Citrus Sinensis ID: 003808

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790----
MAKPRKPKNEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVMD
cccccccccccccccccccEEEEEEEEEEEEccccEEEEEEEEEEEcccccEEEEEccccEEEEEEEccEEcEEEEccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccccccccccccEEEEEEEEEEEccccEEEEEccEEEcccccccccccccccccccccEEEEEEEEEcccEEEEEccccccEEEcccccccEEEEEEccccccHHHEEEEEEcccEEEcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccEEHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHcHHHccccccccEEEEEEEEEccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccccEEEEEEccccHHHHHHHccccccccccccccccccccccccccccccccEEEEEcccccHHEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccc
cccccccccccccccccccEEEEEEEEEEEcccEEEEEEEEEEEEEEEcccEEEEEccEEEEEEEEEcccccEEEEcccccEEEccccccEEEEEccHHHHHHHHccccccccccccccEEEEcccccccccccEEEEEEEEEEEccccccccEEEEEEEEEEccccccccEEEEEEEEcccccHHHHcccccccccccEEEEEEEEEccccEEEEcccEEEEEEccccccEEEEEEEccccccHEEEEEEEcccEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccHHcHHHHccEEEEEEEEHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccEcccccHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEccccccEEccccccccEEEEEccccccEEEEEccccHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccc
makprkpkneetkvensgavVRHQKLCLSIDmekhqiygyteleiavpdigivglhaenlgiesvlvdgeptefeyyphnhqnvenekrwrsmvsspssaADAAAAVYISALERElvpnllincckpfkglTDQIEQMNlenkldssaepkqnvKLVRIDYWVEKVEVGihfdgnalhtdnqirrarcwfpciddttqrccydlefTVSQNLIAVSAGSLLYQvlskddpprktyvyrldvpvsaKWITLavapfevlpdhhqslmshiclpanvskIHNTVEFFHNAFSHYEtyldakfpfgsykqvflapemavssstfgAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFgvyitpelpndewllDGLAGFLTDSFIKKFLGNNEARYRRYKAncavckaddsgatalsssasckdlygtqcigifgkirSCKSVAILQMLEKQMGSNFFRKILQNIISRaqgaspvrtlsTKEFRHFANKvgnlerpflkeffprwvgtcgcpvlrmgfsynkrKNIVELAVLRdctvkpdsrtpvlssntdsenrdgdigwpgmmSIRVHeldgmydhpilpmagdAWQLLEIQCHSKLAARralkpkkgskpdgcddngdavagldmrssmesplswiradpeMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKsrrfdeniglprpndfrdfsEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVMD
makprkpkneetkvensgavvrHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLEnkldssaepkqnvKLVRIDYWVEKVEVGIHfdgnalhtdnqiRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVlrdctvkpdsrtpvlssntdsenrdgdigwpGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRalkpkkgskpdgcddnGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALAntaseetdwAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVMD
MAKPRKPKNEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRsmvsspssaadaaaavyisaLERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSklaarralkpkkGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVaqaqaiaalealPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVMD
******************AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPH***********************AAAAVYISALERELVPNLLINCCKPFKGLTDQI*****************NVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTV*********************IGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLA************************************SWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD******AVEFVLQLL****
*******************VVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLT****************EPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDS*************LYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRA********PDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVM*
****************SGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEK****************AAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPD**************RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAAR*************CDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVMD
**************ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVMD
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MAKPRKPKNEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKVMD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query794 2.2.26 [Sep-21-2011]
Q32PW3 1191 Transcription initiation yes no 0.909 0.606 0.282 2e-72
Q6P1X5 1199 Transcription initiation yes no 0.904 0.598 0.274 1e-71
Q5ZIT8 1168 Transcription initiation yes no 0.894 0.607 0.270 1e-71
Q8C176 1104 Transcription initiation yes no 0.903 0.649 0.276 2e-70
Q24325 1221 Transcription initiation yes no 0.887 0.577 0.275 5e-68
P87121 1172 Transcription initiation yes no 0.909 0.616 0.242 1e-52
P23255 1407 Transcription initiation yes no 0.604 0.341 0.272 1e-42
Q97VF1784 Probable aminopeptidase 1 yes no 0.421 0.427 0.209 2e-10
P95928785 Leucyl aminopeptidase OS= no no 0.410 0.415 0.224 5e-10
Q07075 957 Glutamyl aminopeptidase O no no 0.424 0.352 0.222 8e-10
>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio GN=taf2 PE=2 SV=2 Back     alignment and function desciption
 Score =  274 bits (701), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 228/808 (28%), Positives = 383/808 (47%), Gaps = 86/808 (10%)

Query: 21  VRHQKLCLS-IDMEKHQIYGYTELEI--AVPDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
           + HQ +C++ ++ ++  + GY EL I   V ++  + L+++   I  V V+     F Y 
Sbjct: 17  LTHQVVCINNVNFQRKSVIGYVELTIFPTVVNLNRIKLNSKQCRIYRVRVNDLEAPFIYN 76

Query: 78  PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALEREL---VPNLLINCCKPFKGLTDQ 134
               +   +E + R++    S+   A +AV   A   EL   VP+ L       +G   +
Sbjct: 77  DPTLEVCHHESKQRNLNYFSSAYTAAVSAVDPDAGNGELSIKVPSELWK-----QGDEMK 131

Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCID 194
           + ++ +E  LD   +PK  +  V  D      E   H         NQ   +R WFPC+D
Sbjct: 132 VMKVYIEFSLD---QPKGGLHFVVPDVEGNMAERAAH----VFSFGNQ-NSSRFWFPCVD 183

Query: 195 DTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254
             ++ C + LEFTV  +++AVS G L+  V + D   +KTY Y L +P +A  I++AV P
Sbjct: 184 SYSELCTWKLEFTVDASMVAVSCGDLVETVYTHD-MRKKTYHYMLPIPTAAPNISMAVGP 242

Query: 255 FEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM 314
           FE+L D +   ++H CLP  +  + +T+ + H  F  YE  L  ++P+  +K VF+  E 
Sbjct: 243 FEILVDPYMHEVTHFCLPQLLPLLKHTMSYLHEIFEFYEEILTCRYPYSCFKTVFVD-EA 301

Query: 315 AVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLD 374
            V  S++ A+M IFS+ +L+   +IDQ   T   L+ ALA+Q+FG +I+     DEW+L 
Sbjct: 302 YVQVSSY-ASMSIFSTNLLHSGLIIDQTPMTRSFLAQALAQQFFGCFISRMSWADEWVLK 360

Query: 375 GLAGFLTDSFIKKFLGNNEARY-----------RRYKANCAVCKADDSGATALSSSASCK 423
           G++G++   ++KK  G NE R+              K    +     SG     +     
Sbjct: 361 GISGYIYGLYLKKTFGVNEYRHWIKEELDKIVEYELKIGGVLLHPTFSGGKEKDNPTPHL 420

Query: 424 DLYGTQCIGI---FGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVR---- 476
                    +   + K+  CK+  +++++E ++   F  ++   ++S A  AS  +    
Sbjct: 421 HFSIKHPHTLSWEYYKMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKYQSH 480

Query: 477 -----TLSTKEF-RHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELA 530
                 +ST  F +  +N  G    P +K+    WV   G       F++N+++N++EL 
Sbjct: 481 MWSQMLVSTSGFLKSISNVSGKDIGPLIKQ----WVDQSGVVKFFGSFAFNRKRNVLELE 536

Query: 531 VLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQL 590
           + +D T                    G   + G + + V ELDG ++H  L +  ++ + 
Sbjct: 537 IRQDYT------------------SSGTQKYVGPIKVTVQELDGSFNH-TLQIEENSLK- 576

Query: 591 LEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS-SMESPLSWIRADPEMEYLA 649
            +I CHSK    +  K            NG+ V  +D+ +   +SPL WIR DP+M  L 
Sbjct: 577 HDIPCHSKSRRNKKKKIPLM--------NGEEV-DMDLSAMDADSPLLWIRIDPDMSILR 627

Query: 650 EIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRI 709
           ++ F Q   MW  QL  + DVVAQ +AI ALE  P  +      L + L   + F++VR+
Sbjct: 628 KVEFEQADFMWQYQLRYERDVVAQEEAILALEKFP--TPPSRRALTDILEQDQCFYKVRM 685

Query: 710 EAAYALANTA-SEETDWAGLLHLVKFYKSRRF--DENIGLPRPNDFRDFSEYFVLEAIPH 766
            A + LA  A S  + W G   +   + +R F       + + N+F  F  YF+ + IP 
Sbjct: 686 HACFCLAKIANSMVSTWTGPPAMKSLF-TRMFCCKSCPNIVKTNNFISFQSYFLQKTIPV 744

Query: 767 AVAMVRAADNKSPREAVEFVLQLLKVMD 794
           A+A +R   N  PRE + F+L L+K  D
Sbjct: 745 AMAQLRDVQNLCPREVLSFILDLIKYND 772
Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter.
Danio rerio (taxid: 7955)
>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3 Back     alignment and function description
>sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus GN=TAF2 PE=2 SV=1 Back     alignment and function description
>sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus GN=Taf2 PE=2 SV=2 Back     alignment and function description
>sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila melanogaster GN=Taf2 PE=1 SV=2 Back     alignment and function description
>sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf2 PE=3 SV=3 Back     alignment and function description
>sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1 SV=3 Back     alignment and function description
>sp|Q97VF1|APE1_SULSO Probable aminopeptidase 1 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape1 PE=3 SV=1 Back     alignment and function description
>sp|P95928|APE2_SULSO Leucyl aminopeptidase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape2 PE=1 SV=1 Back     alignment and function description
>sp|Q07075|AMPE_HUMAN Glutamyl aminopeptidase OS=Homo sapiens GN=ENPEP PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query794
225455842 1345 PREDICTED: transcription initiation fact 0.996 0.588 0.807 0.0
225455844 1325 PREDICTED: transcription initiation fact 0.996 0.596 0.807 0.0
224132980 1359 predicted protein [Populus trichocarpa] 0.994 0.581 0.795 0.0
356513902 1388 PREDICTED: transcription initiation fact 0.997 0.570 0.780 0.0
356563105 1388 PREDICTED: transcription initiation fact 0.997 0.570 0.781 0.0
356563107 1368 PREDICTED: transcription initiation fact 0.997 0.578 0.781 0.0
449516818 1362 PREDICTED: transcription initiation fact 0.984 0.574 0.721 0.0
449439379 1362 PREDICTED: transcription initiation fact 0.984 0.574 0.721 0.0
297842145 1390 membrane alanyl aminopeptidase [Arabidop 0.997 0.569 0.709 0.0
22330618 1390 TBP-associated factor 2 [Arabidopsis tha 0.997 0.569 0.708 0.0
>gi|225455842|ref|XP_002273382.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1336 bits (3457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/798 (80%), Positives = 709/798 (88%), Gaps = 7/798 (0%)

Query: 1   MAKPRKPKNEE-TKVENSG--AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHA 57
           MAKPRKPK ++ TK ENS   AVVRHQKLCLSID++K +IYGYTELEIAVPDIGIVGLHA
Sbjct: 1   MAKPRKPKTDDNTKPENSNSRAVVRHQKLCLSIDIDKRRIYGYTELEIAVPDIGIVGLHA 60

Query: 58  ENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELV 117
           ENL IESV VDGEPTEFE+YPH HQ+ E+EKRW S++S+ SSAAD A+++Y+SALEREL 
Sbjct: 61  ENLVIESVSVDGEPTEFEFYPH-HQHTESEKRWSSVLSA-SSAADVASSMYVSALERELD 118

Query: 118 PNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNAL 177
           PNLLI CCKP K  ++Q  Q +LEN L SS EPKQNVKLVR+DYWVE+ E GIHF+ N L
Sbjct: 119 PNLLIMCCKPEKSASEQQGQQSLENGLHSSGEPKQNVKLVRVDYWVERAETGIHFEDNVL 178

Query: 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVY 237
           HTDNQIRRARCWFPC+DDT+Q CCYDLEFTV+ NL+AVS GSLLYQVLSKDDPPRKTYVY
Sbjct: 179 HTDNQIRRARCWFPCMDDTSQCCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVY 238

Query: 238 RLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLD 297
           +L+VPV+A+WI LAVAPFEVLPD H  L+S++CLPAN+ K+ NTV FFH+AFSHYE YL 
Sbjct: 239 KLNVPVTARWIQLAVAPFEVLPDRHSGLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLS 298

Query: 298 AKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQW 357
           A FPFGSYKQVF+APEMA+SS T GA+M IFSSQIL+DEKVIDQ IDT IKL++ALARQW
Sbjct: 299 ASFPFGSYKQVFIAPEMAISSLTLGASMSIFSSQILFDEKVIDQTIDTRIKLAYALARQW 358

Query: 358 FGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALS 417
           FGV+I+PE PNDEWLLDGLAGFLTDSF+K+FLGNNEARYRRYKANCAVCKADDSGATALS
Sbjct: 359 FGVFISPEAPNDEWLLDGLAGFLTDSFVKRFLGNNEARYRRYKANCAVCKADDSGATALS 418

Query: 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS-PVR 476
           SSASCKDLYGTQCIG++GKIRS KSVAILQMLEKQMG   FRKILQ I+ RAQ  +  +R
Sbjct: 419 SSASCKDLYGTQCIGLYGKIRSWKSVAILQMLEKQMGPESFRKILQTIVFRAQDTTRSLR 478

Query: 477 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536
           TLSTKEFRHFANKVGNLERPFLKEFFPRWVG+CGCPVLR G SYNKRKN+VELAVLR CT
Sbjct: 479 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGSCGCPVLRAGLSYNKRKNLVELAVLRGCT 538

Query: 537 VKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCH 596
             PD+ T VL+ N DSENR+ DIGWPGMMSIRVHELDGMYDHPILPMAG+ WQLLEIQCH
Sbjct: 539 AAPDTNTMVLNGNIDSENREVDIGWPGMMSIRVHELDGMYDHPILPMAGETWQLLEIQCH 598

Query: 597 SKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP 656
           SKLAARR  KPKKGSKPDG DDNGD V  +DMRS+ ESPL W+R DPE+EYLAEIHFNQP
Sbjct: 599 SKLAARRFQKPKKGSKPDGSDDNGD-VPAVDMRSNTESPLLWLRVDPELEYLAEIHFNQP 657

Query: 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 716
            QMWINQLE+D DVVAQAQAIA LEALP LSF+VVN LNNFLSDSKAFWRVRIEAA+ALA
Sbjct: 658 AQMWINQLERDKDVVAQAQAIATLEALPQLSFSVVNALNNFLSDSKAFWRVRIEAAFALA 717

Query: 717 NTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN 776
           NTASEETDWAGLLHLVKFYKSRRFD NIGLP+PNDF DF EYFVLEAIPHA+AMVRAAD 
Sbjct: 718 NTASEETDWAGLLHLVKFYKSRRFDANIGLPKPNDFHDFPEYFVLEAIPHAIAMVRAADK 777

Query: 777 KSPREAVEFVLQLLKVMD 794
           KSPREAVEFVLQLLK  D
Sbjct: 778 KSPREAVEFVLQLLKYND 795

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455844|ref|XP_002273351.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132980|ref|XP_002321457.1| predicted protein [Populus trichocarpa] gi|222868453|gb|EEF05584.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356513902|ref|XP_003525647.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356563105|ref|XP_003549806.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356563107|ref|XP_003549807.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449516818|ref|XP_004165443.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439379|ref|XP_004137463.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297842145|ref|XP_002888954.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297334795|gb|EFH65213.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22330618|ref|NP_177536.2| TBP-associated factor 2 [Arabidopsis thaliana] gi|20856938|gb|AAM26691.1| At1g73960/F2P9_17 [Arabidopsis thaliana] gi|332197409|gb|AEE35530.1| TBP-associated factor 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017623001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (1256 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query794
cd09839507 cd09839, M1_TAF2, TATA binding protein (TBP) assoc 0.0
cd09595407 cd09595, M1, Peptidase M1 family contains aminopep 2e-22
cd09603415 cd09603, M1_APN_4, Peptidase M1 family Aminopeptid 5e-21
COG0308 859 COG0308, PepN, Aminopeptidase N [Amino acid transp 2e-13
cd09602438 cd09602, M1_APN_3, Peptidase M1 family containing 7e-10
pfam01433390 pfam01433, Peptidase_M1, Peptidase family M1 2e-07
pfam1364688 pfam13646, HEAT_2, HEAT repeats 2e-04
TIGR02412831 TIGR02412, pepN_strep_liv, aminopeptidase N, Strep 4e-04
cd09604435 cd09604, M1_APN_5, Peptidase M1 family containing 9e-04
cd09599442 cd09599, M1_LTA4H, Peptidase M1 family contains le 0.003
>gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2 Back     alignment and domain information 
 Score =  578 bits (1493), Expect = 0.0
 Identities = 199/533 (37%), Positives = 286/533 (53%), Gaps = 54/533 (10%)

Query: 20  VVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
            V HQK+ +SID  +  I GYTEL I     ++  + L+A+   I SV V+GEP +F Y 
Sbjct: 1   KVLHQKVEISIDFFRRSIIGYTELTILPLSKNLRQIRLNAKQCRILSVEVNGEPAKFTYN 60

Query: 78  PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQ 137
               Q +  ++ W+S++     A+DA+ +             LLI+  K  +        
Sbjct: 61  DP-TQELCRDEPWKSVLQH---ASDASLSAVSYVDLDANNGELLISVPKEVR-------- 108

Query: 138 MNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG--------NALHTDNQI-RRARC 188
                        +Q V  VRID+ VE+ + G+HF G          + T N I   ARC
Sbjct: 109 ---------KLVDEQKVLRVRIDFSVEQPKGGLHFVGPDPEAERYPHVFTYNSIHGSARC 159

Query: 189 WFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248
           WFPC+DD +Q C ++LEFTV  N++AVS+G LL QV   +D  +KTY Y L VP +A+ I
Sbjct: 160 WFPCVDDPSQLCTWELEFTVPANMVAVSSGDLLEQVYDTEDMRKKTYHYALTVPTAAQNI 219

Query: 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV 308
            LAV PFE+L D H   ++H CLP  + ++ NT  + H AF  +E YL  +FPF SYKQV
Sbjct: 220 GLAVGPFEILVDPHAHEITHFCLPGLLPELKNTTSYLHEAFEFFEEYLSCRFPFSSYKQV 279

Query: 309 FLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPN 368
           F+  E A   +++ A++ IFSS +LY E +IDQ  DT  KL++ALA QWFG +I+PE  +
Sbjct: 280 FV-DEAAEDVTSY-ASLSIFSSNLLYPEDIIDQTYDTRRKLAYALASQWFGCFISPEAWS 337

Query: 369 DEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKD---- 424
           DEWLL G+AG++T  F+KK  GNNE R+R  K    VC+ D      L            
Sbjct: 338 DEWLLKGIAGYITGLFVKKLFGNNEYRFRIKKELDRVCEYDIKRPGILLDPIILPGKLPL 397

Query: 425 ----LYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS------- 473
                +   C  ++G+  + K+  +L+MLE+++G   F ++L  I+SRA  AS       
Sbjct: 398 NPDPKHPHTCSPLYGEFMALKAHLVLRMLERRIGKESFLQVLNKILSRALQASQQKTQSG 457

Query: 474 --PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRK 524
                 LST+ F     KV       LK FF +WV   GCP  R+ F +N+++
Sbjct: 458 DWSQMLLSTESFFKTCEKV---SGKELKVFFQQWVYGSGCPKFRVSFRFNRKR 507

This family includes TATA binding protein (TBP) associated factor 2 (TAF2, TBP-associated factor TAFII150, transcription initiation factor TFIID subunit 2, RNA polymerase II TBP-associated factor subunit B), and has homology to the aminopeptidase N (APN) subfamily, belonging to the M1 gluzincin family. TAF2 is part of the TFIID multidomain subunit complex essential for transcription of most protein-encoded genes by RNA polymerase II. TAF2 is known to interact with the initiator element (Inr) found at the transcription start site of many genes, thus possibly playing a key role in promoter binding as well as start-site selection. Image analysis has shown TAF2 to form a complex with TAF1 and TBP, inferring its role in promoter recognition. Peptidases in the M1 family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. TAF2, however, does not seem to contain any of the active site residues. Length = 507
>gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and leukotriene A4 hydrolase Back     alignment and domain information
>gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N Back     alignment and domain information
>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|189009 cd09602, M1_APN_3, Peptidase M1 family containing Aminopeptidase N Back     alignment and domain information
>gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1 Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial Aminopeptidase N Back     alignment and domain information
>gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4 hydrolase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 794
KOG1932 1180 consensus TATA binding protein associated factor [ 100.0
KOG1046 882 consensus Puromycin-sensitive aminopeptidase and r 100.0
PRK14015 875 pepN aminopeptidase N; Provisional 100.0
TIGR02412 831 pepN_strep_liv aminopeptidase N, Streptomyces livi 100.0
TIGR02414 863 pepN_proteo aminopeptidase N, Escherichia coli typ 100.0
TIGR02411601 leuko_A4_hydro leukotriene A-4 hydrolase/aminopept 100.0
COG0308 859 PepN Aminopeptidase N [Amino acid transport and me 100.0
PF01433390 Peptidase_M1: Peptidase family M1 This is family M 100.0
KOG1047613 consensus Bifunctional leukotriene A4 hydrolase/am 100.0
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 98.92
COG3975558 Predicted protease with the C-terminal PDZ domain 98.6
PF11838 324 ERAP1_C: ERAP1-like C-terminal domain; InterPro: I 95.95
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.6
PF07607128 DUF1570: Protein of unknown function (DUF1570); In 95.14
PF10460366 Peptidase_M30: Peptidase M30; InterPro: IPR019501 94.96
PF05299122 Peptidase_M61: M61 glycyl aminopeptidase; InterPro 94.59
KOG1932 1180 consensus TATA binding protein associated factor [ 94.58
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 93.61
PRK09687280 putative lyase; Provisional 92.56
PRK09687280 putative lyase; Provisional 92.45
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 87.18
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 86.83
>KOG1932 consensus TATA binding protein associated factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-131  Score=1113.11  Aligned_cols=743  Identities=39%  Similarity=0.639  Sum_probs=598.1

Q ss_pred             CCCCCCCCC----cCCCCCCCCeEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcceEEEeccCceeeEEEEcCeeee
Q 003808            1 MAKPRKPKN----EETKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE   73 (794)
Q Consensus         1 ~~~~~~~~~----~~~~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~~~~l~I~~v~v~g~~~~   73 (794)
                      |++.+++++    ++..+++++..++||+|+|+ ||+.++++.|.++|+|.+  +++..|.|||++|.|.+|.|+|.+..
T Consensus         3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~   82 (1180)
T KOG1932|consen    3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK   82 (1180)
T ss_pred             cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence            444444444    55567777788999999999 999999999999999984  67999999999999999999999999


Q ss_pred             eeeCCCCcccchhhhhccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCCC
Q 003808           74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN  153 (794)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~  153 (794)
                      |.|.++....+..+ .|..+. .+..........|...  ..+.|+|.|.++++....  +.+               ..
T Consensus        83 f~y~d~~q~~~~~~-~~~~~l-~~~s~~~~~~~~y~~l--~~~~g~L~I~ipk~~~~~--~ee---------------~~  141 (1180)
T KOG1932|consen   83 FIYNDPTQNDCTDE-IWQRVL-DPASQSHFLAVQYEDL--DEDNGELLIKIPKESKKV--GEE---------------LK  141 (1180)
T ss_pred             eeecchhhhhhhhh-hhhhhh-hhhhhhhhHHHhhhcc--ccCCCeEEEEcCchhhhh--hhh---------------cc
Confidence            99998754444222 222111 0111111122223221  223678999876542111  110               01


Q ss_pred             ceEEEEEEEEeccCcceEEEec---------eEeccccc--CCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEcCcccc
Q 003808          154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY  222 (794)
Q Consensus       154 ~~~~~~~y~~~~~~~G~~f~~~---------~~~T~~e~--~~Ar~wfPC~D~p~~katf~l~i~~p~~~~avsng~l~~  222 (794)
                      ...++|+|.+.+|..|++|++.         +++|.+.+  .+||+||||+|+++.+|||+|++++|++++++++|++.+
T Consensus       142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~  221 (1180)
T KOG1932|consen  142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE  221 (1180)
T ss_pred             ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence            2347799999999999999764         34554433  368999999999999999999999999999999999999


Q ss_pred             eeeccCCCCceEEEEecCCCCcceeeEEEEeeceEeecCCCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 003808          223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF  302 (794)
Q Consensus       223 ~~~~~~~~~~~~~~f~~t~p~s~y~iafavg~f~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~  302 (794)
                      ++.++ |.+++|++|..+.|+++..||||||+|+.+..+.+..+++||+|+..+.+++++-.+.++++|||++||..|||
T Consensus       222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF  300 (1180)
T KOG1932|consen  222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF  300 (1180)
T ss_pred             eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence            99876 78899999999999999999999999999988888999999999999999999999999999999999988999


Q ss_pred             CCccEEEECCCCcccccccccchhhhccccccCcccchhhhHHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHH
Q 003808          303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD  382 (794)
Q Consensus       303 ~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~~~~~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~  382 (794)
                      +.|++||||..+..-  ...++|.++++++||+.+++|+.+.++..+|..||.||||+++||..|+|.||.+|+|.||..
T Consensus       301 ~~~k~VFvd~~~~~i--~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~  378 (1180)
T KOG1932|consen  301 SCYKTVFVDEAAVEI--SSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG  378 (1180)
T ss_pred             ceeeEEEecCCccee--eecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence            999999998643222  233479999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCchhHHHHHHHhhcceeeecc-CCCcccCCCCccccCCCCcccccccceeeehHHHHHHHHHHhh----chHH
Q 003808          383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF  457 (794)
Q Consensus       383 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~l----G~~~  457 (794)
                      +++++++|+|+|||+.++.+++++..|. .++..+..     +++++.   .|    -.|+++.+|.+.+++    |.=.
T Consensus       379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~  446 (1180)
T KOG1932|consen  379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG  446 (1180)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence            9999999999999999999999988776 34444431     111110   01    245666666655554    2233


Q ss_pred             HHHHHHHHHHhhcCCC-CCCCCCHHHHHHHHHHhcCCCcccHHhHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeecC
Q 003808          458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT  536 (794)
Q Consensus       458 F~~~L~~yl~~~~~~~-~~~~~st~~f~~~~e~~~~~~~~dl~~f~~~Wv~~~G~P~l~v~~~~~~~~~~v~l~~~q~~~  536 (794)
                      ....+++.+...+.++ .+...+.+.|.++++.++.   ..++.||++|+++.|+|.+.+.+.||++++.|++.+.|.+.
T Consensus       447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~  523 (1180)
T KOG1932|consen  447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR  523 (1180)
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence            4444555555554444 1122344555555555542   12589999999999999999999999999999999999654


Q ss_pred             CCCCCCCc-ccc-----CCCCCC-C---CCCCCCCcceeEEEEEecCCcccccccccCCCcceEEEeeecccchhhhhcC
Q 003808          537 VKPDSRTP-VLS-----SNTDSE-N---RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK  606 (794)
Q Consensus       537 ~~~~~~~~-~~~-----~~~~~~-~---~~~~~~~~~pltiri~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~~r~~k  606 (794)
                      ........ +++     ...+.+ .   ..+...|+||||||+||.||+|+|++ +| ++.|++.|||||||   +|.+|
T Consensus       524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k  598 (1180)
T KOG1932|consen  524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK  598 (1180)
T ss_pred             hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence            33322111 110     011111 1   11224699999999999999999987 34 56699999999999   45577


Q ss_pred             CCCCCCCCCCCCCCCccccccccccCCCCeeEEEecCCCceEEEEcccCcHHHHHHHHhhcCChHHHHHHHHHHHcCCCC
Q 003808          607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL  686 (794)
Q Consensus       607 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir~D~~~~~l~~v~~~~~~~m~~~qL~~d~dv~aq~eai~~l~~~~~~  686 (794)
                      +||.+..+|+|++.| ++.+|    .++|++|||+|||++|||+++++||++||++||++||||+||+|||++|...|+.
T Consensus       599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~  673 (1180)
T KOG1932|consen  599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST  673 (1180)
T ss_pred             CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence            888888899988877 65654    4899999999999999999999999999999999999999999999999999765


Q ss_pred             chhHHHHHHHHhccCcchhHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003808          687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH  766 (794)
Q Consensus       687 ~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~~g~~~l~~~f~~~~~~~~~~i~~~n~f~~~~~y~~~~~i~~  766 (794)
                        ..+++|+|+|.|+|||||||++||.|||++++++.+|.|++||+++|+++||+.+++|||||||+||++|||||+||.
T Consensus       674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~  751 (1180)
T KOG1932|consen  674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV  751 (1180)
T ss_pred             --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence              456999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccCCCCChHHHHHHHHHhhhccC
Q 003808          767 AVAMVRAADNKSPREAVEFVLQLLKVMD  794 (794)
Q Consensus       767 a~~~~r~~~~~~p~~~~~fl~~~l~~nd  794 (794)
                      |||.+|+.+|+||.+|++||||||||||
T Consensus       752 a~a~lR~~~g~cp~~V~~FlLdLlkyND  779 (1180)
T KOG1932|consen  752 AFASLRGREGKCPKEVKAFLLDLLKYND  779 (1180)
T ss_pred             HHHHhccccCCChHHHHHHHHHHhhccc
Confidence            9999999999999999999999999998

>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14015 pepN aminopeptidase N; Provisional Back     alignment and domain information
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type Back     alignment and domain information
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase Back     alignment and domain information
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification Back     alignment and domain information
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only] Back     alignment and domain information
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G [] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria Back     alignment and domain information
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1932 consensus TATA binding protein associated factor [Transcription] Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query794
3cia_A605 Crystal Structure Of Cold-Aminopeptidase From Colwe 5e-07
4e36_A 967 Crystal Structure Of The Human Endoplasmic Reticulu 7e-06
3se6_A 967 Crystal Structure Of The Human Endoplasmic Reticulu 1e-05
3mdj_A 921 Er Aminopeptidase, Erap1, Bound To The Zinc Aminope 2e-05
4fyq_A 903 Human Aminopeptidase N (Cd13) Length = 903 4e-05
2yd0_A 897 Crystal Structure Of The Soluble Domain Of Human En 6e-05
3qnf_A 954 Crystal Structure Of The Open State Of Human Endopl 7e-05
3q7j_A780 Engineered Thermoplasma Acidophilum F3 Factor Mimic 1e-04
4f5c_A 959 Crystal Structure Of The Spike Receptor Binding Dom 1e-04
4fke_A 909 Crystal Structure Of Porcine Aminopeptidase-N Lengt 2e-04
4h5h_A 908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-04
4hol_A 908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-04
1z1w_A780 Crystal Structures Of The Tricorn Interacting Facor 2e-04
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia Psychrerythraea Length = 605 Back     alignment and structure 
Iteration: 1

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 119/349 (34%), Gaps = 45/349 (12%)
Query: 177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKT-- 234
           L + NQ   AR W P  D  + R  Y    T  ++L+A         V+S ++ P     
Sbjct: 141 LFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLA---------VMSANNEPGTERD 191
Query: 235 --YVYRLDVPVSAKWITLAVAPFEVLPDHHQS--LMSHICLPANVSKIHNTVEFFHNAFS 290
             Y + +   +    I + V   E     HQ+        L A V++  +T      A  
Sbjct: 192 GDYFFSMPQAIPPYLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQ 251
Query: 291 HYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLS 350
            Y      K+ +G Y  + L P              I  + +  D+ +++        ++
Sbjct: 252 MY-----GKYRWGRYDLLMLPPSFPFGGMENPRLSFITPTVVAGDKSLVNL-------IA 299
Query: 351 FALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADD 410
             LA  W G  +T E   D WL +G   ++ +  ++   G + A   +         A D
Sbjct: 300 HELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQ------ALGAQD 353
Query: 411 SGATALSSSASCKDLY----GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRK-ILQNI 465
             A  L   AS   LY    G      F  +   K    L  LE++ G   F   +L+  
Sbjct: 354 LNAEILELDASDTQLYIDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYF 413
Query: 466 ISRAQGASPVRTLSTKEFRHF--ANKVGNLERPFLKEFFPRWVGTCGCP 512
            S A      ++L T  F  +  AN                W+   G P
Sbjct: 414 DSHA-----FQSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLP 457
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Variant N392k Length = 967 Back     alignment and structure
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Length = 967 Back     alignment and structure
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase Inhibitor, Bestatin Length = 921 Back     alignment and structure
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13) Length = 903 Back     alignment and structure
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 897 Back     alignment and structure
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 954 Back     alignment and structure
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development Length = 780 Back     alignment and structure
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of A Porcine Respiratory Coronavirus In Complex With The Pig Aminopeptidase N Ectodomain Length = 959 Back     alignment and structure
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Length = 909 Back     alignment and structure
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Cleaved Poly-Alanine Length = 908 Back     alignment and structure
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Poly- Alanine Length = 908 Back     alignment and structure
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations Length = 780 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query794
3b7s_A616 Leukotriene A-4 hydrolase; transition state, analo 2e-21
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 2e-18
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 3e-15
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 1e-04
3b34_A 891 Aminopeptidase N; protease, hydrolase, thermolysin 4e-14
2gtq_A 867 Aminopeptidase N; alanine aminopeptidase, M1 famil 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
3ebh_A 889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 1e-09
3se6_A 967 Endoplasmic reticulum aminopeptidase 2; thermolysi 7e-06
2xdt_A 897 Endoplasmic reticulum aminopeptidase 1; glycoprote 9e-06
1z5h_A780 Tricorn protease interacting factor F3; zinc amino 2e-05
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616 Back     alignment and structure
 Score = 98.3 bits (245), Expect = 2e-21
 Identities = 63/419 (15%), Positives = 132/419 (31%), Gaps = 38/419 (9%)

Query: 143 KLDSSAEPKQNVKLVRIDYWVEKVEVGIHF------DGNA---LHTDNQIRRARCWFPCI 193
            L  +    Q +  + I +        + +       G     L +  Q    R   PC 
Sbjct: 95  SLPIALSKNQEIV-IEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQ 153

Query: 194 DDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253
           D  + +  Y  E +V + L+A+ +     +    +DP RK Y +   VP+    I L V 
Sbjct: 154 DTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVG 213

Query: 254 PFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE 313
             E      ++          V K         +     E  L   + +G Y  + L P 
Sbjct: 214 ALESRQIGPRT--LVWSEKEQVEKSAYEFSETESMLKIAE-DLGGPYVWGQYDLLVLPPS 270

Query: 314 MAVSSSTFGAAMG----IF--SSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELP 367
                  +G  M      F   + +  D+ +     +        ++  W G  +T +  
Sbjct: 271 FP-----YG-GMENPCLTFVTPTLLAGDKSL----SNVIAHQ---ISHSWTGNLVTNKTW 317

Query: 368 NDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYG 427
           +  WL +G   +L      +  G     +        +  +  +       +    DL  
Sbjct: 318 DHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTD 377

Query: 428 TQCIGIFGKIRSCKSVAILQMLEKQM-GSNFFRKILQNIISRAQGASPVRTLSTKEFR-H 485
                 +  +   K  A+L  LE+ + G   F   L+  + +    S    ++T +++  
Sbjct: 378 IDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDF 433

Query: 486 FANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTP 544
             +   +      +  +  W+ + G P ++  +        + L+       + D  + 
Sbjct: 434 LYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSF 492
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605 Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Length = 891 Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Length = 867 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Length = 889 Back     alignment and structure
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967 Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query794
3se6_A 967 Endoplasmic reticulum aminopeptidase 2; thermolysi 100.0
2xdt_A 897 Endoplasmic reticulum aminopeptidase 1; glycoprote 100.0
4fke_A 909 Aminopeptidase N; zinc aminopeptidase, hydrolase; 100.0
3ebh_A 889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 100.0
3b34_A 891 Aminopeptidase N; protease, hydrolase, thermolysin 100.0
1z5h_A 780 Tricorn protease interacting factor F3; zinc amino 100.0
2gtq_A 867 Aminopeptidase N; alanine aminopeptidase, M1 famil 100.0
3u9w_A608 Leukotriene A-4 hydrolase; hydrolase-hydrolase inh 100.0
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 100.0
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 100.0
4fgm_A597 Aminopeptidase N family protein; structural genomi 99.9
3rjo_A 419 Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd 98.7
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 91.36
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 90.48
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 88.85
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 88.21
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 88.07
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 86.46
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 85.44
1oyz_A 280 Hypothetical protein YIBA; structural genomics, PS 84.58
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-82  Score=769.83  Aligned_cols=657  Identities=15%  Similarity=0.185  Sum_probs=473.7

Q ss_pred             CcCCCCCCCCeEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCee----------eee-ee
Q 003808            9 NEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEP----------TEF-EY   76 (794)
Q Consensus         9 ~~~~~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~~~~l~I~~v~v~g~~----------~~~-~~   76 (794)
                      +-..++....++|.||+|.|++|+++.+|+|+|+|++.+ .+++.|+||+++|+|.+|+|++..          +.. .+
T Consensus        63 p~~~~RLP~~v~P~hY~L~L~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~I~~v~v~~~~~~~~~~~~~~~~~~~~  142 (967)
T 3se6_A           63 PWQELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSY  142 (967)
T ss_dssp             SCCCSSCCTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCCSEEEEECSSCEEEEEEEEECC---CCSSCEECEEEEE
T ss_pred             CcccccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEEEcCCCEEEEECCCCEEEEEEEeccCCcccccccceeeeEEe
Confidence            334567788999999999999999999999999999987 468999999999999999986321          111 00


Q ss_pred             CCCCcccchhhhhccccCCCCCcHHHHHHHHHHHhhcccCCCCeeEeccCCCCCchhhHHhhhcccCCCCCCccCCC-ce
Q 003808           77 YPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VK  155 (794)
Q Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~  155 (794)
                      .                                      ....|.|.++.   .++.|. .+++  .+.|+|.++.. .|
T Consensus       143 ~--------------------------------------~~~~l~i~l~~---~L~~g~-~~~l--~i~y~g~~~~~~~G  178 (967)
T 3se6_A          143 P--------------------------------------AHEQIALLVPE---KLTPHL-KYYV--AMDFQAKLGDGFEG  178 (967)
T ss_dssp             G--------------------------------------GGTEEEEECSS---CCCTTC-CEEE--EEEEEEECBSSSSE
T ss_pred             c--------------------------------------CCCEEEEEcCC---ccCCCC-eEEE--EEEEEEecCCCccc
Confidence            0                                      01136665543   232222 2334  37888888764 59


Q ss_pred             EEEEEEEEeccCcceEEEeceEecccccCCcceEEeeCCCCCCeeEEEEEEEEeCCeEEEEcCcccceeeccCCCCceEE
Q 003808          156 LVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTY  235 (794)
Q Consensus       156 ~~~~~y~~~~~~~G~~f~~~~~~T~~e~~~Ar~wfPC~D~p~~katf~l~i~~p~~~~avsng~l~~~~~~~~~~~~~~~  235 (794)
                      +|++.|...   +|.  ..++++|||||.+||+||||||+|++||+|+|+|++|++|+|+|||++.++..  .+++++++
T Consensus       179 ~y~s~y~~~---~g~--~~~~~~Tq~ep~~AR~~FPC~DeP~~KAtf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~  251 (967)
T 3se6_A          179 FYKSTYRTL---GGE--TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE--LEGGLLED  251 (967)
T ss_dssp             EEEEEEECT---TSC--EEEEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEECTTCEEEESSCEEEEEE--CTTSCEEE
T ss_pred             eeeeeeEcC---CCc--eEEEEEEecccCCCCeEEEecCCcCceeEEEEEEEECCCcEEEeCCCccccee--cCCCeEEE
Confidence            999998642   342  25688999999999999999999999999999999999999999999976543  35688999


Q ss_pred             EEecCCCCcceeeEEEEeeceEeecC--CCCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECCC
Q 003808          236 VYRLDVPVSAKWITLAVAPFEVLPDH--HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE  313 (794)
Q Consensus       236 ~f~~t~p~s~y~iafavg~f~~~~~~--~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~  313 (794)
                      +|..++|||+|++||+||+|+.++..  .+.++++|++|+..++++++++.+.++++|||++||+||||+||++|++|++
T Consensus       252 ~F~~t~pmstYLva~~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf  331 (967)
T 3se6_A          252 HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDF  331 (967)
T ss_dssp             EECCCCSBCGGGCCEEEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSC
T ss_pred             EEecCCCccceeEEEEEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccEEEecCC
Confidence            99999999999999999999998753  4678999999999999999999999999999999999999999999999998


Q ss_pred             Ccccccccccchhhh-ccccccCcccchhhh--HHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 003808          314 MAVSSSTFGAAMGIF-SSQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLG  390 (794)
Q Consensus       314 ~~~~~~~~gagl~~~-~~~lL~~~~~~~~~~--~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G  390 (794)
                      ..++||+|  ||++| ++.+|+++...+...  ....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|
T Consensus       332 ~~GaMEn~--Glity~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~p  409 (967)
T 3se6_A          332 APGAMENW--GLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYP  409 (967)
T ss_dssp             SSSEECCT--TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCG
T ss_pred             CCcccccC--CccccchhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHHhcc
Confidence            88999999  78999 566889887543322  23458999999999999999999999999999999999999999988


Q ss_pred             chhHHHHHHHhhcceeeeccCCCcccCCCCcccc----CC-CCcccccccceeeehHHHHHHHHHHhhchHHHHHHHHHH
Q 003808          391 NNEARYRRYKANCAVCKADDSGATALSSSASCKD----LY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI  465 (794)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~-~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~L~~y  465 (794)
                      .....-........        ++..++..+.++    +. +.++..+|+.++|.||++|||||+..||++.|+++|+.|
T Consensus       410 ~~~~~~~~~~~~~~--------al~~D~~~~~~Pi~~~v~~~~~i~~~Fd~i~Y~KGa~vL~mL~~~lG~e~F~~gLr~Y  481 (967)
T 3se6_A          410 ELQFDDYFLNVCFE--------VITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQY  481 (967)
T ss_dssp             GGCHHHHHHHHHHH--------HHTTTTSTTCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHH--------HHHhhcccCCCCceeecCCHHHHHHhcchhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            76531000111111        111111111122    21 234556899999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCHHHHHHHHHHhcC------------------------CCcccHHhHHHhhhcCCCccEEEEEEEEe
Q 003808          466 ISRAQGASPVRTLSTKEFRHFANKVGN------------------------LERPFLKEFFPRWVGTCGCPVLRMGFSYN  521 (794)
Q Consensus       466 l~~~~~~~~~~~~st~~f~~~~e~~~~------------------------~~~~dl~~f~~~Wv~~~G~P~l~v~~~~~  521 (794)
                      ++++++++    ++++||++.++++..                        .++.||++||++|+.|+|+|+|+|+++  
T Consensus       482 l~~~~~~n----at~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~~q~G~Pvl~V~~~--  555 (967)
T 3se6_A          482 LKKFSYRN----AKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQD--  555 (967)
T ss_dssp             HHHHTTEE----ECHHHHHHHHHCC-------------------------CCCCCCHHHHHHHHHHSCSCEEEEEEEE--
T ss_pred             HHHhccCC----CCHHHHHHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHhcCCCCcEEEEEec--
Confidence            99999996    689999998887521                        146799999999999999999999873  


Q ss_pred             ccCcEEEEEEEeecCCCCCCCCccccCCCCCCCCCCCCCCcceeEEEEEecCCcccccccccCCCcceEEEeeecccchh
Q 003808          522 KRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAA  601 (794)
Q Consensus       522 ~~~~~v~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pltiri~e~dg~~~~~~~~~~~~~~~~~~i~~~~k~~~  601 (794)
                        ++.+.|+|+|+.......       .++.........|++|+++.... +++....+  +. ..-..           
T Consensus       556 --~~~~~l~Q~rf~~~~~~~-------~~~~~~~~~~~~W~IPl~~~~~~-~~~~~~~~--l~-~~~~~-----------  611 (967)
T 3se6_A          556 --GCSLRLQQERFLQGVFQE-------DPEWRALQERYLWHIPLTYSTSS-SNVIHRHI--LK-SKTDT-----------  611 (967)
T ss_dssp             --TTEEEEEEEECCCC------------------CCSCCCCCCEEEEESS-CCCCEEEC--CC-SSEEE-----------
T ss_pred             --CCEEEEEeeeecCCCCCC-------ccccccccCCceEEEEEEEEeCC-CCccceEE--ec-CCceE-----------
Confidence              457899999986421100       00000001245899999997643 22211111  00 00000           


Q ss_pred             hhhcCCCCCCCCCCCCCCCCccccccccccCCCCeeEEEecCCCceEEEEcccCc-HHHHHHHHhhcC---ChHH--HH-
Q 003808          602 RRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVA--QA-  674 (794)
Q Consensus       602 ~r~~k~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~wir~D~~~~~l~~v~~~~~-~~m~~~qL~~d~---dv~a--q~-  674 (794)
                                           +       ...++.+||.+|+++.++|||+++.. +...+.+|+.++   ++..  |+ 
T Consensus       612 ---------------------i-------~~~~~~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li  663 (967)
T 3se6_A          612 ---------------------L-------DLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLI  663 (967)
T ss_dssp             ---------------------E-------ECSSCCSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHH
T ss_pred             ---------------------E-------eccCCCceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence                                 0       01123479999999999999966543 233467887665   3333  33 


Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHhccCcchhHHHHHHHHHHHhhccccccc--cch-HHHHHHHHhcCCCC---CCCCCC
Q 003808          675 QAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--AGL-LHLVKFYKSRRFDE---NIGLPR  748 (794)
Q Consensus       675 eai~~l~~~~~~~~~~~~~L~~~l~~~~~f~~vR~~Aa~aL~~~~~~~~~~--~g~-~~l~~~f~~~~~~~---~~~i~~  748 (794)
                      +.+.+|++....+....--|.+.|.+|+. |-|...|...|..+..-...-  ... ..+.++.++. ..|   ..+.. 
T Consensus       664 ~D~~~la~~g~~~~~~~l~l~~~l~~E~~-~~~w~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~lg~~-  740 (967)
T 3se6_A          664 HDVFQLVGAGRLTLDKALDMTYYLQHETS-SPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQY-FKPVIDRQSWS-  740 (967)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHTTGGGTCCC-HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHT-THHHHHHCCSS-
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-HHHHHHHcCCC-
Confidence            66778888777777666667899999875 788888888888764321100  001 1222222221 110   00111 


Q ss_pred             CCCCCChHHHHHHHHHHHHHhccccCCCCChHHHHHHHHHhhh
Q 003808          749 PNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK  791 (794)
Q Consensus       749 ~n~f~~~~~y~~~~~i~~a~~~~r~~~~~~p~~~~~fl~~~l~  791 (794)
                      ++  .+..+-.++..+...+|..  .+..|-.++.+.+.+.+.
T Consensus       741 ~~--~~~~~~~lR~~il~~ac~~--g~~~c~~~A~~~f~~~~~  779 (967)
T 3se6_A          741 DK--GSVWDRMLRSALLKLACDL--NHAPCIQKAAELFSQWME  779 (967)
T ss_dssp             CC--SCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred             CC--CcHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhhc
Confidence            12  2456666777777777777  455688888877766554
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A* Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Back     alignment and structure
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ... Back     alignment and structure
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Back     alignment and structure
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 794
d3b7sa2208 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-term 3e-14
d3b7sa3252 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase cat 1e-12
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 208 Back     information, alignment and structure

class: All beta proteins
fold: Leukotriene A4 hydrolase N-terminal domain
superfamily: Leukotriene A4 hydrolase N-terminal domain
family: Leukotriene A4 hydrolase N-terminal domain
domain: Leukotriene A4 hydrolase N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 3e-14
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 65/247 (26%)

Query: 17  SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEF 74
           S    +H  L  S+D  +  + G   L +     ++  + L  ++L IE V+++G+  ++
Sbjct: 14  SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKY 73

Query: 75  EYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQ 134
                  Q+ +      S+  +                                      
Sbjct: 74  ALGE--RQSYKGSPMEISLPIAL------------------------------------- 94

Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHF---------DGNALHTDNQIRR 185
                           K    ++ I +        + +         +   L +  Q   
Sbjct: 95  ---------------SKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIH 139

Query: 186 ARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245
            R   PC D  + +  Y  E +V + L+A+ +     +    +DP RK Y +   VP+  
Sbjct: 140 CRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 199

Query: 246 KWITLAV 252
             I L V
Sbjct: 200 YLIALVV 206
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query794
d3b7sa3252 Leukotriene A4 hydrolase catalytic domain {Human ( 100.0
d3b7sa2208 Leukotriene A4 hydrolase N-terminal domain {Human 100.0
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 87.08
d1oyza_ 276 Hypothetical protein YibA {Escherichia coli [TaxId 85.37
d1u4ga_298 Elastase {Pseudomonas aeruginosa [TaxId: 287]} 82.28
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-43  Score=365.87  Aligned_cols=237  Identities=14%  Similarity=0.214  Sum_probs=186.9

Q ss_pred             CCcEEEEEcCCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEECC-CCcccccccccchhhhccccccCcccchh
Q 003808          263 QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAP-EMAVSSSTFGAAMGIFSSQILYDEKVIDQ  341 (794)
Q Consensus       263 ~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~-~~~~~~~~~gagl~~~~~~lL~~~~~~~~  341 (794)
                      +..|++|++|+..+.++++++.++++|++||++|| ||||+||++|++|+ +..++|+++  |++++++.++..+..   
T Consensus         7 g~~vrv~~~p~~~~~~~~~l~~~~~~l~~~e~~~g-~YP~~k~d~v~~~~~~~~ggmE~~--~l~~~~~~~~~~~~~---   80 (252)
T d3b7sa3           7 GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLLAGDKS---   80 (252)
T ss_dssp             ETTEEEEECGGGHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGCCSSST---
T ss_pred             CCceEEEEccchHHHHHHHHHHHHHHHHHHHHhCC-CCCchhcCEEEeCCCccccccccc--eeeeecchhccccch---
Confidence            56899999999999999999999999999999998 99999999999964 345789988  677777666544332   


Q ss_pred             hhHHHHHHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHhcCchhHHHHHHHhhcceeeecc--CCCcccCCC
Q 003808          342 AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADD--SGATALSSS  419 (794)
Q Consensus       342 ~~~~~~~iaHElAHQWfG~~Vt~~~w~d~WL~EGfA~y~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~  419 (794)
                         ...+||||+|||||||+||++||+|+||+||||+|++.+++++.+|.+..++.............+  ....++...
T Consensus        81 ---~~~~iaHE~aHqWfG~~Vt~~~w~~~WL~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (252)
T d3b7sa3          81 ---LSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKL  157 (252)
T ss_dssp             ---TTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCGGGSS
T ss_pred             ---HHHHHHHHHHHHHHhhhceeccccchHhhccHHHHHHHHhhccccchhhhhhhhhhhhhhHHHHHhhhhccCCccee
Confidence               234799999999999999999999999999999999999999999988765433222211111111  111121111


Q ss_pred             CccccCCCCcccccccceeeehHHHHHHHHHHhhc-hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcCCCcccH
Q 003808          420 ASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFL  498 (794)
Q Consensus       420 ~~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~~~F~~~L~~yl~~~~~~~~~~~~st~~f~~~~e~~~~~~~~dl  498 (794)
                        .......+....|+.++|.||++||+||++.|| ++.|+++|+.|++++++++    +++++|.+.++++++   .++
T Consensus       158 --~~~~~~~~~~~~f~~~~Y~Kga~vl~mL~~~iG~~~~f~~~lr~yl~~~~~~~----~~~~df~~~l~~~~~---~~~  228 (252)
T d3b7sa3         158 --VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSYFK---DKV  228 (252)
T ss_dssp             --SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHHTG---GGH
T ss_pred             --eccccccchhhcccceeecchhHHHHHHHHHhccHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHhc---ccc
Confidence              011112233456888999999999999999999 5789999999999999985    799999999999874   577


Q ss_pred             HhH----HHhhhcCCCccEEEEE
Q 003808          499 KEF----FPRWVGTCGCPVLRMG  517 (794)
Q Consensus       499 ~~f----~~~Wv~~~G~P~l~v~  517 (794)
                      +.+    |++|++++|+|+|+|+
T Consensus       229 ~~~~~~~f~~W~~~~G~P~l~v~  251 (252)
T d3b7sa3         229 DVLNQVDWNAWLYSPGLPPIKPN  251 (252)
T ss_dssp             HHHTTSCHHHHHHCCSSCSSCCC
T ss_pred             chhhHhHHHHHhcCCCCCeeecc
Confidence            777    9999999999999885
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u4ga_ d.92.1.2 (A:) Elastase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure