Citrus Sinensis ID: 003798

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790----

MAWSSILYKRLNTSRVGESRARSRRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQVLRGQGPPKLAVIC

ccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEEEccccccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccccccHHHHHHHHccccccEEEEEEcccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccHHHHHHHcccccccEEEEEEEEccccccccccccccc

ccccccEEcccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccHHccccccccccccccEEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEEEEcccccccEEEHccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEccccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHcccccEEEEEccccccccHHcccHcHHHcccccccHHHcccccccccEEEEEEEEEEccccccccccccc

MAWSSIlykrlntsrvgesrarsrrshplgiffgespldspfLLVLFEIVFIICTTSIIRFLlkplkqprvisemiggiivgpsilgrNKKFaeamlpdnsqlVVRSVGIMAFMYFMFIAGIKMDFTLlkrcgrkhVYIAVTGVIIPTATSAAVAFLTRksmdpelakvssigaittslavtsfpvlnPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAakqgegdsvDAVWYLISLVILLAFICIAVRRTMLWIvhktpvgkpvsqGYIVGILLGVLVMGFLTDMFGMAIAngplwlglvipdgpplgaTLVERTETLIMEIFMPFAFAVVGMYTDVYAMfefgwsglsplfGMIVTGYISKLLGTLIpsllcqmpfrdsLTLSLMMSLRGQVELLLYIHWIDKliigvppfTLLVLSTVVITGiagplisflydptrpymvnkrrtiqhhppdteLRLVVCVHEEESVAGLINLLEvscptvdspfsiYSLHLIELIGRgipllvdyeneehspeytnddAIHNALKLYSETrgelkfnaftalapMRSMYQNICELALdnkatliilpfhkeypnnlegtqILRRGVQSVNIkvlshapcsvgvlvdkgnfrnpmhaaggsmrrHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLsfnhegddeMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLegleawsednelgvIGDYVASIDFGSTASVLVMQQQVlrgqgppklavic

mawssilykrlntsrvgesrarsrrshpLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKtpvgkpvsqGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHspeytnddaIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWvknesnervryrevvVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQqvlrgqgppklavic

MAWSSILYKRLNTSRVGESRARSRRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKnesnervryrevvvrnGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQVLRGQGPPKLAVIC

****************************LGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEE***EYTNDDAIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQVL************

****SILYKRLNTSRVGESRARSRRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTR********************LVVCVHEEESVAGLINLLEV*****DSPFSIYSLHLIELIGRGI**********************NALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFH****************VQSVNIKVLSHAPCSVGVLVDKGNF***********RRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFN*********KLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGI***********SEDNELGVIGDYVASIDFGSTASVLVMQQQV*************

MAWSSILYKRLN************RSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQVLRGQGPPKLAVIC

*AWSSILYKRLNTSRVGESRARSRRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDKGNFR********SMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQVLRGQGPPKL***C

ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		794	2.2.26 [Sep-21-2011]
Q9FGH6		857	Cation/H(+) antiporter 25	yes	no	0.984	0.912	0.470	0.0
Q1HDT2		859	Cation/H(+) antiporter 24	no	no	0.957	0.884	0.482	0.0
Q9SIT5		821	Cation/H(+) antiporter 15	no	no	0.934	0.903	0.359	1e-134
Q9FFB8		822	Cation/H(+) antiporter 3	no	no	0.918	0.886	0.313	1e-106
Q9LMJ1		829	Cation/H(+) antiporter 14	no	no	0.935	0.896	0.313	1e-106
Q9FYC1		817	Cation/H(+) antiporter 4	no	no	0.913	0.887	0.307	1e-102
Q8VYD4		867	Cation/H(+) antiporter 23	no	no	0.887	0.813	0.316	2e-98
Q9LUN4		800	Cation/H(+) antiporter 19	no	no	0.924	0.917	0.319	2e-98
O22920		831	Cation/H(+) symporter 13	no	no	0.937	0.895	0.312	2e-98
Q9FFR9		810	Cation/H(+) antiporter 18	no	no	0.928	0.909	0.319	2e-95

>sp\|Q9FGH6\|CHX25_ARATH Cation/H(+) antiporter 25 OS=Arabidopsis thaliana GN=CHX25 PE=2 SV=1	Back alignment and function desciption

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/809 (47%), Positives = 531/809 (65%), Gaps = 27/809 (3%)

Query: 4   SSILYKRLNTSRVGESRARSRRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLL 63
           + ++  R+ ++R+ E   +     P G+F GE+ ++  F   L E + II    I+  LL
Sbjct: 27  AGVVSSRVFSARLPEVCRQVHDKQPFGMFKGENGMNYTFSTFLIEAILIIFFIKIVYVLL 86

Query: 64  KPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIK 123
           +PL+QPR++ E+IGG+++GPS+LGRN+ F   + P  +  +  ++G+M F YF F+   K
Sbjct: 87  RPLRQPRIVCEIIGGMMIGPSMLGRNRNFNYYLFPPIANYICANIGLMGFFYFFFLTAAK 146

Query: 124 MDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTS 183
            D   + +  RKH YIA   V++P A   +     +  MD  L K SSIG +T +L  TS
Sbjct: 147 TDVAEIFKAPRKHKYIAAVSVLVPIACVGSTGAALKHKMDIRLQKPSSIGGVTFALGFTS 206

Query: 184 FPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQ--GEGDSVDAVWYLI 241
           FPV+  +L+D+NLL+SE+G+ A+   ++GD +G+ +++ FEA  Q  G G +   +W+LI
Sbjct: 207 FPVIYTVLRDMNLLNSEIGKFAMSVTLLGDMVGVYVLVLFEAMAQADGGGGAYSVIWFLI 266

Query: 242 SLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGP 301
           S  I+ A + + V+R+  WIV KTP G  V+Q YIV IL+GVLV  FLTDMFGMAIA GP
Sbjct: 267 SAAIMAACLLLVVKRSFEWIVAKTPEGGLVNQNYIVNILMGVLVSCFLTDMFGMAIAVGP 326

Query: 302 LWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGW-SGLSPLFG 360
           +WLGLV+P GPPLG+TL  R+ET + E  MPF+FA+VG  T+V  + +  W   +SPL  
Sbjct: 327 IWLGLVVPHGPPLGSTLAIRSETFVNEFLMPFSFALVGQKTNVNLISKETWPKQISPLIY 386

Query: 361 MIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFT 420
           M + G+++K + +   +L  ++P RDSLTL LMM+LRGQ+++LLY+HWIDK ++G+P ++
Sbjct: 387 MSIVGFVTKFVSSTGAALFFKVPTRDSLTLGLMMNLRGQIDILLYLHWIDKQMVGLPGYS 446

Query: 421 LLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLI 480
           ++VL  +V+TG+  PLISFLYDPTRPY  +KRRTIQH P +TE  LV+ V + ++ +GLI
Sbjct: 447 VMVLYAIVVTGVTAPLISFLYDPTRPYRSSKRRTIQHTPQNTETGLVLAVTDHDTFSGLI 506

Query: 481 NLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTND-----------DA 529
             L+ + PT  SPFS++++ L+EL GR  PL + ++ +        +           D 
Sbjct: 507 TFLDFAYPTKTSPFSVFAIQLVELEGRAQPLFIAHDKKREEEYEEEEEPAERMGSRRVDQ 566

Query: 530 IHNALKLYSETRGE-LKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEG 588
           + +A KLY E R E +  +A+TA A   +MYQNICELAL  K   I+LP+ KE   +   
Sbjct: 567 VQSAFKLYQEKRSECVTMHAYTAHASKHNMYQNICELALTKKTAFILLPYQKERLQDAAL 626

Query: 589 TQILRRGVQSVNIKVLSHAPCSVGVLVDKGNFRN--------PMHAAGGSMRR---HHFV 637
           T++   G+ SVN  VL+H PCSV +  +KG  +N        P H    S  R   + FV
Sbjct: 627 TELRDSGMLSVNADVLAHTPCSVCIYYEKGRLKNAMVRSSMDPQHTTNSSHMRQEMYRFV 686

Query: 638 VLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNE 697
           VLFLGGAD REAL  ADRM  N  ++LTVIRFL+ NHEG+DE EKKLDDG+VTWFWVKNE
Sbjct: 687 VLFLGGADNREALHLADRMTENPFINLTVIRFLAHNHEGEDEREKKLDDGVVTWFWVKNE 746

Query: 698 SNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELG 757
           SN RV Y+EVVV+NGAET+A+IQA+N   Y DLWI GR +GIN K+LEGL  WSED++LG
Sbjct: 747 SNARVSYKEVVVKNGAETLAAIQAMNVNDY-DLWITGRREGINPKILEGLSTWSEDHQLG 805

Query: 758 VIGDYVASIDFGSTASVLVMQQQVLRGQG 786
           VIGD VA   F S  SVLV+QQQV    G
Sbjct: 806 VIGDTVAGSVFASEGSVLVVQQQVRNQMG 834

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q1HDT2\|CHX24_ARATH Cation/H(+) antiporter 24 OS=Arabidopsis thaliana GN=CHX24 PE=2 SV=2	Back alignment and function description

>sp\|Q9SIT5\|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1	Back alignment and function description

>sp\|Q9FFB8\|CHX3_ARATH Cation/H(+) antiporter 3 OS=Arabidopsis thaliana GN=CHX3 PE=2 SV=1	Back alignment and function description

>sp\|Q9LMJ1\|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1	Back alignment and function description

>sp\|Q9FYC1\|CHX4_ARATH Cation/H(+) antiporter 4 OS=Arabidopsis thaliana GN=CHX4 PE=2 SV=1	Back alignment and function description

>sp\|Q8VYD4\|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1	Back alignment and function description

>sp\|Q9LUN4\|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1	Back alignment and function description

>sp\|O22920\|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1	Back alignment and function description

>sp\|Q9FFR9\|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		794
225434447		783	PREDICTED: cation/H(+) antiporter 24 [Vi	0.965	0.979	0.588	0.0
147803571		746	hypothetical protein VITISV_028835 [Viti	0.919	0.978	0.555	0.0
224105877		716	cation proton exchanger [Populus trichoc	0.884	0.980	0.548	0.0
297801230		861	ATCHX24 [Arabidopsis lyrata subsp. lyrat	0.957	0.882	0.494	0.0
356569488		802	PREDICTED: cation/H(+) antiporter 24-lik	0.939	0.930	0.511	0.0
356537610		763	PREDICTED: cation/H(+) antiporter 24-lik	0.899	0.935	0.534	0.0
224055451		813	cation proton exchanger [Populus trichoc	0.959	0.937	0.496	0.0
15237673		857	cation/H(+) antiporter 25 [Arabidopsis t	0.984	0.912	0.470	0.0
449455130		598	PREDICTED: cation/H(+) antiporter 25-lik	0.732	0.973	0.583	0.0
95105530		856	cation/H+ exchanger, partial [Arabidopsi	0.957	0.887	0.482	0.0

>gi\|225434447\|ref\|XP_002277764.1\| PREDICTED: cation/H(+) antiporter 24 [Vitis vinifera] gi\|297745818\|emb\|CBI15874.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/777 (58%), Positives = 591/777 (76%), Gaps = 10/777 (1%)

Query: 20  RARSRRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGI 79
           R    +   +GIF+GE+PL +PF L+L E+  +I  + ++RFLLKPL+QPRV+S++IGGI
Sbjct: 15  RTTVNKHRSIGIFYGENPLQTPFSLLLLEMSLVILLSRLVRFLLKPLRQPRVVSDVIGGI 74

Query: 80  IVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYI 139
           IVGP++LGR++ FA  M  D    +V ++G++ F+YF+FI+G+KMD ++LK  GRKHV I
Sbjct: 75  IVGPTVLGRSRTFARKMFSDEGSFLVHNLGVLGFIYFLFISGVKMDLSMLKGSGRKHVMI 134

Query: 140 AVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSS 199
           AV G I P  +   VA L R  +D EL K SSI  +  S+++T+FPVL PIL++ NLLSS
Sbjct: 135 AVCGAITPLVSVTLVALLFRTRLDHELEKGSSIWGVAASMSITAFPVLYPILREQNLLSS 194

Query: 200 EMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTML 259
           E+GRMA+  ++I DA+GI  VIAFEAAKQGE  S  A+W+L+SL   + F    VRR M 
Sbjct: 195 EIGRMALSVSIITDALGITFVIAFEAAKQGESRSKAALWHLVSLFGFIGFTTTVVRRAMT 254

Query: 260 WIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLV 319
           W++ +TP GKPV+Q YI+ ILLGV+VM FL+D FG AIANGPLWLGL IPDGPPLGAT+V
Sbjct: 255 WVIRRTPEGKPVAQVYIIFILLGVMVMAFLSDFFGAAIANGPLWLGLAIPDGPPLGATIV 314

Query: 320 ERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLL 379
           ++ ET++ME+FMPFA+A VG+Y D++++ ++ WS LSPLF M++TG+ +KLL TL+ +  
Sbjct: 315 DKCETIMMELFMPFAYASVGLYVDLFSLSDY-WSALSPLFIMVITGFAAKLLSTLLTAHF 373

Query: 380 CQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISF 439
            +MPFRDSLTLSL+MS RGQVE LLY+HW+D  ++ +P FTL+VL + V+T +A PL+S 
Sbjct: 374 LEMPFRDSLTLSLIMSFRGQVEYLLYLHWVDLKMVRLPGFTLMVLLSTVLTAVATPLVST 433

Query: 440 LYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSL 499
           LY+PTRPYMVNKRRTIQH  P+ EL LV C+H++E+VA LINLLEVS PT+ SP  +Y+L
Sbjct: 434 LYNPTRPYMVNKRRTIQHTAPNAELHLVACIHDQENVAWLINLLEVSNPTLSSPVVVYAL 493

Query: 500 HLIELIGRGIPLLVDYE-NEEHSPEYTNDDAIHNALKLYSETRGE-LKFNAFTALAPMRS 557
            L+EL+GR  P+ +D+E +E+   E T+   +H+ALKLY ETRG+ ++ + FTA++P RS
Sbjct: 494 RLVELLGRASPIFIDHEKHEKQYGENTSYATVHSALKLYQETRGDYVRIHPFTAVSPRRS 553

Query: 558 MYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDK 617
           MYQ+ICELAL NKA+LIILPFH       EG  I       VN  +L+HAPCSV +LVDK
Sbjct: 554 MYQDICELALVNKASLIILPFHA------EGIDINGNISHMVNSCILAHAPCSVAILVDK 607

Query: 618 GNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGD 677
           G  RN            HF VLFLGGADAREALAYADRM GN DVSLTV+RFL+ N+E D
Sbjct: 608 GPQRNQCVTRSFRASSRHFAVLFLGGADAREALAYADRMAGNPDVSLTVVRFLTENYERD 667

Query: 678 DEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQ 737
           D +EKKLDDGLVTWFWVKNE+NE+V Y+EVVVRNG ETV++IQA+N++AY DLWI+GR  
Sbjct: 668 DGLEKKLDDGLVTWFWVKNEANEQVIYKEVVVRNGEETVSAIQAMNNDAY-DLWIMGRKH 726

Query: 738 GINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQVLRGQGPPKLAVIC 794
           GIN  LLEGL  WSE+ ELGVIGDY+AS+DF STASVLV+QQQVLRGQ  P    IC
Sbjct: 727 GINPVLLEGLSNWSENQELGVIGDYIASMDFSSTASVLVLQQQVLRGQRMPASHSIC 783

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147803571\|emb\|CAN64281.1\| hypothetical protein VITISV_028835 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224105877\|ref\|XP_002313963.1\| cation proton exchanger [Populus trichocarpa] gi\|222850371\|gb\|EEE87918.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297801230\|ref\|XP_002868499.1\| ATCHX24 [Arabidopsis lyrata subsp. lyrata] gi\|297314335\|gb\|EFH44758.1\| ATCHX24 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356569488\|ref\|XP_003552932.1\| PREDICTED: cation/H(+) antiporter 24-like [Glycine max]	Back alignment and taxonomy information

>gi\|356537610\|ref\|XP_003537319.1\| PREDICTED: cation/H(+) antiporter 24-like [Glycine max]	Back alignment and taxonomy information

>gi\|224055451\|ref\|XP_002298507.1\| cation proton exchanger [Populus trichocarpa] gi\|222845765\|gb\|EEE83312.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|15237673\|ref\|NP_200654.1\| cation/H(+) antiporter 25 [Arabidopsis thaliana] gi\|75309053\|sp\|Q9FGH6.1\|CHX25_ARATH RecName: Full=Cation/H(+) antiporter 25; AltName: Full=Protein CATION/H+ EXCHANGER 25; Short=AtCHX25 gi\|10177023\|dbj\|BAB10261.1\| Na+/H+ antiporter-like [Arabidopsis thaliana] gi\|332009672\|gb\|AED97055.1\| cation/H(+) antiporter 25 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449455130\|ref\|XP_004145306.1\| PREDICTED: cation/H(+) antiporter 25-like [Cucumis sativus] gi\|449472766\|ref\|XP_004153689.1\| PREDICTED: cation/H(+) antiporter 25-like [Cucumis sativus] gi\|449523407\|ref\|XP_004168715.1\| PREDICTED: cation/H(+) antiporter 25-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|95105530\|gb\|ABF54932.1\| cation/H+ exchanger, partial [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		794
TAIR\|locus:2171238		857	CHX25 "cation/H+ exchanger 25"	0.782	0.724	0.437	2.2e-144
TAIR\|locus:2166168		859	CHX24 "cation/H+ exchanger 24"	0.749	0.692	0.447	1.6e-143
TAIR\|locus:2054152		821	CHX15 "cation/hydrogen exchang	0.816	0.789	0.355	6.8e-111
TAIR\|locus:2007392		829	CHX14 "cation/hydrogen exchang	0.933	0.893	0.310	3.3e-102
TAIR\|locus:2090462		800	CHX19 "cation/H+ exchanger 19"	0.921	0.915	0.315	5.6e-100
TAIR\|locus:2060827		831	ATCHX13 [Arabidopsis thaliana	0.940	0.898	0.308	3.7e-96
TAIR\|locus:2172631		822	CHX3 "cation/H+ exchanger 3" [	0.850	0.821	0.316	7.8e-94
TAIR\|locus:2160457		810	CHX18 "cation/H+ exchanger 18"	0.792	0.776	0.335	2.1e-91
TAIR\|locus:2031968		867	CHX23 "cation/H+ exchanger 23"	0.895	0.820	0.309	1.9e-90
TAIR\|locus:2128484		820	CHX17 "cation/H+ exchanger 17"	0.797	0.771	0.307	2.7e-90

TAIR\|locus:2171238 CHX25 "cation/H+ exchanger 25" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1411 (501.8 bits), Expect = 2.2e-144, P = 2.2e-144
 Identities = 278/636 (43%), Positives = 409/636 (64%)

Query:     4 SSILYKRLNTSRVGESRARSRRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLL 63
             + ++  R+ ++R+ E   +     P G+F GE+ ++  F   L E + II    I+  LL
Sbjct:    27 AGVVSSRVFSARLPEVCRQVHDKQPFGMFKGENGMNYTFSTFLIEAILIIFFIKIVYVLL 86

Query:    64 KPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIK 123
             +PL+QPR++ E+IGG+++GPS+LGRN+ F   + P  +  +  ++G+M F YF F+   K
Sbjct:    87 RPLRQPRIVCEIIGGMMIGPSMLGRNRNFNYYLFPPIANYICANIGLMGFFYFFFLTAAK 146

Query:   124 MDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTS 183
              D   + +  RKH YIA   V++P A   +     +  MD  L K SSIG +T +L  TS
Sbjct:   147 TDVAEIFKAPRKHKYIAAVSVLVPIACVGSTGAALKHKMDIRLQKPSSIGGVTFALGFTS 206

Query:   184 FPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQ--GEGDSVDAVWYLI 241
             FPV+  +L+D+NLL+SE+G+ A+   ++GD +G+ +++ FEA  Q  G G +   +W+LI
Sbjct:   207 FPVIYTVLRDMNLLNSEIGKFAMSVTLLGDMVGVYVLVLFEAMAQADGGGGAYSVIWFLI 266

Query:   242 SLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGP 301
             S  I+ A + + V+R+  WIV KTP G  V+Q YIV IL+GVLV  FLTDMFGMAIA GP
Sbjct:   267 SAAIMAACLLLVVKRSFEWIVAKTPEGGLVNQNYIVNILMGVLVSCFLTDMFGMAIAVGP 326

Query:   302 LWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGW-SGLSPLFG 360
             +WLGLV+P GPPLG+TL  R+ET + E  MPF+FA+VG  T+V  + +  W   +SPL  
Sbjct:   327 IWLGLVVPHGPPLGSTLAIRSETFVNEFLMPFSFALVGQKTNVNLISKETWPKQISPLIY 386

Query:   361 MIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFT 420
             M + G+++K + +   +L  ++P RDSLTL LMM+LRGQ+++LLY+HWIDK ++G+P ++
Sbjct:   387 MSIVGFVTKFVSSTGAALFFKVPTRDSLTLGLMMNLRGQIDILLYLHWIDKQMVGLPGYS 446

Query:   421 LLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLI 480
             ++VL  +V+TG+  PLISFLYDPTRPY  +KRRTIQH P +TE  LV+ V + ++ +GLI
Sbjct:   447 VMVLYAIVVTGVTAPLISFLYDPTRPYRSSKRRTIQHTPQNTETGLVLAVTDHDTFSGLI 506

Query:   481 NLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLV--------DYENEEHSPEYTND---DA 529
               L+ + PT  SPFS++++ L+EL GR  PL +        +YE EE   E       D 
Sbjct:   507 TFLDFAYPTKTSPFSVFAIQLVELEGRAQPLFIAHDKKREEEYEEEEEPAERMGSRRVDQ 566

Query:   530 IHNALKLYSETRGE-LKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEG 588
             + +A KLY E R E +  +A+TA A   +MYQNICELAL  K   I+LP+ KE   +   
Sbjct:   567 VQSAFKLYQEKRSECVTMHAYTAHASKHNMYQNICELALTKKTAFILLPYQKERLQDAAL 626

Query:   589 TQILRRGVQSVNIKVLSHAPCSVGVLVDKGNFRNPM 624
             T++   G+ SVN  VL+H PCSV +  +KG  +N M
Sbjct:   627 TELRDSGMLSVNADVLAHTPCSVCIYYEKGRLKNAM 662

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

TAIR\|locus:2166168 CHX24 "cation/H+ exchanger 24" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2172631 CHX3 "cation/H+ exchanger 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FGH6	CHX25_ARATH	No assigned EC number	0.4709	0.9848	0.9124	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024010001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (783 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		794
PLN03159		832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	1e-176
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	5e-37
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	4e-31
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	2e-16

>gnl\|CDD\|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	Back alignment and domain information

 Score =  528 bits (1361), Expect = e-176
 Identities = 293/788 (37%), Positives = 460/788 (58%), Gaps = 36/788 (4%)

Query: 30  GIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRN 89
           GI+ G++PLD    L + ++  ++ TT ++ F+LKP +QPRVISE++GG+I+GPS+LG++
Sbjct: 29  GIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQS 88

Query: 90  KKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTA 149
           + FA  + P  S +V+ ++  +  +YF+F+ G++MD ++++R G+K + IA+ G+ +P  
Sbjct: 89  EVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFC 148

Query: 150 TSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTA 209
              A +F+  +     + + + I  +  +L+VT+FPVL  IL ++ L+++E+GR+A+  A
Sbjct: 149 IGLAFSFIFHQV-SRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAA 207

Query: 210 VIGDAIGINIVIAFEAA-KQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVG 268
           ++ D +   I++A   A  + +  S+ ++W L+S V  + F    VR  + WI+ +TP G
Sbjct: 208 LVND-MCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEG 266

Query: 269 KPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIME 328
           +  S+ YI  IL GV++ GF+TD  G     G    GLVIP+G PLG TL+E+ E  +  
Sbjct: 267 ETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PLGVTLIEKLEDFVSG 325

Query: 329 IFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSL 388
           + +P  FA+ G+ T+V  +      GL  L  +I+     K++GT+I +    MPFR+ +
Sbjct: 326 LLLPLFFAISGLKTNVTKIQGPATWGL--LVLVIIMASAGKIMGTIIIAFFYTMPFREGI 383

Query: 389 TLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTRPYM 448
           TL  +M+ +G VE+++     D+ ++    F ++VL  V +T +  P+++ +Y P R  +
Sbjct: 384 TLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLV 443

Query: 449 VNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRG 508
             KRRTIQ    D ELR++VCVH   +V  +INLLE S PT  SP  IY LHL+EL GR 
Sbjct: 444 GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRA 503

Query: 509 IPLLVDYENEEHSPEYTN-----DDAIHNALKLYSETRGELKFNAFTALAPMRSMYQNIC 563
             +L+ +   +      N      D I NA + Y +  G +     TA++P  +M++++C
Sbjct: 504 SAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVC 563

Query: 564 ELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDKGNFRNP 623
            LA D + +LII+PFHK+   +  G +      + VN  VL++APCSVG+LVD+G     
Sbjct: 564 NLAEDKRVSLIIIPFHKQQTVD-GGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGAT 622

Query: 624 MHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNH--------- 674
             A+      HH  VLF GG D REALAYA RM  +  ++LTV+RF+             
Sbjct: 623 RLASNQVS--HHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPA 680

Query: 675 -----------EGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVN 723
                      E D + E++LD+  +  F  +N  NE + Y E VV NG ETVA+I+++ 
Sbjct: 681 SSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSM- 739

Query: 724 DEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQVLR 783
           D A+ DL+IVGR QG+   L  GL  WSE  ELG IGD +AS DF +T SVLV+QQ V  
Sbjct: 740 DSAH-DLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVGT 798

Query: 784 GQGPPKLA 791
           G  P  L 
Sbjct: 799 GPQPDDLG 806

Length = 832

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		794
PLN03159		832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669		558	putative cation:proton antiport protein; Provision	100.0
PRK03659		601	glutathione-regulated potassium-efflux system prot	100.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.96
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.96
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.94
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.92
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.91
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.77
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.75
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.72
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.53
PRK11175		305	universal stress protein UspE; Provisional	99.49
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	99.2
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	99.19
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	99.18
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.14
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	99.13
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	99.07
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.03
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.92
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.84
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.46
PRK15456		142	universal stress protein UspG; Provisional	98.4
PRK15005		144	universal stress protein F; Provisional	98.4
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.31
PRK15118		144	universal stress global response regulator UspA; P	98.3
cd01987		124	USP_OKCHK USP domain is located between the N-term	98.29
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.28
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.27
PRK09982		142	universal stress protein UspD; Provisional	98.19
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.14
PRK09982		142	universal stress protein UspD; Provisional	98.09
PRK15005		144	universal stress protein F; Provisional	98.06
PRK11175		305	universal stress protein UspE; Provisional	97.99
cd00293		130	USP_Like Usp: Universal stress protein family. The	97.99
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	97.98
PRK10116		142	universal stress protein UspC; Provisional	97.96
PRK10116		142	universal stress protein UspC; Provisional	97.91
PRK15118		144	universal stress global response regulator UspA; P	97.89
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	97.79
cd01987		124	USP_OKCHK USP domain is located between the N-term	97.76
PRK15456		142	universal stress protein UspG; Provisional	97.75
cd00293		130	USP_Like Usp: Universal stress protein family. The	97.7
TIGR00698		335	conserved hypothetical integral membrane protein.	97.52
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.46
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	97.14
COG0385		319	Predicted Na+-dependent transporter [General funct	97.12
COG0589		154	UspA Universal stress protein UspA and related nuc	97.07
COG3493		438	CitS Na+/citrate symporter [Energy production and	97.03
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	96.98
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.87
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	96.86
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	96.81
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.79
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.67
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	96.51
PRK03562		621	glutathione-regulated potassium-efflux system prot	96.44
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	96.29
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	96.18
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	96.17
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	96.02
PRK03659		601	glutathione-regulated potassium-efflux system prot	96.02
PRK10669		558	putative cation:proton antiport protein; Provision	95.98
COG3180		352	AbrB Putative ammonia monooxygenase [General funct	95.95
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	95.94
PRK05274		326	2-keto-3-deoxygluconate permease; Provisional	95.9
COG2855		334	Predicted membrane protein [Function unknown]	95.83
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	95.75
COG0589		154	UspA Universal stress protein UspA and related nuc	95.71
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	95.55
TIGR00841		286	bass bile acid transporter. Functionally character	95.4
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	95.3
PRK03818		552	putative transporter; Validated	95.18
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.11
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	95.08
PRK05326		562	potassium/proton antiporter; Reviewed	95.06
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	94.86
TIGR00698		335	conserved hypothetical integral membrane protein.	94.75
COG2855		334	Predicted membrane protein [Function unknown]	94.71
PLN03159		832	cation/H(+) antiporter 15; Provisional	94.25
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	93.65
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	93.26
TIGR01625		154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	93.23
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	92.74
PRK04972		558	putative transporter; Provisional	92.41
PRK10490		895	sensor protein KdpD; Provisional	91.67
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	91.19
PRK10490		895	sensor protein KdpD; Provisional	89.73
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	89.33
TIGR00930		953	2a30 K-Cl cotransporter.	89.04
PF03977		360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	88.63
TIGR03136		399	malonate_biotin Na+-transporting malonate decarbox	88.48
PF02040		423	ArsB: Arsenical pump membrane protein; InterPro: I	88.41
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	87.41
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	87.11
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	86.95
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	85.87
COG2985		544	Predicted permease [General function prediction on	85.73
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	85.61
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	84.74
PRK04972		558	putative transporter; Provisional	83.13
PF03547		385	Mem_trans: Membrane transport protein; InterPro: I	82.14
PRK04288		232	antiholin-like protein LrgB; Provisional	81.49
KOG2310		646	consensus DNA repair exonuclease MRE11 [Replicatio	81.22
PRK03818		552	putative transporter; Validated	80.58
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	80.33
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	80.25
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	80.19
COG3329		372	Predicted permease [General function prediction on	80.08

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.1e-153  Score=1369.26  Aligned_cols=752  Identities=37%  Similarity=0.658  Sum_probs=689.2

Q ss_pred             ccccccCCCCCccccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCC
Q 003798           19 SRARSRRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLP   98 (794)
Q Consensus        19 ~~~~~~~~~~~g~~~g~~pl~~~l~~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp   98 (794)
                      |+ .+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||++++||++|+++||+++|.++.+.+.+||
T Consensus        19 c~-~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp   97 (832)
T PLN03159         19 CY-APMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP   97 (832)
T ss_pred             cc-cCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence            88 44467999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHH
Q 003798           99 DNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTS  178 (794)
Q Consensus        99 ~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~  178 (794)
                      .++.+.+++++++|++|+||++|+|+|++.+||++|+++.+|+.++++|+++++++++++... .........++++|++
T Consensus        98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~-~~~~~~~~~~l~~g~a  176 (832)
T PLN03159         98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQV-SRNVHQGTFILFLGVA  176 (832)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhHHHHHHHHH
Confidence            888889999999999999999999999999999999999999999999999999888877432 1111223567899999


Q ss_pred             HhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003798          179 LAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTM  258 (794)
Q Consensus       179 ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~  258 (794)
                      +|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++.++...+......++.++..+++++++.+++||++
T Consensus       177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~  256 (832)
T PLN03159        177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI  256 (832)
T ss_pred             HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998877655443324456777778888888999999999


Q ss_pred             HHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 003798          259 LWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVV  338 (794)
Q Consensus       259 ~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~  338 (794)
                      .|+.+|++++++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +|+++++.+|++++++++|+|+||+++
T Consensus       257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~v  335 (832)
T PLN03159        257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS  335 (832)
T ss_pred             HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998888999999999999999999999999999999999999998 689999999999999999999999999


Q ss_pred             cccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCch
Q 003798          339 GMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPP  418 (794)
Q Consensus       339 G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~  418 (794)
                      |+++|+..+..  ...|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.|+++++.
T Consensus       336 Gl~idl~~l~~--~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~  413 (832)
T PLN03159        336 GLKTNVTKIQG--PATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDES  413 (832)
T ss_pred             hheeeHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchh
Confidence            99999988751  3356666777888899999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhHHHHHHhhcCCCCcccccccccccCCCCCCCceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEE
Q 003798          419 FTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYS  498 (794)
Q Consensus       419 ~~~lv~~~ll~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~  498 (794)
                      |++++++++++|++++|++.++|+|+||+..|++|++|+.++++|+|+|+|+|+++|+++|++|++++++++++|+++|+
T Consensus       414 f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~  493 (832)
T PLN03159        414 FAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYV  493 (832)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEE
Confidence            99999999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeecCCCccccccccccCC--C---CCCCcchHHHHHHHHhhhhcCceEEEEeEEeccCCChhHHHHHHHHhcCCcE
Q 003798          499 LHLIELIGRGIPLLVDYENEEH--S---PEYTNDDAIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATL  573 (794)
Q Consensus       499 lhLvel~~r~~~~~~~~~~~~~--~---~~~~~~~~i~~af~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~l  573 (794)
                      +||+|++||++|+++.|+.++.  +   ....++|+++++|++|++++++++++++|++||+++||+|||+.|+||++++
T Consensus       494 lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~sl  573 (832)
T PLN03159        494 LHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSL  573 (832)
T ss_pred             EEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCE
Confidence            9999999999999999986511  1   1335589999999999976458999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCCCCCCCcccCCCccceEEEEEecCCccHHHHHHH
Q 003798          574 IILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAY  652 (794)
Q Consensus       574 Iilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~~~~~~~~~~~~~~~~~I~v~f~GG~dDreAL~~  652 (794)
                      ||+||||+|+.|  |++++.+. +|++|+|||++||||||||||||.....  +.+.++..+||+++|+|||||||||+|
T Consensus       574 Iilpfhk~~~~d--g~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~--~~~~~~~~~~v~~~F~GG~DDREALa~  649 (832)
T PLN03159        574 IIIPFHKQQTVD--GGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGAT--RLASNQVSHHVAVLFFGGPDDREALAY  649 (832)
T ss_pred             EEECCCCccCCC--CCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccc--cccccccceeEEEEecCCcchHHHHHH
Confidence            999999999999  99888877 9999999999999999999999976422  123345578999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeeccCCCCC--------------------chhhhhhHHHHHHHHHhhcCCCCceEEEEEEecCh
Q 003798          653 ADRMVGNLDVSLTVIRFLSFNHEGD--------------------DEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNG  712 (794)
Q Consensus       653 A~rma~~~~v~ltvl~~~~~~~~~~--------------------~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~  712 (794)
                      |+|||+||++++||+||++.+...+                    ++.|+++||++++|||.++..+++|.|.||+|+|+
T Consensus       650 a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~  729 (832)
T PLN03159        650 AWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNG  729 (832)
T ss_pred             HHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCH
Confidence            9999999999999999997533111                    35688999999999999998889999999999999


Q ss_pred             HHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEEeec
Q 003798          713 AETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQV  781 (794)
Q Consensus       713 ~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~~  781 (794)
                      +||+++||+++++  |||+||||+|+.+|++|+||+||+||||||+|||+|||+||++++||||||||+
T Consensus       730 ~e~~~~l~~~~~~--ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~  796 (832)
T PLN03159        730 EETVAAIRSMDSA--HDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV  796 (832)
T ss_pred             HHHHHHHHHhhcc--CcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence            9999999999988  999999999988899999999999999999999999999999999999999997

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05274 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins	Back alignment and domain information

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit	Back alignment and domain information

>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea	Back alignment and domain information

>PRK04288 antiholin-like protein LrgB; Provisional	Back alignment and domain information

>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3329 Predicted permease [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		794
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 52.2 bits (124), Expect = 6e-07
 Identities = 64/428 (14%), Positives = 122/428 (28%), Gaps = 133/428 (31%)

Query: 369 KLLGTLI--PSLLCQMPFRDSLTLS---LMMSLRGQ-----VELLLYIHWIDKLIIGVPP 418
           +L  TL+     + Q    + L ++   LM  ++ +     +   +YI   D+L      
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 419 FTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRT----IQHHPPDTELRLVVCVHEEE 474
           F                     Y+ +R     K R     ++           V +    
Sbjct: 126 FA--------------K-----YNVSRLQPYLKLRQALLELRPAK-------NVLID--- 156

Query: 475 SVAG-----LINLLEVSCPTVD----SPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYT 525
            V G     +   L+V C +        F I+ L+L                  +SPE  
Sbjct: 157 GVLGSGKTWVA--LDV-CLSYKVQCKMDFKIFWLNL---------------KNCNSPE-- 196

Query: 526 NDDAIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNN 585
               +    KL      ++  N  +      ++   I  +    +A L  L   K Y N 
Sbjct: 197 --TVLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKPYENC 246

Query: 586 LEGTQILRRGVQSVN-IKVLSHAPCSVGVLV---DKGNFRNPMHAAGGSMRRHHFVVLFL 641
           L    +L   VQ+       + + C   +L+    K            +   H  +    
Sbjct: 247 L---LVL-LNVQNAKAWNAFNLS-CK--ILLTTRFKQVTD----FLSAATTTHISLDHHS 295

Query: 642 GGADAREALA----YADRMVGNL-----DVSLTVIRFLSFNHEGDDEMEKKLDDGLVTW- 691
                 E  +    Y D    +L       +   +  ++          + + DGL TW 
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA----------ESIRDGLATWD 345

Query: 692 FWVKNESNERVRYREVVVRNGAETVASIQAVND----EAYCDLWIVGRYQGINGKLLEGL 747
            W     ++     E          +S+  +      + +  L +      I   LL  +
Sbjct: 346 NWKHVNCDKLTTIIE----------SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 748 EAWSEDNE 755
             W +  +
Sbjct: 396 --WFDVIK 401

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		794
1zcd_A		388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.9
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.6
3loq_A		294	Universal stress protein; structural genomics, PSI	99.51
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.49
3olq_A		319	Universal stress protein E; structural genomics, P	99.48
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	99.44
3fdx_A		143	Putative filament protein / universal stress PROT;	98.48
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	98.46
3dlo_A		155	Universal stress protein; unknown function, struct	98.46
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	98.44
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	98.42
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	98.42
3tnj_A		150	Universal stress protein (USP); structural genomic	98.37
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	98.35
2z08_A		137	Universal stress protein family; uncharacterized c	98.34
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	98.29
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	98.28
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	98.27
3fg9_A		156	Protein of universal stress protein USPA family; A	98.26
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	98.25
3dlo_A		155	Universal stress protein; unknown function, struct	98.25
3tnj_A		150	Universal stress protein (USP); structural genomic	98.22
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	98.21
3fg9_A		156	Protein of universal stress protein USPA family; A	98.2
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	98.1
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	98.1
3fdx_A		143	Putative filament protein / universal stress PROT;	98.08
2z08_A		137	Universal stress protein family; uncharacterized c	98.05
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	98.03
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	97.98
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	97.92
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	97.81
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	97.77
3olq_A		319	Universal stress protein E; structural genomics, P	97.66
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	97.65
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	97.65
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	97.63
3loq_A		294	Universal stress protein; structural genomics, PSI	97.63
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	97.56
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	97.47
3g40_A		294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	96.17

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A	Back alignment and structure

Probab=99.90  E-value=7.5e-24  Score=229.71  Aligned_cols=301  Identities=13%  Similarity=0.124  Sum_probs=213.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHH----HhcCc--hhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798          104 VVRSVGIMAFMYFMFIAGIKMDFTLL----KRCGR--KHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT  177 (794)
Q Consensus       104 ~l~~l~~lgl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~  177 (794)
                      ....+.+-.+.+|||.+|+|+|.+.+    ++.+|  .....++.|+++|+++.    ..+....       ..+.....
T Consensus        59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy----~~~~~~~-------~~~~~gw~  127 (388)
T 1zcd_A           59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLY----LAFNYAD-------PITREGWA  127 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH----GGGCCSS-------TTHHHHTS
T ss_pred             HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHH----HHHhcCC-------hhhhhhhH
Confidence            45667888999999999999999877    55444  37888999999999873    2232211       23445566


Q ss_pred             HHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798          178 SLAVTSFPVLNPILKDLNL-LSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR  256 (794)
Q Consensus       178 ~ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~  256 (794)
                      +.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++++   ++ .  ...+... .++++++.      
T Consensus       128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~--~~~~l~~-~~~~~~~~------  194 (388)
T 1zcd_A          128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-L--SMASLGV-AAVAIAVL------  194 (388)
T ss_dssp             SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-C--CHHHHHH-HHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-c--cHHHHHH-HHHHHHHH------
Confidence            6777888888899998754 45666799999999999999999988853   22 2  1111111 11111111      


Q ss_pred             HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC----CchhHHHHHHHHHHHHHHHH
Q 003798          257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGP----PLGATLVERTETLIMEIFMP  332 (794)
Q Consensus       257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~----~~~~~l~~kl~~~~~~~~~P  332 (794)
                         ++.+|..    +++...+..+ .+ .+.+.++..|+|+.+|+|++|+++|..+    +..+++++++++++..+++|
T Consensus       195 ---~~l~r~~----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilP  265 (388)
T 1zcd_A          195 ---AVLNLCG----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILP  265 (388)
T ss_dssp             ---HHHHHTT----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHH
T ss_pred             ---HHHHHhc----chhHHHHHHH-HH-HHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence               2223321    1223344433 22 4456779999999999999999999853    45789999999999999999


Q ss_pred             HH-HHHhccccccccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHhHHHH
Q 003798          333 FA-FAVVGMYTDVYAMFE-FGWSGLSPLFGMIVTGYISKLLGTLIPSLLC----------QMPFRDSLTLSLMMSLRGQV  400 (794)
Q Consensus       333 lf-F~~~G~~~dl~~l~~-~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~----------~~~~~e~~~lgl~m~~kG~~  400 (794)
                      +| |+..|+++|...+.. .++..|    .+++..+++|++|++..++..          |++|+|...+|++++.++++
T Consensus       266 lFaFanaGv~l~~~~~~~l~~~~~l----gi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftm  341 (388)
T 1zcd_A          266 LFAFANAGVSLQGVTLDGLTSILPL----GIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTM  341 (388)
T ss_dssp             HHHHHHCCCCCSSSCCCTHHHHSST----TTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHH
T ss_pred             HHHHHhcCeeecccchhhccChHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHH
Confidence            99 999999999743220 001222    344455889998855544444          99999999999999999999


Q ss_pred             HHHHHHhhhhccc--cCCchhHHHHHHHHHHHHhHHHHHHhhc
Q 003798          401 ELLLYIHWIDKLI--IGVPPFTLLVLSTVVITGIAGPLISFLY  441 (794)
Q Consensus       401 ~l~~~~~~~~~~i--i~~~~~~~lv~~~ll~t~i~~plv~~l~  441 (794)
                      ++++++.+++.+.  +.++.+..+++++++++.+.+.++++.+
T Consensus       342 sL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~  384 (388)
T 1zcd_A          342 SIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL  384 (388)
T ss_dssp             HHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred             HHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999998875  3456688888888886655555555443

PyMOL of 1zcd

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		794
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.67
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.64
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	98.55
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	98.39
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.39
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.36
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.13
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.05
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.02
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	97.99
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	97.74
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	96.56

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.67  E-value=1.2e-07  Score=88.58  Aligned_cols=141  Identities=13%  Similarity=0.051  Sum_probs=90.7

Q ss_pred             ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccc-c-C-CCCCC--------CcchHHHH
Q 003798          464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYEN-E-E-HSPEY--------TNDDAIHN  532 (794)
Q Consensus       464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~-~-~-~~~~~--------~~~~~i~~  532 (794)
                      .|||+|++..+....+++.+..++...+  ..++++|+++.............. . . .....        ...++..+
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la~~~~--a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFKTLKA--EEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   81 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTCCSSC--CEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHhcC--CEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            4899999998899999999888876554  689999999865432211100000 0 0 00000        00111222


Q ss_pred             HHHHhhhhc--CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCC
Q 003798          533 ALKLYSETR--GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPC  609 (794)
Q Consensus       533 af~~~~~~~--~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApC  609 (794)
                      .++.+.+..  .+++++.....   .+..+.||+.|++.++|+|+||.|++...        .+. ++++.++|++++||
T Consensus        82 ~l~~~~~~~~~~gv~~~~~~~~---G~~~~~I~~~a~~~~~dliV~G~~~~~~~--------~~~~~GS~a~~vl~~s~~  150 (160)
T d1mjha_          82 KMENIKKELEDVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNL--------KEILLGSVTENVIKKSNK  150 (160)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCC--------TTCSSCHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHhcCCeEEEEEEe---ccHHHHHhhhhhccccceEEeccCCCCcc--------cccccCcHHHHHHhcCCC
Confidence            233332221  56777766655   47899999999999999999999965321        233 78999999999999


Q ss_pred             ceEEEecC
Q 003798          610 SVGVLVDK  617 (794)
Q Consensus       610 sVgIlvdR  617 (794)
                      ||-|...+
T Consensus       151 pVlvV~~~  158 (160)
T d1mjha_         151 PVLVVKRK  158 (160)
T ss_dssp             CEEEECCC
T ss_pred             CEEEEcCC
Confidence            99886443

PyMOL of d1mjha_

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure