+|=..|..++..--+.|.+....+.+|+++=..|+-+|+.+
T Consensus       323 ~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L  368 (546)
T KOG0977|consen  323 EKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKL  368 (546)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345555566667777777777777777777777777777666654

>PRK11281 hypothetical protein; Provisional

Probab=95.60  E-value=0.34  Score=59.86  Aligned_cols=51  Identities=14%  Similarity=0.170  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 003779          488 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS  538 (796)
Q Consensus       488 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAa  538 (796)
                      ...+.++..++.+.|+++...-..+......-++||....+|..|...+..
T Consensus       127 Eq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~  177 (1113)
T PRK11281        127 ESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN  177 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444555555566666666666554443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.57  E-value=2.1  Score=43.78  Aligned_cols=83  Identities=22%  Similarity=0.326  Sum_probs=38.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHhhhhHHHHHHHHHHH-------HhHHHhhhhHHH
Q 003779          522 VRLECNAADERAKILASEVIGLEEKALRLR-------SNELKLERQLENSQSEISSYKKKI-------SSLEKERQDFQS  587 (796)
Q Consensus       522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLR-------S~eLKleKElE~l~~Er~S~~~q~-------ssi~kER~~l~s  587 (796)
                      ...++..|.+|+..+...+..||+++..+.       ..+-++....+.+...+..+..++       ..++..=..|+.
T Consensus       125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~  204 (237)
T PF00261_consen  125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK  204 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555554432       222222222233333344444444       444444445555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 003779          588 TIEALQEEKKMMQSKLR  604 (796)
Q Consensus       588 tIdaLQEEKklLqSKLR  604 (796)
                      .|+.|.+++.-...+.+
T Consensus       205 ~id~le~eL~~~k~~~~  221 (237)
T PF00261_consen  205 EIDRLEDELEKEKEKYK  221 (237)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555544444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.57  E-value=1.8  Score=53.79  Aligned_cols=148  Identities=20%  Similarity=0.282  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779          442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  521 (796)
Q Consensus       442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa  521 (796)
                      ..-|+.-||..-.+++.+.-+++.++..-+.+-.|++.|...-+.-...+.   +.+..|+++-.+-..+...+..|+.-
T Consensus       414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~---e~~~~l~~~t~~~~~e~~~~ekel~~  490 (1293)
T KOG0996|consen  414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD---EILDSLKQETEGIREEIEKLEKELMP  490 (1293)
T ss_pred             HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            344556677777778888888888888777777777777766555443332   22223333333333333344444444


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779          522 VRLECNAADERAKILASEVIGLE-------EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  592 (796)
Q Consensus       522 Aq~E~naA~ERaK~LAaEVV~LE-------Ek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL  592 (796)
                      .....+.|..+.+....|..-|.       .++..+...-+.++..+++-+.+++++...+.+..-|+.++.+.+..|
T Consensus       491 ~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~  568 (1293)
T KOG0996|consen  491 LLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKL  568 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Confidence            44444444444444444443333       233334444444444444444444444444444444444444433333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.52  E-value=1.5  Score=50.20  Aligned_cols=160  Identities=14%  Similarity=0.215  Sum_probs=103.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 003779          437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR  516 (796)
Q Consensus       437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~  516 (796)
                      +-..++..|++.|.+.-.-=-.|  .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+.
T Consensus       253 ~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~  330 (569)
T PRK04778        253 DIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELK  330 (569)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            34778888888888733111111  3567777788888888888888877777777777778888888877777888888


Q ss_pred             HHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          517 NEYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       517 aErDaAq~E~n---aA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      .|.+...+.+.   .-.++.+.+..++..|++++..+...--+.....+.+.++......++..+++++..+...|..|.
T Consensus       331 ~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr  410 (569)
T PRK04778        331 EEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR  410 (569)
T ss_pred             HHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877732   235566667777777766666543332222333444555555556666666666666666666555


Q ss_pred             HHHHH
Q 003779          594 EEKKM  598 (796)
Q Consensus       594 EEKkl  598 (796)
                      .+-..
T Consensus       411 k~E~e  415 (569)
T PRK04778        411 KDELE  415 (569)
T ss_pred             HHHHH
Confidence            44333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.51  E-value=0.83  Score=55.95  Aligned_cols=163  Identities=16%  Similarity=0.231  Sum_probs=97.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003779          435 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  514 (796)
Q Consensus       435 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~  514 (796)
                      -+.+......|+..|+.+-+.=-+--+.+++.....+.|--|.++|.+-----...+.++...++-|..++..+.+.+..
T Consensus       782 ~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~  861 (1174)
T KOG0933|consen  782 KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK  861 (1174)
T ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556666666666655555566667777777777777777777655555566777777777888888888888888


Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779          515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  594 (796)
Q Consensus       515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE  594 (796)
                      +..+.+.++.+.+.-...-+..--|+-++.-++-...+.--..+-+.+++.+|+.++.+.-....++=..|....+-+-+
T Consensus       862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~  941 (1174)
T KOG0933|consen  862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGD  941 (1174)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhH
Confidence            88888888888777777777666666333333322222222222233344444444444444443333344444444444


Q ss_pred             HHH
Q 003779          595 EKK  597 (796)
Q Consensus       595 EKk  597 (796)
                      ||.
T Consensus       942 ek~  944 (1174)
T KOG0933|consen  942 EKR  944 (1174)
T ss_pred             HHH
Confidence            443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=95.50  E-value=1.8  Score=55.89  Aligned_cols=257  Identities=20%  Similarity=0.220  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003779          443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  522 (796)
Q Consensus       443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA  522 (796)
                      -.|+|-.++++.+.-.+.-.+...+.=-+++-.++..+...+=.-+..+.+|.+.+..++.+-..-.-.++..++|..+-
T Consensus        62 ~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l  141 (1822)
T KOG4674|consen   62 LRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEAL  141 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777777666667777777788888877888888888888777755444444445555566666


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH--------------HHHHHHHhHHHh----hhh
Q 003779          523 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS--------------SYKKKISSLEKE----RQD  584 (796)
Q Consensus       523 q~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~--------------S~~~q~ssi~kE----R~~  584 (796)
                      +.+...-.++.+.+-.-+-.||.+..+..+..+-.+..++++..|.+              .+..+|..+..+    =.+
T Consensus       142 ~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~  221 (1822)
T KOG4674|consen  142 ESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQ  221 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            65555555555555555555555555555555555544444444433              333444444333    334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCC
Q 003779          585 FQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLP  664 (796)
Q Consensus       585 l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllp  664 (796)
                      |...|..+++++.+++.+..-+...-+-        +.+-..-...+|--.+++.+++                .+-   
T Consensus       222 L~~~L~~~~~~~~~~q~~~~~l~q~~~e--------Ls~~ie~~~~~ls~~k~t~~s~----------------~~k---  274 (1822)
T KOG4674|consen  222 LEEKLSDLKESLAELQEKNKSLKQQNEE--------LSKKIESLNLELSKLKDTAESS----------------EEK---  274 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHH----------------HHH---
Confidence            5555555556666665555422110000        0000000111110011111111                001   


Q ss_pred             cCcccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779          665 ESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE  736 (796)
Q Consensus       665 e~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE  736 (796)
                            |    .+=..-|-+|-+=-...|.++..+..++.++|....+-++++...++|..-.|++..|-|+
T Consensus       275 ------f----~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~  336 (1822)
T KOG4674|consen  275 ------F----EKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLS  336 (1822)
T ss_pred             ------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                  1    0111223355566667788888888888888888888888888888877666666666554

>PF13166 AAA_13: AAA domain

Probab=95.49  E-value=1.7  Score=49.75  Aligned_cols=119  Identities=23%  Similarity=0.353  Sum_probs=55.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          484 YNQQRSVVNQLKSEMEKLQEEIKVQLVE-------------LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  550 (796)
Q Consensus       484 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~-------------le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL  550 (796)
                      +.+-...+.+++..++.+...+..-...             +..+....+.+...+.+..+....+..+...|..++...
T Consensus       324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~  403 (712)
T PF13166_consen  324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH  403 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555544443211             122233333333344444444555555555555555443


Q ss_pred             HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          551 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       551 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      .-.  +...+++.+..++..+.+++..+.++...+...+..++.+.+.|+.++.
T Consensus       404 ~~~--~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  455 (712)
T PF13166_consen  404 LIA--KLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK  455 (712)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222  2223333444455555555555555555555555555555554544443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.45  E-value=2  Score=43.46  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=17.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          441 DFAALEQHIEDLTQEKFALQRSLEA  465 (796)
Q Consensus       441 ~faaLqqhIeDLT~EKfaLqR~L~~  465 (796)
                      .+..++..|.++-.++-.|++.++.
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~   45 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEE   45 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777777777777776665554

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.42  E-value=2  Score=46.61  Aligned_cols=102  Identities=18%  Similarity=0.284  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          440 EDFAALEQHIEDLTQEKF-------ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  512 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKf-------aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  512 (796)
                      ..+.-||+.+|-|..||-       +|.-+|++++.-++.--.|-.+|-+----.....+.|.....+|..++++-..-+
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv   97 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV   97 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence            456778888898988874       4566777777777666655555554433333344445555555555554444444


Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779          513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKAL  548 (796)
Q Consensus       513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l  548 (796)
                      .-+-.-.       +.+..+...|..|+-.+..++-
T Consensus        98 ~~lEgQl-------~s~Kkqie~Leqelkr~KsELE  126 (307)
T PF10481_consen   98 NFLEGQL-------NSCKKQIEKLEQELKRCKSELE  126 (307)
T ss_pred             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322       3334444455555554444444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF13514 AAA_27: AAA domain

Probab=95.41  E-value=1.3  Score=54.21  Aligned_cols=42  Identities=19%  Similarity=0.218  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHh
Q 003779          692 LISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQ  733 (796)
Q Consensus       692 LisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQ  733 (796)
                      -|..++.+..++.+.++....++..+...-..+..+|+.+.+
T Consensus       453 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  494 (1111)
T PF13514_consen  453 TVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAA  494 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345555666666666666666666666665555555555544

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.38  E-value=1.4  Score=51.30  Aligned_cols=58  Identities=22%  Similarity=0.172  Sum_probs=42.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH-------HHHHHHhHHHHHHHHHh
Q 003779          686 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELLTAQNM  743 (796)
Q Consensus       686 IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsR-------KLE~qtQRLELltsq~m  743 (796)
                      +++.+++|.|+...-..+-..|....+.|-..|+.+-|+.+       +||...+.|.|..=+.|
T Consensus       448 ~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m  512 (581)
T KOG0995|consen  448 FSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSM  512 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888888888888888877777654       46777777666555554

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.38  E-value=1.8  Score=43.71  Aligned_cols=10  Identities=20%  Similarity=0.112  Sum_probs=4.2

Q ss_pred             ccccccccch
Q 003779          670 ALEGLAVNIP  679 (796)
Q Consensus       670 af~~~~~~Ip  679 (796)
                      .+.|+...|+
T Consensus       224 ~~~gs~s~i~  233 (302)
T PF10186_consen  224 TPSGSRSTII  233 (302)
T ss_pred             ccCccccchh
Confidence            3444444444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.33  E-value=6.6  Score=47.85  Aligned_cols=150  Identities=27%  Similarity=0.336  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779          446 EQHIEDLTQEKFALQRSLEASRALSESLAAENS-----SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  520 (796)
Q Consensus       446 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENs-----aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  520 (796)
                      |.-|.||-.||++|+-.|---+-+.++.-.|-+     .+|+.|   +-.|..|.+++..++.+|..-...+-.+..|..
T Consensus        47 eniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriy---Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq  123 (1265)
T KOG0976|consen   47 ENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIY---RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQ  123 (1265)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999776555556666555543     245555   346677777777777777666666666666666


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH----HHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          521 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY----KKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       521 aAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~----~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      +.|--...+.++.|.-.-|++.+-.++-       |++++|..-.+||-+.    ..+-..|..-+-+++..+..--+|+
T Consensus       124 ~lQ~ti~~~q~d~ke~etelE~~~srlh-------~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en  196 (1265)
T KOG0976|consen  124 KLQDTIQGAQDDKKENEIEIENLNSRLH-------KLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREK  196 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence            6666666666666655555554444333       2344444433333222    2222333344444445555555566


Q ss_pred             HHHHHHHHh
Q 003779          597 KMMQSKLRK  605 (796)
Q Consensus       597 klLqSKLR~  605 (796)
                      +.+.-|+.+
T Consensus       197 ~~le~k~~k  205 (1265)
T KOG0976|consen  197 KALEEKLEK  205 (1265)
T ss_pred             HHHHHHHHH
Confidence            655555553

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=95.31  E-value=1.4  Score=45.01  Aligned_cols=165  Identities=19%  Similarity=0.245  Sum_probs=95.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003779          439 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  513 (796)
Q Consensus       439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l----~EsLa-~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  513 (796)
                      ..+-+.|++.|++...+--.+++.|++-..-    .+.++ .--+.|..+.++.-..+.+++..+-.+..++..+....+
T Consensus        37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~  116 (240)
T PF12795_consen   37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE  116 (240)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence            3455677788888888877777777765432    11111 012457777888888888888888888888888888888


Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779          514 SFRNEYANVRLECNAADERAKILASE--VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  591 (796)
Q Consensus       514 ~l~aErDaAq~E~naA~ERaK~LAaE--VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda  591 (796)
                      .+......++....+++.+...+...  ...-+.+...|....--+.-++.-+..|..+......++...|+-+...++.
T Consensus       117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~  196 (240)
T PF12795_consen  117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR  196 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887777777776653000  1111222222222222222333333444444444444555555555555555


Q ss_pred             HHHHHHHHHHHH
Q 003779          592 LQEEKKMMQSKL  603 (796)
Q Consensus       592 LQEEKklLqSKL  603 (796)
                      ++.+...||..|
T Consensus       197 l~~~l~~Lq~~l  208 (240)
T PF12795_consen  197 LQQQLQALQNLL  208 (240)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.28  E-value=1.3  Score=48.26  Aligned_cols=163  Identities=20%  Similarity=0.291  Sum_probs=95.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH--
Q 003779          439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR--  516 (796)
Q Consensus       439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~--  516 (796)
                      -.|+.|+-.++++       -.|.|+=+-+|-+.|-..|..|+.++..-...++...+.|.+|+-|+..----|--+.  
T Consensus        61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~  133 (306)
T PF04849_consen   61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSND  133 (306)
T ss_pred             hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            3566666666665       4688999999999999999999999999999999999999999888654333322222  


Q ss_pred             HHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH-----------hhhhHH
Q 003779          517 NEYANVRLEC-------------------NAADERAKILASEVIGLEEKALRLRSNELKLERQ-----------LENSQS  566 (796)
Q Consensus       517 aErDaAq~E~-------------------naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKE-----------lE~l~~  566 (796)
                      .|-....-.+                   ..-.++.|.|..|-..|.+++.+|+......+.+           +..++.
T Consensus       134 ~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~  213 (306)
T PF04849_consen  134 DEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQ  213 (306)
T ss_pred             hhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcch
Confidence            1111111111                   2334455555555555555555555333322222           222222


Q ss_pred             HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          567 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       567 Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                      .+..+..++..-.-|=...+.+|-.|+.+.-.||.|+++...
T Consensus       214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~  255 (306)
T PF04849_consen  214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAA  255 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            223332222222222334456777777778888888886544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.22  E-value=1.1  Score=49.31  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA  474 (796)
Q Consensus       441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa  474 (796)
                      ....+.+.|.++.++...++..+...++..+.|-
T Consensus       198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~  231 (498)
T TIGR03007       198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK  231 (498)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666777777777777666666555544443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.16  E-value=5.1  Score=48.35  Aligned_cols=103  Identities=18%  Similarity=0.219  Sum_probs=87.1

Q ss_pred             HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779          470 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR  549 (796)
Q Consensus       470 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lq  549 (796)
                      -..|.++..+++..++....-+.-||..+...+++..--...++.|+.+++.+...|++++.+.-.++.|.-.+..++..
T Consensus       303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~  382 (775)
T PF10174_consen  303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED  382 (775)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHhHhhhhHHHhhhhHHHHHHHH
Q 003779          550 LRSNELKLERQLENSQSEISSYK  572 (796)
Q Consensus       550 LRS~eLKleKElE~l~~Er~S~~  572 (796)
                      +|...=+.+.++..++..++.+.
T Consensus       383 l~d~~d~~e~ki~~Lq~kie~Le  405 (775)
T PF10174_consen  383 LRDMLDKKERKINVLQKKIENLE  405 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766666666666665554444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=95.13  E-value=2.3  Score=44.22  Aligned_cols=115  Identities=23%  Similarity=0.272  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779          441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  520 (796)
Q Consensus       441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  520 (796)
                      -+..|+|+|.|+-.+       |.+++.-+.++-+.--.+-++||+....+..++..-+          .+|..=..+.+
T Consensus        25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~----------~Al~~g~E~LA   87 (225)
T COG1842          25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE----------LALQAGNEDLA   87 (225)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence            348999999998655       5555444444444555566677765555544443321          11111112222


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779          521 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  578 (796)
Q Consensus       521 aAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  578 (796)
                            .+|-++-+.|...+..++..+.+++....|+++.+..+...+..++.+...+
T Consensus        88 ------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l  139 (225)
T COG1842          88 ------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL  139 (225)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  3455566666666666666666666666666666666666666666655533

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=95.11  E-value=1  Score=46.88  Aligned_cols=108  Identities=24%  Similarity=0.292  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 003779          491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS  570 (796)
Q Consensus       491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S  570 (796)
                      |.++++++++.++++..+.-...-|..+       +..|.+-+..|+.+...+++...+|+..-.+..++-+.|..++..
T Consensus        14 L~q~eee~~~a~~~L~e~e~~a~~Leek-------~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e   86 (246)
T PF00769_consen   14 LRQMEEEMRRAQEALEESEETAEELEEK-------LKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE   86 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555544443333332223222       344555556777777778888888887777777777777777777


Q ss_pred             HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779          571 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       571 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~  605 (796)
                      +..++..+..++..-..+.+.||.+...++..+.+
T Consensus        87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~  121 (246)
T PF00769_consen   87 AEAEIARLEEESERKEEEAEELQEELEEAREDEEE  121 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777666665553

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.08  E-value=0.0059  Score=70.53  Aligned_cols=55  Identities=31%  Similarity=0.362  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 003779          687 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ  741 (796)
Q Consensus       687 dSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq  741 (796)
                      .....+|.+|+.|+..+..-+.........++..+..|.|++-..+.-.+.+-++
T Consensus       367 ~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~  421 (722)
T PF05557_consen  367 RELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQ  421 (722)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556777777777766666666666666666666666555555555555444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.99  E-value=2.4  Score=46.25  Aligned_cols=151  Identities=17%  Similarity=0.244  Sum_probs=86.8

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003779          434 YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  513 (796)
Q Consensus       434 ~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  513 (796)
                      .+......+.+||+-|.+|-+|-..|--...+-..-+.++-..-..|+...   ..++......|..|.+|+.-..-...
T Consensus       154 ~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~  230 (306)
T PF04849_consen  154 LSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENR  230 (306)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHH
Confidence            344455678899999999888888776655554444444444444444322   11122223344444444444444444


Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      ....|....+.+..+...|.|.++.|.+.|...+...+-.+-.+.       .|+.-++.+|.       ++...+...|
T Consensus       231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~-------aEL~elqdkY~-------E~~~mL~EaQ  296 (306)
T PF04849_consen  231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQ-------AELQELQDKYA-------ECMAMLHEAQ  296 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHH
Confidence            445555555555566667777777777777665555554444443       34444445554       5667788888


Q ss_pred             HHHHHHHH
Q 003779          594 EEKKMMQS  601 (796)
Q Consensus       594 EEKklLqS  601 (796)
                      ||.|.+.+
T Consensus       297 EElk~lR~  304 (306)
T PF04849_consen  297 EELKTLRK  304 (306)
T ss_pred             HHHHHhhC
Confidence            88887654

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=94.93  E-value=6.9  Score=44.75  Aligned_cols=148  Identities=23%  Similarity=0.267  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH-------H
Q 003779          460 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE-------R  532 (796)
Q Consensus       460 qR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~E-------R  532 (796)
                      ...|+..+..-+....|-..|.....-....+...|.++.++++....--..+.+|..|...++.++..+.+       -
T Consensus       287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~  366 (522)
T PF05701_consen  287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA  366 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence            344556666666666666666666666666777777777777776666666666666666666666644433       3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779          533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  607 (796)
Q Consensus       533 aK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as  607 (796)
                      .-.|...+..|..++.++|...-.++.++.+++.|+..++..+..++..=..++..+++-..--..+...++.+.
T Consensus       367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~  441 (522)
T PF05701_consen  367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALS  441 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345666666666666666666666667777777777777777776666666666777776655566666666433

Several sequences in this family are described as being myosin heavy chain-like.

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=94.88  E-value=4.1  Score=41.65  Aligned_cols=130  Identities=15%  Similarity=0.184  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  526 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~  526 (796)
                      .|..++..-..-++.+|.-+..|..+.+.....+           ..+...|+.++...+.+...|.-.+.-|.++-.+.
T Consensus        57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~  136 (239)
T cd07647          57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK  136 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555556666666666655555543333           34456666666666667777777777777776666


Q ss_pred             hHHHHHHHHH-----HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          527 NAADERAKIL-----ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       527 naA~ERaK~L-----AaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      ..|.......     ..|+.-++.++.+.+..--++..+-.....+...++.++.      ..+....+.+|
T Consensus       137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~------~~~~~~~~~~Q  202 (239)
T cd07647         137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE------SEHATACQVFQ  202 (239)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            6665332221     3577788888887777777777776666666666666665      34556777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.81  E-value=7.8  Score=42.56  Aligned_cols=41  Identities=37%  Similarity=0.528  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003779          443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS  483 (796)
Q Consensus       443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~  483 (796)
                      -.|.--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~   63 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA   63 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777788888888888888888888888899888888654

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=94.77  E-value=7.8  Score=47.28  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=38.5

Q ss_pred             chhhHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhh
Q 003779          678 IPHDQMRMIHNINALISELALEK------EELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN  745 (796)
Q Consensus       678 Ip~DQlR~IdSInaLisELa~ER------eravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~ma~  745 (796)
                      -.+.+-.||+-|++|++.|+-.|      +.+-.++.-+-.+|..|++         |.|+-+|++--+.+.+-
T Consensus       457 aIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE---------eiQethldyR~els~lA  521 (1265)
T KOG0976|consen  457 AIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE---------EIQETHLDYRSELSELA  521 (1265)
T ss_pred             HHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence            35788899999999999887655      4444555555556666654         34555666655555443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=94.77  E-value=2.4  Score=52.30  Aligned_cols=137  Identities=28%  Similarity=0.310  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779          463 LEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  535 (796)
Q Consensus       463 L~~s~~l~EsLa~ENsaL-------t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~  535 (796)
                      +....+..+.|..|-+++       ++.|+-|-..-..|+.+.++|+..++-...+++.+..|+.-++..+.+..+=.  
T Consensus       443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii--  520 (1041)
T KOG0243|consen  443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEII--  520 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            333444445555555544       44454444455599999999999999999999999999988777655544322  


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779          536 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       536 LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  606 (796)
                        .....+|.++.+.   ..++++.++....++.++.+++....+.=+.=+..++.++.+....-+-+-+.
T Consensus       521 --~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~  586 (1041)
T KOG0243|consen  521 --SQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGL  586 (1041)
T ss_pred             --HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHH
Confidence              2233444444433   67778888888888888888888777777777777777777665544444433

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.67  E-value=3.4  Score=50.88  Aligned_cols=178  Identities=25%  Similarity=0.351  Sum_probs=92.6

Q ss_pred             ccccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003779          428 ENQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  486 (796)
Q Consensus       428 e~~~~F~s~~~~~~faaL-------------------qqhIe--DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq  486 (796)
                      .+.--|...++-.+||.|                   ++|++  ||-++--+|++.+....+--+.|-+++++|....+.
T Consensus       141 ~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~  220 (1072)
T KOG0979|consen  141 DNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER  220 (1072)
T ss_pred             CchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            345569999999999965                   45554  556666778888887777777777777777655554


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----------
Q 003779          487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL-----------  555 (796)
Q Consensus       487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL-----------  555 (796)
                      -... ...++.+|.|+.-  --.+..+....||.+..+....|.+..+.|-.++..++.+.-.|++..=           
T Consensus       221 ~rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~  297 (1072)
T KOG0979|consen  221 VRER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR  297 (1072)
T ss_pred             HHHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH
Confidence            3322 1233333333210  1112233345555555555555555555555555444444444433111           


Q ss_pred             -------hhHHH---hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          556 -------KLERQ---LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       556 -------KleKE---lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                             |...-   +.....++.....+++.+.+.+.+.+..|..+.+..-.+|..|.++..
T Consensus       298 ~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~  360 (1072)
T KOG0979|consen  298 ELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED  360 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence                   11111   111333444444555555555555555555555555555555554433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.60  E-value=8.4  Score=45.26  Aligned_cols=159  Identities=23%  Similarity=0.313  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779          448 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL---KSEMEKLQEEIKVQLVELESFRNEYANVRL  524 (796)
Q Consensus       448 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qL---k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~  524 (796)
                      -|+.+..+.-.|.-.+.+..+-.+..-.++..+-..|--..-.+.=|   ..-|++|+.-+++-...+..|..+|+.++.
T Consensus       343 ~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~  422 (594)
T PF05667_consen  343 QIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRA  422 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333444444444444444444455555555555554333332222   345677777777777778888888877776


Q ss_pred             hhhHHHHHHH------------------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH--HHHHHHHHHH----hHHH
Q 003779          525 ECNAADERAK------------------ILASEVIGLEEKALRLRSNELKLERQLENSQS--EISSYKKKIS----SLEK  580 (796)
Q Consensus       525 E~naA~ERaK------------------~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~--Er~S~~~q~s----si~k  580 (796)
                      .+-+--++.+                  .|-.++..+++++..---..=++.++++++..  -|..|.+.+-    -|.|
T Consensus       423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~K  502 (594)
T PF05667_consen  423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRK  502 (594)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHH
Confidence            5554444433                  22333333333333221111133344444322  2444555443    3344


Q ss_pred             hhhhHHHH---HHHHHHHHHHHHHHHHhh
Q 003779          581 ERQDFQST---IEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       581 ER~~l~st---IdaLQEEKklLqSKLR~a  606 (796)
                      -+.++.+.   ...||.|...++-||..+
T Consensus       503 Qk~eI~KIl~DTr~lQkeiN~l~gkL~Rt  531 (594)
T PF05667_consen  503 QKEEIEKILSDTRELQKEINSLTGKLDRT  531 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            55554444   356788888888888854

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

Probab=94.55  E-value=5.6  Score=41.36  Aligned_cols=130  Identities=15%  Similarity=0.207  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN  517 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~--------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  517 (796)
                      .|..++..-..=++.+|..+..|.++...+-.                    ....+...++.+|..+..+...|+..+.
T Consensus        61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk  140 (258)
T cd07655          61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK  140 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45555555555566666666666666554422                    2334555566666666677777888888


Q ss_pred             HHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779          518 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE  590 (796)
Q Consensus       518 ErDaAq~E~naA~ERaK~L-------AaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId  590 (796)
                      -|+.+=.+...|..+....       ..|+.-++.++.+....--+++++-.........+...|.      ..+-.+++
T Consensus       141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~------~~m~~~~~  214 (258)
T cd07655         141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYM------EDMEQVFD  214 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHH
Confidence            8888777777777665432       3677777777777766666666665555555555444444      34667888


Q ss_pred             HHH
Q 003779          591 ALQ  593 (796)
Q Consensus       591 aLQ  593 (796)
                      .||
T Consensus       215 ~~Q  217 (258)
T cd07655         215 KCQ  217 (258)
T ss_pred             HHH
Confidence            888

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.53  E-value=11  Score=42.95  Aligned_cols=61  Identities=13%  Similarity=0.023  Sum_probs=41.5

Q ss_pred             HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          544 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       544 EEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      .++++.+++.+..-++.+..+..|+..+.+++..-.+.++.=..++-+...+++-+..+++
T Consensus       184 q~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         184 QAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3455556666666667777788888888888887777776666666666666665555555

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.52  E-value=7.3  Score=43.12  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=17.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779          516 RNEYANVRLECNAADERAKILASEVIGLEEKAL  548 (796)
Q Consensus       516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l  548 (796)
                      ..++..+...+..---+.+.+..++..|+.++.
T Consensus       260 ~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~  292 (498)
T TIGR03007       260 EKQLDALRLRYTDKHPDVIATKREIAQLEEQKE  292 (498)
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence            444444444444444555666666666666643

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.38  E-value=2.3  Score=41.37  Aligned_cols=29  Identities=21%  Similarity=0.391  Sum_probs=12.0

Q ss_pred             HHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 003779          474 AAENSSLTDSYNQQRSVVNQLKSEMEKLQ  502 (796)
Q Consensus       474 a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq  502 (796)
                      ..|-+.+-++.+.....+..++++...++
T Consensus        94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   94 QEELDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33333344444444444444444443333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.34  E-value=0.04  Score=63.89  Aligned_cols=138  Identities=26%  Similarity=0.346  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 003779          452 LTQEKFALQRSLEASRALSESLAA---ENSSLTDSYNQQRSVVNQLK---SEMEKLQEEIKVQLVELESFRNEYANVRLE  525 (796)
Q Consensus       452 LT~EKfaLqR~L~~s~~l~EsLa~---ENsaLt~~yNqQ~~~v~qLk---~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E  525 (796)
                      |-+||-+|++-|++...+-+.|+.   +|..|-+.++.-...+....   +--+.+-+.|       ..++.+.....-+
T Consensus       286 LeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l-------~~lq~~~~~L~ek  358 (722)
T PF05557_consen  286 LEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARAL-------VQLQQENASLTEK  358 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-------HHHHHHHHHHHHH
Confidence            345555555555555555555544   45555554444333222211   0011111111       1222222333333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          526 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       526 ~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      ++......+.|..++..|+.++.++...-.+++..++.+...+.++.++..++.+||+-|...|+..-.|-
T Consensus       359 ~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~  429 (722)
T PF05557_consen  359 LGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE  429 (722)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33344444444555555555555555555555666667777778888888888888888888777766554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.31  E-value=7.7  Score=40.32  Aligned_cols=164  Identities=23%  Similarity=0.322  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003779          443 AALEQHIEDLTQE--------KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  514 (796)
Q Consensus       443 aaLqqhIeDLT~E--------KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~  514 (796)
                      ..|+..|..+..-        +-.|.+.|...+...+.++.|+..|.-..+.....+..++...+.....+..-...+..
T Consensus        28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~  107 (312)
T PF00038_consen   28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELES  107 (312)
T ss_dssp             HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456666666554        45577888888888888888888887777777777777777777766666666666666


Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHhH-------hhh------hHHHhh-----------hhHH
Q 003779          515 FRNEYANVRLECNAADERAKILASEVIGLE----EKALRLRSN-------ELK------LERQLE-----------NSQS  566 (796)
Q Consensus       515 l~aErDaAq~E~naA~ERaK~LAaEVV~LE----Ek~lqLRS~-------eLK------leKElE-----------~l~~  566 (796)
                      ++.+.+.+-....+...+...|.-|+.-|.    +++..||..       +++      +..-|.           ..+.
T Consensus       108 lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~  187 (312)
T PF00038_consen  108 LRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNRE  187 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhh
Confidence            666666666666666666666665554432    233333321       111      011111           1222


Q ss_pred             HH-HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779          567 EI-SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       567 Er-~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  606 (796)
                      +. ..|..++..+......-...+..+++|.+.+..++..+
T Consensus       188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l  228 (312)
T PF00038_consen  188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSL  228 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHh
Confidence            22 23445666666666667778888888888888887643

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.30  E-value=6.8  Score=45.97  Aligned_cols=90  Identities=27%  Similarity=0.295  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHhhh
Q 003779          451 DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR---NEYANVRLECN  527 (796)
Q Consensus       451 DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~---aErDaAq~E~n  527 (796)
                      +-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++|+++++...-..+-+.   .=..-.+.-|.
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~  404 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE  404 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            334444555666666666677777777777777777777777777777777777665544443332   11122233344


Q ss_pred             HHHHHHHHHHHHH
Q 003779          528 AADERAKILASEV  540 (796)
Q Consensus       528 aA~ERaK~LAaEV  540 (796)
                      +..+|...|+.+-
T Consensus       405 ~s~~rl~~L~~qW  417 (594)
T PF05667_consen  405 ASEQRLVELAQQW  417 (594)
T ss_pred             HHHHHHHHHHHHH
Confidence            4455555555443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.30  E-value=3.8  Score=42.09  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779          459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  521 (796)
Q Consensus       459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa  521 (796)
                      ..+.=.++++-.+.+++|-..|.+.|-+...++..|+...++|+..+..|..+++.+..+.+.
T Consensus        33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~   95 (251)
T PF11932_consen   33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ   95 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334446677788889999999999999988899999998888888888888888877665554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=94.18  E-value=2.8  Score=44.71  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLRS  552 (796)
Q Consensus       489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~--E~naA~ERaK~LAaEVV~LEEk~lqLRS  552 (796)
                      ..+.-++.+++++++++..-..+|..|+.+..-.-.  +.....+....|..+...++.++..+|+
T Consensus       170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~  235 (362)
T TIGR01010       170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS  235 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345566666666666666666666666665433221  2234455666677777777777766664

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.15  E-value=17  Score=45.96  Aligned_cols=29  Identities=24%  Similarity=0.156  Sum_probs=22.5

Q ss_pred             HHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 003779          715 SKLKDLNNELSRKLEHQTQRLELLTAQNM  743 (796)
Q Consensus       715 ~dLk~lN~ELsRKLE~qtQRLELltsq~m  743 (796)
                      +++.+++..+-++|.+.++++|..-+|--
T Consensus       789 ~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~  817 (1317)
T KOG0612|consen  789 KMLEKQLKKLLDELAELKKQLEEENAQLR  817 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66778888888888888888887666543

>PF13514 AAA_27: AAA domain

Probab=94.08  E-value=8.4  Score=47.43  Aligned_cols=51  Identities=18%  Similarity=0.394  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCC
Q 003779          566 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFG  616 (796)
Q Consensus       566 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~e  616 (796)
                      ..+.++.++...+++.+..+...++.+.++...++.+++.+...|.+++.+
T Consensus       452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~  502 (1111)
T PF13514_consen  452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEE  502 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            578888899999999999999999999999999999999999988875443

>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

Probab=94.05  E-value=4.9  Score=41.90  Aligned_cols=120  Identities=17%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH-----HHHHHHH
Q 003779          468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI-----LASEVIG  542 (796)
Q Consensus       468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~-----LAaEVV~  542 (796)
                      .|++.|-.+-..|..=.+.|......+...|+.+|.-...+...|+.-+..|.++-.+...|......     -..|+.-
T Consensus        78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK  157 (242)
T cd07671          78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEK  157 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence            46666766666677777888889999999999999999999999999999999888888777543211     2356778


Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      ++.++.+.+.+--++.++-+....+...++..+.      ..+....+.+|
T Consensus       158 ~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~------~~~~~~~~~~Q  202 (242)
T cd07671         158 SQNKAKQCRDAATEAERVYKQNIEQLDKARTEWE------TEHILTCEVFQ  202 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            8888887777777777777766666666666666      33556677777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.04  E-value=9.1  Score=45.86  Aligned_cols=110  Identities=23%  Similarity=0.292  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh----------hhhHHHhhhh
Q 003779          495 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS  564 (796)
Q Consensus       495 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e----------LKleKElE~l  564 (796)
                      .+-+-.++.++..|-.++..+..+.++..-+++--..|.+..+.++..++++..++ +.+          |.+.-|++.+
T Consensus       164 dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~-~~~~qq~a~~~~ql~~~~ele~i  242 (716)
T KOG4593|consen  164 DSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEER-ADHEQQNAELEQQLSLSEELEAI  242 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhHHHHH
Confidence            33344445555555555555566666665565555556555555555555544422 111          1222233332


Q ss_pred             HHHHHHHHHHHHhHH-------Hhhh---hHHHHHHHHHHHHHHHHHHHHh
Q 003779          565 QSEISSYKKKISSLE-------KERQ---DFQSTIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       565 ~~Er~S~~~q~ssi~-------kER~---~l~stIdaLQEEKklLqSKLR~  605 (796)
                      ...+..+..++.-+.       .|=-   +..-++.-||||++.||+||+.
T Consensus       243 ~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~  293 (716)
T KOG4593|consen  243 NKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR  293 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            222222222211111       1111   2234677899999999999985

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.95  E-value=11  Score=44.59  Aligned_cols=77  Identities=25%  Similarity=0.377  Sum_probs=47.8

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh-----h---
Q 003779          518 EYANVRLECNAADERAKILASEV-------IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE-----R---  582 (796)
Q Consensus       518 ErDaAq~E~naA~ERaK~LAaEV-------V~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE-----R---  582 (796)
                      +|-..+-|+-+-..|-..|-+|-       |.|+..+-.||.+++    |-|++++|+.++.-++..+-.-     |   
T Consensus       150 qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQV----EyEglkheikRleEe~elln~q~ee~~~Lk~  225 (772)
T KOG0999|consen  150 QRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQV----EYEGLKHEIKRLEEETELLNSQLEEAIRLKE  225 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555554444       455556777888777    6788999999988887765332     1   


Q ss_pred             ---hhHHHHHHHHHHHHHH
Q 003779          583 ---QDFQSTIEALQEEKKM  598 (796)
Q Consensus       583 ---~~l~stIdaLQEEKkl  598 (796)
                         .+|.-.++.||.|...
T Consensus       226 IAekQlEEALeTlq~EReq  244 (772)
T KOG0999|consen  226 IAEKQLEEALETLQQEREQ  244 (772)
T ss_pred             HHHHHHHHHHHHHHhHHHH
Confidence               2345567777766543

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=93.94  E-value=12  Score=42.32  Aligned_cols=68  Identities=19%  Similarity=0.258  Sum_probs=49.4

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003779          456 KFALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  523 (796)
Q Consensus       456 KfaLqR~L~-~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq  523 (796)
                      -.+|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-.......+..+-|-.-
T Consensus       105 ~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~  173 (561)
T KOG1103|consen  105 AASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLE  173 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444443 57888999999988887777666778888999999999999877766655544444433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.67  E-value=4.8  Score=42.04  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=10.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Q 003779          583 QDFQSTIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       583 ~~l~stIdaLQEEKklLqSKLR~  605 (796)
                      ..++..+...|+.......+|..
T Consensus       106 ~~lq~el~~ar~~~~~ak~~L~~  128 (246)
T PF00769_consen  106 EELQEELEEAREDEEEAKEELLE  128 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445544445555544

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=93.67  E-value=7.4  Score=43.13  Aligned_cols=53  Identities=21%  Similarity=0.384  Sum_probs=35.3

Q ss_pred             hhHHHhhhhHHHHHHHHHHHHhH--------------------HHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          556 KLERQLENSQSEISSYKKKISSL--------------------EKERQDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       556 KleKElE~l~~Er~S~~~q~ssi--------------------~kER~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                      .++.++..++.++..++.++..+                    ...+..+...++.++.++..++..|..+..
T Consensus       240 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~  312 (457)
T TIGR01000       240 TIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE  312 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555433                    234557888999999999999999986544

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.67  E-value=19  Score=42.63  Aligned_cols=124  Identities=23%  Similarity=0.349  Sum_probs=79.4

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          471 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  550 (796)
Q Consensus       471 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL  550 (796)
                      |+|-.|-.+=-.-||++   |-.|+-++.|+++++.--..+++.+..+-.--       .+-...+..+...|-.++..+
T Consensus        92 esLLqESaakE~~yl~k---I~eleneLKq~r~el~~~q~E~erl~~~~sd~-------~e~~~~~E~qR~rlr~elKe~  161 (772)
T KOG0999|consen   92 ESLLQESAAKEEYYLQK---ILELENELKQLRQELTNVQEENERLEKVHSDL-------KESNAAVEDQRRRLRDELKEY  161 (772)
T ss_pred             HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhcchhhHHHHHHHHHHHHHH
Confidence            56777777777788875   56778888888888888888887775543221       122233444555555555555


Q ss_pred             HhHhhhhHHHhhhhHHHHHHHHHHHHhHHH---hhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          551 RSNELKLERQLENSQSEISSYKKKISSLEK---ERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       551 RS~eLKleKElE~l~~Er~S~~~q~ssi~k---ER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      +--|-++-.+-..|.+|-=++.++++.+-.   |=..+.-+|.+|-||..+|-+.+-
T Consensus       162 KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~e  218 (772)
T KOG0999|consen  162 KFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLE  218 (772)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            555555556666666666667777766521   223456678889888888776554

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=93.63  E-value=14  Score=45.48  Aligned_cols=60  Identities=25%  Similarity=0.269  Sum_probs=36.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHH--hhHHH-----HHHhHHHHHHH-----HHHHhHHHHHHHHHhhh
Q 003779          686 IHNINALISELALEKEELVQALSSELA--QSSKL-----KDLNNELSRKL-----EHQTQRLELLTAQNMAN  745 (796)
Q Consensus       686 IdSInaLisELa~EReravsaLa~esr--~~~dL-----k~lN~ELsRKL-----E~qtQRLELltsq~ma~  745 (796)
                      -|+|.+||-.+.+|=.+.+..|.++-.  ..+.+     --.|+.+..+|     ..++.-|+-++=+.|+.
T Consensus       684 ~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld~ema~  755 (980)
T KOG0980|consen  684 SDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQYLQTLNQLGEELLPKELDIDQELLGNLLDIEMAE  755 (980)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHhHHhccccchhhHHHHHHHHHHHHHH
Confidence            578899999999998888888876532  22222     12234444444     34444445466666654

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.55  E-value=19  Score=42.24  Aligned_cols=105  Identities=18%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA--------------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEI  505 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~--------------ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei  505 (796)
                      .+.+.+-..|++-..++-.|+..+.+.++=.+.|-.              +-.....++|+--+.++.+++....|+.|+
T Consensus        92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~  171 (546)
T KOG0977|consen   92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL  171 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            455555566666666665555555444332222211              111123344444444444444444444444


Q ss_pred             HHHHHH-------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003779          506 KVQLVE-------LESFRNEYANVRLECNAADERAKILASEVIGLE  544 (796)
Q Consensus       506 ~aQ~~~-------le~l~aErDaAq~E~naA~ERaK~LAaEVV~LE  544 (796)
                      .-=..+       |..++.+.|...+-.+++.-+.+.|-.|+.-+.
T Consensus       172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            333333       344444444444444444455555544444443

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=93.39  E-value=10  Score=38.48  Aligned_cols=76  Identities=16%  Similarity=0.229  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQR------------SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  525 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~------------~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E  525 (796)
                      ++..+...-..-++.+|..+..+.+.++.+-            .....+..++++++.++......++..+.-|+.+-.+
T Consensus        62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke  141 (251)
T cd07653          62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE  141 (251)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666556566667777777777666332            2233344555555666666666666666666666655


Q ss_pred             hhHHHHHH
Q 003779          526 CNAADERA  533 (796)
Q Consensus       526 ~naA~ERa  533 (796)
                      ...|....
T Consensus       142 ~~~a~~k~  149 (251)
T cd07653         142 AEKAKQKY  149 (251)
T ss_pred             HHHHHHHH
Confidence            55555443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.39  E-value=7.3  Score=36.90  Aligned_cols=34  Identities=29%  Similarity=0.585  Sum_probs=22.0

Q ss_pred             HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          571 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       571 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      ...+-..+.++...+..-++-|.+.=++|+..|-
T Consensus        96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344555555667777777788888887765

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=93.38  E-value=2.5  Score=44.68  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 003779          586 QSTIEALQEEKKMMQSKLRK----ASGSGKS  612 (796)
Q Consensus       586 ~stIdaLQEEKklLqSKLR~----asa~gKa  612 (796)
                      +..+.+++.+++.++..|.+    ++-.|.+
T Consensus       189 ~a~~~~~~a~l~~a~~~l~~~~I~AP~dG~V  219 (346)
T PRK10476        189 VAQRAAREAALAIAELHLEDTTVRAPFDGRV  219 (346)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCEEECCCCcEE
Confidence            34455556666666666653    4555554

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.28  E-value=0.024  Score=65.69  Aligned_cols=29  Identities=17%  Similarity=0.265  Sum_probs=0.0

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779          521 NVRLECNAADERAKILASEVIGLEEKALR  549 (796)
Q Consensus       521 aAq~E~naA~ERaK~LAaEVV~LEEk~lq  549 (796)
                      -.+.....-.++++.|-...+.||+++.+
T Consensus       329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~  357 (713)
T PF05622_consen  329 DLKRQVKELEEDNAVLLETKAMLEEELKK  357 (713)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555555543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.23  E-value=18  Score=42.72  Aligned_cols=109  Identities=22%  Similarity=0.201  Sum_probs=72.6

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HH---HHhhhhHHHHHH
Q 003779          453 TQEKFA-LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QL---VELESFRNEYAN  521 (796)
Q Consensus       453 T~EKfa-LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a-------Q~---~~le~l~aErDa  521 (796)
                      ++||.+ |++.+.+.++.+.++-.-+.++.-.-++-...+.+..+++|.|+.++..       |.   ..++.+..|+..
T Consensus       264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~  343 (581)
T KOG0995|consen  264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK  343 (581)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            445554 9999999999999999988888888888777777777777766655432       22   234445667777


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHh
Q 003779          522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL  561 (796)
Q Consensus       522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKEl  561 (796)
                      ..++.+.+.-..-.|..+|-.++-++....-...|.-.++
T Consensus       344 l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~  383 (581)
T KOG0995|consen  344 LKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDL  383 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777666665554443333333333

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.21  E-value=5.8  Score=37.79  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=29.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779          438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  504 (796)
Q Consensus       438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  504 (796)
                      ..++...+=..|-+|       ....++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus        29 ~~~~~~~vin~i~~L-------l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere   88 (151)
T PF11559_consen   29 SEDNDVRVINCIYDL-------LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE   88 (151)
T ss_pred             ccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555566554       334445555555555555555444444444444455555444444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.18  E-value=14  Score=44.35  Aligned_cols=146  Identities=20%  Similarity=0.212  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003779          441 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  508 (796)
Q Consensus       441 ~faaLqqhIeDLT~EKfaLqR--~L~~s~~----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ  508 (796)
                      +.-.|-|++.+++++..+=.|  ++.-...          --+.+-..+.+|-..-=--|+.....++..-+|-+|+.-.
T Consensus       401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek  480 (698)
T KOG0978|consen  401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK  480 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777777776555544  2222222          1112222233333333345666777777777777777777


Q ss_pred             HHHhhhhHHHHHHHHHhhhHHHH-------HHHHHHH-------HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 003779          509 LVELESFRNEYANVRLECNAADE-------RAKILAS-------EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  574 (796)
Q Consensus       509 ~~~le~l~aErDaAq~E~naA~E-------RaK~LAa-------EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q  574 (796)
                      .-..=.++.|++.+.+..+...+       +...|..       .+..||++...+-+..=++.+++.-+..-+..+.+.
T Consensus       481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~  560 (698)
T KOG0978|consen  481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK  560 (698)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence            77777777888777776665543       3333333       333444444444444444444444444434444433


Q ss_pred             HHhHHHhhhhHH
Q 003779          575 ISSLEKERQDFQ  586 (796)
Q Consensus       575 ~ssi~kER~~l~  586 (796)
                      ..-+.....+|+
T Consensus       561 ~~e~~~~~~~Lq  572 (698)
T KOG0978|consen  561 AQEAKQSLEDLQ  572 (698)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.15  E-value=5.5  Score=48.10  Aligned_cols=111  Identities=23%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779          445 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  524 (796)
Q Consensus       445 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~  524 (796)
                      +.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+..+.--|+-|+.+..-+|+--..||+=-++
T Consensus        97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~  176 (769)
T PF05911_consen   97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR  176 (769)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33444445555555666665555555566666666666677777777777777777778888888888888888888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779          525 ECNAADERAKILASEVIGLEEKALRLRSNEL  555 (796)
Q Consensus       525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL  555 (796)
                      .+..|.-|=..=-.-|..||.+|.|||..-=
T Consensus       177 ~ae~a~kqhle~vkkiakLEaEC~rLr~l~r  207 (769)
T PF05911_consen  177 AAEAASKQHLESVKKIAKLEAECQRLRALVR  207 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888877766666778899999999998753

The function of this family is unknown.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=93.13  E-value=9.4  Score=45.06  Aligned_cols=94  Identities=23%  Similarity=0.316  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003779          443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  522 (796)
Q Consensus       443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA  522 (796)
                      -.|+.-|+.|-.|+-.|..-|+.+.+       +|+.|..-..+|...+.+|...+++++.+..-+..-|+.+..++.. 
T Consensus        83 ~~Lq~E~~~L~kElE~L~~qlqaqv~-------~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t-  154 (617)
T PF15070_consen   83 QQLQAEAEHLRKELESLEEQLQAQVE-------NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKAT-  154 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH-
Confidence            46777777777777777766665444       4555555556888889999999999998877777777777777665 


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          523 RLECNAADERAKILASEVIGLEEKA  547 (796)
Q Consensus       523 q~E~naA~ERaK~LAaEVV~LEEk~  547 (796)
                         +..|..+++.|-..+.+|++..
T Consensus       155 ---~SRAlsQN~eLK~QL~Elq~~F  176 (617)
T PF15070_consen  155 ---ASRALSQNRELKEQLAELQDAF  176 (617)
T ss_pred             ---HHHHHHhHHHHHHHHHHHHHHH
Confidence               3557888888888888888743

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.02  E-value=18  Score=42.24  Aligned_cols=42  Identities=26%  Similarity=0.135  Sum_probs=33.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 003779          685 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR  726 (796)
Q Consensus       685 ~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsR  726 (796)
                      -|++.+++|.||--+=+-+-..|..+.+.|-.+|+.|.+.-+
T Consensus       488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~  529 (622)
T COG5185         488 DIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELV  529 (622)
T ss_pred             HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            367778888888888888888888888888888877766544

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.00  E-value=1.6  Score=53.65  Aligned_cols=99  Identities=20%  Similarity=0.266  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhHH
Q 003779          489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLRSNEL-------KLER  559 (796)
Q Consensus       489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~--E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL-------KleK  559 (796)
                      -.++.+-.++|+|.+++.|-+-..--+.+|=--.+.  |.++..++.+.|.-|+..+++++.++...-.       .+.+
T Consensus       404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~  483 (1041)
T KOG0243|consen  404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE  483 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            578889999999999999888777666554333233  6788899999999999999999888877666       4455


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHH
Q 003779          560 QLENSQSEISSYKKKISSLEKERQDFQS  587 (796)
Q Consensus       560 ElE~l~~Er~S~~~q~ssi~kER~~l~s  587 (796)
                      +++.++..+.....++....+|=++++.
T Consensus       484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~  511 (1041)
T KOG0243|consen  484 EKEKLKSKLQNKNKELESLKEELQQAKA  511 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555544444444333333

>PRK01156 chromosome segregation protein; Provisional

Probab=92.79  E-value=26  Score=41.85  Aligned_cols=18  Identities=17%  Similarity=0.410  Sum_probs=9.3

Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 003779          440 EDFAALEQHIEDLTQEKF  457 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKf  457 (796)
                      .+...|..-|+++..++-
T Consensus       483 ~~i~~l~~~~~~l~~~~~  500 (895)
T PRK01156        483 EKIREIEIEVKDIDEKIV  500 (895)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455555555555544433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=92.64  E-value=12  Score=37.44  Aligned_cols=34  Identities=24%  Similarity=0.263  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          443 AALEQHIEDLTQEKFALQRSLEASRALSESLAAE  476 (796)
Q Consensus       443 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E  476 (796)
                      ..|+|+|.||-..=-.+.+++.+.......|..+
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~   59 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERK   59 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999888777777777776666555443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.48  E-value=4.5  Score=38.75  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=37.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 003779          486 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  533 (796)
Q Consensus       486 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERa  533 (796)
                      -..+.|+.|+..+.+++-|+.+-...++.+..+++.+..|....+.++
T Consensus        13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~   60 (120)
T PF12325_consen   13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN   60 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678899999999999988888888888888888666666555554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=92.42  E-value=3.5  Score=48.50  Aligned_cols=40  Identities=13%  Similarity=0.281  Sum_probs=23.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       480 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      +.+++-+....+.-|.+++.++++++.....+++.|+.+.
T Consensus       258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~  297 (726)
T PRK09841        258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR  297 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3444444444555666666666666666666666666554

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=92.39  E-value=0.84  Score=39.34  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHH---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          500 KLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  552 (796)
Q Consensus       500 ~Lq~Ei~aQ~~~---le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS  552 (796)
                      -|+.||+|....   |..+++..-++...+.+|..|++.|..||..|++++-.+|+
T Consensus         5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen    5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            356677766654   44568888889999999999999999999999999988876

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.37  E-value=14  Score=37.63  Aligned_cols=86  Identities=17%  Similarity=0.305  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 003779          454 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  533 (796)
Q Consensus       454 ~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERa  533 (796)
                      +|--.+.+-.++....+..+..||..|+.---.....+.+|+.++..++.+           +.-..+++..........
T Consensus        34 eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd-----------K~~L~~~k~rl~~~ek~l  102 (201)
T PF13851_consen   34 EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD-----------KQSLQNLKARLKELEKEL  102 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence            333333334444555666666666666655544444555555544444332           333444555555566666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 003779          534 KILASEVIGLEEKALRL  550 (796)
Q Consensus       534 K~LAaEVV~LEEk~lqL  550 (796)
                      +.|.||-..|+.++.++
T Consensus       103 ~~Lk~e~evL~qr~~kl  119 (201)
T PF13851_consen  103 KDLKWEHEVLEQRFEKL  119 (201)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666666666544

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=92.37  E-value=8.3  Score=44.45  Aligned_cols=60  Identities=17%  Similarity=0.331  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHH
Q 003779          516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI  575 (796)
Q Consensus       516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~  575 (796)
                      ..=|-..+-+..+..++...+..+...+-+.+..||..|.++++.+..++.++..+++.+
T Consensus       371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l  430 (560)
T PF06160_consen  371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL  430 (560)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444455555555555555555555555555555555555554444444433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=92.35  E-value=8.8  Score=47.68  Aligned_cols=85  Identities=25%  Similarity=0.313  Sum_probs=65.1

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779          520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  599 (796)
                      +-+.-...++.+-++.|..|-.-||+++..+|..-     |-..+..||-.|.+++--+..+|+-.++-++.|++|-.-|
T Consensus       260 ~fykdRveelkedN~vLleekeMLeeQLq~lrars-----e~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL  334 (1195)
T KOG4643|consen  260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS-----EGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL  334 (1195)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            33445566778888899999999999998876554     2233445566777888888899999999999999999988


Q ss_pred             HHHHHhhccC
Q 003779          600 QSKLRKASGS  609 (796)
Q Consensus       600 qSKLR~asa~  609 (796)
                      |..-+++.++
T Consensus       335 q~q~eqL~~~  344 (1195)
T KOG4643|consen  335 QVQKEQLDGQ  344 (1195)
T ss_pred             HHHHHHhhhh
Confidence            8877765554

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=92.27  E-value=17  Score=41.40  Aligned_cols=29  Identities=34%  Similarity=0.578  Sum_probs=19.5

Q ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 003779          440 EDFAALEQHIEDLTQ-EKFALQRSLEASRA  468 (796)
Q Consensus       440 ~~faaLqqhIeDLT~-EKfaLqR~L~~s~~  468 (796)
                      .++..|++-|.+|+. ++-.++++|+.+.+
T Consensus       258 ~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~  287 (582)
T PF09731_consen  258 ERIDALQKELAELKEEEEEELERALEEQRE  287 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667776666665 45577788877764

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=92.14  E-value=24  Score=42.67  Aligned_cols=106  Identities=20%  Similarity=0.298  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH----
Q 003779          494 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS----  569 (796)
Q Consensus       494 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~----  569 (796)
                      .+.++|..++.-+.|+.-|-   .++   +.++...+..+..|...+..||.+....-+.--.+.++.+.|+.+.+    
T Consensus       138 ~q~ELee~q~~Hqeql~~Lt---~aH---q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~  211 (739)
T PF07111_consen  138 SQRELEEAQRLHQEQLSSLT---QAH---QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE  211 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            35566666665555544333   322   22334445555555555555555444333222222333333333333    


Q ss_pred             ----------HHHHHH-H---------hHHHhhhhHHHHHHHHHHHH-------HHHHHHHHh
Q 003779          570 ----------SYKKKI-S---------SLEKERQDFQSTIEALQEEK-------KMMQSKLRK  605 (796)
Q Consensus       570 ----------S~~~q~-s---------si~kER~~l~stIdaLQEEK-------klLqSKLR~  605 (796)
                                ++++-+ .         .-+.||..|..+|..|||++       .+||+|+..
T Consensus       212 ~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS  274 (739)
T PF07111_consen  212 ELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQS  274 (739)
T ss_pred             HHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      233222 1         12578899999999999988       566666663

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=92.01  E-value=0.045  Score=65.25  Aligned_cols=122  Identities=20%  Similarity=0.305  Sum_probs=0.0

Q ss_pred             HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          472 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  551 (796)
Q Consensus       472 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR  551 (796)
                      .|..|.+.++-..-.+...+.+|.....+|..++......++.+..|+|+++.+|.........|..+...+.+++..++
T Consensus       353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le  432 (859)
T PF01576_consen  353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELE  432 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            35555555655555566666666666666666777777777778888888888888877777777777777777777665


Q ss_pred             hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          552 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       552 S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      -..-.+..++..+..-.+...+.+..+++.+-.|...++-|+
T Consensus       433 re~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~  474 (859)
T PF01576_consen  433 RENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQ  474 (859)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence            544444555544444444333333333333333333333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=92.00  E-value=5.9  Score=41.07  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHh----hccCCCc
Q 003779          589 IEALQEEKKMMQSKLRK----ASGSGKS  612 (796)
Q Consensus       589 IdaLQEEKklLqSKLR~----asa~gKa  612 (796)
                      +..++.+.+.++..|.+    ++-.|.+
T Consensus       188 i~~~~~~l~~a~~~l~~~~I~AP~~G~V  215 (334)
T TIGR00998       188 VQEAKERLKTAWLALKRTVIRAPFDGYV  215 (334)
T ss_pred             HHHHHHHHHHHHHHhhCcEEEcCCCcEE
Confidence            45555555666666653    5566664

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=91.97  E-value=15  Score=40.10  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=17.3

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          580 KERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       580 kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      .+...+...+..++.+...++..|.
T Consensus       227 ~~~~~~~~~l~~~~~~l~~~~~~l~  251 (421)
T TIGR03794       227 KELETVEARIKEARYEIEELENKLN  251 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666777777777777777774

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=91.95  E-value=0.046  Score=65.17  Aligned_cols=140  Identities=21%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779          492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  571 (796)
Q Consensus       492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~  571 (796)
                      ..+...+.+++..|+--...++-....++.++..+..+..|++.|..|+..|+..+..+-...=.++.++..+.+++..+
T Consensus       570 ~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l  649 (859)
T PF01576_consen  570 EEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNEL  649 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666677766666666666666666666666777777888888888888877777666667788888888888888


Q ss_pred             HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCccccccccccccccccccccc
Q 003779          572 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTL  639 (796)
Q Consensus       572 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~  639 (796)
                      ..+..++..++..|...|..|+.++...++-++.  +.+|.      -....||..-+++|...+..+
T Consensus       650 ~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~--~~ek~------kka~~~~~~l~~eL~~Eq~~~  709 (859)
T PF01576_consen  650 TSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEA--AEEKA------KKAQAQAAQLAEELRQEQDHN  709 (859)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH------HHhHhHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888777777773  33333      111237777777775554444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=91.86  E-value=4.7  Score=45.82  Aligned_cols=99  Identities=16%  Similarity=0.158  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 003779          491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS  570 (796)
Q Consensus       491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S  570 (796)
                      ..+++.++++|..+++-+..+.+.+.++.+.-+.+..+...-......|.-.|+++..+++-..+.++-..+       .
T Consensus         8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~-------~   80 (459)
T KOG0288|consen    8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEK-------T   80 (459)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence            345556666666666666666666666666666666666666666667777777777777766665322222       2


Q ss_pred             HHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          571 YKKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       571 ~~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      ...++.-++.+|-+++.+|-.|+|.+
T Consensus        81 ~t~~~~~~en~~~r~~~eir~~~~q~  106 (459)
T KOG0288|consen   81 LTVDVLIAENLRIRSLNEIRELREQK  106 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22333344445555555555555443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=91.86  E-value=12  Score=35.67  Aligned_cols=59  Identities=19%  Similarity=0.356  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  550 (796)
Q Consensus       492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqL  550 (796)
                      ..|...+.+++.++......++.++...+.++.++..+.++-+.|..++..++..+..+
T Consensus        55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~  113 (151)
T PF11559_consen   55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE  113 (151)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444455555555555555555555555555555554444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.82  E-value=9.3  Score=45.71  Aligned_cols=78  Identities=19%  Similarity=0.265  Sum_probs=45.5

Q ss_pred             HHHHHhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779          471 ESLAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL  548 (796)
Q Consensus       471 EsLa~ENsaLt~~y-NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~l  548 (796)
                      +-|..--.-|.+.| -.+..+-.++++.+..|+.+++.|+..+..+..|++..+....+..||-+..-.--..|+.|+.
T Consensus       539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~  617 (717)
T PF10168_consen  539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD  617 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444554 4455556677777777888888888888877777777655444444444444333344444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []

Probab=91.65  E-value=20  Score=37.68  Aligned_cols=72  Identities=22%  Similarity=0.282  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003779          468 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE  545 (796)
Q Consensus       468 ~l~EsLa~ENsaLt~~yNqQ~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEE  545 (796)
                      ..+++|-..-..+++.+|.-+|  .|.+||..++.++..       ++..+.+...|+..+..|..+--..|.||-.|=.
T Consensus         9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~-------l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLq   81 (207)
T PF05546_consen    9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDE-------LEAARQEVREAKAAYDDAIQQRSSSQREVNELLQ   81 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666778888898886  455555555555555       5555555555555555566666667788877644


Q ss_pred             H
Q 003779          546 K  546 (796)
Q Consensus       546 k  546 (796)
                      +
T Consensus        82 R   82 (207)
T PF05546_consen   82 R   82 (207)
T ss_pred             c
Confidence            3

The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=91.62  E-value=39  Score=41.09  Aligned_cols=107  Identities=24%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhH----HHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH
Q 003779          438 HNEDFAALEQHIEDLTQEKFA---LQRSLEASRALSESLAAENSS----LTDSYNQQRSVVNQLKSEMEKLQEE-IKVQL  509 (796)
Q Consensus       438 ~~~~faaLqqhIeDLT~EKfa---LqR~L~~s~~l~EsLa~ENsa----Lt~~yNqQ~~~v~qLk~~mE~Lq~E-i~aQ~  509 (796)
                      +++-+++|+..=+.|..+-++   ..+-|-..-+-+++|...|-.    |..--|....++ .=|.+||++++| |....
T Consensus       451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il-~~Kee~Ek~~~E~I~k~~  529 (961)
T KOG4673|consen  451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSIL-RDKEETEKLLQETIEKHQ  529 (961)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            678899999888888877664   344555555556665554442    222333333322 235667766555 55566


Q ss_pred             HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003779          510 VELESFRNEYANVRLECNAADERAKILASEVIGLEE  545 (796)
Q Consensus       510 ~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEE  545 (796)
                      +.+...+.+|.+.|-...+-.+|+..+++=..++-.
T Consensus       530 ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~  565 (961)
T KOG4673|consen  530 AELTRQKDYYSNSRALAAALEAQALAEQATNDEARS  565 (961)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            667777777777666666666666666666555544

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=91.58  E-value=28  Score=39.89  Aligned_cols=24  Identities=25%  Similarity=0.094  Sum_probs=17.5

Q ss_pred             cccccccCcccchHHHHHHHHHHh
Q 003779          758 THDHTAYADEGDEVVERVLGWIMK  781 (796)
Q Consensus       758 ~~~~~~~~degdevvervlgwimk  781 (796)
                      +.-++.-.-.|-|-|-||++|--+
T Consensus       354 ~~~~t~q~~~Greyv~rv~sagny  377 (499)
T COG4372         354 RRPATRQSPSGREYVTRVTSAGNY  377 (499)
T ss_pred             hhhhhccCCCCCCeeEeecccCcc
Confidence            444566667888989999998544

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=91.57  E-value=18  Score=45.60  Aligned_cols=62  Identities=16%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779          530 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  591 (796)
Q Consensus       530 ~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda  591 (796)
                      ..|...|++|...|+.++..++...+-..+-.+=++..++=+.+++..++.+=+.++..|+.
T Consensus       172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~  233 (1109)
T PRK10929        172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS  233 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777777777776665555444444444444445555555554444444444444

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.51  E-value=14  Score=42.50  Aligned_cols=65  Identities=25%  Similarity=0.269  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          532 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       532 RaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      |.+.|+-|+..|-+.+.+||+..=|+..+..+..+.++.++-++.-.++.|-.+-..+-+-|+||
T Consensus       305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek  369 (502)
T KOG0982|consen  305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK  369 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44556666666666666666666666666666666666666666555555555444444444444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.50  E-value=33  Score=40.02  Aligned_cols=72  Identities=26%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHhHhhhhHHH
Q 003779          492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-----------ILASEVIGLEEKALRLRSNELKLERQ  560 (796)
Q Consensus       492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK-----------~LAaEVV~LEEk~lqLRS~eLKleKE  560 (796)
                      ..+..+++.|+.++.......+.+..++.+.+.++..|..+..           .++.|...|+.++.+++...-+.+++
T Consensus       205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~  284 (650)
T TIGR03185       205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ  284 (650)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555444444444444444444444444444433           34444555555555555444444444


Q ss_pred             hhh
Q 003779          561 LEN  563 (796)
Q Consensus       561 lE~  563 (796)
                      +.+
T Consensus       285 l~~  287 (650)
T TIGR03185       285 LRE  287 (650)
T ss_pred             HHH
Confidence            433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=91.49  E-value=8.4  Score=33.17  Aligned_cols=69  Identities=16%  Similarity=0.198  Sum_probs=26.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          484 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-----NEYANVRLECNAADERAKILASEVIGLEEKALRLRS  552 (796)
Q Consensus       484 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~-----aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS  552 (796)
                      +.+....+.+....+++|+..+......+....     .++-+...-+.....+...+..++..++.++.+.|-
T Consensus         7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~   80 (123)
T PF02050_consen    7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE   80 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444333333333222     333443333333334444444444444444433333

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.45  E-value=18  Score=44.39  Aligned_cols=89  Identities=20%  Similarity=0.216  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHhhhHHHHHHHH
Q 003779          459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV---RLECNAADERAKI  535 (796)
Q Consensus       459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA---q~E~naA~ERaK~  535 (796)
                      +.-.++.-+.....|--||+.|-..|-++-+...+|+++..-|+.++..-....-.+..+.++.   --+.++|...+|.
T Consensus       669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~  748 (970)
T KOG0946|consen  669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKK  748 (970)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHH
Confidence            3334444455677788888888888888888888888888877777651111111111111111   1234556666666


Q ss_pred             HHHHHHHHHHHH
Q 003779          536 LASEVIGLEEKA  547 (796)
Q Consensus       536 LAaEVV~LEEk~  547 (796)
                      |-.+-..|++++
T Consensus       749 l~~~q~~l~~~L  760 (970)
T KOG0946|consen  749 LENDQELLTKEL  760 (970)
T ss_pred             HHHHHHHHHHHH
Confidence            666666666666

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.39  E-value=23  Score=42.82  Aligned_cols=125  Identities=18%  Similarity=0.181  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhhHHHhhhh
Q 003779          488 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN---ELKLERQLENS  564 (796)
Q Consensus       488 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~---eLKleKElE~l  564 (796)
                      ...++.|+.+++.|+..+.......+....|...++.|..--.++......+...--.-+.+||.-   .+=.+.....-
T Consensus       161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w  240 (739)
T PF07111_consen  161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW  240 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
Confidence            345667777777777777776666666777777777777666666666655544443335555431   22112222233


Q ss_pred             HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH--hhccCCCc
Q 003779          565 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR--KASGSGKS  612 (796)
Q Consensus       565 ~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR--~asa~gKa  612 (796)
                      .-|+..+...+.-+.+||+.|+.|++=||--...|..-|.  .-....|+
T Consensus       241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kv  290 (739)
T PF07111_consen  241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKV  290 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4566677777777778888888888888877766665554  33444455

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=91.37  E-value=11  Score=38.58  Aligned_cols=89  Identities=22%  Similarity=0.269  Sum_probs=55.2

Q ss_pred             HHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          474 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  551 (796)
Q Consensus       474 a~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR  551 (796)
                      --+|=+|+.+|-..  ..-..+|...+++|+.+++.+.-.++.+-.+|-..|.++   -...+.|...-..+-.+..++-
T Consensus       119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~---~~~L~~Le~~W~~~v~kn~eie  195 (221)
T PF05700_consen  119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA---GEELRYLEQRWKELVSKNLEIE  195 (221)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence            34555677777433  335578888899999999999999999988888877653   3333444444444444444444


Q ss_pred             hHhhhhHHHhhhhH
Q 003779          552 SNELKLERQLENSQ  565 (796)
Q Consensus       552 S~eLKleKElE~l~  565 (796)
                      .-+.+++.|+..++
T Consensus       196 ~a~~~Le~ei~~l~  209 (221)
T PF05700_consen  196 VACEELEQEIEQLK  209 (221)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444433333

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=91.35  E-value=19  Score=37.33  Aligned_cols=131  Identities=13%  Similarity=0.123  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003779          457 FALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  524 (796)
Q Consensus       457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~  524 (796)
                      ..|..++..-..-++.+|.-+..|...-..            |...-..++..+++++.-+......+...+..|..+-.
T Consensus        58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k  137 (239)
T cd07658          58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR  137 (239)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555556666666555554432            22233445555666666665666666667777777666


Q ss_pred             hhhHHHHHHH--------------------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 003779          525 ECNAADERAK--------------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  584 (796)
Q Consensus       525 E~naA~ERaK--------------------~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~  584 (796)
                      |...|..+..                    .-..|..-|+.++.+.+....|++.+.......+..++.++.      ..
T Consensus       138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~------~~  211 (239)
T cd07658         138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWE------SA  211 (239)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence            6666665431                    233566777777777777777777777776666666666665      34


Q ss_pred             HHHHHHHHH
Q 003779          585 FQSTIEALQ  593 (796)
Q Consensus       585 l~stIdaLQ  593 (796)
                      +...++.+|
T Consensus       212 ~~~~~~~~Q  220 (239)
T cd07658         212 LRKGLNQYE  220 (239)
T ss_pred             HHHHHHHHH
Confidence            566777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=91.19  E-value=35  Score=41.36  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=17.6

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHH
Q 003779          471 ESLAAENSSLTDSYNQQRSVVNQLKS  496 (796)
Q Consensus       471 EsLa~ENsaLt~~yNqQ~~~v~qLk~  496 (796)
                      +.|..+.+++.+++......+.++.+
T Consensus       228 ~~l~~e~e~l~~~~~el~~~~~~~~~  253 (908)
T COG0419         228 EELEQEIEALEERLAELEEEKERLEE  253 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667777777777776666666666

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=91.12  E-value=1.9  Score=37.68  Aligned_cols=65  Identities=18%  Similarity=0.211  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779          535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  599 (796)
                      .|.+|+..|.+++.++-..-=+.+-++..+..|++++.+++..+-.+=+.|..++++|+.|.+..
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47778888888887775555556667777888888888888877666677777777777665443

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=90.93  E-value=23  Score=37.08  Aligned_cols=114  Identities=12%  Similarity=0.147  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH-----HHHHHHHH
Q 003779          467 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA-----KILASEVI  541 (796)
Q Consensus       467 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERa-----K~LAaEVV  541 (796)
                      ..|+++|..+-..|..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+.     -....|+.
T Consensus        78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~  157 (240)
T cd07672          78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQE  157 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence            3466666666554555557777788888999999999988888888888888887666666655442     12256888


Q ss_pred             HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 003779          542 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK  580 (796)
Q Consensus       542 ~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k  580 (796)
                      -++.++.+.+..--|++++-+....+...++..+..-|+
T Consensus       158 K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~  196 (240)
T cd07672         158 KLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHV  196 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999888888888888888888888887774444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.88  E-value=2  Score=38.99  Aligned_cols=66  Identities=18%  Similarity=0.297  Sum_probs=42.6

Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                      ||.||.++=-.--=++-+++.++++-..+..++..+..-|..|..+.+.|++|...-|.|||.+.+
T Consensus         9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422          9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444332222223444444444445556666667777888899999999999999999996543

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=90.85  E-value=11  Score=43.50  Aligned_cols=28  Identities=32%  Similarity=0.259  Sum_probs=15.2

Q ss_pred             cCCCCCCcCCcccccccccCCCCCCCCc
Q 003779          169 YDSSNSSKSGFQGIEESQSKGNDSFPKV  196 (796)
Q Consensus       169 ~~s~~ss~s~~~~~~~~Qs~~~~sslK~  196 (796)
                      |-|.|++..-=||+.-+=.+-.-+++|.
T Consensus        43 ~~sgnp~ve~t~GiiHLyk~n~~~s~~~   70 (493)
T KOG0804|consen   43 YSSGNPSVEETHGIIHLYKKNSHSSLKN   70 (493)
T ss_pred             ccCCCCceeeeceeEEEEecCccccccc
Confidence            3445566666666665555544444443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.81  E-value=19  Score=42.27  Aligned_cols=12  Identities=0%  Similarity=-0.044  Sum_probs=6.8

Q ss_pred             HHhhHHHHHHHH
Q 003779          685 MIHNINALISEL  696 (796)
Q Consensus       685 ~IdSInaLisEL  696 (796)
                      ..|.++.|...|
T Consensus       526 ~~Ea~r~lr~~l  537 (754)
T TIGR01005       526 AEEELRVKEEAV  537 (754)
T ss_pred             chHHHHHHHHHH
Confidence            355566665555

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=90.72  E-value=29  Score=38.04  Aligned_cols=41  Identities=15%  Similarity=0.304  Sum_probs=16.7

Q ss_pred             hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779          561 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  601 (796)
Q Consensus       561 lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  601 (796)
                      +..++.+++-|-.++--+.+..++++..+..+|.+.+-+..
T Consensus       202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k  242 (294)
T COG1340         202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK  242 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444444444444444443333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=90.72  E-value=18  Score=35.66  Aligned_cols=80  Identities=25%  Similarity=0.351  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779          492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  571 (796)
Q Consensus       492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~  571 (796)
                      .-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+..-.+..+.-.|+.++--+|+.--.+.++++..+..++.+
T Consensus        20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL   99 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL   99 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555666666666666666666666666666666666555555555554444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=90.71  E-value=10  Score=32.68  Aligned_cols=47  Identities=23%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779          489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  535 (796)
Q Consensus       489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~  535 (796)
                      ..+.....-+..|...|..+...++.+..++..++..+.+|.-+.|.
T Consensus        45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~   91 (123)
T PF02050_consen   45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK   91 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444433333

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=90.67  E-value=36  Score=38.97  Aligned_cols=35  Identities=37%  Similarity=0.403  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 003779          442 FAALEQHIEDLTQEKFALQRSL-EASRALSESLAAE  476 (796)
Q Consensus       442 faaLqqhIeDLT~EKfaLqR~L-~~s~~l~EsLa~E  476 (796)
                      ...+++-|+|+...+-.|+-.. ++.+.|++.|+.-
T Consensus        89 l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~  124 (420)
T COG4942          89 LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAAL  124 (420)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555554444444443 5555666666554

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=90.55  E-value=5.1  Score=48.20  Aligned_cols=44  Identities=30%  Similarity=0.257  Sum_probs=24.7

Q ss_pred             CccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHHHH
Q 003779          652 LPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEK  700 (796)
Q Consensus       652 ~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~ER  700 (796)
                      +++---+..+++|+.|.|+ .-.+-.|+    --++-|++=|..+.+|+
T Consensus       344 d~~~~hs~~dl~~psG~~a-~~lAmmlq----~~ldain~eirliqeEk  387 (916)
T KOG0249|consen  344 DRETLHSSADLLSPSGASA-QTLAMMLQ----EQLDAINKEIRLIQEEK  387 (916)
T ss_pred             chhhhhccccccCcchhhh-hhhhhhcc----cCCCcccchhhHhHhhh
Confidence            3444445557788889981 11112333    22456777777777776

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=90.51  E-value=6.3  Score=39.41  Aligned_cols=93  Identities=20%  Similarity=0.312  Sum_probs=66.2

Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH-HHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779          513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ-SEISSYKKKISSLEKERQDFQSTIEA  591 (796)
Q Consensus       513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~-~Er~S~~~q~ssi~kER~~l~stIda  591 (796)
                      ++.+.|++..+.|+.+-......+..||..|+.+..+.|..-....+...++. .++..++.+..-++-+=.-++..-.-
T Consensus        23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q  102 (159)
T PF05384_consen   23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ  102 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999888877788877754 34555555555444444444444444


Q ss_pred             HHHHHHHHHHHHHh
Q 003779          592 LQEEKKMMQSKLRK  605 (796)
Q Consensus       592 LQEEKklLqSKLR~  605 (796)
                      |+.....|+-+|++
T Consensus       103 Lr~rRD~LErrl~~  116 (159)
T PF05384_consen  103 LRERRDELERRLRN  116 (159)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555554

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.38  E-value=3.5  Score=42.41  Aligned_cols=24  Identities=13%  Similarity=0.160  Sum_probs=10.6

Q ss_pred             HHHHHhHHHhhhhHHHHHHHHHHH
Q 003779          572 KKKISSLEKERQDFQSTIEALQEE  595 (796)
Q Consensus       572 ~~q~ssi~kER~~l~stIdaLQEE  595 (796)
                      ..++..+..+.+.+...++++|+.
T Consensus       145 ~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        145 KNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333443444444444445555543

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=90.35  E-value=11  Score=37.66  Aligned_cols=111  Identities=25%  Similarity=0.348  Sum_probs=63.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA  547 (796)
Q Consensus       468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~  547 (796)
                      .||-.+..|-+.|.++|=.-  +|..|==.+          -.+||.|    |++.       .++.....|+..|.+..
T Consensus         3 ~lA~~Ig~EfE~lId~~G~e--~v~~LmP~V----------V~vLE~L----e~~~-------~~n~~~~~e~~~L~~d~   59 (158)
T PF09744_consen    3 DLASSIGKEFERLIDRYGEE--AVKGLMPKV----------VRVLELL----ESLA-------SRNQEHEVELELLREDN   59 (158)
T ss_pred             HHHHHHHHHHHHHHHHhChh--HHHHHHHHH----------HHHHHHH----HHHH-------HhhhhhhhHHHHHHHHH
Confidence            57788888888888888542  333332222          1122222    2211       12233334555555555


Q ss_pred             HHHHhHhhhhHHHhhhhHHHHHHHHHHHH----hHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          548 LRLRSNELKLERQLENSQSEISSYKKKIS----SLEKERQDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       548 lqLRS~eLKleKElE~l~~Er~S~~~q~s----si~kER~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                      .+|..+-- .+|+      .+..+..++.    ....|+.++..-|+.||++.+.|+.++++.+.
T Consensus        60 e~L~~q~~-~ek~------~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~  117 (158)
T PF09744_consen   60 EQLETQYE-REKE------LRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD  117 (158)
T ss_pred             HHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            55533221 1222      2233333333    56688889999999999999999999997544

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.17  E-value=3.3  Score=42.61  Aligned_cols=73  Identities=18%  Similarity=0.317  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779          494 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  573 (796)
Q Consensus       494 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~  573 (796)
                      ++..+.+|++|++.=..+|+.+..++          +.+...|+..+..++..+.+|+.+-=++.++++.++.|++.++.
T Consensus        91 ~~~rlp~le~el~~l~~~l~~~~~~~----------~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~  160 (206)
T PRK10884         91 LRTRVPDLENQVKTLTDKLNNIDNTW----------NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL  160 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666544444444333332          24555555555555555554444444444455555555444444


Q ss_pred             HHH
Q 003779          574 KIS  576 (796)
Q Consensus       574 q~s  576 (796)
                      ++.
T Consensus       161 ~~~  163 (206)
T PRK10884        161 QLD  163 (206)
T ss_pred             HHH
Confidence            444

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=90.12  E-value=7.7  Score=46.79  Aligned_cols=84  Identities=20%  Similarity=0.298  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      -+.+|...|++...--.|-++.|...|.+-..-.++.|+.-|   .+.+.|..|.++++++|..+.++++.+..-+++|.
T Consensus       174 e~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAl---e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr  250 (916)
T KOG0249|consen  174 ELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAAL---EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLR  250 (916)
T ss_pred             HHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            344555555555544555566666666544444444444433   23445666667777777777777777777777766


Q ss_pred             HHHHHHH
Q 003779          594 EEKKMMQ  600 (796)
Q Consensus       594 EEKklLq  600 (796)
                      -|.+.|.
T Consensus       251 ~e~~qL~  257 (916)
T KOG0249|consen  251 GELDQLR  257 (916)
T ss_pred             HHHHHHH
Confidence            6655554

>TIGR02977 phageshock_pspA phage shock protein A

Probab=90.08  E-value=24  Score=35.99  Aligned_cols=50  Identities=22%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779          527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  576 (796)
Q Consensus       527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s  576 (796)
                      ....+.+..|..++..+...+.+|+...-++++.++.++.....+..++.
T Consensus        95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~  144 (219)
T TIGR02977        95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ  144 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555555444444443

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=90.04  E-value=29  Score=37.76  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=12.6

Q ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 003779          429 NQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ  460 (796)
Q Consensus       429 ~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq  460 (796)
                      ..++.++.....++.  .+-+.+|..+....+
T Consensus       199 ~~~~i~~~~~~~~~~--~~~l~~l~~~l~~~~  228 (444)
T TIGR03017       199 QEKGIVSSDERLDVE--RARLNELSAQLVAAQ  228 (444)
T ss_pred             HHcCCcccCcccchH--HHHHHHHHHHHHHHH
Confidence            345555554433332  133444544444433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=89.81  E-value=27  Score=44.05  Aligned_cols=44  Identities=7%  Similarity=0.041  Sum_probs=27.9

Q ss_pred             hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          561 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       561 lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      ++.+..|..+.........+.|+-+...++.+|.+.+.||..+-
T Consensus       189 ~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in  232 (1109)
T PRK10929        189 VDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN  232 (1109)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555666666666777777777777777766666554

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=89.78  E-value=35  Score=39.49  Aligned_cols=122  Identities=14%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------HHHHHhHhhh
Q 003779          487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK----------ALRLRSNELK  556 (796)
Q Consensus       487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk----------~lqLRS~eLK  556 (796)
                      -...+.++.+.++.|...+.....+-..+...++....-.+++.++++.|..|+..|...          ...+...-=.
T Consensus       276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~  355 (560)
T PF06160_consen  276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE  355 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            334455555556555555555555556666666666666667777777777666655321          1111111112


Q ss_pred             hHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          557 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       557 leKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                      +++..+.+...+..-..-|+.|..+=..+...++.+.++-+.+...|..+..
T Consensus       356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~  407 (560)
T PF06160_consen  356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK  407 (560)
T ss_pred             HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333333333333334444545444444555555555555555555544433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=89.76  E-value=21  Score=34.94  Aligned_cols=124  Identities=17%  Similarity=0.192  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 003779          448 HIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  526 (796)
Q Consensus       448 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~  526 (796)
                      -|+++--+-..|+..+.+.+.-..+.-+=.+.|. -+|=+..-...+|...+|.       --.+|..++.=+.+..+-+
T Consensus         7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeE-------Rn~eL~~Lk~~~~~~v~~L   79 (177)
T PF13870_consen    7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEE-------RNKELLKLKKKIGKTVQIL   79 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555544444333333333 3444444444444444433       3344555555566666666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779          527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  578 (796)
Q Consensus       527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  578 (796)
                      ++-.|....+..|...+..++....-..-+++.++..++.+++.++++...+
T Consensus        80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l  131 (177)
T PF13870_consen   80 THVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL  131 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777767666666666666666666666666666666666666655543

>PRK11281 hypothetical protein; Provisional

Probab=89.63  E-value=69  Score=40.64  Aligned_cols=35  Identities=17%  Similarity=0.333  Sum_probs=22.5

Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          570 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       570 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      +.........+.|+-+...++.+|.+.+.||..+-
T Consensus       217 ~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in  251 (1113)
T PRK11281        217 GNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN  251 (1113)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445556666677777777777777777665

>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS

Probab=89.55  E-value=2.2  Score=37.81  Aligned_cols=66  Identities=17%  Similarity=0.318  Sum_probs=47.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003779          481 TDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEK  546 (796)
Q Consensus       481 t~~yNqQ~~~v~qLk~~mE~-Lq~Ei~aQ~~~le~l-~aErDaAq~E~naA~ERaK~LAaEVV~LEEk  546 (796)
                      .+..++--...+.+++++++ ++..++..+..+.-+ +.|||+.+..+..++++...|.+.|..||++
T Consensus        12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~   79 (79)
T PF04380_consen   12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ   79 (79)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34444444444556666654 344555555555555 9999999999999999999999999999864

BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=89.50  E-value=21  Score=42.59  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=66.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779          522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  601 (796)
Q Consensus       522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  601 (796)
                      ....|....++.+.|+.++..|+.++..++-...++.++++....+..-.   ...+...+..+.... +=+++.+.|+.
T Consensus       232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N  307 (670)
T KOG0239|consen  232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHN  307 (670)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            33445556666889999999999999999999999999888877665444   555556677777666 66788888888


Q ss_pred             HHHhhccCCCc
Q 003779          602 KLRKASGSGKS  612 (796)
Q Consensus       602 KLR~asa~gKa  612 (796)
                      .+..+-++-++
T Consensus       308 ~i~eLkGnIRV  318 (670)
T KOG0239|consen  308 EILELKGNIRV  318 (670)
T ss_pred             HHHHhhcCceE
Confidence            88888888776

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=89.48  E-value=37  Score=42.68  Aligned_cols=23  Identities=17%  Similarity=0.462  Sum_probs=13.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Q 003779          581 ERQDFQSTIEALQEEKKMMQSKL  603 (796)
Q Consensus       581 ER~~l~stIdaLQEEKklLqSKL  603 (796)
                      |=+.++..+++|+-+|+.|.-+.
T Consensus       579 elkk~idaL~alrrhke~LE~e~  601 (1195)
T KOG4643|consen  579 ELKKYIDALNALRRHKEKLEEEI  601 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666666666654

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=89.47  E-value=5.3  Score=35.32  Aligned_cols=55  Identities=20%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779          522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  576 (796)
Q Consensus       522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s  576 (796)
                      .....+.|.+....|+.|+..|.++-..|....-.++.+.+.++.|+......+.
T Consensus         9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~   63 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344567788888888888888888877765555555555556655555544444

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=89.39  E-value=65  Score=40.03  Aligned_cols=167  Identities=14%  Similarity=0.201  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------------HHHHHHHHHH
Q 003779          439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------------NQLKSEMEKL  501 (796)
Q Consensus       439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v-----------------~qLk~~mE~L  501 (796)
                      ...+..+.+.+..+..+.-.+...+.+.+...+.+......+.+.+-+....+                 .++..++..+
T Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~  615 (1047)
T PRK10246        536 EKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLL  615 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH----------------------------HHHHHH---HHHHHHHHHHHH
Q 003779          502 QEEIKVQLVELESFRNEYANVRLECNAADER----------------------------AKILAS---EVIGLEEKALRL  550 (796)
Q Consensus       502 q~Ei~aQ~~~le~l~aErDaAq~E~naA~ER----------------------------aK~LAa---EVV~LEEk~lqL  550 (796)
                      ++ +......++.+..+.......+..+..+                            ...+..   +...+++++..+
T Consensus       616 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1047)
T PRK10246        616 SQ-RHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQNRIQQL  694 (1047)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779          551 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       551 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  606 (796)
                      +...-.+.+..+.++.........+..+......+...+..+.+....++.++..+
T Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  750 (1047)
T PRK10246        695 TPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKA  750 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=89.38  E-value=44  Score=39.38  Aligned_cols=10  Identities=30%  Similarity=0.292  Sum_probs=4.7

Q ss_pred             cccccCCCCC
Q 003779          334 FLDSLNVPRA  343 (796)
Q Consensus       334 FLDSlnV~Ra  343 (796)
                      |...|.|.|.
T Consensus       142 l~~~L~V~~~  151 (754)
T TIGR01005       142 MREKLNVFGV  151 (754)
T ss_pred             HHhcceEEec
Confidence            4444555444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=89.35  E-value=72  Score=40.43  Aligned_cols=105  Identities=19%  Similarity=0.272  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 003779          495 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  574 (796)
Q Consensus       495 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q  574 (796)
                      .+++.++..+|..+.-..+....|...-+.+...+......+-.++-..|+++.. |-.-++..-+....+..+....+.
T Consensus       233 ~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~  311 (1141)
T KOG0018|consen  233 NDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKD  311 (1141)
T ss_pred             hHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhh
Confidence            3344444444444443333333333333333334444444455555566666665 555555555555555666666666


Q ss_pred             HHhHHHhhhhHHHHHHHHHHHHHHHH
Q 003779          575 ISSLEKERQDFQSTIEALQEEKKMMQ  600 (796)
Q Consensus       575 ~ssi~kER~~l~stIdaLQEEKklLq  600 (796)
                      +..++++-+...++|++|+.+++.+.
T Consensus       312 i~~~kk~~~~~~~~ie~~ek~l~av~  337 (1141)
T KOG0018|consen  312 IETAKKDYRALKETIERLEKELKAVE  337 (1141)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            66666666666677777776665443

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=89.30  E-value=23  Score=36.88  Aligned_cols=61  Identities=13%  Similarity=0.227  Sum_probs=40.8

Q ss_pred             HHHHHHHHhhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH
Q 003779          468 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA  528 (796)
Q Consensus       468 ~l~EsLa~ENsa-Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~na  528 (796)
                      .+++.|.+++.. |..=...+...+..++..|+.++..++....++...+..|..+-.+...
T Consensus        78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~  139 (233)
T cd07649          78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEG  139 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666633 3333344566778888888888888888888888887777665444444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF13166 AAA_13: AAA domain

Probab=89.18  E-value=49  Score=38.30  Aligned_cols=42  Identities=26%  Similarity=0.467  Sum_probs=19.1

Q ss_pred             HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779          558 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       558 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  599 (796)
                      ++++..+..++....+++..++..-......++.+-++++.+
T Consensus       430 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~  471 (712)
T PF13166_consen  430 EKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL  471 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            333444444444444444444443333444445555555554

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=89.11  E-value=40  Score=37.23  Aligned_cols=150  Identities=20%  Similarity=0.358  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          443 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE  511 (796)
Q Consensus       443 aaLqqhIeDLT~EKfaLqR~L~~s~~-----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~  511 (796)
                      ||++.|=+-.|.+ --|.++++++++           =+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus       102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~  180 (305)
T PF14915_consen  102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA  180 (305)
T ss_pred             HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444544444443 345666666665           3446778888888888888888889999888888888888888


Q ss_pred             hhhhHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 003779          512 LESFRNEYANVRLECNAA-------DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  584 (796)
Q Consensus       512 le~l~aErDaAq~E~naA-------~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~  584 (796)
                      |+.+..+..-++...-+.       .+....--.--..+|+++-++-|.-+=++.+|+.+..+.+.-++-+.-|   -++
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini---Q~~  257 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI---QDQ  257 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence            888776666655444332       2233333345577899999999999999999999998877766666655   566


Q ss_pred             HHHHHHHHHHHH
Q 003779          585 FQSTIEALQEEK  596 (796)
Q Consensus       585 l~stIdaLQEEK  596 (796)
                      ++.+|..||-|.
T Consensus       258 f~d~~~~L~ae~  269 (305)
T PF14915_consen  258 FQDIVKKLQAES  269 (305)
T ss_pred             HHHHHHHHHHHH
Confidence            778888888443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=89.08  E-value=4.9  Score=39.01  Aligned_cols=64  Identities=31%  Similarity=0.386  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC--NAADERAKILASEVIGLEEKALRLRSN  553 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~--naA~ERaK~LAaEVV~LEEk~lqLRS~  553 (796)
                      .+.++..++.+|++++......+..+.+|+.+.....  .++......|..|+..|++++..||+.
T Consensus        73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~  138 (169)
T PF07106_consen   73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG  138 (169)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4555566666666666666666666666666655554  566777778888888888888888763

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.74  E-value=11  Score=45.22  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=42.8

Q ss_pred             ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779          428 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  504 (796)
Q Consensus       428 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  504 (796)
                      +.|++-|-..+.-=..+++.|+.-|..+|-.-+..|+..++--+.|.+.-+.|.+||-+-...-+.|...++++-+.
T Consensus       546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~  622 (717)
T PF10168_consen  546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL  622 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444344444444556666666666666666666666666666666555666666655555544554444444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10698 phage shock protein PspA; Provisional

Probab=88.68  E-value=32  Score=35.58  Aligned_cols=121  Identities=14%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779          441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  520 (796)
Q Consensus       441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  520 (796)
                      -..+|.|.|.||-..--.+.+++++..+.-..+..       +|.+....       ++.++..  |. ++|..=..+.+
T Consensus        25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er-------~~~~~~~~-------~~~~e~k--A~-~Al~~G~EdLA   87 (222)
T PRK10698         25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTR-------RIEQAEAQ-------QVEWQEK--AE-LALRKEKEDLA   87 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------HHHHHHH--HH-HHHHCCCHHHH
Confidence            45799999999999888887777765544433322       22222222       2222221  00 11111111111


Q ss_pred             -HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779          521 -NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  578 (796)
Q Consensus       521 -aAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  578 (796)
                       .|..+-..+.+++..|..+....+..+.+|+....+++..++.++..++.+..++..+
T Consensus        88 r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A  146 (222)
T PRK10698         88 RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA  146 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1233344456666777777777777777777777777777777777777666666655

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=88.68  E-value=29  Score=37.71  Aligned_cols=161  Identities=18%  Similarity=0.237  Sum_probs=123.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779          438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  517 (796)
Q Consensus       438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  517 (796)
                      ..+.+++|.+-..|+-.+...++|.+...+.-++.|..|...+....|    .....++.+|.|=+|++.|-   ..++.
T Consensus        20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~----k~~~~k~KLE~LCRELQk~N---k~lke   92 (309)
T PF09728_consen   20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS----KAILAKSKLESLCRELQKQN---KKLKE   92 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            367899999999999999999999999999999999999999988887    44567777888877777665   33444


Q ss_pred             HHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          518 EYANVRLECNAAD-ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       518 ErDaAq~E~naA~-ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      |.-....+....+ +=...++.-+-....++-+-.....|+..+-+.++....++..+|..-   =.++.+.+....-|.
T Consensus        93 E~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~r---E~~~~~~~k~keLE~  169 (309)
T PF09728_consen   93 ESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELR---EEHFEKLLKQKELEV  169 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHH
Confidence            4444333333222 223456666777777777777788888888889999999999999843   246778888888999


Q ss_pred             HHHHHHHHhhcc
Q 003779          597 KMMQSKLRKASG  608 (796)
Q Consensus       597 klLqSKLR~asa  608 (796)
                      +++..||-++..
T Consensus       170 Ql~~AKl~q~~~  181 (309)
T PF09728_consen  170 QLAEAKLEQQQE  181 (309)
T ss_pred             HHHHHHHHHHHH
Confidence            999999986544

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.61  E-value=78  Score=39.97  Aligned_cols=168  Identities=23%  Similarity=0.343  Sum_probs=97.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHhhhHHHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRS-----------------------------------LEASRALSESLAAENSSLTDSY  484 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~-----------------------------------L~~s~~l~EsLa~ENsaLt~~y  484 (796)
                      .+..-|+--+.-|-.||-.+++.                                   |+.-..-.+.--.|-+++--+|
T Consensus       272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky  351 (1200)
T KOG0964|consen  272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY  351 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            46677777777777777666554                                   1111222333345666777788


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHH---HHHHHhhh----------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          485 NQQRSVVNQLKSEMEKLQEEIK---VQLVELES----------FRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  551 (796)
Q Consensus       485 NqQ~~~v~qLk~~mE~Lq~Ei~---aQ~~~le~----------l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR  551 (796)
                      |.+...-+.++..+..|++...   +-...-.+          ++.|+.......+.-.++-..|+.|...|+.+.... 
T Consensus       352 ~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~-  430 (1200)
T KOG0964|consen  352 NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEK-  430 (1200)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Confidence            8888888888888877776322   11111122          255555566667777777778888877777655432 


Q ss_pred             hHhh-hhHHHhh-------hhHHHHHHHHHHHHhHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          552 SNEL-KLERQLE-------NSQSEISSYKKKISSLEKER-------QDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       552 S~eL-KleKElE-------~l~~Er~S~~~q~ssi~kER-------~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                      -.++ +++..+.       .+..+.-+..+++..+...|       ..+++.|+++.+.+...+..|+.+..
T Consensus       431 ~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~  502 (1200)
T KOG0964|consen  431 LEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN  502 (1200)
T ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2222 2222222       23223333333333333333       34677888888888889999986554

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=88.58  E-value=41  Score=36.67  Aligned_cols=35  Identities=11%  Similarity=0.217  Sum_probs=24.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003779          487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  521 (796)
Q Consensus       487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa  521 (796)
                      ......-|.++++++++++.....++..|+.+..-
T Consensus       169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i  203 (444)
T TIGR03017       169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI  203 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33456667777777777777777777887776543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=88.52  E-value=41  Score=36.56  Aligned_cols=55  Identities=15%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHH
Q 003779          684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL  738 (796)
Q Consensus       684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELl  738 (796)
                      ..|+...-=|-.|+-|...+-+.--..-..+-+|-..+..+..+++.++..++-+
T Consensus       244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kL  298 (309)
T PF09728_consen  244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKL  298 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666667777666666666666666777777777777766665555444

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=88.41  E-value=15  Score=43.19  Aligned_cols=112  Identities=21%  Similarity=0.315  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  534 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK  534 (796)
                      -|-+.|.++++..+.|.+|-+.+...|==-..   .+-+.+.+++.|...+..=....+.=.-=|-.+|-.+..-.....
T Consensus       313 ~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~  392 (570)
T COG4477         313 ILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALT  392 (570)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            45677888888888888888888888843222   233344444433333222222222222334455555666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779          535 ILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  569 (796)
Q Consensus       535 ~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~  569 (796)
                      ....+-+.+.+.++.||-.+++++-.+++++..+.
T Consensus       393 ~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~  427 (570)
T COG4477         393 DIEDEQEKVQEHLTSLRKDELEARENLERLKSKLH  427 (570)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777888888888888877766666654433

>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1)

Probab=88.31  E-value=39  Score=36.08  Aligned_cols=96  Identities=16%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhh
Q 003779          492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-------ILASEVIGLEEKALRLRSNELKLERQLENS  564 (796)
Q Consensus       492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK-------~LAaEVV~LEEk~lqLRS~eLKleKElE~l  564 (796)
                      .++...++++|.-.....-.++.-+..|..+-.+...|..|..       ....|+.-+..++.+.+-+--+++.+-+..
T Consensus       115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~  194 (258)
T cd07680         115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKV  194 (258)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788888888888888888888888888877778876633       234667777777666655555555554444


Q ss_pred             HHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          565 QSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       565 ~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      ..+++.+...|.      ..+....|.+|
T Consensus       195 l~~ln~~~~~y~------~~m~~vfd~~Q  217 (258)
T cd07680         195 LDDVGKTTPQYM------ENMEQVFEQCQ  217 (258)
T ss_pred             HHHHHHhhHHHH------HHHHHHHHHHH
Confidence            444444444444      24667888888

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=88.26  E-value=44  Score=36.61  Aligned_cols=18  Identities=17%  Similarity=0.418  Sum_probs=10.4

Q ss_pred             hhhhHHHHHHHHHHHHHH
Q 003779          581 ERQDFQSTIEALQEEKKM  598 (796)
Q Consensus       581 ER~~l~stIdaLQEEKkl  598 (796)
                      ||+.+.-.+.+|.+|-+-
T Consensus       158 Eke~llesvqRLkdEard  175 (333)
T KOG1853|consen  158 EKEVLLESVQRLKDEARD  175 (333)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455555666666666433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=88.22  E-value=23  Score=41.04  Aligned_cols=73  Identities=21%  Similarity=0.132  Sum_probs=31.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 003779          481 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL  555 (796)
Q Consensus       481 t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL  555 (796)
                      +.+|++  ++++..+...+.+-.|...-..++..+.++..++-..+..-+.+.++++.|...++|.-.-|+.++.
T Consensus       341 ~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~  413 (493)
T KOG0804|consen  341 MSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD  413 (493)
T ss_pred             HHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            334444  3333333333333333333233334444444444444445555555555555544444444444433

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=88.02  E-value=18  Score=38.33  Aligned_cols=18  Identities=22%  Similarity=0.342  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 003779          589 IEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       589 IdaLQEEKklLqSKLR~a  606 (796)
                      ++.++.+.+.++..|.++
T Consensus       185 ~~~~~a~~~~~~a~l~~a  202 (346)
T PRK10476        185 VDALVAQRAAREAALAIA  202 (346)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            344555666666666654

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=87.97  E-value=68  Score=38.47  Aligned_cols=214  Identities=22%  Similarity=0.245  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003779          466 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAADERAKILASEVIG  542 (796)
Q Consensus       466 s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l---~aErDaAq~E~naA~ERaK~LAaEVV~  542 (796)
                      =+++-++|-.=|.+|++-=|+|.. |..|++.+.++.+.+.-..-....+   ..+...+-.+. .-.++...++..+..
T Consensus       123 ~~~lk~~lee~~~el~~~k~qq~~-v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~-~L~~~~~~~~~q~~~  200 (629)
T KOG0963|consen  123 NEELKEELEEVNNELADLKTQQVT-VRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREA-GLKDEEQNLQEQLEE  200 (629)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            456777788888888877777654 4556666666655444333322222   12222221111 123455667888888


Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHH----HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCC
Q 003779          543 LEEKALRLRSNELKLERQLENSQSE----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKT  618 (796)
Q Consensus       543 LEEk~lqLRS~eLKleKElE~l~~E----r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~  618 (796)
                      ||+++..+-+..+...+++..++.-    ...--.+|.+||.|=...+.-|..||+|...|...|..+..+-+.      
T Consensus       201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~------  274 (629)
T KOG0963|consen  201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL------  274 (629)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------
Confidence            9999988877777788887765544    777788999999999999999999999999998888854432222      


Q ss_pred             cccccccccccccccccccccccCCccccccCCCccccccCCCCCCcCcccccccccccchhhHHHHHhhHHHHHHHHHH
Q 003779          619 AASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELAL  698 (796)
Q Consensus       619 ~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~~~Ip~DQlR~IdSInaLisELa~  698 (796)
                           +   ..+|+    +..   . .+++.                         -+++.   .++-..|+.+=..+..
T Consensus       275 -----~---~~~~i----~~~---~-~~L~~-------------------------kd~~i---~~L~~di~~~~~S~~~  310 (629)
T KOG0963|consen  275 -----A---KIDDI----DAL---G-SVLNQ-------------------------KDSEI---AQLSNDIERLEASLVE  310 (629)
T ss_pred             -----c---cCCch----HHH---H-HHHhH-------------------------HHHHH---HHHHHHHHHHHHHHHH
Confidence                 0   11222    000   0 00000                         01122   1344455555566666


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 003779          699 EKEELVQALSSELAQSSKLKDLNNELSRKLEHQ  731 (796)
Q Consensus       699 EReravsaLa~esr~~~dLk~lN~ELsRKLE~q  731 (796)
                      |++.....+..-.+.+......-++|.++|+.+
T Consensus       311 e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~  343 (629)
T KOG0963|consen  311 EREKHKAQISALEKELKAKISELEELKEKLNSR  343 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            777777777777777776666666776666543

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=87.94  E-value=19  Score=34.46  Aligned_cols=88  Identities=18%  Similarity=0.266  Sum_probs=60.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 003779          437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF  515 (796)
Q Consensus       437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-~~~le~l  515 (796)
                      ..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.....|.++...|+--..   +. .+...-.
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~---ak~~l~~r~~   89 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ---AKLELESRLL   89 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4566789999999998887777766666667778888888888888888887777777777654211   11 2222234


Q ss_pred             HHHHHHHHHhhh
Q 003779          516 RNEYANVRLECN  527 (796)
Q Consensus       516 ~aErDaAq~E~n  527 (796)
                      ++|-|.|..|+-
T Consensus        90 k~~~dka~lel~  101 (107)
T PF09304_consen   90 KAQKDKAILELK  101 (107)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHH
Confidence            666666666553

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=87.85  E-value=32  Score=37.64  Aligned_cols=70  Identities=20%  Similarity=0.317  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQS  566 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~  566 (796)
                      -+..|+..|..+++-++--++.+++|-.|..+..-       +...|--.+..||+.+.+++-.-.+.-++++.+++
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~y-------qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~  147 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMY-------QVDLLKDKLEELEETLAQLQREYREKIRELERQKR  147 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888888888888888888888776433       44556666667777766665544444444444443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=87.84  E-value=44  Score=42.72  Aligned_cols=48  Identities=23%  Similarity=0.347  Sum_probs=27.5

Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHH
Q 003779          681 DQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRL  735 (796)
Q Consensus       681 DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRL  735 (796)
                      +-++.++-|.+    |+.+.++--++|-   +...+|..||+++.+-|....+|.
T Consensus      1704 ~a~~kl~~l~d----Le~~y~~~~~~L~---~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1704 QANEKLDRLKD----LELEYLRNEQALE---DKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred             HHHHHHHHHHH----HHHHHhhhhHHHH---HHHHHhhhHHHHHHHHHHHHhhhh
Confidence            33455555444    4544444444443   344567777888888777776653

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=87.81  E-value=24  Score=38.57  Aligned_cols=21  Identities=10%  Similarity=0.216  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 003779          587 STIEALQEEKKMMQSKLRKAS  607 (796)
Q Consensus       587 stIdaLQEEKklLqSKLR~as  607 (796)
                      ..+..++.+.+.++..|.++.
T Consensus       227 ~~~~~~~~~l~~~~~~l~~~~  247 (421)
T TIGR03794       227 KELETVEARIKEARYEIEELE  247 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666433

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=87.61  E-value=22  Score=38.36  Aligned_cols=74  Identities=26%  Similarity=0.402  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH----HHHh
Q 003779          532 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS----KLRK  605 (796)
Q Consensus       532 RaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS----KLR~  605 (796)
                      ..+.+..++..++..+..+.++|-.++-.+++-+.|.++..+.+.++++-|=-...+.++|.+|++.+..    |.||
T Consensus       170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN  247 (267)
T PF10234_consen  170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN  247 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677888888888888888888888889999999999999999999999999999999999988764    5555

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=87.55  E-value=25  Score=33.40  Aligned_cols=82  Identities=21%  Similarity=0.220  Sum_probs=35.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA  547 (796)
Q Consensus       468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~  547 (796)
                      ...+.|-.+|..|.+.+=.....+.+++.++..+..+++.-.........+++.+...++-.. =...|...+..+|+++
T Consensus        34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeS  112 (150)
T PF07200_consen   34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEES  112 (150)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHH
Confidence            333444444444444433333333333333333333322222233333334444433333222 2345777888888888


Q ss_pred             HHH
Q 003779          548 LRL  550 (796)
Q Consensus       548 lqL  550 (796)
                      -.+
T Consensus       113 e~l  115 (150)
T PF07200_consen  113 EEL  115 (150)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            766

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=87.37  E-value=79  Score=38.55  Aligned_cols=65  Identities=28%  Similarity=0.330  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          540 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       540 VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      |.-|+.+|..||.+-=--.|-++.+..+-..+.+++.+-.+-=..+.--|++||+|.+-++.+..
T Consensus       589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e  653 (786)
T PF05483_consen  589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE  653 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            33455566666554333355566677777777777776666666677778888888877766544

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=87.22  E-value=41  Score=35.14  Aligned_cols=22  Identities=14%  Similarity=0.074  Sum_probs=13.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 003779          584 DFQSTIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       584 ~l~stIdaLQEEKklLqSKLR~  605 (796)
                      .....+..++...+.++..|.+
T Consensus       183 ~~~~~~~~~~~~l~~a~~~l~~  204 (327)
T TIGR02971       183 LAQAEVKSALEAVQQAEALLEL  204 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            3445566666666666666663

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=87.13  E-value=37  Score=34.49  Aligned_cols=14  Identities=14%  Similarity=0.375  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHH
Q 003779          452 LTQEKFALQRSLEA  465 (796)
Q Consensus       452 LT~EKfaLqR~L~~  465 (796)
                      +=.|+-.+.+.-++
T Consensus        27 f~keRa~iE~eYak   40 (251)
T cd07653          27 FVKERAAIEQEYAK   40 (251)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33455555444433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.05  E-value=18  Score=37.37  Aligned_cols=67  Identities=24%  Similarity=0.340  Sum_probs=45.0

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH
Q 003779          522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST  588 (796)
Q Consensus       522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~st  588 (796)
                      +|...++-.++.+.|..|+..|+.++..|+...=++++.+.....++.+..+++..++.-|.+|.-.
T Consensus        40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~  106 (251)
T PF11932_consen   40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL  106 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555556666666666666666666666666667777777777777777777777777766553

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.96  E-value=6.3  Score=35.61  Aligned_cols=64  Identities=22%  Similarity=0.310  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779          543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  606 (796)
                      ||+|+.+.--.---++-+++.|+++-.++..+++.+..-|..|..+.+.|++|-..-|.|||.+
T Consensus         9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074           9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444332222234445555555555566666666667777788888888888888888844

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=86.83  E-value=40  Score=35.12  Aligned_cols=15  Identities=20%  Similarity=0.275  Sum_probs=6.4

Q ss_pred             hhHHHHHHHHHHHHH
Q 003779          440 EDFAALEQHIEDLTQ  454 (796)
Q Consensus       440 ~~faaLqqhIeDLT~  454 (796)
                      .++..++..++.+..
T Consensus        80 ~~l~~a~a~l~~~~~   94 (334)
T TIGR00998        80 LALAKAEANLAALVR   94 (334)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444444433

>TIGR00634 recN DNA repair protein RecN

Probab=86.77  E-value=66  Score=37.05  Aligned_cols=60  Identities=20%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          541 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       541 V~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      ..+++++..++.-.-|-..+++.+...+..+++++..+...    ...++.|+++++.++.++.
T Consensus       304 ~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~----~~~le~L~~el~~l~~~l~  363 (563)
T TIGR00634       304 NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS----DESLEALEEEVDKLEEELD  363 (563)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHH
Confidence            34555555554433333345555555555666655544321    1234444555544444444

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=86.69  E-value=85  Score=38.20  Aligned_cols=113  Identities=19%  Similarity=0.208  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh---
Q 003779          453 TQEKFALQRSL-EASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE---  525 (796)
Q Consensus       453 T~EKfaLqR~L-~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E---  525 (796)
                      -++++.++|+- -.++...+..-..|..+++-|=-|..   +-..+++++|+.+++.++-...-..+..|-....++   
T Consensus        79 kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~  158 (716)
T KOG4593|consen   79 KRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGT  158 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555543 34566667777788888876554443   334567778888877777777766666665555544   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 003779          526 -CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ  565 (796)
Q Consensus       526 -~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~  565 (796)
                       .+++++++-.+++||-..+.++.++-+.--+.+|++...+
T Consensus       159 lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~  199 (716)
T KOG4593|consen  159 LRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQH  199 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4688899999999999999999988777767666665533

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=86.65  E-value=9.6  Score=40.04  Aligned_cols=22  Identities=23%  Similarity=0.219  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHH
Q 003779          516 RNEYANVRLECNAADERAKILA  537 (796)
Q Consensus       516 ~aErDaAq~E~naA~ERaK~LA  537 (796)
                      +.||+.++.++..|..+.+...
T Consensus       144 ~~~~~~~~~~~~~a~~~~~~a~  165 (331)
T PRK03598        144 ANDLENARSSRDQAQATLKSAQ  165 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666555555444443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.58  E-value=19  Score=37.80  Aligned_cols=63  Identities=22%  Similarity=0.286  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003779          533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK  602 (796)
Q Consensus       533 aK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK  602 (796)
                      .+.+..|+..|..+=+    ..   ..+|..++.+|..++.-+..+..||...+..|.++++|..-|...
T Consensus        34 L~e~~kE~~~L~~Er~----~h---~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~   96 (230)
T PF10146_consen   34 LEEYRKEMEELLQERM----AH---VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDE   96 (230)
T ss_pred             HHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555544433    22   234556777888888888888888888888888888887666543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=86.56  E-value=41  Score=40.68  Aligned_cols=48  Identities=23%  Similarity=0.307  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779          457 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  504 (796)
Q Consensus       457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  504 (796)
                      |.|++...++....-.|-.|-+.|...-=+-+..+..+.-.+-+|+.+
T Consensus       485 fklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq  532 (698)
T KOG0978|consen  485 FKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ  532 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667776666666666666665555555444444444444444444444

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=86.50  E-value=42  Score=34.48  Aligned_cols=67  Identities=19%  Similarity=0.217  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      .-+..|--.|.+|+..|+.++..++-..+-.-.--+=++..++-+..++..+..+.+.|+..|+...
T Consensus       146 ~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R  212 (240)
T PF12795_consen  146 PLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR  212 (240)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566667777777777777665444433332233455566667777777777777777776654

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.96  E-value=74  Score=36.81  Aligned_cols=98  Identities=22%  Similarity=0.284  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh----hhhHHHH
Q 003779          514 SFRNEYANVRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE----RQDFQST  588 (796)
Q Consensus       514 ~l~aErDaAq~E~na-A~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE----R~~l~st  588 (796)
                      .+.+||+..+..... -..+...|.--|+.|++...-|+++=+-.=-.|.++.+|.+-+-.+-+++|.+    +--++..
T Consensus       198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek  277 (446)
T KOG4438|consen  198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK  277 (446)
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            446777777665544 67788888889999999999999999888888888888888877777777665    4557778


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCC
Q 003779          589 IEALQEEKKMMQSKLRKASGSGK  611 (796)
Q Consensus       589 IdaLQEEKklLqSKLR~asa~gK  611 (796)
                      |+.||.=.+.++.-++.+...+-
T Consensus       278 v~~~qti~~e~~~~lk~i~~~~~  300 (446)
T KOG4438|consen  278 VTNLQTIEKELKALLKKISSDGV  300 (446)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhh
Confidence            88888777777777777776663

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=85.92  E-value=4.6  Score=47.65  Aligned_cols=80  Identities=16%  Similarity=0.297  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 003779          455 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  534 (796)
Q Consensus       455 EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK  534 (796)
                      +-|+..|.+..+.++-+++.-|--.|--+--+..+.++++.-++|.|+++|-....+|++++.|...||....++++++.
T Consensus        73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~  152 (907)
T KOG2264|consen   73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN  152 (907)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence            44556666666667767776666666666666667788888888888888888889999999999999999999888864

>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

Probab=85.88  E-value=44  Score=34.18  Aligned_cols=149  Identities=11%  Similarity=0.156  Sum_probs=93.1

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779          436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  515 (796)
Q Consensus       436 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  515 (796)
                      +..+.+|..+...|+.|..-=-.+.|..+|-.+=...|+.+...+-..||..+..=..|.+-+++.=+-+......++.+
T Consensus        10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~   89 (201)
T cd07622          10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG   89 (201)
T ss_pred             CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567898888888888765444555555544444556677778888888777666666666555554444444333332


Q ss_pred             ----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhH
Q 003779          516 ----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF  585 (796)
Q Consensus       516 ----------~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l  585 (796)
                                --||...-..+..+..+-...+.+.+.+++.+.+.+..   ++.+++..+.+.+.+..++          
T Consensus        90 ~~~~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~----------  156 (201)
T cd07622          90 LEDEELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKA----------  156 (201)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------
Confidence                      23455555555555556666777888888877777544   5666666666555555444          


Q ss_pred             HHHHHHHHHHHH
Q 003779          586 QSTIEALQEEKK  597 (796)
Q Consensus       586 ~stIdaLQEEKk  597 (796)
                      ..++++-|++|.
T Consensus       157 ~~E~~rF~~~K~  168 (201)
T cd07622         157 LEDVERFKKQKV  168 (201)
T ss_pred             HHHHHHHHHHHH
Confidence            467777777763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=85.81  E-value=73  Score=36.59  Aligned_cols=89  Identities=25%  Similarity=0.284  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH-------hHHHHHHHHHhhh----hccc-------c
Q 003779          689 INALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQT-------QRLELLTAQNMAN----ENIS-------F  750 (796)
Q Consensus       689 InaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qt-------QRLELltsq~ma~----e~~~-------a  750 (796)
                      ++.=+.+-+.|+..++.+|+..-+.    .. ..|+..+|-.+|       ..||.+++.+-+-    |.+.       +
T Consensus       360 ~~~k~~~ke~E~q~lr~~l~~~~~~----s~-~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~  434 (511)
T PF09787_consen  360 LQLKLKEKESEIQKLRNQLSARASS----SS-WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEAS  434 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc----CC-cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhcc
Confidence            3344445566667777776664411    11 346677776666       4456666554432    1111       1


Q ss_pred             CCCCccccccccccCcccchHHHHHHHHHHhhcCCC
Q 003779          751 RQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGG  786 (796)
Q Consensus       751 ~~~d~~~~~~~~~~~degdevvervlgwimklfpgg  786 (796)
                      ....++   -...|.+.+|.+-.| +-+.|+..|+.
T Consensus       435 ~~~~~~---~~~~~~~~~~d~~~r-~~~~~~~~~~d  466 (511)
T PF09787_consen  435 NNRPSS---ILMKYSNSEDDAESR-VPLLMKDSPHD  466 (511)
T ss_pred             CCCCch---hhHhhccCCCchhhh-hhhhccCCCcc
Confidence            122222   233566667777777 67777777665

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=85.65  E-value=33  Score=36.62  Aligned_cols=120  Identities=12%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          472 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  551 (796)
Q Consensus       472 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR  551 (796)
                      +++.+-..+...|..++   ...-.+-..++.++..+...|+..+..|+.|-.+...|+.+.....++.-.-.+.+-++|
T Consensus        92 ~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k  168 (252)
T cd07675          92 RVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAK  168 (252)
T ss_pred             HHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHH
Confidence            33444444444444422   222255577788888888888888999998888888887774443322211111122222


Q ss_pred             hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh-----hhHHHHHHHHH--HHHH
Q 003779          552 SNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK  597 (796)
Q Consensus       552 S~eLKleKElE~l~~Er~S~~~q~ssi~kER-----~~l~stIdaLQ--EEKk  597 (796)
                      ..-=+-..++++.+   ..|..++.-+-+.-     ..|-..+|.||  +|++
T Consensus       169 ~~~~~~~q~~e~aK---n~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~R  218 (252)
T cd07675         169 QQLNLRTHMADESK---NEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERR  218 (252)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence            22222222233222   33444444443332     33777888898  4444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PRK10722 hypothetical protein; Provisional

Probab=85.64  E-value=2.1  Score=45.57  Aligned_cols=51  Identities=29%  Similarity=0.289  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 003779          691 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ  741 (796)
Q Consensus       691 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq  741 (796)
                      .|+-.|+.||.|--+-.-+...+++.|+.++++|.++|+.++.+||-+|.=
T Consensus       155 ~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI  205 (247)
T PRK10722        155 ALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDI  205 (247)
T ss_pred             HHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677788876655556666799999999999999999999999999863

>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins

Probab=85.48  E-value=50  Score=34.67  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHh-hHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779          468 ALSESLAAENSSLTDSYNQQ-RSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  535 (796)
Q Consensus       468 ~l~EsLa~ENsaLt~~yNqQ-~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~  535 (796)
                      .=++.+|.....+.+.|+-+ ...+           ....+...++++|+....-+|...+-.|+.+..++..|.+-.+.
T Consensus        77 ~qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~  156 (241)
T cd07656          77 VQTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKE  156 (241)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33566677777777777653 1222           23344555666777777777777777777777777777666665


Q ss_pred             HHHHH
Q 003779          536 LASEV  540 (796)
Q Consensus       536 LAaEV  540 (796)
                      .....
T Consensus       157 ae~~~  161 (241)
T cd07656         157 AEKQE  161 (241)
T ss_pred             HHHHH
Confidence            55443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=85.45  E-value=47  Score=34.09  Aligned_cols=89  Identities=13%  Similarity=0.191  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003779          463 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG  542 (796)
Q Consensus       463 L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~  542 (796)
                      |.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-+++...-.++-.+.++.-+.+....|+..
T Consensus        21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k  100 (194)
T PF15619_consen   21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK  100 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333445668889999988888888888888777777777777888888888888888888888888888888888888


Q ss_pred             HHHHHHHHH
Q 003779          543 LEEKALRLR  551 (796)
Q Consensus       543 LEEk~lqLR  551 (796)
                      +.+++..|.
T Consensus       101 ~~~~l~~L~  109 (194)
T PF15619_consen  101 TKDELKHLK  109 (194)
T ss_pred             HHHHHHHHH
Confidence            888887763

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=85.39  E-value=52  Score=34.60  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=14.1

Q ss_pred             hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779          563 NSQSEISSYKKKISSLEKERQDFQSTIEALQE  594 (796)
Q Consensus       563 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE  594 (796)
                      .+...+....++.+.....-+.+...++||++
T Consensus       222 ~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~  253 (301)
T PF14362_consen  222 RLDEARQAKVAEFQAIISANDGFLARLEALWE  253 (301)
T ss_pred             HHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence            33333344444444333444455555555543

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=85.36  E-value=51  Score=34.41  Aligned_cols=105  Identities=13%  Similarity=0.208  Sum_probs=66.5

Q ss_pred             HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779          474 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEE----IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR  549 (796)
Q Consensus       474 a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E----i~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lq  549 (796)
                      -...+.+...+.+.+.+|.++...+-++-.+    .......+..+..|+|.+..+++.....--.|-.-...+-+-+.-
T Consensus        29 ~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~  108 (207)
T PF05010_consen   29 KKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEG  108 (207)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3333344444444444555444444333222    222233455667777877777777766666777777777777778


Q ss_pred             HHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779          550 LRSNELKLERQLENSQSEISSYKKKISSL  578 (796)
Q Consensus       550 LRS~eLKleKElE~l~~Er~S~~~q~ssi  578 (796)
                      +|.++=++.+.++.+...+.....+|.++
T Consensus       109 ~k~NEE~Lkk~~~ey~~~l~~~eqry~aL  137 (207)
T PF05010_consen  109 YKKNEETLKKCIEEYEERLKKEEQRYQAL  137 (207)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888887777777777765

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=85.13  E-value=28  Score=35.34  Aligned_cols=55  Identities=25%  Similarity=0.329  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779          516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  573 (796)
Q Consensus       516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~  573 (796)
                      +.|-.+...-++.--.|.-.|=.||+.|--.+..+|+..   +++|..++.|.-++-+
T Consensus       126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r  180 (182)
T PF15035_consen  126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSR  180 (182)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence            333333333344444555566699999999999998865   6889999888766543

>TIGR02473 flagell_FliJ flagellar export protein FliJ

Probab=85.12  E-value=31  Score=31.70  Aligned_cols=47  Identities=17%  Similarity=0.214  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  504 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  504 (796)
                      .|++-|.-...-.+....+-......++.....+.+|...+..+.++
T Consensus         3 ~L~~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~   49 (141)
T TIGR02473         3 RLQKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQ   49 (141)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443334333333333444444455555555555444443

Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.

>PRK11519 tyrosine kinase; Provisional

Probab=85.07  E-value=36  Score=40.30  Aligned_cols=13  Identities=31%  Similarity=0.393  Sum_probs=7.8

Q ss_pred             HHhhHHHHHHHHH
Q 003779          685 MIHNINALISELA  697 (796)
Q Consensus       685 ~IdSInaLisELa  697 (796)
                      ..|.++.|.+.|.
T Consensus       506 ~~Ea~r~lrt~l~  518 (719)
T PRK11519        506 AIEAIRSLRTSLH  518 (719)
T ss_pred             HHHHHHHHHHHhh
Confidence            4566666666653

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=84.94  E-value=43  Score=33.18  Aligned_cols=13  Identities=38%  Similarity=0.521  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHH
Q 003779          587 STIEALQEEKKMM  599 (796)
Q Consensus       587 stIdaLQEEKklL  599 (796)
                      ..++.||.+++.|
T Consensus       126 ~~ve~L~~ql~~L  138 (140)
T PF10473_consen  126 SAVEMLQKQLKEL  138 (140)
T ss_pred             HHHHHHHHHHhhh
Confidence            4445555555444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=84.93  E-value=33  Score=35.77  Aligned_cols=40  Identities=20%  Similarity=0.330  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          565 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       565 ~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      ...-...+.+..+|..||...+.-|+.||.....||...-
T Consensus       146 a~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~  185 (192)
T PF11180_consen  146 AARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN  185 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344556677777777788888888888888888876543

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=84.85  E-value=36  Score=32.29  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 003779          459 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK  495 (796)
Q Consensus       459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk  495 (796)
                      |+-.+.......+.....-..+...-+.|...+...+
T Consensus         8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq   44 (132)
T PF07926_consen    8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ   44 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF13942 Lipoprotein_20: YfhG lipoprotein

Probab=84.75  E-value=3.2  Score=42.49  Aligned_cols=50  Identities=24%  Similarity=0.288  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779          691 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  740 (796)
Q Consensus       691 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  740 (796)
                      .|.-.|++||-|--+--.+.-.+++.|+.++..|..+|+.++..||-+|-
T Consensus       109 ~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD  158 (179)
T PF13942_consen  109 VLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTD  158 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            46678899999988888888899999999999999999999999999985

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.58  E-value=3.4  Score=40.14  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC
Q 003779          584 DFQSTIEALQEEKKMMQSKLRKASGS  609 (796)
Q Consensus       584 ~l~stIdaLQEEKklLqSKLR~asa~  609 (796)
                      ++...|+.|++|.+.++.||..+-.+
T Consensus       113 el~~~i~~l~~e~~~l~~kL~~l~~~  138 (169)
T PF07106_consen  113 ELREEIEELEEEIEELEEKLEKLRSG  138 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            46677777788888888887765553

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=84.50  E-value=58  Score=37.40  Aligned_cols=142  Identities=11%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHhhhHHHHHHHHHHHH
Q 003779          464 EASRALSESLAAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN--VRLECNAADERAKILASE  539 (796)
Q Consensus       464 ~~s~~l~EsLa~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa--Aq~E~naA~ERaK~LAaE  539 (796)
                      +-++++++.|-.+=+.+...-|++  ...|.-.+.++++-++.+..-+.+|..|+....-  -..+........-.|..|
T Consensus       215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~q  294 (434)
T PRK15178        215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQ  294 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHH
Confidence            467889999999999998888875  4678888888888888888888888888765532  123334455666677778


Q ss_pred             HHHHHHHHHHHHhHhh-------hhHHHhhhhHHHHHHHHHHHHhHH--HhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779          540 VIGLEEKALRLRSNEL-------KLERQLENSQSEISSYKKKISSLE--KERQDFQSTIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       540 VV~LEEk~lqLRS~eL-------KleKElE~l~~Er~S~~~q~ssi~--kER~~l~stIdaLQEEKklLqSKLR~  605 (796)
                      .+.++-++..|++.--       -++.+++.|..++...+.++..-.  .--.....+.++|.-|.+.++..+.-
T Consensus       295 La~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~s  369 (434)
T PRK15178        295 LAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWES  369 (434)
T ss_pred             HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777777766422       223333344444444444432100  00122445558888888888877764

>PF15294 Leu_zip: Leucine zipper

Probab=84.37  E-value=47  Score=36.23  Aligned_cols=149  Identities=15%  Similarity=0.202  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHH
Q 003779          442 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM--EKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       442 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m--E~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      -+.|..-|++|..|=-.|.--|..-...+-..++|+..|...-|......+..+...  ---.+++..=...++.++.|+
T Consensus       127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~  206 (278)
T PF15294_consen  127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSEL  206 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHH
Confidence            477889999999999999999999999999999999999998888777555444310  000111111112345556777


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779          520 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  599 (796)
                      ..+.....   ++.+.|...|..--.++++.+-.---+++++++--.+    ..+|.       .|...+..=.++.|.|
T Consensus       207 ek~~~d~~---~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq----T~ay~-------NMk~~ltkKn~QiKeL  272 (278)
T PF15294_consen  207 EKALQDKE---SQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ----TAAYR-------NMKEILTKKNEQIKEL  272 (278)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc----cHHHH-------HhHHHHHhccHHHHHH
Confidence            66644333   3566666666665555555544433445555553333    22222       3344555555677777


Q ss_pred             HHHHH
Q 003779          600 QSKLR  604 (796)
Q Consensus       600 qSKLR  604 (796)
                      ..||+
T Consensus       273 Rkrl~  277 (278)
T PF15294_consen  273 RKRLA  277 (278)
T ss_pred             HHHhc
Confidence            77765

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.37  E-value=55  Score=40.41  Aligned_cols=32  Identities=41%  Similarity=0.427  Sum_probs=18.4

Q ss_pred             CCCCCccccCCccc---ccccccCCCCcCCccCCC
Q 003779          343 ASSGTLFEQTEPER---DSFMSSSSLNSMDVLGSS  374 (796)
Q Consensus       343 a~~~t~~~~tEp~k---~~~l~SsS~N~~~~lgss  374 (796)
                      |-+|-+.|.+=|.-   -+|..+.|.|+++++-+.
T Consensus       261 a~sGq~lP~tlP~E~Vpp~~r~~rs~~sis~~~p~  295 (1118)
T KOG1029|consen  261 AKSGQPLPKTLPPELVPPSFRSSRSANSISGLEPG  295 (1118)
T ss_pred             HhcCCCCCCCCChhhcCcccccccCCCCccccccC
Confidence            34455566655554   267777776666555443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=84.30  E-value=1.3e+02  Score=38.10  Aligned_cols=29  Identities=38%  Similarity=0.461  Sum_probs=22.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          522 VRLECNAADERAKILASEVIGLEEKALRL  550 (796)
Q Consensus       522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqL  550 (796)
                      |-++-.-|.||+-.|+.||.-|.||+-.|
T Consensus       316 aTldKEmAEERaesLQ~eve~lkEr~del  344 (1243)
T KOG0971|consen  316 ATLDKEMAEERAESLQQEVEALKERVDEL  344 (1243)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566678889999999998888888765

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=84.26  E-value=46  Score=33.01  Aligned_cols=7  Identities=29%  Similarity=0.311  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 003779          536 LASEVIG  542 (796)
Q Consensus       536 LAaEVV~  542 (796)
                      |..|+..
T Consensus        85 L~~eie~   91 (177)
T PF07798_consen   85 LQREIEK   91 (177)
T ss_pred             HHHHHHH
Confidence            3333333

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=84.19  E-value=19  Score=40.03  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779          491 VNQLKSEMEKLQEEIKVQLVELESFRNE-YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  569 (796)
Q Consensus       491 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE-rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~  569 (796)
                      |.+.+..++.|+.++..+.+.+++.++. ++.|+.++    +|-..|+..-+.=.+++.+.+..--+++-.+....   .
T Consensus       100 la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~----~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~---~  172 (352)
T COG1566         100 LAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNEL----ERRAELAQRGVVSREELDRARAALQAAEAALAAAQ---A  172 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH---H
Confidence            4444555666666666666666666663 66655544    35555654444445555666665555555555544   5


Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 003779          570 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK----ASGSGKS  612 (796)
Q Consensus       570 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~----asa~gKa  612 (796)
                      ..++...++++++...+..|..++..++.+.--|.+    ++..|.+
T Consensus       173 ~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP~dG~V  219 (352)
T COG1566         173 AQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAPVDGYV  219 (352)
T ss_pred             HHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECCCCceE
Confidence            667788888888888889999998888888877774    5555554

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=84.17  E-value=62  Score=34.45  Aligned_cols=121  Identities=20%  Similarity=0.252  Sum_probs=72.0

Q ss_pred             cccccc-CCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhhHHHH--
Q 003779          430 QHGFYS-TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN--  492 (796)
Q Consensus       430 ~~~F~s-~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~EsLa------~E----NsaLt~~yNqQ~~~v~--  492 (796)
                      |.-|-. +..+++|..+.++|+.|.+-==.    .+|-..+..++.+.++      ..    .+.|.+-++.-++.+.  
T Consensus        43 ~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~  122 (243)
T cd07666          43 ASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRC  122 (243)
T ss_pred             HHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence            444432 77899999999999988653222    3444444445544432      22    4448888998888888  


Q ss_pred             --HHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHH
Q 003779          493 --QLKSEMEKLQEEI-------KVQLVELESFRNEYANVRLECNAADERA-------KILASEVIGLEEKALRL  550 (796)
Q Consensus       493 --qLk~~mE~Lq~Ei-------~aQ~~~le~l~aErDaAq~E~naA~ERa-------K~LAaEVV~LEEk~lqL  550 (796)
                        .+...+..+...+       ..+..++.++-.+|+.+|+++....|-.       -.+..||..||+++.+.
T Consensus       123 ~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a  196 (243)
T cd07666         123 CKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA  196 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence              6666555554432       2333344455567777777766554422       24445555566666555

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=84.15  E-value=50  Score=34.67  Aligned_cols=94  Identities=20%  Similarity=0.223  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-----HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHH
Q 003779          515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL-----ERQLENSQSEISSYKKKISSLEKERQDFQSTI  589 (796)
Q Consensus       515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKl-----eKElE~l~~Er~S~~~q~ssi~kER~~l~stI  589 (796)
                      +..+...+++..-.+..+-+.|..++..++.++-.+.+.-..+     +.=...+-.++-++...+..+...-+.+...+
T Consensus        36 ~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~  115 (225)
T COG1842          36 MESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQV  115 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555444333222     11122355667778888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhcc
Q 003779          590 EALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       590 daLQEEKklLqSKLR~asa  608 (796)
                      ++|......|+.|+.++-.
T Consensus       116 ~~l~~~~~~Le~Ki~e~~~  134 (225)
T COG1842         116 EKLKKQLAALEQKIAELRA  134 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888888888876544

>PRK10869 recombination and repair protein; Provisional

Probab=84.12  E-value=91  Score=36.29  Aligned_cols=39  Identities=15%  Similarity=0.054  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779          540 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  578 (796)
Q Consensus       540 VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  578 (796)
                      ...+|+|+..++.=.-|--..++.+..-++..++++..+
T Consensus       298 l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L  336 (553)
T PRK10869        298 LAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL  336 (553)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            356677777665555554445566665556666666544

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=83.99  E-value=28  Score=41.54  Aligned_cols=37  Identities=27%  Similarity=0.515  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh
Q 003779          539 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER  582 (796)
Q Consensus       539 EVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER  582 (796)
                      |+..++.++.+|       +++|++-..+++.+++++..+.+-|
T Consensus       475 ei~~~~~~I~~L-------~~~L~e~~~~ve~L~~~l~~l~k~~  511 (652)
T COG2433         475 EIRARDRRIERL-------EKELEEKKKRVEELERKLAELRKMR  511 (652)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444554433       5566666666666666666554433

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=83.90  E-value=76  Score=35.25  Aligned_cols=80  Identities=24%  Similarity=0.303  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH-------HHHHHHHHHHH
Q 003779          527 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST-------IEALQEEKKMM  599 (796)
Q Consensus       527 naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~st-------IdaLQEEKklL  599 (796)
                      +...||.+ |-.+.+.+.+++.+|-.+---+--|.+.+..||+.|+-++.-+-.|=..+..-       ||+|=.|-+-|
T Consensus       123 ~~~~ere~-lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL  201 (319)
T PF09789_consen  123 HFPHERED-LVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYL  201 (319)
T ss_pred             ccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Confidence            33344443 33455666666666654444444455567777777777777665555555554       77777777778


Q ss_pred             HHHHHhhc
Q 003779          600 QSKLRKAS  607 (796)
Q Consensus       600 qSKLR~as  607 (796)
                      +.+|.++-
T Consensus       202 ~erl~q~q  209 (319)
T PF09789_consen  202 KERLKQLQ  209 (319)
T ss_pred             HHHHHHHH
Confidence            87777543

>TIGR02231 conserved hypothetical protein

Probab=83.89  E-value=8.4  Score=43.49  Aligned_cols=49  Identities=16%  Similarity=0.184  Sum_probs=35.7

Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                      .++.+..-...|..++..+..++..+...+..|++++..|+.+|.++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~  173 (525)
T TIGR02231       125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT  173 (525)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4455555556666777777777777778888888888888888887655

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>TIGR02231 conserved hypothetical protein

Probab=83.60  E-value=14  Score=41.74  Aligned_cols=30  Identities=10%  Similarity=0.197  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      .+.+|+.++++|+.+++.....++.+.+..
T Consensus        72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~  101 (525)
T TIGR02231        72 RLAELRKQIRELEAELRDLEDRGDALKALA  101 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777777776665555555554443

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=83.57  E-value=7.9  Score=44.58  Aligned_cols=67  Identities=25%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh-HHHhhhhHHHHHHHHHHHHHHH
Q 003779          533 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS-LEKERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       533 aK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ss-i~kER~~l~stIdaLQEEKklL  599 (796)
                      .+.|.+++-.++.++..+.++-=++.+|-++|+..-.....++.. +..+|.+++.+.+.|++|...+
T Consensus        61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~  128 (472)
T TIGR03752        61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL  128 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444433333333332 2244444444444444444333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=83.50  E-value=87  Score=39.52  Aligned_cols=147  Identities=22%  Similarity=0.255  Sum_probs=89.2

Q ss_pred             cCCCccccccccccccCCchhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH
Q 003779          420 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQ---------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV  490 (796)
Q Consensus       420 ~~~dE~s~e~~~~F~s~~~~~~faaLqqhIeDLT~---------EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~  490 (796)
                      ...||.+++..-++-..    -.-.|++.|+.|-.         -|.+..|-|.+.+..++     -..-++.||+-...
T Consensus       186 lr~~e~~Le~~~~~~~~----~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~-----y~~~~~ey~~~k~~  256 (1072)
T KOG0979|consen  186 LREDEKSLEDKLTTKTE----KLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE-----YKKHDREYNAYKQA  256 (1072)
T ss_pred             HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hHhhhHHHHHHHHH
Confidence            44566666555544332    22334444443322         13344455555555553     34568899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHhHhhh
Q 003779          491 VNQLKSEMEKLQEEIKVQLVELES-------FRNEYANVRLECNAADERAKILAS-------EVIGLEEKALRLRSNELK  556 (796)
Q Consensus       491 v~qLk~~mE~Lq~Ei~aQ~~~le~-------l~aErDaAq~E~naA~ERaK~LAa-------EVV~LEEk~lqLRS~eLK  556 (796)
                      +.-++.+++.|..+++-=.-..+.       ..+++.-++.+|++|..+.+....       +|+.+-.+..-++-.+.+
T Consensus       257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~  336 (1072)
T KOG0979|consen  257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEK  336 (1072)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888776543333222       345666778888888887766554       455555555556666666


Q ss_pred             hHHHhhhhHHHHHHHHHHH
Q 003779          557 LERQLENSQSEISSYKKKI  575 (796)
Q Consensus       557 leKElE~l~~Er~S~~~q~  575 (796)
                      .++.+++++..+...+.++
T Consensus       337 rq~~i~~~~k~i~~~q~el  355 (1072)
T KOG0979|consen  337 RQKRIEKAKKMILDAQAEL  355 (1072)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            6777777666666555544

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=83.50  E-value=13  Score=39.15  Aligned_cols=62  Identities=31%  Similarity=0.476  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      ||++...+.-.--|++.+++....+.+....++..+.|-=+.+..+.|+|=||-..||.++-
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            34444333333334444444444444444444444444444666667777676555555543

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=83.07  E-value=19  Score=42.19  Aligned_cols=140  Identities=23%  Similarity=0.259  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------------HHHHHH
Q 003779          461 RSLEASRALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF------------RNEYAN  521 (796)
Q Consensus       461 R~L~~s~~l~EsLa~-------ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l------------~aErDa  521 (796)
                      |+|+-+-++-+.|-.       .|+.|-++.|+--..|.+|+-++-|--.-+..+-.+.+-=            -.+|.+
T Consensus        76 ~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~  155 (596)
T KOG4360|consen   76 RDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSA  155 (596)
T ss_pred             chhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhh
Confidence            556666666555544       4444555566666666666655544433333333222211            234555


Q ss_pred             HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          522 VRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       522 Aq~E~na-A~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      -|.+..+ -.++.|.+-.|.+.|-.||..+|..++--+-.-..    ...+.+-+..++.++.+|=++.-+.+.++|||.
T Consensus       156 ~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~  235 (596)
T KOG4360|consen  156 FQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN  235 (596)
T ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555444 47888888888888888888888766532211000    223334455555555555555566666666655


Q ss_pred             HHHH
Q 003779          597 KMMQ  600 (796)
Q Consensus       597 klLq  600 (796)
                      -.|.
T Consensus       236 skLl  239 (596)
T KOG4360|consen  236 SKLL  239 (596)
T ss_pred             HHHH
Confidence            4433

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=82.84  E-value=46  Score=34.90  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          489 SVVNQLKSEMEKLQEEIKVQLVEL  512 (796)
Q Consensus       489 ~~v~qLk~~mE~Lq~Ei~aQ~~~l  512 (796)
                      +.|+=||-.+...|.||..-..++
T Consensus        10 GEIsLLKqQLke~q~E~~~K~~Ei   33 (202)
T PF06818_consen   10 GEISLLKQQLKESQAEVNQKDSEI   33 (202)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHH
Confidence            334444444444444433333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.59  E-value=13  Score=32.86  Aligned_cols=56  Identities=27%  Similarity=0.290  Sum_probs=22.7

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779          480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  535 (796)
Q Consensus       480 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~  535 (796)
                      |-.+|++--..+..|+.++++|+++-.+-....+.++.|-...+.+.++..+|.+.
T Consensus         9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433333333333333333333444444444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=82.57  E-value=16  Score=33.33  Aligned_cols=72  Identities=24%  Similarity=0.282  Sum_probs=59.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  512 (796)
Q Consensus       437 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  512 (796)
                      .+-.++..||+-|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++    ++.++..++..+
T Consensus        21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~   92 (96)
T PF08647_consen   21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNL   92 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHh
Confidence            455789999999999999998877777788888999999999999999999999999988    555555554443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=82.45  E-value=87  Score=34.82  Aligned_cols=67  Identities=21%  Similarity=0.292  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH-hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003779          540 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK-ERQDFQSTIEALQEEKKMMQSKLRKA  606 (796)
Q Consensus       540 VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k-ER~~l~stIdaLQEEKklLqSKLR~a  606 (796)
                      |..|..+|.+|+......+.+++.++.|.=-.+..+..=.. -=.-|++-++.|-.||+.||.+|-+.
T Consensus       137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~  204 (310)
T PF09755_consen  137 VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP  204 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            44555555555554444455555555444333333321000 01124566677779999999998754

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=82.28  E-value=1.3e+02  Score=36.88  Aligned_cols=266  Identities=15%  Similarity=0.207  Sum_probs=159.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---Hhh-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003779          439 NEDFAALEQHIEDLTQEKFALQRSLEA----SRALSESLA---AEN-----SSLTDSYNQQRSVVNQLKSEMEKLQEEIK  506 (796)
Q Consensus       439 ~~~faaLqqhIeDLT~EKfaLqR~L~~----s~~l~EsLa---~EN-----saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~  506 (796)
                      ..+.++|.+++|+.|+.|.++..-+..    -++-+++|-   .|.     ++++..-.+.-..-.+|..++..+..++.
T Consensus        23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~  102 (769)
T PF05911_consen   23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA  102 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999988764321    233444332   222     33343334444444455566666666555


Q ss_pred             HHHHHhhhhH---HHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHH
Q 003779          507 VQLVELESFR---NEYANVRLECNAADERA----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE  579 (796)
Q Consensus       507 aQ~~~le~l~---aErDaAq~E~naA~ERa----K~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~  579 (796)
                      .-.++..++.   .|+++...++.+...++    ..|..-+..+|.++.-||-.-.=++|||+=-..|++=-.+....+-
T Consensus       103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~  182 (769)
T PF05911_consen  103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAAS  182 (769)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4444444443   36666666666555554    4677788888888888888888889999988888888888888777


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCccCCCCCccccccccccccccccc-ccccccCCccccccCCCccccc
Q 003779          580 KERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSIDFGKTAASTVNASTSTEDLAIT-DTTLDNSNQDTHDDASLPRIDA  657 (796)
Q Consensus       580 kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa~~~ek~~a~~kDASTsTdDLai~-d~~~esSnqE~ldsas~qe~~v  657 (796)
                      |--.+-++-|-+|..|=+.|..-+|+ .++  .+ ..-+|-          .+++++ ++..     ++     +..+..
T Consensus       183 kqhle~vkkiakLEaEC~rLr~l~rk~lpg--pa-a~a~mk----------~ev~~~~~~~~-----~~-----r~r~~~  239 (769)
T PF05911_consen  183 KQHLESVKKIAKLEAECQRLRALVRKKLPG--PA-ALAQMK----------NEVESLGRDSG-----EN-----RRRRSP  239 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--hH-HHHHhH----------HHHHHhccccc-----cc-----cCCCCC
Confidence            76667778899999999999999986 332  11 000100          111111 1111     00     111111


Q ss_pred             cCCCCCCcCcccccc-cccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779          658 SGSTLLPESGRLALE-GLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE  736 (796)
Q Consensus       658 s~~pllpe~G~~af~-~~~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE  736 (796)
                      +..+     ....+. ..+....    +.++..-.=+-.++.|=..|..+|+..-..+.-.+-.=++...||-...-+|+
T Consensus       240 ~~~~-----~~~~~~~~~~~~~~----~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~  310 (769)
T PF05911_consen  240 SRPS-----SPHDFSPQNPQKRS----KESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLK  310 (769)
T ss_pred             Cccc-----ccccccccccccch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111     000010 1101111    22222222334567788888888888888888788888888889988888774

The function of this family is unknown.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=82.16  E-value=12  Score=34.06  Aligned_cols=63  Identities=21%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      .|......++.+..+.+..+..+...||+++.++              ..|+....++|-++|+..+.+...+..|.
T Consensus         3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl--------------~~Ek~kadqkyfa~mr~~d~l~~e~k~L~   65 (96)
T PF08647_consen    3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRL--------------EAEKAKADQKYFAAMRSKDALDNEMKKLN   65 (96)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4555666667778888999999999999999866              34456667777777777777776665554

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=81.95  E-value=40  Score=32.48  Aligned_cols=95  Identities=25%  Similarity=0.328  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      .-+..|+..|.-+.-|.-+|+..+++-.+-=+.|++|--.||..-.+.    ..+..++..|+.+       ++.+...|
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~e-------l~~l~~ry   84 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQE-------LEELQQRY   84 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHH
Confidence            456778888888888888888888888877788888877777665333    2222333333332       35566678


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003779          520 ANVRLECNAADERAKILASEVIGLEE  545 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LAaEVV~LEE  545 (796)
                      +++..=+.+=.|+.-.|.+.|..|-+
T Consensus        85 ~t~LellGEK~E~veEL~~Dv~DlK~  110 (120)
T PF12325_consen   85 QTLLELLGEKSEEVEELRADVQDLKE  110 (120)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            88888888888888777777776654

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=81.94  E-value=69  Score=33.33  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=48.9

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhH-HHHHHHHHhhhhc
Q 003779          684 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR-LELLTAQNMANEN  747 (796)
Q Consensus       684 R~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQR-LELltsq~ma~e~  747 (796)
                      .+..+|...|.+....=..|..+|..+.....+.-++|..-...|+..+.+ .++..-+.++.+.
T Consensus       178 ~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~  242 (264)
T PF06008_consen  178 SLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSET  242 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445889999999999999999999999999999999998888888865544 4444445554443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=81.87  E-value=82  Score=34.16  Aligned_cols=226  Identities=15%  Similarity=0.217  Sum_probs=139.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003779          439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESF  515 (796)
Q Consensus       439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l  515 (796)
                      .+.+..|++-+++|..-+-.-..-|....++-+.=+.|.+.+-.+|-++..   ....|+.++.+++.-+..-...-..+
T Consensus        71 ~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l  150 (337)
T cd09234          71 PDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTEL  150 (337)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            467889999999999999999999999888888888889999999987621   24456666655555444333333333


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH
Q 003779          516 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  595 (796)
Q Consensus       516 ~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEE  595 (796)
                      ..-|+.       ...-.+.|......|+..+-..+.  +-.. +.       +...++++       .+...|+.|..|
T Consensus       151 ~~~~~~-------~~~~l~lL~~~~~~l~~~iPs~~~--~~~~-~~-------~~~v~~Lr-------~ll~kl~~lk~e  206 (337)
T cd09234         151 HKAMNL-------HIANLKLLAGPLDELQKKLPSPSL--LDRP-ED-------EAIEKELK-------RILNKVNEMRKQ  206 (337)
T ss_pred             HHHHHH-------HHHHHHHHcCcHHHHHhhCCCccc--cCCc-cc-------HHHHHHHH-------HHHHHHHHHHHH
Confidence            333332       223344555555555555432111  1000 11       11222222       334456666677


Q ss_pred             HHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccccCCCccccccCCCCCCcCccccccccc
Q 003779          596 KKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLA  675 (796)
Q Consensus       596 KklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d~~~esSnqE~ldsas~qe~~vs~~pllpe~G~~af~~~~  675 (796)
                      ++.+...||...                    ..+|+          .+.++...                |. .|    
T Consensus       207 R~~l~~~Lk~k~--------------------~~DDI----------~~~ll~~~----------------~~-~~----  235 (337)
T cd09234         207 RRSLEQQLRDAI--------------------HEDDI----------TSKLVTTT----------------GG-DM----  235 (337)
T ss_pred             HHHHHHHHHHHh--------------------hcCCc----------hHHHHHhc----------------ch-hH----
Confidence            777777777422                    23444          11111111                10 12    


Q ss_pred             ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHH
Q 003779          676 VNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT  739 (796)
Q Consensus       676 ~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlt  739 (796)
                      -.|=+.+|..-+.....|...-..++.++.+|..+-......+....+..++-+..-|+|+.+-
T Consensus       236 e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay  299 (337)
T cd09234         236 EDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQKRESTISSLIASY  299 (337)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            2355778888888888888888889999999988888887776666667777777777777654

This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=81.76  E-value=11  Score=38.29  Aligned_cols=70  Identities=23%  Similarity=0.395  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 003779          457 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  536 (796)
Q Consensus       457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~L  536 (796)
                      ++++..|.......+.|..||++|.+.-.+....+.+|+.+++.|+.+       +..+..+|..    +-..++|++.|
T Consensus        86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~-------~~~~~eDY~~----L~~Im~RARkl  154 (161)
T TIGR02894        86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR-------LSTIEEDYQT----LIDIMDRARKL  154 (161)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHH
Confidence            456667777777788899999998876666555555555555555554       5677777776    34567777776


Q ss_pred             H
Q 003779          537 A  537 (796)
Q Consensus       537 A  537 (796)
                      +
T Consensus       155 ~  155 (161)
T TIGR02894       155 A  155 (161)
T ss_pred             H
Confidence            5

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=81.75  E-value=56  Score=36.04  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             HHhhHHHHHHhHHHHHHHHHHHhHHH
Q 003779          711 LAQSSKLKDLNNELSRKLEHQTQRLE  736 (796)
Q Consensus       711 sr~~~dLk~lN~ELsRKLE~qtQRLE  736 (796)
                      +--++.||.+|-||..|..++..||-
T Consensus       277 s~l~dQLK~qNQEL~ski~ELE~rLq  302 (307)
T PF10481_consen  277 SQLLDQLKAQNQELRSKINELELRLQ  302 (307)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            34578999999999999999888874

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=81.43  E-value=1.5e+02  Score=37.74  Aligned_cols=159  Identities=18%  Similarity=0.311  Sum_probs=84.6

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HHHhhhHHHHH-----H--H------------
Q 003779          436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASR----ALSES-------LAAENSSLTDS-----Y--N------------  485 (796)
Q Consensus       436 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~----~l~Es-------La~ENsaLt~~-----y--N------------  485 (796)
                      .+-+++++++.+-|..|+++.-.-.|.+....    .+...       +..-++-|+++     +  |            
T Consensus       230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~  309 (1141)
T KOG0018|consen  230 EKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIE  309 (1141)
T ss_pred             hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhh
Confidence            44567888888888888887777777766555    11111       11222222221     0  0            


Q ss_pred             ----HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----hhhHHHHHHH-----------------------
Q 003779          486 ----QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL----ECNAADERAK-----------------------  534 (796)
Q Consensus       486 ----qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~----E~naA~ERaK-----------------------  534 (796)
                          ........++.++++|+.++.+=-.+-+.|..|...-.+    +.|-.+++.+                       
T Consensus       310 k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~  389 (1141)
T KOG0018|consen  310 KDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRN  389 (1141)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence                001123345566666666666655555555555544444    3333333321                       


Q ss_pred             ---------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779          535 ---------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  594 (796)
Q Consensus       535 ---------~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE  594 (796)
                               .+-.=++.||+++.+++-+--++.+....+..-+.++.+.++.+-.+=+.++..+.-+-+
T Consensus       390 ~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~  458 (1141)
T KOG0018|consen  390 MRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEE  458 (1141)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhh
Confidence                     111225667777777666665666666666666666666666655555555544443333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=81.14  E-value=7.5  Score=42.00  Aligned_cols=49  Identities=22%  Similarity=0.298  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779          528 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  576 (796)
Q Consensus       528 aA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s  576 (796)
                      .+.++.+....++..|++++..|+..-=+..++...+..++..+..++.
T Consensus       232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~  280 (344)
T PF12777_consen  232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE  280 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3333333334444444444443333333333333333333333333333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=81.10  E-value=94  Score=34.33  Aligned_cols=88  Identities=20%  Similarity=0.342  Sum_probs=44.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      +|.+..+-.+.+-.++.+.|+.|.-.-=+++..+...-=++++++.+++.++--+..++..+-.+...++..|.-++...
T Consensus       165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i  244 (294)
T COG1340         165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI  244 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444455555554444444444444444444455555555555555555555555555555555555555


Q ss_pred             HHHHHHHH
Q 003779          597 KMMQSKLR  604 (796)
Q Consensus       597 klLqSKLR  604 (796)
                      +.|..+.+
T Consensus       245 k~l~~~~~  252 (294)
T COG1340         245 KALRAKEK  252 (294)
T ss_pred             HHHHHHHH
Confidence            55544444

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases

Probab=81.08  E-value=76  Score=33.25  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS  538 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAa  538 (796)
                      ......++-.+|++++.....+|+..+..|+.+..++..|.......-.
T Consensus       106 ~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~  154 (237)
T cd07657         106 AKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV  154 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344455566778888888888889999999998888888888766544

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.99  E-value=57  Score=34.45  Aligned_cols=31  Identities=23%  Similarity=0.402  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      ..+.+++.+|+.|.+|..++.-+|-.+...+
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DI   62 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDI   62 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666555555555544443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=80.80  E-value=1.9e+02  Score=37.63  Aligned_cols=84  Identities=20%  Similarity=0.204  Sum_probs=48.2

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003779          435 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  514 (796)
Q Consensus       435 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~  514 (796)
                      ..+...+++.+..+...+..|+...+-.++.+-+=.++|-.+-..|...-+...+.+..++..+-.+..+...-+.+.+.
T Consensus       845 ~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~  924 (1294)
T KOG0962|consen  845 LQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEE  924 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHH
Confidence            33445566666666666666666666555555555566666666666666666666666555554444444444444444


Q ss_pred             hHHH
Q 003779          515 FRNE  518 (796)
Q Consensus       515 l~aE  518 (796)
                      ++++
T Consensus       925 ~k~~  928 (1294)
T KOG0962|consen  925 LKNE  928 (1294)
T ss_pred             HHHH
Confidence            4444

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=80.58  E-value=1.2e+02  Score=35.03  Aligned_cols=78  Identities=22%  Similarity=0.333  Sum_probs=35.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH-HHHHHH-HHHHH------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 003779          468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEM-EKLQEE-IKVQL------VELESFRNEYANVRLECNAADERAKILASE  539 (796)
Q Consensus       468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m-E~Lq~E-i~aQ~------~~le~l~aErDaAq~E~naA~ERaK~LAaE  539 (796)
                      +++..+...+.+-...|.+-+..+-+-|+.+ +.|+.. .....      ++++.++.|++.++.+++....+...|-.|
T Consensus       224 ~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e  303 (511)
T PF09787_consen  224 ELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAE  303 (511)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555566665544444444433 223331 11011      125555555555555555555555444444


Q ss_pred             HHHHHH
Q 003779          540 VIGLEE  545 (796)
Q Consensus       540 VV~LEE  545 (796)
                      ...+|.
T Consensus       304 ~~d~e~  309 (511)
T PF09787_consen  304 LQDLEA  309 (511)
T ss_pred             HHHHHH
Confidence            444443

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=80.38  E-value=36  Score=34.49  Aligned_cols=57  Identities=14%  Similarity=0.255  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779          464 EASRALSESLAAENSSLTDS--------------YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  520 (796)
Q Consensus       464 ~~s~~l~EsLa~ENsaLt~~--------------yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  520 (796)
                      ..-.++.++|.+|+=--+++              .+.....+..|+.+++.++.+|..-...++..+.+|.
T Consensus        30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~  100 (188)
T PF03962_consen   30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE  100 (188)
T ss_pred             hhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44578899999987554443              4455555566666666665555544444444444443

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=80.35  E-value=77  Score=38.13  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=11.2

Q ss_pred             ccccchhhHHHHHhhHHHHHHHHH
Q 003779          674 LAVNIPHDQMRMIHNINALISELA  697 (796)
Q Consensus       674 ~~~~Ip~DQlR~IdSInaLisELa  697 (796)
                      .+--||    |.|+-|-..+.++.
T Consensus       417 ~~Giip----ral~~lF~~~~~~~  436 (670)
T KOG0239|consen  417 DPGIIP----RALEKLFRTITSLK  436 (670)
T ss_pred             cCCccH----HHHHHHHHHHHhhc
Confidence            334677    66666665555443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.33  E-value=57  Score=38.96  Aligned_cols=164  Identities=19%  Similarity=0.199  Sum_probs=90.5

Q ss_pred             ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003779          428 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV  507 (796)
Q Consensus       428 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a  507 (796)
                      +-||+=|=-.++-=-+++|.||.-|-..|-.-...|+-.++=-+.+-.--+.|.+||-+-.-.-+-|-..|.+|.+-.  
T Consensus       569 ~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~--  646 (741)
T KOG4460|consen  569 QVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF--  646 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--
Confidence            446665555555555667777777665554433344444444444444445566666543333333333333333311  


Q ss_pred             HHHHhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 003779          508 QLVELES-FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ  586 (796)
Q Consensus       508 Q~~~le~-l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~  586 (796)
                       ...+-. ..+|||= .+|..-+-...+.|++-++.+..+..+-|+-   ..+-++.      .-+.+|+.-++.|..++
T Consensus       647 -~~~lp~l~~AErdF-k~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H---~~~v~~a------l~K~~Y~l~~~Q~~~iq  715 (741)
T KOG4460|consen  647 -HSELPVLSDAERDF-KKELQLIPDQLRHLGNAIETVTMKKDKQQQH---MEKVLSA------LPKPTYILSAYQRKCIQ  715 (741)
T ss_pred             -cccCCcchhHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh------ccCCcccccHHHHHHHH
Confidence             111122 2677775 4566777777777777777766666543221   1222222      22566777788888899


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 003779          587 STIEALQEEKKMMQSKLR  604 (796)
Q Consensus       587 stIdaLQEEKklLqSKLR  604 (796)
                      +++..|-++....-.+++
T Consensus       716 siL~~L~~~i~~~~k~VK  733 (741)
T KOG4460|consen  716 SILKELGEHIREMVKQVK  733 (741)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999888887765554444

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=80.24  E-value=81  Score=33.04  Aligned_cols=32  Identities=34%  Similarity=0.519  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          444 ALEQHIEDLTQEKFALQRSLEASRALSESLAA  475 (796)
Q Consensus       444 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~  475 (796)
                      .|..-|.+|-..=-++|-+|+.+..+-+.|.+
T Consensus        40 ~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled   71 (193)
T PF14662_consen   40 QLAEEITDLRKQLKSLQQALQKAKALEEELED   71 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34344444444444555555555544444443

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=80.09  E-value=13  Score=34.79  Aligned_cols=81  Identities=22%  Similarity=0.337  Sum_probs=45.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003779          438 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  506 (796)
Q Consensus       438 ~~~~faaLqqhIeDLT~EKfa-----------LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~  506 (796)
                      ..-||++||.||..+|-=++.           +.+-+.=+|=..|=|-.-.+.|.+........+.++..+.++|+..++
T Consensus        25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~  104 (118)
T PF13815_consen   25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK  104 (118)
T ss_pred             hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999977643322           223344445555555555555555555555555555555555555555


Q ss_pred             HHHHHhhhhHHH
Q 003779          507 VQLVELESFRNE  518 (796)
Q Consensus       507 aQ~~~le~l~aE  518 (796)
                      .+..++..++.|
T Consensus       105 ~~~~~~k~lk~E  116 (118)
T PF13815_consen  105 KQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHh
Confidence            555555555444

>PRK10698 phage shock protein PspA; Provisional

Probab=80.08  E-value=79  Score=32.82  Aligned_cols=46  Identities=11%  Similarity=0.275  Sum_probs=19.9

Q ss_pred             hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          563 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       563 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                      .|..++......+..+...-..|...|..+...+..|-.|.+.+.+
T Consensus       103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a  148 (222)
T PRK10698        103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS  148 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444433333444444444444444444444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	796
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	7e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	2e-07
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	6e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	8e-05
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	9e-05
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	9e-05
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.0 bits (191), Expect = 7e-15
 Identities = 67/528 (12%), Positives = 142/528 (26%), Gaps = 156/528 (29%)

Query: 381 MEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL-----GSNESSIENQHGFYS 435
           ++       SK    +I      + +    +       RL        E  ++    F  
Sbjct: 38  VQDMPKSILSKEEIDHI------IMSKDAVSG----TLRLFWTLLSKQEEMVQK---FVE 84

Query: 436 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-SVVNQL 494
                ++  L   I+   ++   + R     R   + L  +N      YN  R     +L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAK-YNVSRLQPYLKL 140

Query: 495 KSEMEKLQEEIKV----------QLVELESFRNE-----------YANVRLECNAADERA 533
           +  + +L+    V            V L+   +            + N++  CN+ +   
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199

Query: 534 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ---------- 583
           ++L      L     ++  N         N +  I S + ++  L K +           
Sbjct: 200 EMLQK----L---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 584 ----------DFQSTI----------EAL--QEEKKMMQSKLRKASGSGKSID-FGKTAA 620
                     +    I          + L       +            +      K   
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--- 309

Query: 621 STVNASTSTEDL-----------------AITD--TTLDNSNQDTHDDASLPR-IDASGS 660
                    +DL                 +I D   T DN      D   L   I++S +
Sbjct: 310 ---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLN 364

Query: 661 TLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE------KEELVQALSSELAQS 714
            L P   R   + L+V  P           A I  + L        +  V  + ++L + 
Sbjct: 365 VLEPAEYRKMFDRLSV-FPPS---------AHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 715 SKLKDLNNELSRKLEHQTQRLELLTAQNMA--NENI--SFRQPDSASTHD---------- 760
           S ++    E +  +         +  +N    + +I   +  P +  + D          
Sbjct: 415 SLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 761 --HTAY----ADEGDEVVE--RV---LGWI-MKLFPGGPSRRRTSKLL 796
             H  +     +  + +     V     ++  K+     +   +  +L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 2e-11
 Identities = 93/709 (13%), Positives = 194/709 (27%), Gaps = 265/709 (37%)

Query: 28  DFSLHDQHHLEADRVRV------TDLDGAGTSDGPDKAVVSLPLVMH-----NDDNKALK 76
           DF   +  +   D + V       + D     D P K+++S   + H     +  +  L+
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLR 66

Query: 77  L-----AQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQE 131
           L     ++Q + V    ++      E  L  +  +L                       E
Sbjct: 67  LFWTLLSKQEEMV----QKF----VEEVLRINYKFLMSPIKT-----------------E 101

Query: 132 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGND 191
            +  +    +Y   + RL +                                      N 
Sbjct: 102 QRQPSMMTRMYIEQRDRLYND-------------------------------------NQ 124

Query: 192 SFPKVPTLVNSGPSHDFVTKISPQNSVST-LFQSKPSNAIAL----GNG----------- 235
            F K             V+++ P   +   L + +P+  + +    G+G           
Sbjct: 125 VFAK-----------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 236 HSFHSSSEGTAH-LTTSTGGSASEV-----GLNTPSTTNFSDPVSFNTGEGKPSNSASGL 289
           +      +     L      S   V      L      N++     ++      +S    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 290 AS--LQSTPFKRS-------------EYSGYNFD------------------AGNSFNHV 316
               L+S P++                     F+                  +  +  H+
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 317 PVSSATNKFTLGKSRASFLDSLNV-------------PRASS--GTL----------FEQ 351
            +   +   T  + ++  L  L+              PR  S               ++ 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 352 TEPERDSFMSSSSLNSMDVLGSSPAQNPSMEK---ETTGAFSKTTTSNIPSA------FD 402
              ++ + +  SSLN ++         P+  +   +    F  +   +IP+       FD
Sbjct: 350 VNCDKLTTIIESSLNVLE---------PAEYRKMFDRLSVFPPSA--HIPTILLSLIWFD 398

Query: 403 YLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRS 462
                 V  SD   +       S +E        K  ++       I  +  E   L+  
Sbjct: 399 ------VIKSDVMVVVNKLHKYSLVE--------KQPKESTI---SIPSIYLE---LKVK 438

Query: 463 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE--------------MEKLQEEIKVQ 508
           LE   AL       + S+ D YN  ++  +                   ++ ++   ++ 
Sbjct: 439 LENEYAL-------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 509 LVELESFRNEYANVR-LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 567
           L     FR  + + R LE        KI           A     + L   +QL+  +  
Sbjct: 492 L-----FRMVFLDFRFLE-------QKIRHDST------AWNASGSILNTLQQLKFYKPY 533

Query: 568 IS----SYKKKISSLEKERQDFQSTIEA---LQEEKKMMQSKLRKASGS 609
           I      Y++ ++++     DF   IE      +   +++  L     +
Sbjct: 534 ICDNDPKYERLVNAIL----DFLPKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 52/351 (14%), Positives = 96/351 (27%), Gaps = 129/351 (36%)

Query: 428 ENQHGF------YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT 481
           E+Q+ +      +     ++F    + ++D+ +   +     E    +            
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILS---KEEIDHIIMSK--------- 58

Query: 482 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY----ANVRLECNAADERAKILA 537
           D+ +    +   L S+    QEE+  + VE E  R  Y    + ++ E            
Sbjct: 59  DAVSGTLRLFWTLLSK----QEEMVQKFVE-EVLRINYKFLMSPIKTEQR---------- 103

Query: 538 SEVIGLEEKALRLRSNELKLERQLENSQSEISSY----KKKISSLEKERQDFQSTIEALQ 593
                  + ++  R    + +R L N     + Y     +    L +          AL 
Sbjct: 104 -------QPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQ----------ALL 145

Query: 594 EEKKMMQSKLRKAS--------GSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQD 645
           E        LR A         GSGK+                   +A+ D  L    Q 
Sbjct: 146 E--------LRPAKNVLIDGVLGSGKTW------------------VAL-DVCLSYKVQC 178

Query: 646 THDDA----SLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKE 701
             D      +L                        N P   + M+  +   I        
Sbjct: 179 KMDFKIFWLNL--------------KN-------CNSPETVLEMLQKLLYQIDP------ 211

Query: 702 ELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENI--SF 750
                         ++  +  EL R L+ +     LL   N+ N     +F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 58/325 (17%), Positives = 114/325 (35%), Gaps = 46/325 (14%)

Query: 442  FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV---------- 491
               LEQ    L +EK  LQ  L+A   L          L     +   ++          
Sbjct: 880  LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939

Query: 492  ----NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 547
                 QL++E +K+Q+++     +LE        ++LE   AD + K +  +++ +E++ 
Sbjct: 940  EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999

Query: 548  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL-----QEEKKMMQSK 602
             +L      LE ++ +  + ++  ++K  +L K +   +S I  L     +EEK   + +
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059

Query: 603  LRKASGSGKSIDFGKTAASTVNASTSTED-LAITDTTLDNSNQDTHDDASLPRIDASGST 661
              K    G+S D  +  A         +  LA  +  L  +     D+ S          
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN------- 1112

Query: 662  LLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN 721
                               + ++ I  + + IS+L  + E    A +    Q   L +  
Sbjct: 1113 -------------------NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

Query: 722  NELSRKLEHQTQRLELLTAQNMANE 746
              L  +LE              ++ 
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDY 1178

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 72.2 bits (177), Expect = 5e-13
 Identities = 25/171 (14%), Positives = 63/171 (36%)

Query: 436  TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 495
             K   +    +  I+ +  +   ++          + L    S LT +  ++      L 
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 496  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 555
                K +  I    V L+        +       +  +  L  ++  L+ +   L++   
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 556  KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
            K E +L+ + + +     + ++  K+ ++ +S I  LQE+ +  ++   KA
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 68.3 bits (167), Expect = 7e-12
 Identities = 33/195 (16%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 417  IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 476
            I+++  +   +E+Q+     K  ++   LE+ + DLT      +   +    L     + 
Sbjct: 985  IKKMEDDILIMEDQN----NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040

Query: 477  NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 536
             S L     ++     +L+    KL+ E      ++   + + A ++ +    +E  +  
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 537  ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE- 595
             + +     +         +LE  + + Q ++ S K   +  EK+++D    +EAL+ E 
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 596  -----KKMMQSKLRK 605
                     Q +LR 
Sbjct: 1161 EDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 23/161 (14%), Positives = 62/161 (38%), Gaps = 3/161 (1%)

Query: 439  NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 498
             E    L +           L+  L+      + L      L    +     + +L++++
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 499  EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 558
             +L+ ++  +  EL++      +   + N A ++ + L S +  L+E     ++   K E
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 559  RQLENSQSEISSYKKKISSLEKE---RQDFQSTIEALQEEK 596
            +Q  +   E+ + K ++         +Q+ + +     ++K
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 53/324 (16%), Positives = 113/324 (34%), Gaps = 36/324 (11%)

Query: 435  STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 494
             T+  E+  A ++ ++   + +   +  L+        L  E + L     ++     +L
Sbjct: 852  VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ----EKLQAETEL 907

Query: 495  KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 554
             +E E+++  +  +  ELE   +E             R +        L+ +  +++   
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEME----------ARIEEEEERSQQLQAEKKKMQQQM 957

Query: 555  LKLERQLE-------NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607
            L LE QLE         Q E  +   KI  +E +    +     L +E+K+++ ++   +
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 608  GSGKSIDFGKTAASTVNAS--TSTEDLAITDTTLDNSNQDTHD------------DASLP 653
             +    +      + +     +   +L +     + S Q+                  + 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 654  RIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNI-NALISELALEKEELVQALSSELA 712
             + A  + L  +  +   E  A     +      N     I EL     +L + L SE A
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 713  QSSKLKDLNNELSRKLEHQTQRLE 736
              +K +    +LS +LE     LE
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 52/312 (16%), Positives = 110/312 (35%), Gaps = 27/312 (8%)

Query: 452  LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 511
            L      L +       +      E     +   +  + + +L+ +  +L EE  +   +
Sbjct: 842  LFFXIXPLLKVTRQEEEMQA-KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900

Query: 512  LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 571
            L++    YA        A+E    LA++   LEE    + +   + E + +  Q+E    
Sbjct: 901  LQAETELYAE-------AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 572  KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID------------FGKTA 619
            ++++  LE++ ++ ++  + LQ EK     K++K       ++              +  
Sbjct: 954  QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

Query: 620  ASTVNASTSTEDLAITDTTLDNSNQDTHDD--ASLPRIDASGSTLLPESGRLALEG---L 674
            +         E+ A   T L N ++    +    L + + S   L  E  +  LEG    
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL--EKIKRKLEGESSD 1071

Query: 675  AVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 734
                  +    I  + A +++   E +  +  L  E +Q +       EL   +    + 
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 735  LELLTAQNMANE 746
            LE   A     E
Sbjct: 1132 LESEKAARNKAE 1143

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 445  LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504
            L++ I++  +E  +L   +        +   +  S  +             + +  LQEE
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

Query: 505  IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 564
            I     EL   + E   +    +      + L SE   L+E+   L++ + +L R++ + 
Sbjct: 993  IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQ 1049

Query: 565  QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603
              EI+         E   +      + L+ +    + + 
Sbjct: 1050 AKEIT---------ETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 3/149 (2%)

Query: 458  ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 517
               RS+E  + L   L  +   L    ++Q      L  +M  L+     +  +L S   
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 518  EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 577
                   E   A  R   L  E+  L ++  + ++ +  +E   +  + E    ++ +S 
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET---EQLVSE 1027

Query: 578  LEKERQDFQSTIEALQEEKKMMQSKLRKA 606
            L+++    ++  E L         ++ + 
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITET 1056

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 443  AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 502
              LE  I  L ++       ++      +SL  + ++L  +Y+ +   +      +   +
Sbjct: 924  IGLENKIMQLQRK-------IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 503  EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 562
            EE K     + S + E A +R E +      K +       + +         +L+ Q  
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE---TEQLVSELKEQNT 1033

Query: 563  NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
              ++E     ++I    KE  +     + L EE K ++  L   
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETME--KKLVEETKQLELDLNDE 1075

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 4e-08
 Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 35/242 (14%)

Query: 500  KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 559
             +Q+ ++  L  +   R   A V L+C      AK    ++        R +   + LE 
Sbjct: 869  IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928

Query: 560  QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTA 619
            ++   Q +I    K+  SL ++  + + T     E+ +    +LR +          +  
Sbjct: 929  KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS--------EEEAK 980

Query: 620  ASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIP 679
             +T    +  E++A     L  +  +                         +E  A    
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKT----------------------IEEWADKYK 1018

Query: 680  HDQMRMIHNINALISELALEKEELVQALSSEL-----AQSSKLKDLNNELSRKLEHQTQR 734
            H+  +++  +    + L  EKEEL + +  +          KL +   +L   L  +  R
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

Query: 735  LE 736
             +
Sbjct: 1079 YQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 6e-07
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 446  EQHIEDLTQEKFALQRSLEASRALSE--SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 503
              H     +    LQ       A  E   L  E  S+     + + +   L++++ +LQ 
Sbjct: 880  RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV----ERYKKLHIGLENKIMQLQR 935

Query: 504  EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 563
            +I  Q  E +S   +  N  LE   + E  K+ +       E+             ++ +
Sbjct: 936  KIDEQNKEYKSLLEKMNN--LEITYSTETEKLRS-----DVERLRMSEEEAKNATNRVLS 988

Query: 564  SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
             Q EI+  +K++   + E++  +   +  + E + + S+L++ 
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 443  AALEQHIEDLTQEKFALQRSLEASRALSE---SLAAENSSLTDSYNQQRSVVNQLKSEME 499
                   E L  +   L+ S E ++  +    SL  E + L    +Q ++    ++   +
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015

Query: 500  KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 559
            K + E +  + EL+    +   ++ E    + R    A E+    EK L   + +L+L+ 
Sbjct: 1016 KYKHETEQLVSELKE---QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072

Query: 560  QLENSQSE 567
              E  + +
Sbjct: 1073 NDERLRYQ 1080

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 23/171 (13%), Positives = 66/171 (38%)

Query: 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 496
           +  E  A   Q +E+  +     +R ++   + ++    +         + + +      
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160

Query: 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 556
           + E++  ++ +   +LE           +C   +E  K + + +  LE +A +    E K
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDK 220

Query: 557 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607
            E +++    ++   + +    E+     + +I+ L++E    + K +  S
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 271

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 54.3 bits (130), Expect = 5e-08
 Identities = 24/168 (14%), Positives = 64/168 (38%)

Query: 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 498
            E     E+   D   +  +L R ++      +      ++      +     ++ +  M
Sbjct: 68  QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127

Query: 499 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 558
           + ++   +    ++E    +    +     AD + + +A +++ +E    R        E
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187

Query: 559 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
            +    + EI +    + SLE + + +    +  +EE K++  KL++A
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 20/158 (12%), Positives = 60/158 (37%)

Query: 449 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 508
           ++ + ++   L+   E +   ++   A+  +  D   Q    +  L+ +++  ++E+   
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 509 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 568
              L+  + +      +   A+     L   +   EE+  R +       ++LE ++   
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
              ++ +  +E   Q  +  +E  + + K  +     A
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 158

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 21/173 (12%), Positives = 61/173 (35%)

Query: 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 496
           +  ++  +L++ ++    E      +L+ ++   E    + +            +   + 
Sbjct: 38  QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97

Query: 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 556
           E+++ QE +   L +LE                + RA+    ++   E +    +     
Sbjct: 98  ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 157

Query: 557 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 609
            +R+ E    ++   +  +   E+  +  +     L+EE K + + L+     
Sbjct: 158 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQ 210

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 19/164 (11%), Positives = 64/164 (39%)

Query: 444 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 503
           A+++ ++ L  +K       + + A  ++    +  L D     +  +   + E++K  E
Sbjct: 3   AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62

Query: 504 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 563
            +K    +LE    +  +   +  + + R ++   E+   +E+         + E+  + 
Sbjct: 63  ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122

Query: 564 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607
           S+  +   + +    E++ +  +  ++  +   +    K  + +
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 166

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 17/167 (10%), Positives = 60/167 (35%)

Query: 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 499
           ++     + ++D  ++    ++    + A   SL        +  ++ +  +     ++E
Sbjct: 55  DELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLE 114

Query: 500 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 559
           + ++        ++   +       +    + + K         + K   +    + +E 
Sbjct: 115 EAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 174

Query: 560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
            LE ++      + K + LE+E +   + +++L+ + +    K  K 
Sbjct: 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKY 221

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 26/170 (15%), Positives = 64/170 (37%)

Query: 437 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 496
           +   D  A E   + L  E  +LQ+ L+A+    +  +       +            ++
Sbjct: 24  EAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83

Query: 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 556
           ++  L   I++   EL+  +   A    +   A++ A      +  +E +A +       
Sbjct: 84  DVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEI 143

Query: 557 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
            E QL+ ++       +K   + ++    +S +E  +E  ++ + K  + 
Sbjct: 144 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAEL 193

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 18/168 (10%), Positives = 57/168 (33%)

Query: 439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 498
            +     E+  ++  +    ++   +      E    +                ++  ++
Sbjct: 110 LQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL 169

Query: 499 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 558
             ++ +++      E    + A +  E        K L ++     +K  +       L 
Sbjct: 170 VIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229

Query: 559 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 606
            +L+ +++     ++ ++ LEK   D +  + A + + K +  +L  A
Sbjct: 230 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 22/164 (13%), Positives = 60/164 (36%)

Query: 440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 499
           +     E+ ++ +       +  +E      +            Y +    +  ++S++E
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177

Query: 500 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 559
           + +E  ++   +      E   V     + + +A+  + +    EE+   L     + E 
Sbjct: 178 RAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 237

Query: 560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 603
           + E ++  ++  +K I  LE E    +   +A+ EE     + +
Sbjct: 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 6/250 (2%)

Query: 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 551
           + +K +M+ L+ + +  L   +    +           ++    L  ++   E++  +  
Sbjct: 2   DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61

Query: 552 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK 611
                 + +LE ++ + +  +  ++SL +  Q F+  ++  QE       KL +A    K
Sbjct: 62  EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE---K 118

Query: 612 SIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLAL 671
           + D  +     + +    ++  +    +         + +  + +     L+     L  
Sbjct: 119 AADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 178

Query: 672 EGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ 731
                            +   I  +    + L         +  K ++    LS KL+  
Sbjct: 179 AEERAE---LSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

Query: 732 TQRLELLTAQ 741
             R E     
Sbjct: 236 ETRAEFAERS 245

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 18/117 (15%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550
           ++ L+  + + ++++   L + E+      N+  E  A   +       +     K   +
Sbjct: 20  IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79

Query: 551 RS--NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605
           +   +E+K ER+L +   E    K++ +   +E ++ Q+ I+   E+++ ++ ++ +
Sbjct: 80  QKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 26/160 (16%), Positives = 64/160 (40%), Gaps = 4/160 (2%)

Query: 449 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 508
           +  L ++       L      +  L   ++ ++ S +Q  S+  +L+     L+      
Sbjct: 8   LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQT 67

Query: 509 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 568
             +    +      R +     E    L + +  L+E+   L+ N  K+E + + +Q  +
Sbjct: 68  DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML 127

Query: 569 SSYKKKISSLEKER----QDFQSTIEALQEEKKMMQSKLR 604
           +  +K+ ++LE +     +  Q  +E    E K+ +++L 
Sbjct: 128 NHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLT 167

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 42.8 bits (100), Expect = 8e-05
 Identities = 20/111 (18%), Positives = 49/111 (44%)

Query: 497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 556
           ++ +LQ++++     L +  +    +R       +    L S    L+E+   L +++ +
Sbjct: 7   KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQ 66

Query: 557 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607
            ++     Q+ + + ++      +   D Q+ I +LQEE K ++  L K  
Sbjct: 67  TDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 1/115 (0%)

Query: 492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-ILASEVIGLEEKALRL 550
             +     K +     +L+E+E    +  N         +  K I  SE   L +   +L
Sbjct: 23  CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL 82

Query: 551 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605
                K+  ++   ++ I +++  I  L        + I  L+++   ++S  ++
Sbjct: 83  TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 16/115 (13%), Positives = 49/115 (42%)

Query: 491 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 550
           +  +K E  +L+E ++      +    +  ++  E N    + +     +   EE+  +L
Sbjct: 15  MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74

Query: 551 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 605
             N+++LE +++     +   ++  + L  +++  +     L+ +   ++  L K
Sbjct: 75  IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 129

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 27/163 (16%), Positives = 70/163 (42%), Gaps = 14/163 (8%)

Query: 445 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 504
           LE  +E+L  + + L+  +   + L E                       + +  +L+EE
Sbjct: 5   LEDKVEELLSKNYHLENEVARLKKLLERAEER--------------AELSEGKSAELEEE 50

Query: 505 IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 564
           +K     L+S   +      + +  +E  K+L+ ++   E +A     +  KLE+ +++ 
Sbjct: 51  LKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110

Query: 565 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 607
           + E+ + K K  ++ +E +  +  +E L  +   +++++ +  
Sbjct: 111 EDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	796
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.32
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.17
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.16
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.02
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.42
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.13
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.07
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.02
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.79
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.48
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.33
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.24
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.45
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	95.43
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.43
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	95.13
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.66
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	94.59
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.49
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	94.39
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	94.3
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	94.06
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.93
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.81
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	93.39
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	93.04
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	92.56
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	92.36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	92.35
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.89
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	91.82
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.61
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	91.59
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	91.09
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	90.35
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	90.26
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	89.76
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	89.66
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	89.55
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	89.35
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	89.29
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	88.77
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	88.51
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	88.47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	87.88
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	86.65
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	86.35
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	85.67
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	84.94
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	83.9
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	83.57
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.16
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	82.35
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	82.31
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	81.96
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	81.89
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	81.54
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.44
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	80.8
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	80.37
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	80.13
2wt7_B	90	Transcription factor MAFB; transcription, transcri	80.02

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.32  E-value=7.2e-07  Score=104.78  Aligned_cols=54  Identities=30%  Similarity=0.273  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 003779          687 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  740 (796)
Q Consensus       687 dSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  740 (796)
                      ..+..-+.+|+.+.+++...|..+.....++.....+|.++|+.++++||-+-.
T Consensus      1112 ~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~ 1165 (1184)
T 1i84_S         1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165 (1184)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344455555555555555555555666666667777777777777765433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.17  E-value=5.5e-06  Score=97.44  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhHHHH
Q 003779          687 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL  737 (796)
Q Consensus       687 dSInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL  737 (796)
                      ..+..-+.+++.+.+.+...|........+++...++|..+++.+..+|+-
T Consensus      1084 ~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee 1134 (1184)
T 1i84_S         1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134 (1184)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444455555555555555555444443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.16  E-value=0.0043  Score=56.95  Aligned_cols=21  Identities=10%  Similarity=-0.013  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 003779          443 AALEQHIEDLTQEKFALQRSL  463 (796)
Q Consensus       443 aaLqqhIeDLT~EKfaLqR~L  463 (796)
                      .+|+.-|+.+..+.-.|...+
T Consensus         9 ~~l~~~~~~~~~~~~~l~~~l   29 (284)
T 1c1g_A            9 QMLKLDKENALDRADEAEADK   29 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHH
Confidence            334444444433333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.02  E-value=0.0085  Score=54.97  Aligned_cols=110  Identities=7%  Similarity=0.044  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003779          441 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  520 (796)
Q Consensus       441 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  520 (796)
                      ....|+..|+++..+.-.+...+.....-.+.+..+-..+....+.....+..+...+.+++.++......+..+..+..
T Consensus        21 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (284)
T 1c1g_A           21 RADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELD  100 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555566666666666666666666666666666565666666666665555555555555555555


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          521 NVRLECNAADERAKILASEVIGLEEKALRL  550 (796)
Q Consensus       521 aAq~E~naA~ERaK~LAaEVV~LEEk~lqL  550 (796)
                      ....++..+.++...+..++..++.++..+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (284)
T 1c1g_A          101 RAQERLATALQKLEEAEKAADESERGMKVI  130 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444444444444444444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.42  E-value=0.027  Score=56.23  Aligned_cols=127  Identities=13%  Similarity=0.151  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHH
Q 003779          447 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRL  524 (796)
Q Consensus       447 qhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--~aErDaAq~  524 (796)
                      ..|+.|..++-.|...|+...+-...|.+.-.++...+......+..++.+++.++.-|+.....+.++  .-||++...
T Consensus        18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k   97 (256)
T 3na7_A           18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI   97 (256)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            344555555555544444444433444444444444444444444444444444444444444444444  457888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779          525 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  573 (796)
Q Consensus       525 E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~  573 (796)
                      +...+..+...|..++..+++++-.++...-.++.+++.+..++...++
T Consensus        98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~  146 (256)
T 3na7_A           98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES  146 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888776655544445555544444433333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.13  E-value=0.035  Score=72.26  Aligned_cols=152  Identities=16%  Similarity=0.253  Sum_probs=101.9

Q ss_pred             cccccccCCchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhhHHHHHHHH
Q 003779          429 NQHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLA-----------------AENSSLTDSYNQ  486 (796)
Q Consensus       429 ~~~~F~s~~~~~~faa-----LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa-----------------~ENsaLt~~yNq  486 (796)
                      +-|+|.++..==+|=.     |.+..+++...+--|+.||+|=.+.+++++                 .|.+++...--.
T Consensus      1887 ~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A         1887 GRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777666643     567778888888888888888665554443                 233444444444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003779          487 QRSVVNQLKSEMEKLQEEIKVQLVELESF-----------------RNEYANVRLECNAADERAKILASEVIGLEEKALR  549 (796)
Q Consensus       487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-----------------~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lq  549 (796)
                      ....+++-|..+++.+.++++|..+.+..                 +.+.+.|+.++.+|.++.+....++..||+++.+
T Consensus      1967 ~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A         1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555556666666655555544443                 4566777888888888888888888888888888


Q ss_pred             HHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 003779          550 LRSNELKLERQLENSQSEISSYKKKISSLEK  580 (796)
Q Consensus       550 LRS~eLKleKElE~l~~Er~S~~~q~ssi~k  580 (796)
                      |+.+-=++-+|.+.++.|++.+.+++..+++
T Consensus      2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A         2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777666666777777777777777665443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.07  E-value=0.093  Score=52.33  Aligned_cols=131  Identities=11%  Similarity=0.112  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HhhhHHHH
Q 003779          454 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--LECNAADE  531 (796)
Q Consensus       454 ~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq--~E~naA~E  531 (796)
                      .+-..|...+..-.+-.+.|.++-..+.+++..-...+..++.++.+++.+|..-...++..+.-.+++.  .++.+...
T Consensus        18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k   97 (256)
T 3na7_A           18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI   97 (256)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            3444444444444555666666666666666666666666777666666666665555555544444322  23444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 003779          532 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  584 (796)
Q Consensus       532 RaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~  584 (796)
                      ....+..++..||++++++.-..=.++.+++.+..++.....++..+..+++.
T Consensus        98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~  150 (256)
T 3na7_A           98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN  150 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555554444444555555555555555555555444444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.06  E-value=0.02  Score=74.44  Aligned_cols=151  Identities=13%  Similarity=0.194  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------------HHH
Q 003779          449 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-----------------LVE  511 (796)
Q Consensus       449 IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-----------------~~~  511 (796)
                      |++|..|=-.++-.|++.++-++.+-.+-..=+...+++...|.+++.+++.-+.++++.                 +.+
T Consensus      1936 V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~ 2015 (3245)
T 3vkg_A         1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREE 2015 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Confidence            444444444444455555555555544444445555555555555555555444444332                 235


Q ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779          512 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  591 (796)
Q Consensus       512 le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda  591 (796)
                      |+.+.+|.+.|+..+.++.+..+.|..++..|+++...+....-+++.+++.....+.++.+=+..+..|+..=...++.
T Consensus      2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A         2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence            66677777777777777777777777777777777777777777777777777777777777777777777766666666


Q ss_pred             HHHHHHHH
Q 003779          592 LQEEKKMM  599 (796)
Q Consensus       592 LQEEKklL  599 (796)
                      |+++.+.|
T Consensus      2096 l~~~~~~L 2103 (3245)
T 3vkg_A         2096 FNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66655443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.02  E-value=0.0052  Score=65.64  Aligned_cols=49  Identities=20%  Similarity=0.220  Sum_probs=24.0

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003779          471 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  519 (796)
Q Consensus       471 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  519 (796)
                      ...+..++.+.+..|+....+..|+.++.+.++.++.+..+++..+.++
T Consensus       445 ~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~  493 (597)
T 3oja_B          445 GVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY  493 (597)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            3334466666666666666666666666666666666655555544433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.93  E-value=0.16  Score=49.61  Aligned_cols=156  Identities=19%  Similarity=0.211  Sum_probs=103.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003779          439 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  518 (796)
Q Consensus       439 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  518 (796)
                      ++-+..||.-|+||...=-+-..+.++.++..-.|......+       -..+.+|++.+-.|+....+-.-.+..|.+.
T Consensus         5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~-------E~~~rELq~~~~~L~~~k~~Leke~~~LQa~   77 (168)
T 3o0z_A            5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQL-------ESLNRELQERNRILENSKSQTDKDYYQLQAI   77 (168)
T ss_dssp             -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677888888887654444555666666655554444444       4444455555555555544444556777777


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 003779          519 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM  598 (796)
Q Consensus       519 rDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl  598 (796)
                      ++.=+..+..+.++.+.|..-|..|++++-++|..+-|+.-+...|.+.+...+++..+++         || |-=|+|.
T Consensus        78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e---------id-~~~eLKa  147 (168)
T 3o0z_A           78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE---------ID-LNYKLKS  147 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HH-HHHHHHH
Confidence            7777888899999999999999999999999999999988888888887777777666552         11 1135666


Q ss_pred             HHHHHHhhccCCC
Q 003779          599 MQSKLRKASGSGK  611 (796)
Q Consensus       599 LqSKLR~asa~gK  611 (796)
                      ||.++-+=...++
T Consensus       148 lQ~~~eqE~~~H~  160 (168)
T 3o0z_A          148 LQQRLEQEVNEHK  160 (168)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            6666665443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.79  E-value=0.018  Score=61.43  Aligned_cols=45  Identities=22%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 003779          483 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN  527 (796)
Q Consensus       483 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n  527 (796)
                      ...+....+++++.++.+|++++..+...+..+..+.++-+....
T Consensus       450 ~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~  494 (597)
T 3oja_B          450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR  494 (597)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence            334444577777788888888887777777777777777655544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.48  E-value=0.066  Score=63.57  Aligned_cols=37  Identities=16%  Similarity=0.085  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  551 (796)
Q Consensus       515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLR  551 (796)
                      ...+....+.+..+.++....+..|...||+++.++.
T Consensus       982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A          982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.33  E-value=0.095  Score=51.89  Aligned_cols=99  Identities=14%  Similarity=0.214  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779          503 EEIKVQLVELESFRNEYANVRLECNAADERAKILASE----VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  578 (796)
Q Consensus       503 ~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaE----VV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  578 (796)
                      .+|.-.......++.+|+.++.++++=.+-++.|-+|    +..+|.++..|++..-++..++       ++++.+|...
T Consensus        10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~-------e~~k~K~~~~   82 (189)
T 2v71_A           10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEV-------EALKEKLEHQ   82 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            3444444455566667777778888888888777655    4556666666655555555554       4444555444


Q ss_pred             HHh----hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003779          579 EKE----RQDFQSTIEALQEEKKMMQSKLRKASG  608 (796)
Q Consensus       579 ~kE----R~~l~stIdaLQEEKklLqSKLR~asa  608 (796)
                      .++    =..|+..|..|++++..|+.+||.+--
T Consensus        83 ~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq  116 (189)
T 2v71_A           83 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ  116 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444    446777888888999999999995543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.24  E-value=0.092  Score=62.38  Aligned_cols=69  Identities=16%  Similarity=0.228  Sum_probs=32.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          522 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       522 Aq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      ...|..++.++.+.|..|+..|++++.++...--.++...+.++   +....++..+++|-..|+..++.|.
T Consensus       975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555544332222222222222   2333555555555555555555544

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.45  E-value=0.74  Score=42.21  Aligned_cols=59  Identities=14%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779          543 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  601 (796)
Q Consensus       543 LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  601 (796)
                      .|+++-+|......++..+..+.............++.++..++..+..|.+....+..
T Consensus        67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A           67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555666666666666666666666666655543

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=95.43  E-value=0.81  Score=49.22  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hH-------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RS-------------------VVNQLKSEMEKLQEEIKVQLVELESFRN  517 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~-------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  517 (796)
                      .|..+...-..-++.+|..+..+......+ -.                   .-..++..+++++++++.+...|+..+.
T Consensus        78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk  157 (486)
T 3haj_A           78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK  157 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666777777666666322 11                   1344555677888888888888999999


Q ss_pred             HHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHH
Q 003779          518 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQ  560 (796)
Q Consensus       518 ErDaAq~E~naA~ERaK~L-------AaEVV~LEEk~lqLRS~eLKleKE  560 (796)
                      .|..+-.+...|..+.+..       ..++..++.++.+.+..--+++++
T Consensus       158 ~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~  207 (486)
T 3haj_A          158 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEK  207 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888887665543       245555555555444433333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.43  E-value=0.46  Score=42.27  Aligned_cols=97  Identities=18%  Similarity=0.270  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 003779          489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  568 (796)
Q Consensus       489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er  568 (796)
                      +-|..+|.+|..|+.+       .+.....++.+...+-.+..++..+-.||..|..++..+       +.+++.+....
T Consensus         2 ~~MdaIKkKm~~lk~e-------~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l-------E~eld~~ee~L   67 (101)
T 3u1c_A            2 GHMDAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT-------EDSRDQVLEEL   67 (101)
T ss_dssp             CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            4578888888666554       233344444444555555555555556666665555533       66777777777


Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 003779          569 SSYKKKISSLEKERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklL  599 (796)
                      ..+..++....+-+......+.+|+--..+|
T Consensus        68 ~ea~~kLee~ek~~~~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           68 HKSEDSLLFAEENAAKAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777776666777766555554

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=95.13  E-value=0.7  Score=46.07  Aligned_cols=75  Identities=15%  Similarity=0.121  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN  517 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  517 (796)
                      .|..+...-..-++.+|..+..+.+..+.+- ..+                   ..+...+++++.++..+...++..+.
T Consensus        85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~  164 (312)
T 3abh_A           85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK  164 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555666666666666666665332 222                   23444556666666666666777777


Q ss_pred             HHHHHHHhhhHHHHH
Q 003779          518 EYANVRLECNAADER  532 (796)
Q Consensus       518 ErDaAq~E~naA~ER  532 (796)
                      .|+.+-.+...|..+
T Consensus       165 ~Y~~~c~e~e~a~~~  179 (312)
T 3abh_A          165 AHHAACKEEKLAISR  179 (312)
T ss_dssp             HHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777766666665543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.66  E-value=0.88  Score=40.19  Aligned_cols=95  Identities=20%  Similarity=0.319  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  569 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~  569 (796)
                      .|..+|..|..|+.+       .+......+.+...+-.|..++..+-.||..|..++..+       +.+++.+.....
T Consensus         3 ~md~iKkKm~~lk~e-------~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l-------E~eld~~~e~l~   68 (101)
T 3u59_A            3 SMEAIKKKMQMLKLD-------KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT-------EDEVEKYSESVK   68 (101)
T ss_dssp             THHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            467788888555554       233333344444444445555555555555555555433       555666666666


Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 003779          570 SYKKKISSLEKERQDFQSTIEALQEEKKM  598 (796)
Q Consensus       570 S~~~q~ssi~kER~~l~stIdaLQEEKkl  598 (796)
                      .+..++....+.+......+.+|+--..+
T Consensus        69 ~a~~kLe~~ek~~~~AE~evasLnRriql   97 (101)
T 3u59_A           69 EAQEKLEQAEKKATDAEAEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666555555555544433

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=94.59  E-value=4.3  Score=40.86  Aligned_cols=129  Identities=16%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003779          459 LQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-------------------NQLKSEMEKLQEEIKVQLVELESFRNE  518 (796)
Q Consensus       459 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  518 (796)
                      |..+...-..-++.+|..+..+.+.+..+ ...+                   ..+...+++++.++..+...++..+..
T Consensus        77 l~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~  156 (337)
T 2x3v_A           77 LERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKA  156 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666677777777776666432 1222                   334445677888888888888988988


Q ss_pred             HHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 003779          519 YANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  591 (796)
Q Consensus       519 rDaAq~E~naA~ERaK~L-------AaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda  591 (796)
                      |+.+-.+...|..+....       ..++.-++.++.+++..--++..+-.........++..|..      .+...++.
T Consensus       157 Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~------~~~~~~~~  230 (337)
T 2x3v_A          157 YHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYME------GMEQVFEQ  230 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHH
Confidence            888888877765443322       24455555554444444444444333333333333333321      24455566


Q ss_pred             HH
Q 003779          592 LQ  593 (796)
Q Consensus       592 LQ  593 (796)
                      ||
T Consensus       231 ~Q  232 (337)
T 2x3v_A          231 CQ  232 (337)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=94.39  E-value=1.4  Score=45.00  Aligned_cols=130  Identities=15%  Similarity=0.163  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN  517 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  517 (796)
                      .|..+...-..-++.+|..+..+.+..+.+- ..+                   ..+...+++++.++..+...++..+.
T Consensus        85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk  164 (350)
T 3aco_A           85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK  164 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555666667777777766665432 111                   34555666677777777778888888


Q ss_pred             HHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 003779          518 EYANVRLECNAADERAKI-------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE  590 (796)
Q Consensus       518 ErDaAq~E~naA~ERaK~-------LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId  590 (796)
                      .|+.+-.+...|..+...       .+.|+.-++.++.+++..--++..+-.....+...++..|.      ..+...++
T Consensus       165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~------~~~~~~~~  238 (350)
T 3aco_A          165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM------ENMEQVFE  238 (350)
T ss_dssp             THHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence            888877777766654311       14666777777776666666665555554444444444443      23566667


Q ss_pred             HHH
Q 003779          591 ALQ  593 (796)
Q Consensus       591 aLQ  593 (796)
                      .||
T Consensus       239 ~~Q  241 (350)
T 3aco_A          239 QCQ  241 (350)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            666

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=94.30  E-value=0.54  Score=45.44  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=70.6

Q ss_pred             HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          473 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  552 (796)
Q Consensus       473 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS  552 (796)
                      +...|....+.-+.....+.+|+.++.+|+.+++...-.++.+..|+.+.+++++.+.++.+.|..|=..|=+|.++-+.
T Consensus        59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~  138 (152)
T 3a7p_A           59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE  138 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445566677778888889999999999999999999999999999999999999999999999999999999886544


Q ss_pred             H
Q 003779          553 N  553 (796)
Q Consensus       553 ~  553 (796)
                      .
T Consensus       139 q  139 (152)
T 3a7p_A          139 K  139 (152)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=94.06  E-value=7.1  Score=41.24  Aligned_cols=47  Identities=4%  Similarity=0.094  Sum_probs=37.4

Q ss_pred             cccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 003779          675 AVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNN  722 (796)
Q Consensus       675 ~~~Ip~DQlR~IdSInaLisELa~EReravsaLa~esr~~~dLk~lN~  722 (796)
                      |..+..|.++ .++|...|+.+..+=.++...+....+.+..|+....
T Consensus       294 ~~~~~~~e~~-~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~  340 (406)
T 4dyl_A          294 PGELQLNELT-VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELR  340 (406)
T ss_dssp             TTCCCCSTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666655 7899999999999999999998888888888776654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.93  E-value=0.4  Score=45.00  Aligned_cols=83  Identities=18%  Similarity=0.181  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 003779          515 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  594 (796)
Q Consensus       515 l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE  594 (796)
                      +-.++-+....+|-|+|-.+ +..+...|+.++..       ..+++..|++|+-++.-++..+.++-..++..++.||+
T Consensus        53 l~~~r~aVLaALNiadEl~k-~~~~~~~L~~~l~~-------~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~  124 (138)
T 3hnw_A           53 MSAELRTDMMYLNIADDYFK-AKKMADSLSLDIEN-------KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK  124 (138)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555566655443 33444555544443       37777788888888888888888888888899999999


Q ss_pred             HHHHHHHHHHh
Q 003779          595 EKKMMQSKLRK  605 (796)
Q Consensus       595 EKklLqSKLR~  605 (796)
                      ++.-|++.|..
T Consensus       125 ~~~~le~~~~~  135 (138)
T 3hnw_A          125 NIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.81  E-value=0.46  Score=41.83  Aligned_cols=66  Identities=17%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003779          542 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  607 (796)
Q Consensus       542 ~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as  607 (796)
                      .||.||.++=-.=--++-+++.|+.+-..+..+...+...|..+...++.|++|...-+.|||.+.
T Consensus        10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666655333333455666677777777778888888888999999999999999999999754

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=93.39  E-value=6.4  Score=38.52  Aligned_cols=77  Identities=13%  Similarity=0.141  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  525 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E  525 (796)
                      .+.++...-..-++.+|..+..+.+.++.+ ...+           ...+..+++++.++..+...++..+..|+.+-.+
T Consensus        66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e  145 (301)
T 2efk_A           66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE  145 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555566666666666666322 3333           3444555666666666666777777777777666


Q ss_pred             hhHHHHHHH
Q 003779          526 CNAADERAK  534 (796)
Q Consensus       526 ~naA~ERaK  534 (796)
                      ...|.....
T Consensus       146 ~e~a~~~~~  154 (301)
T 2efk_A          146 AEKAAQTAE  154 (301)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655543

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=93.04  E-value=0.75  Score=40.63  Aligned_cols=71  Identities=14%  Similarity=0.252  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003779          531 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  603 (796)
Q Consensus       531 ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL  603 (796)
                      ++.+.|.++--.||.++..++...-  .+.-.-+..++..+++++..+..|+..+...|+.|+++...+..||
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL   93 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3444444444455555555543321  2222347788999999999999999999999999999999988875

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=92.56  E-value=5.3  Score=38.62  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003779          467 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE  503 (796)
Q Consensus       467 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~  503 (796)
                      ...++.+|..+..+.+..|+-...+..+..++++.+.
T Consensus        79 ~~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK  115 (276)
T 2v0o_A           79 KTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHK  115 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777777776555555555555554433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=92.36  E-value=3.5  Score=36.56  Aligned_cols=75  Identities=20%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          514 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       514 ~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      .++.|-..+..++.+...--..|..|+..|+.++.+|.-.+-+       +-.+.+.+..++-..+.||++|..-++-.|
T Consensus        15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~-------~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~   87 (96)
T 3q8t_A           15 ELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ-------YQREYSEFKRQQLELDDELKSVENQMRYAQ   87 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444556666666666655444433       333344445555555555555444444444


Q ss_pred             HH
Q 003779          594 EE  595 (796)
Q Consensus       594 EE  595 (796)
                      -.
T Consensus        88 ~q   89 (96)
T 3q8t_A           88 MQ   89 (96)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.35  E-value=3.6  Score=43.38  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=41.2

Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003779          430 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN  485 (796)
Q Consensus       430 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yN  485 (796)
                      ...|+++... ++..+++....+.++|..|...+.+.++.-+....+......++.
T Consensus       344 L~gyC~s~~~-~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e  398 (487)
T 3oja_A          344 LKEQYRTVID-QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE  398 (487)
T ss_dssp             HHHHTCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence            4456665544 788888888889999999988888888777777776666655555

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.89  E-value=11  Score=37.48  Aligned_cols=63  Identities=14%  Similarity=0.203  Sum_probs=21.8

Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccc
Q 003779          569 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITD  636 (796)
Q Consensus       569 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTsTdDLai~d  636 (796)
                      +.+.++.+.+..=-.++.+-++..=|...+|++=|..     |..--.+...++-++.-...+|.|..
T Consensus       119 DdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-----Ke~l~~~~QRLkdE~rDLk~El~v~~  181 (189)
T 2v71_A          119 DDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-----KESLLVSVQRLKDEARDLRQELAVRE  181 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCC------------------
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444444555666666666666666666652     11011223334445555555555533

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.82  E-value=3.2  Score=37.65  Aligned_cols=89  Identities=22%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  569 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~  569 (796)
                      ..+.|+.++.+|+.++..--.++..+..++...+..+..|..+.+.+..||..|-.-+..                    
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe--------------------   65 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD--------------------   65 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            345556666666665555555555566666666666666666666666666666554441                    


Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 003779          570 SYKKKISSLEKERQDFQSTIEALQEEKKM  598 (796)
Q Consensus       570 S~~~q~ssi~kER~~l~stIdaLQEEKkl  598 (796)
                      .+.+-|....++|..+..-++.|+++++-
T Consensus        66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           66 EANNMVADARKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22333444456666677777777776653

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.61  E-value=1.2  Score=41.86  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=24.6

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003779          482 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE  544 (796)
Q Consensus       482 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LE  544 (796)
                      +.|-........|..+++.+..|+..---.|..+..+.+.+..+..+..++...|..+++.||
T Consensus        68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444443333333333333333333333333333333333333333

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=91.59  E-value=11  Score=36.82  Aligned_cols=46  Identities=17%  Similarity=0.099  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 003779          490 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  535 (796)
Q Consensus       490 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~  535 (796)
                      ....++..+.+++.++..+...++..+..|+.+-.++..|......
T Consensus       117 ~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~  162 (305)
T 2efl_A          117 ERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEK  162 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666777777777777777777777777766665443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=91.09  E-value=1.6  Score=37.26  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003779          565 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  605 (796)
Q Consensus       565 ~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~  605 (796)
                      -.|+.++.++++       .+...+|+.++....++.+|..
T Consensus        40 E~ev~~L~kKiq-------~lE~eld~~ee~l~~a~~kLee   73 (81)
T 1ic2_A           40 EDELVALQKKLK-------GTEDELDKYSESLKDAQEKLEL   73 (81)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666       3445666666777777777764

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=90.35  E-value=0.2  Score=55.70  Aligned_cols=76  Identities=18%  Similarity=0.160  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          529 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       529 A~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      |.+-+..|+.+...+|+...+|+....+..++-+.|..++..+..++..+..++..=-.+-..||+|...++..++
T Consensus       375 ~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~  450 (575)
T 2i1j_A          375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQD  450 (575)
T ss_dssp             -------------------------------------------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444555555555555555555445544555555555555555544444444444455555555555444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=90.26  E-value=5.2  Score=35.50  Aligned_cols=91  Identities=21%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 003779          489 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  568 (796)
Q Consensus       489 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er  568 (796)
                      ..+.+|+.++..|+.+=..-+..|..+-.|++..-.++.+...-++.|-.+=...-.       ..=....++-.+..|+
T Consensus         4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~-------eyn~~~~ql~e~~dE~   76 (96)
T 3q8t_A            4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR-------EYSEFKRQQLELDDEL   76 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            345667777777777666666666666666666555555444444444333332222       2333345555677777


Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHH
Q 003779          569 SSYKKKISSLEKERQDFQSTIEALQ  593 (796)
Q Consensus       569 ~S~~~q~ssi~kER~~l~stIdaLQ  593 (796)
                      +|+..+|.       ..+.-+++|+
T Consensus        77 ~Sl~~q~~-------~~~~qLdkL~   94 (96)
T 3q8t_A           77 KSVENQMR-------YAQMQLDKLK   94 (96)
T ss_dssp             HHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHH-------HHHHHHHHhh
Confidence            77777776       3344555554

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.76  E-value=15  Score=35.50  Aligned_cols=86  Identities=15%  Similarity=0.178  Sum_probs=37.2

Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 003779          513 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  592 (796)
Q Consensus       513 e~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL  592 (796)
                      ..+..++...+..+.+|-.+.+.+..||..|-.-++.-=      -+=+...+-++..++.+..-+.+.=.+....|+.|
T Consensus        61 ~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEA------N~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l  134 (154)
T 2ocy_A           61 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA------NNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL  134 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445555555556666655554443210      01111122222233333333333333444566666


Q ss_pred             HHHHHHHHHHHH
Q 003779          593 QEEKKMMQSKLR  604 (796)
Q Consensus       593 QEEKklLqSKLR  604 (796)
                      |+++..|..-+-
T Consensus       135 q~ql~~LK~v~~  146 (154)
T 2ocy_A          135 TLQLKNLKKVMH  146 (154)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHH
Confidence            666666654433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=89.66  E-value=15  Score=35.38  Aligned_cols=29  Identities=14%  Similarity=0.193  Sum_probs=12.6

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003779          520 ANVRLECNAADERAKILASEVIGLEEKAL  548 (796)
Q Consensus       520 DaAq~E~naA~ERaK~LAaEVV~LEEk~l  548 (796)
                      ..|-..+..|--....|..++..||+++.
T Consensus        87 KEAE~RAE~AERsv~kLEk~id~lEd~L~  115 (155)
T 2efr_A           87 KEAETRAEFAERSVTKLEKSIDDLEDELY  115 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=89.55  E-value=1  Score=41.79  Aligned_cols=61  Identities=25%  Similarity=0.224  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 003779          497 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE  567 (796)
Q Consensus       497 ~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~E  567 (796)
                      .+++|+.||......++.|+.|...+..          .|-..|..||.++..-|..--++.-|.+.|+.|
T Consensus        16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~----------ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e   76 (120)
T 3i00_A           16 LIERLYREISGLKAQLENMKTESQRVVL----------QLKGHVSELEADLAEQQHLRQQAADDCEFLRAE   76 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666655555556667666544322          233445555555554443333333333334433

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=89.35  E-value=1.6  Score=38.62  Aligned_cols=57  Identities=26%  Similarity=0.348  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHH---HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          496 SEMEKLQEEIKVQLV---ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  552 (796)
Q Consensus       496 ~~mE~Lq~Ei~aQ~~---~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS  552 (796)
                      ..-..|+.||++..+   +|..+++.--+++-++.+|..|++.|..||..|++++..||+
T Consensus        14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~   73 (81)
T 1wt6_A           14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            334456778887765   456668888888999999999999999999999999988764

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=89.29  E-value=5.5  Score=36.89  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 003779          517 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  596 (796)
Q Consensus       517 aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  596 (796)
                      .|++.....++.|.+-...-+.++..|.+++.+++-..    -+++=|+..++-|+.-..+=-.+|..++.+++.|++++
T Consensus        24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql   99 (110)
T 2v4h_A           24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL   99 (110)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence            35666666667777777777777777777776632111    12334666666666666666677888999999999999


Q ss_pred             HHHHHHHHh
Q 003779          597 KMMQSKLRK  605 (796)
Q Consensus       597 klLqSKLR~  605 (796)
                      ..||..+.+
T Consensus       100 ~~Lq~q~~~  108 (110)
T 2v4h_A          100 EQLQREFNK  108 (110)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999887653

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=88.77  E-value=2.8  Score=42.68  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN  517 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  517 (796)
                      .|..++..-..-++.+|..+..+.+++..+- ..+                   ..+...+++++..+..+...|+..+.
T Consensus        76 sl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk  155 (320)
T 3m3w_A           76 TLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKK  155 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555556666666666666554421 111                   22223444555555555555665565


Q ss_pred             HHHHHHHh
Q 003779          518 EYANVRLE  525 (796)
Q Consensus       518 ErDaAq~E  525 (796)
                      .|+.+-.+
T Consensus       156 ~Y~~~c~e  163 (320)
T 3m3w_A          156 SYHTARKD  163 (320)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554444

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=88.51  E-value=6  Score=36.59  Aligned_cols=101  Identities=12%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 003779          488 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE  567 (796)
Q Consensus       488 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~E  567 (796)
                      ...++.|+....+|+.++...       ++|++-..-..+   +....-..+|-.|.+++..-=+.-..+++....+   
T Consensus         5 ~~~~~~lq~~~~ql~~qL~k~-------~~~r~~Le~~w~---~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~---   71 (112)
T 1x79_B            5 RDQVKKLQLMLRQANDQLEKT-------MKDKQELEDFIK---QSSEDSSHQISALVLRAQASEILLEELQQGLSQA---   71 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            456677777776666653332       222222222223   2333456788888887775433333333333333   


Q ss_pred             HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779          568 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  601 (796)
Q Consensus       568 r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  601 (796)
                      .+.+..++.-|+.+|..|...|.+||.|-.-|.-
T Consensus        72 q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G  105 (112)
T 1x79_B           72 KRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG  105 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence            3667778888999999999999999988765543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=88.47  E-value=7  Score=34.44  Aligned_cols=39  Identities=15%  Similarity=0.207  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003779          466 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  504 (796)
Q Consensus       466 s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  504 (796)
                      +.+-++++-.+.-.+-++..+-...|..|+..+..|+.+
T Consensus        21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e   59 (101)
T 3u59_A           21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE   59 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444455544444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.88  E-value=18  Score=38.14  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=11.0

Q ss_pred             eeEeecCCCCCCCCCccccccccC
Q 003779           41 RVRVTDLDGAGTSDGPDKAVVSLP   64 (796)
Q Consensus        41 ~vr~~d~dgag~sdg~~~~v~~~~   64 (796)
                      .++..|..|-++.+-+..++..+|
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~   58 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFT   58 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCT
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCC
Confidence            345555555555443333344433

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=86.65  E-value=12  Score=36.82  Aligned_cols=134  Identities=14%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 003779          457 FALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV------------------NQLKSEMEKLQEEIKVQLVELESFRN  517 (796)
Q Consensus       457 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  517 (796)
                      ..|..+...-..-++.+|..+..+.+.+..+ ...+                  ..+...+++++..+..+...++..+.
T Consensus        63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk  142 (290)
T 3i2w_A           63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKA  142 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556555566667777777776666332 1222                  34445566777777888888888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh----HHHHHHHHH
Q 003779          518 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD----FQSTIEALQ  593 (796)
Q Consensus       518 ErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~----l~stIdaLQ  593 (796)
                      .|+.+-.+...|..+..........-..++.+++...-|+...++..+   ..|...+..+.+.|.+    +-..++.||
T Consensus       143 ~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q  219 (290)
T 3i2w_A          143 DYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCR---EKYEQAIAEITKYNSVYIEDMTSVFEKCQ  219 (290)
T ss_dssp             HHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            888877776666544332111111112333334333333333333333   4444444444444443    334556666

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=85.67  E-value=6.1  Score=34.40  Aligned_cols=20  Identities=35%  Similarity=0.549  Sum_probs=13.4

Q ss_pred             HhhhhHHHHHHHHHHHHHHH
Q 003779          580 KERQDFQSTIEALQEEKKMM  599 (796)
Q Consensus       580 kER~~l~stIdaLQEEKklL  599 (796)
                      --|-+|..-|+.|++|..-|
T Consensus        63 l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A           63 LARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34556777777888877554

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=84.94  E-value=23  Score=32.37  Aligned_cols=28  Identities=29%  Similarity=0.349  Sum_probs=22.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          525 ECNAADERAKILASEVIGLEEKALRLRS  552 (796)
Q Consensus       525 E~naA~ERaK~LAaEVV~LEEk~lqLRS  552 (796)
                      -|.+|.+|...|.+.-+.||.++..+-+
T Consensus        63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~   90 (129)
T 2fxo_A           63 NLADAEERCDQLIKNKIQLEAKVKEMNK   90 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888888888888888888887743

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=83.90  E-value=23  Score=31.46  Aligned_cols=62  Identities=13%  Similarity=0.102  Sum_probs=31.6

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Q 003779          468 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA  529 (796)
Q Consensus       468 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA  529 (796)
                      +=++.|-.|.+...+++.+--..+.++....+++++||.+-.-.+..+..|+|.++..+..|
T Consensus         9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea   70 (101)
T 3u1c_A            9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS   70 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555554444444445555444444433

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=83.57  E-value=26  Score=31.80  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--hhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003779          448 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ--QRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  523 (796)
Q Consensus       448 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq--Q~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq  523 (796)
                      ||+=| ++.-...+-|..++...+.+..+-..|.+++.+  +..  ...+-...|+.|++||.....+|..|+..++...
T Consensus         3 Hi~LL-RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~   81 (107)
T 2no2_A            3 HADLL-RKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA   81 (107)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45433 234445555666666666666666666666655  111  1222334455566666666666666777777766


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHH
Q 003779          524 LECNAADERAKILASEVIGLEE  545 (796)
Q Consensus       524 ~E~naA~ERaK~LAaEVV~LEE  545 (796)
                      ++--.-..+...|.+|...|+.
T Consensus        82 ~~~~~l~~~~~~l~~Ek~~L~~  103 (107)
T 2no2_A           82 QSEANWAAEFAELEKERDSLVS  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666666666666666554

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.16  E-value=16  Score=31.12  Aligned_cols=77  Identities=22%  Similarity=0.343  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 003779          492 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  571 (796)
Q Consensus       492 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~  571 (796)
                      ..++..|-.|+.+       .+......+.+...+..+..++..+-.||..|..++..+       +-+++.+...+..+
T Consensus         2 ~~ikkKm~~lk~e-------~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l-------E~eld~~ee~l~~a   67 (81)
T 1ic2_A            2 DAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT-------EDELDKYSESLKDA   67 (81)
T ss_dssp             CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            4577777666654       344445555555566666666666667777776666654       66666777666666


Q ss_pred             HHHHHhHHHhh
Q 003779          572 KKKISSLEKER  582 (796)
Q Consensus       572 ~~q~ssi~kER  582 (796)
                      ..++....+-+
T Consensus        68 ~~kLeeaek~~   78 (81)
T 1ic2_A           68 QEKLELADKKA   78 (81)
T ss_dssp             HHHHHHHGGGC
T ss_pred             HHHHHHHHHHh
Confidence            66666554443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.35  E-value=23  Score=32.23  Aligned_cols=63  Identities=16%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  552 (796)
Q Consensus       487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS  552 (796)
                      -...+.+|++.+..|+-||..+..-.+++..-..-+...+..+   .+.++.-+..||+++.++|.
T Consensus        34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~   96 (129)
T 3tnu_B           34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLAELEEALQKAKQ   96 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHH
Confidence            3455667777777777776666555555543333333333222   22333444455555554443

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=82.31  E-value=20  Score=40.09  Aligned_cols=98  Identities=17%  Similarity=0.336  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 003779          494 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  573 (796)
Q Consensus       494 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~  573 (796)
                      -+.++..+|.|++.=..+.+..+++|+.+..+..+..++   +.+|-+.+..+.-..+   -+-+.+|+++..++..|++
T Consensus         7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~---i~aeNeaikkrNa~ak---a~Ye~~l~kY~~dlakY~~   80 (497)
T 3iox_A            7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAA---LTAENTAIKKRNADAK---ADYEAKLAKYQADLAKYQK   80 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            344555555555555556666666666666555543333   4445544444443331   1223344455555544444


Q ss_pred             HHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          574 KISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       574 q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      ++-       +-+..+.+-|+|++.-+..|-
T Consensus        81 ~~A-------eY~~kl~aYe~~~~~~~k~la  104 (497)
T 3iox_A           81 DLA-------DYPVKLKAYEDEQTSIKAALA  104 (497)
T ss_dssp             HHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            422       333445555555554444444

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=81.96  E-value=4.5  Score=45.08  Aligned_cols=99  Identities=16%  Similarity=0.178  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHH
Q 003779          493 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK  572 (796)
Q Consensus       493 qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~  572 (796)
                      +++.++|+-+.|+..   .|..+.+|...|+.++..+.+.+..|+.+.-.+|++...|-...-.++.+.++|..+.....
T Consensus       328 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~  404 (575)
T 2i1j_A          328 AARERAEKKQQEYQD---RLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEA  404 (575)
T ss_dssp             CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred             HHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            445555555555443   34566778888888888888888888888888888888776666666666666555444444


Q ss_pred             HHHHhHHHhhhhHHHHHHHHHH
Q 003779          573 KKISSLEKERQDFQSTIEALQE  594 (796)
Q Consensus       573 ~q~ssi~kER~~l~stIdaLQE  594 (796)
                      .+-..++.+.......+.+|.+
T Consensus       405 ~e~~~l~~~~~~~~~~~~~~~~  426 (575)
T 2i1j_A          405 AERQKLEDEIRAKQEEVSRIQQ  426 (575)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444445555443

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=81.89  E-value=60  Score=34.92  Aligned_cols=13  Identities=15%  Similarity=0.294  Sum_probs=9.5

Q ss_pred             hhHHHHHHHHHHH
Q 003779          440 EDFAALEQHIEDL  452 (796)
Q Consensus       440 ~~faaLqqhIeDL  452 (796)
                      ..|..|-+|+++-
T Consensus        22 ~G~~~L~~r~~~g   34 (486)
T 3haj_A           22 GNYKRTVKRIDDG   34 (486)
T ss_dssp             TTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            6788888777653

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=81.54  E-value=2  Score=39.10  Aligned_cols=75  Identities=23%  Similarity=0.318  Sum_probs=55.0

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003779          482 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES--FRNEYANVR-----LECNAADERAKILASEVIGLEEKALRLRSNE  554 (796)
Q Consensus       482 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~--l~aErDaAq-----~E~naA~ERaK~LAaEVV~LEEk~lqLRS~e  554 (796)
                      +.||.-+..|..|..+.++|+++++...+.|+.  ++.+|+...     .--|=|.+--+....+|..|+.+|-+||.--
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v   91 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL   91 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999888888877  567776632     2233344444445688888888888887544


Q ss_pred             hh
Q 003779          555 LK  556 (796)
Q Consensus       555 LK  556 (796)
                      -+
T Consensus        92 ~~   93 (100)
T 1go4_E           92 RA   93 (100)
T ss_dssp             TT
T ss_pred             HH
Confidence            43

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.44  E-value=43  Score=32.89  Aligned_cols=41  Identities=22%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 003779          560 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ  600 (796)
Q Consensus       560 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLq  600 (796)
                      .+..|..|+++.+..++.+..|+..++.-|..|.-|+..+.
T Consensus        98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34446777777777777777777777777777777776666

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.80  E-value=42  Score=32.44  Aligned_cols=117  Identities=18%  Similarity=0.258  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003779          477 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES---FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN  553 (796)
Q Consensus       477 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~---l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~  553 (796)
                      |..|..-||.|..    |.+.+-+++.++..+...+..   ++.+++.       +..+.+..-.|+..|.+++.+.|..
T Consensus         5 StKLI~Ain~qs~----LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~-------l~~~~~~~~~e~~~L~~~l~~E~~~   73 (154)
T 2ocy_A            5 STQLIESVDKQSH----LEEQLNKSLKTIASQKAAIENYNQLKEDYNT-------LKRELSDRDDEVKRLREDIAKENEL   73 (154)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            3456666776653    455555555555544444333   3444443       3344556777777777777777777


Q ss_pred             hhhhHHHhhhhHHHHHHH--------HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003779          554 ELKLERQLENSQSEISSY--------KKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  604 (796)
Q Consensus       554 eLKleKElE~l~~Er~S~--------~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  604 (796)
                      ...++++...+..|++-+        .+-|....++|..+..-++.|++..+....+|.
T Consensus        74 R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~  132 (154)
T 2ocy_A           74 RTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD  132 (154)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776666666666543        444566778888899888889887766666555

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.37  E-value=27  Score=31.75  Aligned_cols=100  Identities=15%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 003779          480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  559 (796)
Q Consensus       480 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleK  559 (796)
                      |.......+..+..-|.++-.|++.|+.-..++++++.-.++....+.++..|   ...++..+..++..       ++.
T Consensus        20 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~-------lE~   89 (129)
T 3tnu_B           20 LQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAE-------LEE   89 (129)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHH
Confidence            33344455556666677777777776666666666655554433333333322   23444444444443       356


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHH
Q 003779          560 QLENSQSEISSYKKKISSLEKERQDFQSTI  589 (796)
Q Consensus       560 ElE~l~~Er~S~~~q~ssi~kER~~l~stI  589 (796)
                      ++..++.++.+.-++|+.++--.-.|--+|
T Consensus        90 eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI  119 (129)
T 3tnu_B           90 ALQKAKQDMARLLREYQELMNTKLALDVEI  119 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666665554444443333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.13  E-value=22  Score=32.47  Aligned_cols=63  Identities=21%  Similarity=0.263  Sum_probs=28.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003779          487 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  552 (796)
Q Consensus       487 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS  552 (796)
                      -...+.+|+..+..|+-||+.+..-.+++..-..-+...+..+.   +.++.-+..||.++.++|.
T Consensus        36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l---~~~q~~i~~lE~eL~~~r~   98 (131)
T 3tnu_A           36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQL---AQIQEMIGSVEEQLAQLRC   98 (131)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            34456666677777776666655555444333333333222222   2333344445555554443

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=80.02  E-value=11  Score=33.67  Aligned_cols=50  Identities=24%  Similarity=0.243  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 003779          528 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  578 (796)
Q Consensus       528 aA~ERaK~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  578 (796)
                      |+.=|.|.+ .+...||.+...|..+--++.+|+..+..|++.|+.+|+.+
T Consensus        39 Aq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L   88 (90)
T 2wt7_B           39 AQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456688888 57789999999888888888888888888888888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	796
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	95.49
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.37
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.07
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	86.56
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	84.37
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	83.54
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	81.34
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	81.28

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.78  Score=41.26  Aligned_cols=86  Identities=14%  Similarity=0.147  Sum_probs=57.8

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 003779          480 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  559 (796)
Q Consensus       480 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eLKleK  559 (796)
                      |..-..++......++.++.+++.++......++..+..|+.+..+...|......+......-..++.+++...-+...
T Consensus        93 l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~  172 (279)
T d2efka1          93 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSH  172 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            33344455666777788888888998888889999999999998888888877666654433334444444444444444


Q ss_pred             HhhhhH
Q 003779          560 QLENSQ  565 (796)
Q Consensus       560 ElE~l~  565 (796)
                      ++++++
T Consensus       173 ~~~~~~  178 (279)
T d2efka1         173 MAEESK  178 (279)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=1.7  Score=39.03  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 003779          495 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  533 (796)
Q Consensus       495 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERa  533 (796)
                      ..++.+++.++......++..+..|..+..++..|....
T Consensus       117 ~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~  155 (288)
T d2efla1         117 FHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYF  155 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444333

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=2  Score=38.60  Aligned_cols=91  Identities=9%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 003779          458 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA  537 (796)
Q Consensus       458 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~naA~ERaK~LA  537 (796)
                      .+.++...-..-++.+|..+..+....+.+  ++..|+.-++.+++.++........+..++.....++.++..+-....
T Consensus        68 ~~~~~~~~~~~~~~~~a~~h~~~a~~l~~~--i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~  145 (288)
T d2efla1          68 TSCKAFISNLNEMNDYAGQHEVISENMASQ--IIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDC  145 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666777888888888877653  445555555555555555555666777788888888888888887778


Q ss_pred             HHHHHHHHHHHHH
Q 003779          538 SEVIGLEEKALRL  550 (796)
Q Consensus       538 aEVV~LEEk~lqL  550 (796)
                      .|+..+..++.++
T Consensus       146 ~e~e~~~~~~~~~  158 (288)
T d2efla1         146 KEADRAQQYFEKM  158 (288)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh
Confidence            8887777766654

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=10  Score=34.01  Aligned_cols=20  Identities=10%  Similarity=0.182  Sum_probs=11.7

Q ss_pred             HHHHHhhhHHHHHHHHhhHH
Q 003779          471 ESLAAENSSLTDSYNQQRSV  490 (796)
Q Consensus       471 EsLa~ENsaLt~~yNqQ~~~  490 (796)
                      ..+..+...+...|++....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~k  170 (300)
T d1f5na1         151 RLFVQKLQDLKKKYYEEPRK  170 (300)
T ss_dssp             HHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            34455556667777766543

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.37  E-value=8.2  Score=30.55  Aligned_cols=68  Identities=10%  Similarity=0.076  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 003779          534 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  601 (796)
Q Consensus       534 K~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  601 (796)
                      ..+......+...+..+....-.+...+..+..++..+..++..+......+...++.+.+..+.+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  179 (185)
T d2ap3a1         112 KEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQK  179 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444433334444444455555556666666666666666666665555554443

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.54  E-value=9  Score=30.32  Aligned_cols=34  Identities=9%  Similarity=0.202  Sum_probs=15.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003779          440 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL  473 (796)
Q Consensus       440 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsL  473 (796)
                      .+...|+..++.+-...-.+.....+-..+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~e~~~   38 (185)
T d2ap3a1           5 KEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKK   38 (185)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556566555554444444444333333333

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.34  E-value=14  Score=31.12  Aligned_cols=157  Identities=13%  Similarity=0.050  Sum_probs=67.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH-------HHHHHH---HHHHHHHHHHHH
Q 003779          438 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS-------VVNQLK---SEMEKLQEEIKV  507 (796)
Q Consensus       438 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~-------~v~qLk---~~mE~Lq~Ei~a  507 (796)
                      .|.+|....+.+.++-+.=-.|++....-..-...|......+...++..+.       .+..+.   +.|+.....+..
T Consensus         4 ~D~e~e~~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   83 (200)
T d1i4da_           4 VDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLG   83 (200)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666654444445555555444555555555555555444432       222222   233332222211


Q ss_pred             H-HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 003779          508 Q-LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL--KLERQLENSQSEISSYKKKISSLEKERQD  584 (796)
Q Consensus       508 Q-~~~le~l~aErDaAq~E~naA~ERaK~LAaEVV~LEEk~lqLRS~eL--KleKElE~l~~Er~S~~~q~ssi~kER~~  584 (796)
                      . ...+..+...+..+..+..++..+-...-.+....-.++.+++...-  +....++.+..+...++.++..+   +.+
T Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~~~~~~kl~~ae~~~~~a~~~fe~~---~~~  160 (200)
T d1i4da_          84 AVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKL---RGD  160 (200)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHH---HHH
Confidence            1 11112222233333333333333332223333333333332221111  11123555666666666666654   667


Q ss_pred             HHHHHHHHHHHHH
Q 003779          585 FQSTIEALQEEKK  597 (796)
Q Consensus       585 l~stIdaLQEEKk  597 (796)
                      +...|+.|++.+.
T Consensus       161 ~~~~l~~l~~~r~  173 (200)
T d1i4da_         161 VAIKLKFLEENKI  173 (200)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhH
Confidence            8888888887654

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.28  E-value=17  Score=32.04  Aligned_cols=43  Identities=12%  Similarity=-0.016  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 003779          534 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  576 (796)
Q Consensus       534 K~LAaEVV~LEEk~lqLRS~eLKleKElE~l~~Er~S~~~q~s  576 (796)
                      |.+..++-.++.++....+.-.|+.+.......+.+++..++.
T Consensus       105 k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~  147 (279)
T d2efka1         105 KMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAE  147 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444333333333333333333