Citrus Sinensis ID: 003820
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 793 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y4I1 | 1855 | Unconventional myosin-Va | yes | no | 0.699 | 0.299 | 0.396 | 1e-115 | |
| Q02440 | 1829 | Unconventional myosin-Va | yes | no | 0.699 | 0.303 | 0.387 | 1e-114 | |
| Q9QYF3 | 1828 | Unconventional myosin-Va | yes | no | 0.696 | 0.301 | 0.401 | 1e-114 | |
| Q99104 | 1853 | Unconventional myosin-Va | yes | no | 0.696 | 0.297 | 0.398 | 1e-114 | |
| P54697 | 2245 | Myosin-J heavy chain OS=D | yes | no | 0.798 | 0.281 | 0.343 | 1e-109 | |
| Q9NQX4 | 1742 | Unconventional myosin-Vc | no | no | 0.694 | 0.316 | 0.391 | 1e-105 | |
| Q9ULV0 | 1848 | Unconventional myosin-Vb | no | no | 0.702 | 0.301 | 0.371 | 1e-105 | |
| P21271 | 1818 | Unconventional myosin-Vb | no | no | 0.698 | 0.304 | 0.381 | 1e-105 | |
| P70569 | 1846 | Unconventional myosin-Vb | no | no | 0.699 | 0.300 | 0.377 | 1e-104 | |
| P08799 | 2116 | Myosin-2 heavy chain OS=D | no | no | 0.601 | 0.225 | 0.413 | 1e-104 |
| >sp|Q9Y4I1|MYO5A_HUMAN Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/577 (39%), Positives = 339/577 (58%), Gaps = 22/577 (3%)
Query: 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSF 61
+A + Y +Q I GVDDA++ +A ++ +S+ Q +F +LA +L LGNV F
Sbjct: 281 NADNFNYTKQGGSPVIEGVDDAKEMAHTRQACTLLGISESHQMGIFRILAGILHLGNVGF 340
Query: 62 TVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTR 121
T D ++ P E L +L+G D E+ L RK+ +T ++ ++ QAT+ R
Sbjct: 341 TSRDADSCTIPPKHEPLCIFCELMGVDYEEMCHWLCHRKLATATETYIKPISKLQATNAR 400
Query: 122 DALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANE 181
DALAK IYA LF W+V+ +N++L ++ I +LDIYGFE+F+ NSFEQFCINYANE
Sbjct: 401 DALAKHIYAKLFNWIVDNVNQALHSAVKQHS-FIGVLDIYGFETFEINSFEQFCINYANE 459
Query: 182 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241
+LQQ FN H+FKLEQEEY+++ I W +DF DN+ C+NL E K LG+L LLDEE P G
Sbjct: 460 KLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIESK-LGILDLLDEECKMPKG 518
Query: 242 TDLTFANKL-KQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIE 298
TD T+A KL HLN F R +K+F + H+A +V Y GFLEKN+D + + I+
Sbjct: 519 TDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIQHFADKVEYQCEGFLEKNKDTVFEEQIK 578
Query: 299 LLSSCSCH-LPQIF--------ASNMLSQSNKPVV-GPLYKAGG-----ADSQKLSVATK 343
+L S LP++F ++ S P+ P G A K +V +
Sbjct: 579 VLKSSKFKMLPELFQDDEKAISPTSATSSGRTPLTRTPAKPTKGRPGQMAKEHKKTVGHQ 638
Query: 344 FKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFP 403
F+ L LM+ L +TTPH++RCIKPN+F+ P +++ +QQLR CGVLE +RIS +GFP
Sbjct: 639 FRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFP 698
Query: 404 TRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGML 463
+R ++Q+F RY L+ + D +L + + + YQ G TK+FFRAGQ+ L
Sbjct: 699 SRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYL 758
Query: 464 EDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRA 522
E R L +R+Q RG R +R+ + +Q ++RG + R YA L+R +A
Sbjct: 759 EKLRADKLRAACIRIQKTIRGWLLRKKYLRMRKAAITMQRYVRGYQARC-YAKFLRRTKA 817
Query: 523 AVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVR 559
A +IQ+ + V R++ K + ++I++QS +RG+L R
Sbjct: 818 ATIIQKYWRMYVVRRRYKIRRAATIVLQSYLRGFLAR 854
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Processive actin-based motor that can move in large steps approximating the 36-nm pseudo-repeat of the actin filament. Involved in melanosome transport. May also be required for some polarization process involved in dendrite formation. Homo sapiens (taxid: 9606) |
| >sp|Q02440|MYO5A_CHICK Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9QYF3|MYO5A_RAT Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1 | Back alignment and function description |
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| >sp|Q99104|MYO5A_MOUSE Unconventional myosin-Va OS=Mus musculus GN=Myo5a PE=1 SV=2 | Back alignment and function description |
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| >sp|P54697|MYOJ_DICDI Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2 | Back alignment and function description |
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| >sp|Q9NQX4|MYO5C_HUMAN Unconventional myosin-Vc OS=Homo sapiens GN=MYO5C PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9ULV0|MYO5B_HUMAN Unconventional myosin-Vb OS=Homo sapiens GN=MYO5B PE=1 SV=3 | Back alignment and function description |
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| >sp|P21271|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2 | Back alignment and function description |
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| >sp|P70569|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1 | Back alignment and function description |
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| >sp|P08799|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 793 | ||||||
| 224083870 | 1173 | predicted protein [Populus trichocarpa] | 0.994 | 0.672 | 0.892 | 0.0 | |
| 224096506 | 1174 | predicted protein [Populus trichocarpa] | 0.994 | 0.672 | 0.880 | 0.0 | |
| 255565536 | 1181 | myosin vIII, putative [Ricinus communis] | 0.996 | 0.668 | 0.885 | 0.0 | |
| 297742765 | 1135 | unnamed protein product [Vitis vinifera] | 0.998 | 0.697 | 0.872 | 0.0 | |
| 225463689 | 1197 | PREDICTED: myosin-J heavy chain-like [Vi | 0.998 | 0.661 | 0.872 | 0.0 | |
| 147844473 | 1161 | hypothetical protein VITISV_032704 [Viti | 0.998 | 0.682 | 0.872 | 0.0 | |
| 356536431 | 1106 | PREDICTED: myosin-J heavy chain-like [Gl | 1.0 | 0.716 | 0.852 | 0.0 | |
| 356530262 | 1177 | PREDICTED: myosin-J heavy chain-like [Gl | 0.998 | 0.672 | 0.845 | 0.0 | |
| 356576949 | 1176 | PREDICTED: myosin-J heavy chain-like [Gl | 0.997 | 0.672 | 0.845 | 0.0 | |
| 449458801 | 1175 | PREDICTED: myosin-J heavy chain-like [Cu | 0.993 | 0.670 | 0.851 | 0.0 |
| >gi|224083870|ref|XP_002307152.1| predicted protein [Populus trichocarpa] gi|222856601|gb|EEE94148.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1475 bits (3818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 705/790 (89%), Positives = 752/790 (95%), Gaps = 1/790 (0%)
Query: 3 AKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFT 62
A EYKYLRQS+CY+I GVDDAE+FR V+EALDIVHVSKEDQESVFAMLAAVLWLGNVSF+
Sbjct: 382 ASEYKYLRQSNCYTITGVDDAERFRGVMEALDIVHVSKEDQESVFAMLAAVLWLGNVSFS 441
Query: 63 VIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRD 122
++DNENHVEP+ADEGL TVAKLIGC++GELKLALSTRKMRVGNDTIVQ L+LSQA DTRD
Sbjct: 442 IVDNENHVEPLADEGLTTVAKLIGCNVGELKLALSTRKMRVGNDTIVQKLSLSQAIDTRD 501
Query: 123 ALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANER 182
ALAKSIY+CLF+WLVEQ+NKSLAVGKRRTGRSISILDIYGFESF+RNSFEQFCINYANER
Sbjct: 502 ALAKSIYSCLFDWLVEQVNKSLAVGKRRTGRSISILDIYGFESFERNSFEQFCINYANER 561
Query: 183 LQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGT 242
LQQHFNRHLFKLEQEEYIQDGIDW KVDF+DN+DCLNLFEKKPLGLLSLLDEESTFPNGT
Sbjct: 562 LQQHFNRHLFKLEQEEYIQDGIDWTKVDFDDNQDCLNLFEKKPLGLLSLLDEESTFPNGT 621
Query: 243 DLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSS 302
DLTFANKLKQHLNSN CFRGER K+F+VSHYAGEV YDTTGFLEKNRDLLHLDSI+LLSS
Sbjct: 622 DLTFANKLKQHLNSNSCFRGERGKAFSVSHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSS 681
Query: 303 CSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHF 362
CSCHLPQIFASNML+QS KPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLE+TTPHF
Sbjct: 682 CSCHLPQIFASNMLTQSEKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLENTTPHF 741
Query: 363 IRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLES 422
IRCIKPNN QSPG YEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLES
Sbjct: 742 IRCIKPNNSQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLES 801
Query: 423 VA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCF 481
VA SQDPLS+SVAILHQF+ILPEMYQVGYTKLFFR GQIG+LEDTRN TLHGILRVQSCF
Sbjct: 802 VAYSQDPLSISVAILHQFDILPEMYQVGYTKLFFRTGQIGVLEDTRNHTLHGILRVQSCF 861
Query: 482 RGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN 541
RGHQAR L+EL+RGI LQSF+RGEKIRKEYA+ QRHRAAVVIQR IKS + +K K+
Sbjct: 862 RGHQARAYLRELKRGICVLQSFVRGEKIRKEYAVSQQRHRAAVVIQRHIKSTICGKKYKD 921
Query: 542 IKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAA 601
+ +SIMIQSVIRGWLVRR SGD+ LLKS +KGN+SDEVLVKASFLAELQRRVLKAEAA
Sbjct: 922 MHQASIMIQSVIRGWLVRRFSGDVGLLKSGATKGNESDEVLVKASFLAELQRRVLKAEAA 981
Query: 602 LREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSE 661
LREKEEEND+LHQRLQQYE+RWSEYE KMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSE
Sbjct: 982 LREKEEENDVLHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSE 1041
Query: 662 RNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAK 721
RNSDASVNASDE E+SWDTGSN +GQESN RPMSAGLSVISR+AEEF+QRSQVFGDDAK
Sbjct: 1042 RNSDASVNASDEREFSWDTGSNHRGQESNSARPMSAGLSVISRMAEEFEQRSQVFGDDAK 1101
Query: 722 FLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKK 781
FLVEVKSGQVEASLNPD+ELRRLKQMFEAWKKDYGSRLRETKVILNKLG+EEGA+DRVK+
Sbjct: 1102 FLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYGSRLRETKVILNKLGTEEGALDRVKR 1161
Query: 782 KWWGRRNSTR 791
KWWGRRNSTR
Sbjct: 1162 KWWGRRNSTR 1171
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096506|ref|XP_002310637.1| predicted protein [Populus trichocarpa] gi|222853540|gb|EEE91087.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255565536|ref|XP_002523758.1| myosin vIII, putative [Ricinus communis] gi|223536970|gb|EEF38607.1| myosin vIII, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297742765|emb|CBI35399.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225463689|ref|XP_002273898.1| PREDICTED: myosin-J heavy chain-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147844473|emb|CAN82090.1| hypothetical protein VITISV_032704 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356536431|ref|XP_003536741.1| PREDICTED: myosin-J heavy chain-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356530262|ref|XP_003533701.1| PREDICTED: myosin-J heavy chain-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356576949|ref|XP_003556592.1| PREDICTED: myosin-J heavy chain-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449458801|ref|XP_004147135.1| PREDICTED: myosin-J heavy chain-like [Cucumis sativus] gi|449503518|ref|XP_004162042.1| PREDICTED: myosin-J heavy chain-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 793 | ||||||
| TAIR|locus:2011922 | 1153 | VIIIA [Arabidopsis thaliana (t | 0.993 | 0.683 | 0.782 | 0.0 | |
| TAIR|locus:2162550 | 1220 | ATM2 "myosin 2" [Arabidopsis t | 0.974 | 0.633 | 0.515 | 1.4e-204 | |
| UNIPROTKB|F1LV42 | 1853 | F1LV42 "Uncharacterized protei | 0.388 | 0.166 | 0.442 | 1.6e-110 | |
| RGD|3143 | 1828 | Myo5a "myosin VA" [Rattus norv | 0.388 | 0.168 | 0.442 | 4e-110 | |
| UNIPROTKB|F1NK42 | 1853 | MYO5A "Unconventional myosin-V | 0.387 | 0.165 | 0.425 | 6e-110 | |
| UNIPROTKB|F1NK41 | 1857 | MYO5A "Unconventional myosin-V | 0.387 | 0.165 | 0.425 | 6.1e-110 | |
| UNIPROTKB|Q02440 | 1829 | MYO5A "Unconventional myosin-V | 0.387 | 0.167 | 0.424 | 2.4e-109 | |
| UNIPROTKB|F1NQB6 | 1832 | MYO5A "Unconventional myosin-V | 0.387 | 0.167 | 0.424 | 2.4e-109 | |
| UNIPROTKB|F1RZD2 | 1896 | MYO5A "Uncharacterized protein | 0.447 | 0.187 | 0.4 | 4.3e-105 | |
| TAIR|locus:2125929 | 1522 | XI-I [Arabidopsis thaliana (ta | 0.674 | 0.351 | 0.400 | 7.9e-105 |
| TAIR|locus:2011922 VIIIA [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3176 (1123.1 bits), Expect = 0., P = 0.
Identities = 620/792 (78%), Positives = 686/792 (86%)
Query: 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSF 61
SAK+Y YL+QS+CYSINGVDDAE+F V EALDIVHVSKEDQE+VFAMLAAVLWLGNVSF
Sbjct: 363 SAKQYNYLKQSNCYSINGVDDAERFHAVKEALDIVHVSKEDQENVFAMLAAVLWLGNVSF 422
Query: 62 TVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTR 121
T+IDNENHVEP DE L TVAKLIGC+I ELKLALS R MRV NDTIVQ LTLSQA D R
Sbjct: 423 TIIDNENHVEPEPDESLSTVAKLIGCNINELKLALSKRNMRVNNDTIVQKLTLSQAIDAR 482
Query: 122 DALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANE 181
DALAKSIYACLF+WLVEQINKSLAVGKRRTGRSISILDIYGFESF++NSFEQFCINYANE
Sbjct: 483 DALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNKNSFEQFCINYANE 542
Query: 182 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241
RLQQHFNRHLFKLEQEEYIQDGIDW +VDFEDN++CL+LFEKKPLGLLSLLDEESTFPNG
Sbjct: 543 RLQQHFNRHLFKLEQEEYIQDGIDWTRVDFEDNQECLSLFEKKPLGLLSLLDEESTFPNG 602
Query: 242 TDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLS 301
TDLT ANKLKQHLN N CFRG+R K+FTV+HYAGEV Y+TTGFLEKNRDLLH DSI+LLS
Sbjct: 603 TDLTLANKLKQHLNDNSCFRGDRGKAFTVAHYAGEVTYETTGFLEKNRDLLHSDSIQLLS 662
Query: 302 SCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPH 361
SCSCHLPQ FAS+ML S KP+VGPL+KAGGADSQ+LSVATKFKGQLFQLMQRL +TTPH
Sbjct: 663 SCSCHLPQAFASSMLIYSEKPLVGPLHKAGGADSQRLSVATKFKGQLFQLMQRLGNTTPH 722
Query: 362 FIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE 421
FIRCIKPNN QS GLYEQGLVLQQLRCCGVLEVVRISRSGFPTRM H KFARRYGFLLLE
Sbjct: 723 FIRCIKPNNVQSAGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMFHHKFARRYGFLLLE 782
Query: 422 SVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCF 481
++A++DPLSVSVAILHQFNILPEMYQVGYTKLFFR GQIG+LEDTRNRTLHGILR+QS F
Sbjct: 783 NIAAKDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRLQSYF 842
Query: 482 RGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN 541
RGHQAR LKEL+ GI LQSF+RGEK+RKEY +LQRHRA+ IQ +K R+A Q+ K
Sbjct: 843 RGHQARCRLKELKTGITILQSFVRGEKMRKEYTELLQRHRASAAIQSHVKRRIASQQYKA 902
Query: 542 IKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVXXXXXX 601
+S +IQS IRG LVRRC+GDI L S +K N+SDEVLVKAS+L++LQRRV
Sbjct: 903 TVDASAVIQSAIRGELVRRCAGDIGWLSSGGTKRNESDEVLVKASYLSDLQRRVLRTEAA 962
Query: 602 XXXXXXXNDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSE 661
NDIL QR+QQY++RWSEYE KMKSMEE+WQKQM+SLQSSLSIAKKSL ++DS
Sbjct: 963 LREKEEENDILRQRVQQYDNRWSEYETKMKSMEEIWQKQMKSLQSSLSIAKKSLEVEDSA 1022
Query: 662 RNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAK 721
RNSDASVNASD + D+G + R + GLSVISRLAEEF QR+QVFGDD K
Sbjct: 1023 RNSDASVNASDATDL--DSGGSHYQMGHGRSRSVGVGLSVISRLAEEFGQRAQVFGDDRK 1080
Query: 722 FLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEE--GAIDRV 779
FL+EVKSGQVEA+LNPD+ELRRLKQMFE WKKDYG RLRETK+IL+KLGSEE G+ ++V
Sbjct: 1081 FLMEVKSGQVEANLNPDRELRRLKQMFETWKKDYGGRLRETKLILSKLGSEETGGSAEKV 1140
Query: 780 KKKWWGRRNSTR 791
K WWGR STR
Sbjct: 1141 KMNWWGRLRSTR 1152
|
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| TAIR|locus:2162550 ATM2 "myosin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LV42 F1LV42 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| RGD|3143 Myo5a "myosin VA" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NK42 MYO5A "Unconventional myosin-Va" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NK41 MYO5A "Unconventional myosin-Va" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q02440 MYO5A "Unconventional myosin-Va" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NQB6 MYO5A "Unconventional myosin-Va" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RZD2 MYO5A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2125929 XI-I [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_V000294 | hypothetical protein (1173 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 793 | |||
| cd01383 | 677 | cd01383, MYSc_type_VIII, Myosin motor domain, plan | 0.0 | |
| smart00242 | 677 | smart00242, MYSc, Myosin | 0.0 | |
| cd00124 | 679 | cd00124, MYSc, Myosin motor domain | 0.0 | |
| pfam00063 | 679 | pfam00063, Myosin_head, Myosin head (motor domain) | 1e-162 | |
| cd01384 | 674 | cd01384, MYSc_type_XI, Myosin motor domain, plant- | 1e-159 | |
| cd01380 | 691 | cd01380, MYSc_type_V, Myosin motor domain, type V | 1e-159 | |
| COG5022 | 1463 | COG5022, COG5022, Myosin heavy chain [Cytoskeleton | 1e-156 | |
| cd01377 | 693 | cd01377, MYSc_type_II, Myosin motor domain, type I | 1e-154 | |
| cd01378 | 674 | cd01378, MYSc_type_I, Myosin motor domain, type I | 1e-144 | |
| cd01381 | 671 | cd01381, MYSc_type_VII, Myosin motor domain, type | 1e-129 | |
| cd01387 | 677 | cd01387, MYSc_type_XV, Myosin motor domain, type X | 1e-112 | |
| cd01385 | 692 | cd01385, MYSc_type_IX, Myosin motor domain, type I | 1e-108 | |
| cd01379 | 653 | cd01379, MYSc_type_III, Myosin motor domain, type | 9e-96 | |
| cd01382 | 717 | cd01382, MYSc_type_VI, Myosin motor domain, type V | 5e-94 | |
| PTZ00014 | 821 | PTZ00014, PTZ00014, myosin-A; Provisional | 7e-77 | |
| cd01386 | 767 | cd01386, MYSc_type_XVIII, Myosin motor domain, typ | 6e-23 |
| >gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata | Back alignment and domain information |
|---|
Score = 912 bits (2358), Expect = 0.0
Identities = 395/466 (84%), Positives = 424/466 (90%), Gaps = 2/466 (0%)
Query: 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSF 61
SA EYKYL+QS CYSINGVDDA++F +VEALDIVH+SKEDQE+VFAMLAAVLWLGNVSF
Sbjct: 214 SASEYKYLKQSCCYSINGVDDAQRFHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSF 273
Query: 62 TVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTR 121
TVIDNENHVEPVADE L T AKLIGC+I +L LALSTRKM V ND IVQ LTL QA D R
Sbjct: 274 TVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDAR 333
Query: 122 DALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANE 181
DALAKSIYA LF+WLVEQINKSL VGKRRTGRSISILDIYGFESFD+NSFEQFCINYANE
Sbjct: 334 DALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANE 393
Query: 182 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241
RLQQHFNRHLFKLEQEEY +DGIDW KV+FEDN++CL+LFEKKPLGLLSLLDEESTFPN
Sbjct: 394 RLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNA 453
Query: 242 TDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLS 301
TDLTFANKLKQHL +N CFRGER +FTV HYAGEV YDTTGFLEKNRDLLH DSI+LLS
Sbjct: 454 TDLTFANKLKQHLKTNSCFRGERGGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLS 513
Query: 302 SCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPH 361
SC C LPQ+FAS+ML QS PVVGPLY A ADSQKLSV TKFKGQLF+LMQ+LE+TTPH
Sbjct: 514 SCKCQLPQLFASSMLIQS--PVVGPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPH 571
Query: 362 FIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE 421
FIRCIKPNN Q PG+YEQGLVLQQLRCCGVLEVVRISRSG+PTRM+HQ+FARRYGFLLLE
Sbjct: 572 FIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLE 631
Query: 422 SVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 467
++ASQDPLSVSVAIL QFNILPEMYQVGYTKLFFR GQIG LEDTR
Sbjct: 632 NIASQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677
|
This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677 |
| >gnl|CDD|214580 smart00242, MYSc, Myosin | Back alignment and domain information |
|---|
| >gnl|CDD|238071 cd00124, MYSc, Myosin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) | Back alignment and domain information |
|---|
| >gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport | Back alignment and domain information |
|---|
| >gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins | Back alignment and domain information |
|---|
| >gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins | Back alignment and domain information |
|---|
| >gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins | Back alignment and domain information |
|---|
| >gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins | Back alignment and domain information |
|---|
| >gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins | Back alignment and domain information |
|---|
| >gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins | Back alignment and domain information |
|---|
| >gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins | Back alignment and domain information |
|---|
| >gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins | Back alignment and domain information |
|---|
| >gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 793 | |||
| COG5022 | 1463 | Myosin heavy chain [Cytoskeleton] | 100.0 | |
| PTZ00014 | 821 | myosin-A; Provisional | 100.0 | |
| cd01383 | 677 | MYSc_type_VIII Myosin motor domain, plant-specific | 100.0 | |
| KOG0164 | 1001 | consensus Myosin class I heavy chain [Cytoskeleton | 100.0 | |
| cd01381 | 671 | MYSc_type_VII Myosin motor domain, type VII myosin | 100.0 | |
| cd01380 | 691 | MYSc_type_V Myosin motor domain, type V myosins. M | 100.0 | |
| cd01384 | 674 | MYSc_type_XI Myosin motor domain, plant-specific t | 100.0 | |
| KOG0160 | 862 | consensus Myosin class V heavy chain [Cytoskeleton | 100.0 | |
| cd01378 | 674 | MYSc_type_I Myosin motor domain, type I myosins. M | 100.0 | |
| cd01377 | 693 | MYSc_type_II Myosin motor domain, type II myosins. | 100.0 | |
| cd01387 | 677 | MYSc_type_XV Myosin motor domain, type XV myosins. | 100.0 | |
| cd01385 | 692 | MYSc_type_IX Myosin motor domain, type IX myosins. | 100.0 | |
| cd01382 | 717 | MYSc_type_VI Myosin motor domain, type VI myosins. | 100.0 | |
| smart00242 | 677 | MYSc Myosin. Large ATPases. ATPase; molecular moto | 100.0 | |
| KOG0162 | 1106 | consensus Myosin class I heavy chain [Cytoskeleton | 100.0 | |
| cd01379 | 653 | MYSc_type_III Myosin motor domain, type III myosin | 100.0 | |
| cd00124 | 679 | MYSc Myosin motor domain. This catalytic (head) do | 100.0 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 100.0 | |
| cd01386 | 767 | MYSc_type_XVIII Myosin motor domain, type XVIII my | 100.0 | |
| PF00063 | 689 | Myosin_head: Myosin head (motor domain); InterPro: | 100.0 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 100.0 | |
| KOG4229 | 1062 | consensus Myosin VII, myosin IXB and related myosi | 100.0 | |
| KOG0160 | 862 | consensus Myosin class V heavy chain [Cytoskeleton | 98.11 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 98.06 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 97.85 | |
| PF00612 | 21 | IQ: IQ calmodulin-binding motif; InterPro: IPR0000 | 97.2 | |
| KOG2128 | 1401 | consensus Ras GTPase-activating protein family - I | 97.07 | |
| COG5022 | 1463 | Myosin heavy chain [Cytoskeleton] | 96.83 | |
| PF00612 | 21 | IQ: IQ calmodulin-binding motif; InterPro: IPR0000 | 96.78 | |
| KOG0164 | 1001 | consensus Myosin class I heavy chain [Cytoskeleton | 96.66 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 96.06 | |
| PTZ00014 | 821 | myosin-A; Provisional | 95.93 | |
| smart00015 | 26 | IQ Short calmodulin-binding motif containing conse | 95.71 | |
| smart00015 | 26 | IQ Short calmodulin-binding motif containing conse | 95.54 | |
| KOG2128 | 1401 | consensus Ras GTPase-activating protein family - I | 94.94 | |
| KOG4229 | 1062 | consensus Myosin VII, myosin IXB and related myosi | 93.95 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 89.66 | |
| PF15290 | 305 | Syntaphilin: Golgi-localised syntaxin-1-binding cl | 89.18 | |
| PRK13729 | 475 | conjugal transfer pilus assembly protein TraB; Pro | 87.72 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 82.37 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 82.2 |
| >COG5022 Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-132 Score=1172.96 Aligned_cols=542 Identities=41% Similarity=0.701 Sum_probs=498.6
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
.|++|.||++|+|..|+||||+++|+.|+.||++|||++++|.+||+|||||||||||+|..+. ++.+.+.+++.++.+
T Consensus 279 ~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r-~g~a~~~~~~~~~~~ 357 (1463)
T COG5022 279 NPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDR-NGAAIFSDNSVLDKA 357 (1463)
T ss_pred ChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeecc-cchhhcCCchHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998754 456788899999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.|||||+..|.++|+.|.|++|+|.|.+++|..||...||||||+||++||+|||++||.+|..+.. ..+||||||||
T Consensus 358 c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIy 436 (1463)
T COG5022 358 CYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAA-ASNFIGVLDIY 436 (1463)
T ss_pred HHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-cccceeEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999987554 56899999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhc-CCCccccccccccCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEESTFPN 240 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~-kp~Gil~lLDee~~~p~ 240 (793)
|||+|+.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.
T Consensus 437 GFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~ 516 (1463)
T COG5022 437 GFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPH 516 (1463)
T ss_pred chhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 57899999999999999
Q ss_pred CCcHHHHHHHHHHcC--CCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCch-HHHhhhcc
Q 003820 241 GTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNM 315 (793)
Q Consensus 241 ~tD~~f~~kl~~~~~--~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~-~~lf~~~~ 315 (793)
|||++|..||.+.+. +++.|.++| +..|+|+||||+|+|+|.||++||+|+++.++++||..|++++ ..+|....
T Consensus 517 atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~ 596 (1463)
T COG5022 517 ATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEE 596 (1463)
T ss_pred CCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhh
Confidence 999999999999876 567888775 5689999999999999999999999999999999999999986 56887322
Q ss_pred cccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhHHH
Q 003820 316 LSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVV 395 (793)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~v 395 (793)
... ..+.++|+|+.|+.||+.||.+|++|+||||||||||..|+|+.||..+|++|||||||+|+|
T Consensus 597 ~~~--------------~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~I 662 (1463)
T COG5022 597 NIE--------------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETI 662 (1463)
T ss_pred hcc--------------ccCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhhe
Confidence 111 124579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccChHHHHHHhhccccccCCC------CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccc
Q 003820 396 RISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNR 469 (793)
Q Consensus 396 ri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~ 469 (793)
||+|+|||.|++|+||+.||.+|.|...-. .|.+.+|..||..+.+|+..|++|.|||||+.+++..||++|..
T Consensus 663 RIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~ 742 (1463)
T COG5022 663 RISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDA 742 (1463)
T ss_pred eeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHH
Confidence 999999999999999999999999864321 36789999999999999999999999999999999999999999
Q ss_pred cch-hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHhhhhHHHH
Q 003820 470 TLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIM 548 (793)
Q Consensus 470 ~l~-aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~~r~aai~ 548 (793)
.++ .++.||+.|||+..|++|......+..||...+|+..|+.+..-. ..++++.||..|+....|..|......++.
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~ 821 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSRKEYRSYLACIIK 821 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhHHHHHHHHHHHHH
Confidence 886 557899999999999999999999999999999999887664433 346899999999999999999988888888
Q ss_pred HH-HHHhhHHHHh
Q 003820 549 IQ-SVIRGWLVRR 560 (793)
Q Consensus 549 IQ-s~~Rg~~aRr 560 (793)
+| ..+|....+-
T Consensus 822 lq~~i~~~~~~~~ 834 (1463)
T COG5022 822 LQKTIKREKKLRE 834 (1463)
T ss_pred HHHHHHHHHHHhH
Confidence 88 5565555544
|
|
| >PTZ00014 myosin-A; Provisional | Back alignment and domain information |
|---|
| >cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata | Back alignment and domain information |
|---|
| >KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01381 MYSc_type_VII Myosin motor domain, type VII myosins | Back alignment and domain information |
|---|
| >cd01380 MYSc_type_V Myosin motor domain, type V myosins | Back alignment and domain information |
|---|
| >cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport | Back alignment and domain information |
|---|
| >KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01378 MYSc_type_I Myosin motor domain, type I myosins | Back alignment and domain information |
|---|
| >cd01377 MYSc_type_II Myosin motor domain, type II myosins | Back alignment and domain information |
|---|
| >cd01387 MYSc_type_XV Myosin motor domain, type XV myosins | Back alignment and domain information |
|---|
| >cd01385 MYSc_type_IX Myosin motor domain, type IX myosins | Back alignment and domain information |
|---|
| >cd01382 MYSc_type_VI Myosin motor domain, type VI myosins | Back alignment and domain information |
|---|
| >smart00242 MYSc Myosin | Back alignment and domain information |
|---|
| >KOG0162 consensus Myosin class I heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01379 MYSc_type_III Myosin motor domain, type III myosins | Back alignment and domain information |
|---|
| >cd00124 MYSc Myosin motor domain | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins | Back alignment and domain information |
|---|
| >PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility] | Back alignment and domain information |
|---|
| >KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
| >PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K | Back alignment and domain information |
|---|
| >KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5022 Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K | Back alignment and domain information |
|---|
| >KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
| >PTZ00014 myosin-A; Provisional | Back alignment and domain information |
|---|
| >smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues | Back alignment and domain information |
|---|
| >smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues | Back alignment and domain information |
|---|
| >KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility] | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp | Back alignment and domain information |
|---|
| >PRK13729 conjugal transfer pilus assembly protein TraB; Provisional | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 793 | ||||
| 2dfs_A | 1080 | 3-D Structure Of Myosin-V Inhibited State Length = | 1e-115 | ||
| 1oe9_A | 795 | Crystal Structure Of Myosin V Motor With Essential | 1e-102 | ||
| 1w8j_A | 766 | Crystal Structure Of Myosin V Motor Domain - Nucleo | 4e-99 | ||
| 1w9j_A | 770 | Myosin Ii Dictyostelium Discoideum Motor Domain S45 | 4e-99 | ||
| 1w9i_A | 770 | Myosin Ii Dictyostelium Discoideum Motor Domain S45 | 1e-98 | ||
| 1jwy_A | 776 | Crystal Structure Of The Dynamin A Gtpase Domain Co | 3e-98 | ||
| 2jhr_A | 788 | Crystal Structure Of Myosin-2 Motor Domain In Compl | 3e-98 | ||
| 2xel_A | 776 | Molecular Mechanism Of Pentachloropseudilin Mediate | 3e-98 | ||
| 3mnq_A | 788 | Crystal Structure Of Myosin-2 Motor Domain In Compl | 3e-98 | ||
| 2aka_A | 776 | Structure Of The Nucleotide-Free Myosin Ii Motor Do | 3e-98 | ||
| 1yv3_A | 762 | The Structural Basis Of Blebbistatin Inhibition And | 5e-98 | ||
| 1g8x_A | 1010 | Structure Of A Genetically Engineered Molecular Mot | 5e-98 | ||
| 1d0x_A | 761 | Dictyostelium Myosin S1dc (Motor Domain Fragment) C | 5e-98 | ||
| 3myh_X | 762 | Insights Into The Importance Of Hydrogen Bonding In | 5e-98 | ||
| 1w9l_A | 770 | Myosin Ii Dictyostelium Discoideum Motor Domain S45 | 5e-98 | ||
| 2xo8_A | 776 | Crystal Structure Of Myosin-2 In Complex With Tribr | 1e-97 | ||
| 1fmv_A | 761 | Crystal Structure Of The Apo Motor Domain Of Dictyo | 1e-97 | ||
| 1mma_A | 762 | X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga | 2e-97 | ||
| 1w9k_A | 770 | Dictyostelium Discoideum Myosin Ii Motor Domain S45 | 2e-97 | ||
| 2y0r_X | 758 | Structural Basis For The Allosteric Interference Of | 2e-97 | ||
| 2y9e_X | 758 | Structural Basis For The Allosteric Interference Of | 5e-97 | ||
| 1mmd_A | 762 | Truncated Head Of Myosin From Dictyostelium Discoid | 6e-97 | ||
| 1mmg_A | 762 | X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga | 5e-96 | ||
| 1mmn_A | 762 | X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga | 9e-96 | ||
| 1lvk_A | 762 | X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N | 4e-95 | ||
| 1qvi_A | 840 | Crystal Structure Of Scallop Myosin S1 In The Pre-P | 1e-93 | ||
| 1kk7_A | 837 | Scallop Myosin In The Near Rigor Conformation Lengt | 1e-93 | ||
| 1b7t_A | 835 | Myosin Digested By Papain Length = 835 | 2e-93 | ||
| 1dfl_A | 831 | Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra | 2e-93 | ||
| 1dfk_A | 830 | Nucleotide-Free Scallop Myosin S1-Near Rigor State | 2e-93 | ||
| 2ec6_A | 838 | Placopecten Striated Muscle Myosin Ii Length = 838 | 2e-89 | ||
| 3i5g_A | 839 | Crystal Structure Of Rigor-Like Squid Myosin S1 Len | 5e-89 | ||
| 2w4g_M | 840 | Isometrically Contracting Insect Asynchronous Fligh | 4e-88 | ||
| 2os8_A | 840 | Rigor-Like Structures Of Muscle Myosins Reveal Key | 8e-88 | ||
| 3mkd_A | 692 | Crystal Structure Of Myosin-2 Dictyostelium Discoid | 7e-85 | ||
| 2x9h_A | 695 | Crystal Structure Of Myosin-2 Motor Domain In Compl | 4e-84 | ||
| 4db1_A | 783 | Cardiac Human Myosin S1dc, Beta Isoform Complexed W | 6e-84 | ||
| 2mys_A | 843 | Myosin Subfragment-1, Alpha Carbon Coordinates Only | 3e-81 | ||
| 1m8q_A | 840 | Molecular Models Of Averaged Rigor Crossbridges Fro | 3e-81 | ||
| 3dtp_B | 973 | Tarantula Heavy Meromyosin Obtained By Flexible Doc | 5e-80 | ||
| 3dtp_A | 971 | Tarantula Heavy Meromyosin Obtained By Flexible Doc | 5e-80 | ||
| 3j04_A | 909 | Em Structure Of The Heavy Meromyosin Subfragment Of | 1e-79 | ||
| 1i84_S | 1184 | Cryo-Em Structure Of The Heavy Meromyosin Subfragme | 1e-79 | ||
| 1br1_A | 820 | Smooth Muscle Myosin Motor Domain-Essential Light C | 2e-78 | ||
| 1br2_A | 791 | Smooth Muscle Myosin Motor Domain Complexed With Mg | 4e-77 | ||
| 4a7f_C | 697 | Structure Of The Actin-Tropomyosin-Myosin Complex ( | 9e-76 | ||
| 1lkx_A | 697 | Motor Domain Of Myoe, A Class-I Myosin Length = 697 | 1e-75 | ||
| 2ycu_A | 995 | Crystal Structure Of Human Non Muscle Myosin 2c In | 6e-74 | ||
| 2x51_A | 789 | M6 Delta Insert1 Length = 789 | 5e-67 | ||
| 4dbq_A | 788 | Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos | 5e-67 | ||
| 2vas_A | 788 | Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo | 5e-67 | ||
| 3l9i_A | 814 | Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant | 6e-67 | ||
| 2bki_A | 858 | Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St | 2e-66 | ||
| 4dbp_A | 814 | Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal | 3e-66 | ||
| 2bkh_A | 814 | Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc | 4e-66 | ||
| 2v26_A | 784 | Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L | 5e-66 | ||
| 4e7z_A | 798 | Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F | 5e-66 | ||
| 4dbr_A | 786 | Myosin Vi D179y (md) Pre-powerstroke State Length = | 6e-66 | ||
| 4e7s_A | 798 | Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat | 6e-66 | ||
| 4anj_A | 1052 | Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St | 6e-66 |
| >pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 | Back alignment and structure |
|
| >pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 | Back alignment and structure |
| >pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 | Back alignment and structure |
| >pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 | Back alignment and structure |
| >pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 | Back alignment and structure |
| >pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 | Back alignment and structure |
| >pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 | Back alignment and structure |
| >pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 | Back alignment and structure |
| >pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 | Back alignment and structure |
| >pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 | Back alignment and structure |
| >pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 | Back alignment and structure |
| >pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 | Back alignment and structure |
| >pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 | Back alignment and structure |
| >pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 | Back alignment and structure |
| >pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 | Back alignment and structure |
| >pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 | Back alignment and structure |
| >pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 | Back alignment and structure |
| >pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 | Back alignment and structure |
| >pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 | Back alignment and structure |
| >pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 | Back alignment and structure |
| >pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 | Back alignment and structure |
| >pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 | Back alignment and structure |
| >pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 | Back alignment and structure |
| >pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 | Back alignment and structure |
| >pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 | Back alignment and structure |
| >pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 | Back alignment and structure |
| >pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 | Back alignment and structure |
| >pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 | Back alignment and structure |
| >pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 | Back alignment and structure |
| >pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 | Back alignment and structure |
| >pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 | Back alignment and structure |
| >pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 | Back alignment and structure |
| >pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 | Back alignment and structure |
| >pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 | Back alignment and structure |
| >pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 | Back alignment and structure |
| >pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 | Back alignment and structure |
| >pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 | Back alignment and structure |
| >pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 | Back alignment and structure |
| >pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 | Back alignment and structure |
| >pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 | Back alignment and structure |
| >pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 | Back alignment and structure |
| >pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 | Back alignment and structure |
| >pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 | Back alignment and structure |
| >pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 | Back alignment and structure |
| >pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 | Back alignment and structure |
| >pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 | Back alignment and structure |
| >pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 | Back alignment and structure |
| >pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 | Back alignment and structure |
| >pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 | Back alignment and structure |
| >pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 | Back alignment and structure |
| >pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 | Back alignment and structure |
| >pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 | Back alignment and structure |
| >pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 | Back alignment and structure |
| >pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 | Back alignment and structure |
| >pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 | Back alignment and structure |
| >pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 | Back alignment and structure |
| >pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 | Back alignment and structure |
| >pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 | Back alignment and structure |
| >pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 772 bits (1996), Expect = 0.0
Identities = 232/698 (33%), Positives = 370/698 (53%), Gaps = 48/698 (6%)
Query: 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSF 61
+A + Y +Q I+G+DDA++ +A ++ +S Q +F +LA +L LGNV F
Sbjct: 281 NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEF 340
Query: 62 TVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTR 121
D+++ P + L L+G D E+ L RK+ +T ++ ++ A + R
Sbjct: 341 ASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINAR 400
Query: 122 DALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANE 181
DALAK IYA LF W+V+ +NK+L ++ I +LDIYGFE+F+ NSFEQFCINYANE
Sbjct: 401 DALAKHIYANLFNWIVDHVNKALHSTVKQH-SFIGVLDIYGFETFEINSFEQFCINYANE 459
Query: 182 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241
+LQQ FN H+FKLEQEEY+++ I W +DF DN+ C+NL E +G+L LLDEE P G
Sbjct: 460 KLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEA-KMGVLDLLDEECKMPKG 518
Query: 242 TDLTFANKL-KQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIE 298
+D T+A KL HLN F R +K+F + H+A +V Y GFLEKN+D ++ + I+
Sbjct: 519 SDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIK 578
Query: 299 LLSSCSC--HLPQIFASNMLSQS--------------NKPVVGPLYKAGGADSQKLSVAT 342
+L S LP++F + S + K +V
Sbjct: 579 VLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGH 638
Query: 343 KFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGF 402
+F+ L LM+ L +TTPH++RCIKPN+F+ P +++ +QQLR CGVLE +RIS +GF
Sbjct: 639 QFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGF 698
Query: 403 PTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGM 462
P+R ++Q+F RY L+ + D +L + + + YQ G TK+FFRAGQ+
Sbjct: 699 PSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAY 758
Query: 463 LEDTRNRTLHG-ILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHR 521
LE R L +R+Q RG R +RR + +Q ++RG + R L+R R
Sbjct: 759 LEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTR 817
Query: 522 AAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVR-----------------RCSGD 564
AA++IQ+ + V R++ + ++ ++I +Q+++RG+LVR G
Sbjct: 818 AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW 877
Query: 565 ICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDI--------LHQRL 616
+ + + +A+ + + LK EA E+ ++ I L +++
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI 937
Query: 617 QQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 654
+ + +KM ++E + + L+S + + S
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975
|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 | Back alignment and structure |
|---|
| >1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 | Back alignment and structure |
|---|
| >2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 | Back alignment and structure |
|---|
| >1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 | Back alignment and structure |
|---|
| >4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 | Back alignment and structure |
|---|
| >2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 | Back alignment and structure |
|---|
| >2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 793 | |||
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 100.0 | |
| 1kk8_A | 837 | Myosin heavy chain, striated muscle; actin-detache | 100.0 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 100.0 | |
| 1w7j_A | 795 | Myosin VA; motor protein, unconventional myosin, m | 100.0 | |
| 4anj_A | 1052 | Unconventional myosin-VI, green fluorescent prote; | 100.0 | |
| 2ycu_A | 995 | Non muscle myosin 2C, alpha-actinin; motor protein | 100.0 | |
| 1g8x_A | 1010 | Myosin II heavy chain fused to alpha-actinin 3; mo | 100.0 | |
| 1lkx_A | 697 | Myosin IE heavy chain; myosin motor domain, lever | 100.0 | |
| 4db1_A | 783 | Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb | 100.0 | |
| 2v26_A | 784 | Myosin VI; calmodulin-binding, nucleotide-binding, | 100.0 | |
| 1w9i_A | 770 | Myosin II heavy chain; molecular motor, ATPase, mo | 100.0 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 99.76 | |
| 2ix7_C | 58 | Myosin-5A; contractIle protein/metal binding, acti | 98.96 | |
| 2ix7_C | 58 | Myosin-5A; contractIle protein/metal binding, acti | 98.92 | |
| 1n2d_C | 48 | IQ2 and IQ3 motifs from MYO2P, A class V myosin; p | 98.89 | |
| 1n2d_C | 48 | IQ2 and IQ3 motifs from MYO2P, A class V myosin; p | 98.67 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.3 | |
| 2bl0_A | 63 | Major plasmodial myosin heavy chain; muscle protei | 97.82 | |
| 1wdc_A | 64 | Scallop myosin; calcium binding protein, muscle pr | 97.81 | |
| 1wdc_A | 64 | Scallop myosin; calcium binding protein, muscle pr | 96.91 | |
| 2bl0_A | 63 | Major plasmodial myosin heavy chain; muscle protei | 96.9 | |
| 1kk8_A | 837 | Myosin heavy chain, striated muscle; actin-detache | 96.78 | |
| 3gn4_A | 148 | Myosin-VI; unconventional myosin, motility, lever | 96.6 | |
| 3gn4_A | 148 | Myosin-VI; unconventional myosin, motility, lever | 95.52 | |
| 2kxw_B | 27 | Sodium channel protein type 2 subunit alpha; actio | 92.84 | |
| 2l53_B | 31 | CAM, voltage-gated sodium channel type V alpha iso | 92.78 | |
| 2l53_B | 31 | CAM, voltage-gated sodium channel type V alpha iso | 88.31 | |
| 2kxw_B | 27 | Sodium channel protein type 2 subunit alpha; actio | 86.97 | |
| 4anj_A | 1052 | Unconventional myosin-VI, green fluorescent prote; | 86.79 | |
| 3a7p_A | 152 | Autophagy protein 16; coiled-coil, coiled coil, cy | 83.01 |
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-141 Score=1298.92 Aligned_cols=649 Identities=35% Similarity=0.598 Sum_probs=533.8
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
+|++|+||++|+|..++|+||+++|..|+.||++|||+++++.+||+|||||||||||+|...+++....+.+++.++.+
T Consensus 281 ~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~ 360 (1080)
T 2dfs_A 281 NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIF 360 (1080)
T ss_dssp CTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETTTEEECCSSCHHHHHH
T ss_pred CHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCCcceeecCChHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999987665433333688899999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|.++||++++.+++|.|++++|++||.++||||||+||++||+|||.+||.+|.++. ....+|||||||
T Consensus 361 a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~ 439 (1080)
T 2dfs_A 361 CDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIY 439 (1080)
T ss_dssp HHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS-CCCEEEEEEEEC
T ss_pred HHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccCceEEeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998654 346799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~ 241 (793)
|||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|++|+|.||++|||||+++ .|||+||||||++|+|
T Consensus 440 GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~ 518 (1080)
T 2dfs_A 440 GFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKG 518 (1080)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTC
T ss_pred CccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred CcHHHHHHHHHHc-CCCCccccCC--CCCcEEEecCccccccccchhhhccccccHHHHHHHhhc-CCchH-HHhhhccc
Q 003820 242 TDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSC-SCHLP-QIFASNML 316 (793)
Q Consensus 242 tD~~f~~kl~~~~-~~~~~~~~~~--~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S-~~~~~-~lf~~~~~ 316 (793)
||.+|++||++.+ ++||+|..|+ ...|+|+||||+|+|++.|||+||+|+|+++++++|.+| +++++ .+|+....
T Consensus 519 tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~ 598 (1080)
T 2dfs_A 519 SDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEK 598 (1080)
T ss_dssp CHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHHHHBCCCCHHHHHHHHTCSSCSHHHHSCC----
T ss_pred ChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHHhccccccHHHHHHHHcccccHHHHHHhccccc
Confidence 9999999999987 9999998875 579999999999999999999999999999999999999 99875 57864331
Q ss_pred ccC---CC---------CccCCCc--cCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHH
Q 003820 317 SQS---NK---------PVVGPLY--KAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLV 382 (793)
Q Consensus 317 ~~~---~~---------~~~~~~~--~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V 382 (793)
..+ .. ....|.+ .+++...+++||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|
T Consensus 599 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V 678 (1080)
T 2dfs_A 599 AISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRA 678 (1080)
T ss_dssp ---------------------------------CCCBHHHHHHHHHHHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHH
T ss_pred ccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhh
Confidence 110 00 0000000 001223457899999999999999999999999999999999999999999999
Q ss_pred HHHhhhhChhHHHHHHhcCCCCccChHHHHHHhhccccccCCCCChHHHHHHHHHHcCCCCcceeecceeeeeeeccccc
Q 003820 383 LQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGM 462 (793)
Q Consensus 383 ~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~ 462 (793)
++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+++.|+.||..++++++.|++|+|||||+.+++..
T Consensus 679 ~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~ 758 (1080)
T 2dfs_A 679 VQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAY 758 (1080)
T ss_dssp HHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSSHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHH
T ss_pred HHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCCChHHHHHHHHHHhcCChhhheeccccchhccchhhH
Confidence 99999999999999999999999999999999999999866655999999999999999999999999999999999999
Q ss_pred ccccccccch-hhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHh
Q 003820 463 LEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN 541 (793)
Q Consensus 463 LE~~R~~~l~-aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~~ 541 (793)
||.+|...+. +|+.||++||||++|++|++++.+++.||++|||+++|+.+..++ +.+||+.||++||||++|+.|..
T Consensus 759 LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr-~~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 759 LEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLR-RTRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccc-cchhHHHHHHHHhhHHHHHHHHH
Confidence 9999988775 677999999999999999999999999999999999999998776 67899999999999999999999
Q ss_pred hhhHHHHHHHHHhhHHHHhhhhhhhhhHh--------------HhhhcCChhHHHHHHHHHHHHHHHHH-----------
Q 003820 542 IKYSSIMIQSVIRGWLVRRCSGDICLLKS--------------VESKGNDSDEVLVKASFLAELQRRVL----------- 596 (793)
Q Consensus 542 ~r~aai~IQs~~Rg~~aRr~~~~l~~~~~--------------~~~~~~~~~e~~~~~~~l~~lq~r~~----------- 596 (793)
.+.+++.||+.|||+++|+.+..++...+ ..........+.++..++..++++..
T Consensus 838 lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~ 917 (1080)
T 2dfs_A 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVE 917 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987764322 11111223445556666555554221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003820 597 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 653 (793)
Q Consensus 597 ~~e~~l~~~e~e~~~L~~~l~~~e~~~~ele~k~~~~ee~~qkq~~~lq~~L~a~~~ 653 (793)
.+.+....++.++.+|++++++.++++.++++++..+++.++.+.+.|+.+++..++
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 111123456667777777777777777767666666666555555555544444333
|
| >1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A | Back alignment and structure |
|---|
| >4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 | Back alignment and structure |
|---|
| >1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* | Back alignment and structure |
|---|
| >2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* | Back alignment and structure |
|---|
| >1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} | Back alignment and structure |
|---|
| >2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} | Back alignment and structure |
|---|
| >1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} | Back alignment and structure |
|---|
| >1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A | Back alignment and structure |
|---|
| >1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A | Back alignment and structure |
|---|
| >2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} | Back alignment and structure |
|---|
| >1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... | Back alignment and structure |
|---|
| >3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} | Back alignment and structure |
|---|
| >3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} | Back alignment and structure |
|---|
| >2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} | Back alignment and structure |
|---|
| >3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 793 | ||||
| d1kk8a2 | 789 | c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain | 1e-150 | |
| d2mysa2 | 794 | c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain | 1e-146 | |
| d1w7ja2 | 730 | c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick | 1e-146 | |
| d1br2a2 | 710 | c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick | 1e-141 | |
| d1lkxa_ | 684 | c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli | 1e-141 | |
| d1d0xa2 | 712 | c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain | 1e-139 |
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Score = 456 bits (1173), Expect = e-150
Identities = 192/526 (36%), Positives = 292/526 (55%), Gaps = 22/526 (4%)
Query: 3 AKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFT 62
+ Y ++ Q C +++ +DD E+F++ EA DI+ +KE+++S+F A++L +G + F
Sbjct: 258 SGLYSFINQG-CLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFK 316
Query: 63 VIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRD 122
E E VA L G + G+L AL K++VG + + + ++Q ++
Sbjct: 317 QRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVG 376
Query: 123 ALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANER 182
ALAKS+Y +F WLV ++NK+L K + I +LDI GFE FD NSFEQ CINY NER
Sbjct: 377 ALAKSLYDRMFNWLVRRVNKTLDT-KAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNER 435
Query: 183 LQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGT 242
LQQ FN H+F LEQEEY ++GI W +DF + +KP+G+LS+L+EE FP
Sbjct: 436 LQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKAD 495
Query: 243 DLTFANKL-KQHLNSNPCF--------RGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLH 293
D +F +KL + H+ N F + F + HYAG V Y TG+LEKN+D ++
Sbjct: 496 DKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPIN 555
Query: 294 LDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQ 353
+ + LL + + + +P G K G S +++ + L +LM+
Sbjct: 556 ENVVALLGASKEP----LVAELFKAPEEPA-GGGKKKKGKSSAFQTISAVHRESLNKLMK 610
Query: 354 RLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAR 413
L ST PHF+RCI PN + PGL + LVL QL+C GVLE +RI R GFP+R+ + +F +
Sbjct: 611 NLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQ 670
Query: 414 RYGFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTL 471
RY L ++ D +VS IL + P Y++G TK+FF+AG +G LE+ R+ L
Sbjct: 671 RYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERL 730
Query: 472 HG-ILRVQSCFRGHQAR---LCLKELRRGIVALQSFIRGEKIRKEY 513
I Q+ RG+ R L++ R G+ +Q IR + + +
Sbjct: 731 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 776
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 | Back information, alignment and structure |
|---|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 | Back information, alignment and structure |
|---|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 | Back information, alignment and structure |
|---|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 | Back information, alignment and structure |
|---|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 793 | |||
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 100.0 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 100.0 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 100.0 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 100.0 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 100.0 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 100.0 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 97.24 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 97.11 |
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=100.00 E-value=1.5e-118 Score=1071.87 Aligned_cols=512 Identities=36% Similarity=0.584 Sum_probs=451.5
Q ss_pred CCccCccccCCCccccCCcccHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeEEeeCCCCceeecCchHHHHH
Q 003820 2 SAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITV 81 (793)
Q Consensus 2 ~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~~~~~~~~if~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~ 81 (793)
++.+|+||++| +..++++||+++|..++.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.+
T Consensus 259 ~~~~y~yl~~~-~~~~~~~~d~~~f~~~~~al~~lg~s~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~~ 337 (794)
T d2mysa2 259 NPYDYHYVSEG-EITVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKA 337 (794)
T ss_dssp CGGGCGGGCSS-CCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSCCEEESCSSHHHHH
T ss_pred CHHHhhhcCCC-CcccCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccceeEeecCCcccccccchHHHHHH
Confidence 57899999996 56899999999999999999999999999999999999999999999998888788999999999999
Q ss_pred HHHhCCCHHHHHHHHccceeeecCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEeecC
Q 003820 82 AKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIY 161 (793)
Q Consensus 82 a~LLgv~~~~L~~~L~~~~i~~~~e~i~~~lt~~qA~~~rdaLak~LY~rLF~wlV~~IN~~l~~~~~~~~~~IgILDI~ 161 (793)
|.||||++++|..+|+++++.++|+.+++++|+++|.++||+|||+||++||+|||.+||.+|.++. ....+|||||||
T Consensus 338 a~LLgi~~~~L~~~L~~~~~~~~~e~i~~~l~~~~a~~~rdalaK~LY~~LF~wiV~~IN~~l~~~~-~~~~~IgILDif 416 (794)
T d2mysa2 338 AYLMGLNSAELLKALCYPRVGVGNEAVTKGETVSEVHNSVGALAKAVYEKMFLWMVIRINQQLDTKQ-PRQYFIGVLDIA 416 (794)
T ss_dssp HHHHTCCHHHHHHHHHSCBCCCSSSCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCEEEEEEEEE
T ss_pred HHHhCCCHHHhhccceeeEEEecccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-CcceEEEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 346799999999
Q ss_pred CCccCCCCChhHHHHHHhhHHHHHHHHHHhhHHHHHHHhhcCCcccccccCCchhHHHhhhcCCCccccccccccCCCCC
Q 003820 162 GFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNG 241 (793)
Q Consensus 162 GFE~f~~NsfEQlcINyaNEkLq~~f~~~~f~~eqeeY~~EgI~w~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~ 241 (793)
|||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|+.|+|.||..++++|..+|.|||++|||||++|++
T Consensus 417 GFE~f~~NsfEQLcINyaNEkLQq~f~~~~F~~Eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~kp~Gil~lLdee~~~~~~ 496 (794)
T d2mysa2 417 GFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKA 496 (794)
T ss_dssp CCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSTHHHHHHHHHHHSTTSHHHHHHHHTTCTTC
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCHHHHHHHHhCcccHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999988888888888899999999999999999
Q ss_pred CcHHHHHHHHHHc-CCCCccccCC------CCCcEEEecCccccccccchhhhccccccHHHHHHHhhcCCchH-HHhhh
Q 003820 242 TDLTFANKLKQHL-NSNPCFRGER------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFAS 313 (793)
Q Consensus 242 tD~~f~~kl~~~~-~~~~~~~~~~------~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~~-~lf~~ 313 (793)
||.+|++||++.+ +++++|..+. +..|+|+||||+|+|+|+||++||+|.+++++++||.+|+++++ .+|+.
T Consensus 497 td~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~ 576 (794)
T d2mysa2 497 TDTSFKNKLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEKNKDPLNETVIGLYQKSSVKTLALLFAT 576 (794)
T ss_dssp CHHHHHHHHHHHHBTTBSSEECCCCC---CCCSEEEECSSCEEEECCSSHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSC
T ss_pred cHHHHHHHHHHHhcCCCccccCCCccCCCCCCceEEEeeCceeeehhcchHHhccCcccHHHHHHHHhCCCHHHHHhhhh
Confidence 9999999997654 5667775432 46899999999999999999999999999999999999999965 57865
Q ss_pred cccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCccchhHHHHHhhhhChhH
Q 003820 314 NMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLE 393 (793)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle 393 (793)
........... ...........||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||+|+||||
T Consensus 577 ~~~~~~~~~~~---~~~~~~~~~~~Tv~~~fr~sL~~L~~~L~~t~~hFIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE 653 (794)
T d2mysa2 577 YGGEAEGGGGK---KGGKKKGSSFQTVSALFRENLNKLMANLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLE 653 (794)
T ss_dssp C-----------------------CCSHHHHHHHHHHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHSHHH
T ss_pred cccccccccCC---cCCCCCCCccccHHHHHHHHHHHHHHHHhcCCCeEEEeecCCcccCCcccchHHHHHHHHhcCHHH
Confidence 43221111100 001111234579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccChHHHHHHhhccccccCC---CCChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccccc
Q 003820 394 VVRISRSGFPTRMSHQKFARRYGFLLLESVA---SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRT 470 (793)
Q Consensus 394 ~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~---~~d~~~~~~~il~~~~~~~~~~~vGkTKVFlr~~~~~~LE~~R~~~ 470 (793)
+|+|++.|||+|++|.+|+.||++|+|...+ ..|.++.|+.||..+++++.+|++|+||||||.+.+..||.+|.+.
T Consensus 654 ~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~r~~~ 733 (794)
T d2mysa2 654 GIRICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFKAGLLGLLEEMRDDK 733 (794)
T ss_dssp HHHHHTTSCCCEEEHHHHHHHHGGGTTTC------CCTTHHHHHHTTSSSCCSSSEEEETTEEEECTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccccHHHHHHHHHHhCcccccccccCCHHHHHHHHHHhcCCCcccEEeCCCeEEeCccHHHHHHHHHHHH
Confidence 9999999999999999999999999987654 3488999999999999999999999999999999999999987654
Q ss_pred chhhHhhhhhhcccccchhhcccccchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 003820 471 LHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 540 (793)
Q Consensus 471 l~aa~~IQ~~~Rg~~~R~~~~~~~~a~i~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~R~~~~ 540 (793)
+.. +++.||++||||++|++|.+++.++.|+++||++||+|++|+.|.
T Consensus 734 l~~----------------------~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~ 781 (794)
T d2mysa2 734 LAE----------------------IITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWP 781 (794)
T ss_dssp HHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 432 356667777777777777777666678899999999998887775
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|